TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2576887.2.1
(1138 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
emb|BX821463.1|CNS0A8E3 Arabidopsis thaliana Full-length cD... 226 2e-074
ref|NM_129536.2| Arabidopsis thaliana RNS2 (RIBONUCLEASE 2)... 237 6e-064
gb|M98336.1|ATHRNS2X Arabidopsis thaliana ribonuclease (RNS... 237 6e-064
emb|BX819005.1|CNS0A8TI Arabidopsis thaliana Full-length cD... 237 6e-064
emb|BX819504.1|CNS0A7Y6 Arabidopsis thaliana Full-length cD... 237 6e-064
emb|CQ806246.1| Sequence 2657 from Patent WO2004035798 237 6e-064
gb|AV825172.1|AV825172 AV825172 RAFL6 Arabidopsis thaliana ... 220 9e-056
emb|AJ275979.1|ATH275979 Arabidopsis thaliana gene for GDP-... 78 4e-055
gb|CK121456.1|CK121456 203a20.p1 AtM1 Arabidopsis thaliana ... 214 4e-054
gb|AC003000.3| Arabidopsis thaliana chromosome 2 clone T5I7... 78 3e-048
gb|CD529387.1|CD529387 02L14 Arabidopsis Leaf Senescence Li... 193 9e-048
gb|AV527174.1|AV527174 AV527174 Arabidopsis thaliana aboveg... 172 2e-041
gb|AV832175.1|AV832175 AV832175 RAFL11 Arabidopsis thaliana... 121 2e-038
gb|AI995637.1|AI995637 701676626 A. thaliana, Columbia Col-... 122 7e-030
gb|BP797567.1|BP797567 BP797567 RAFL14 Arabidopsis thaliana... 88 3e-029
gb|T23025.1|T23025 5033 Lambda-PRL2 Arabidopsis thaliana cD... 125 2e-027
ref|NM_101288.1| Arabidopsis thaliana RNA binding / endorib... 48 3e-022
gb|BP807020.1|BP807020 BP807020 RAFL16 Arabidopsis thaliana... 66 5e-022
>emb|BX821463.1|CNS0A8E3 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTSIL43ZE02 of Silique of strain col-0 of Arabidopsis
thaliana (thale cress)
Length = 1003
Score = 226 bits (487), Expect(3) = 2e-074
Identities = 80/153 (52%), Positives = 109/153 (71%)
Frame = +1 / +1
Query: 265 FTIHGLWPDYDDGTWPSCCRRTQFEMDKILPLKEVLDKYWPSLYCSKSGTCFSGKGLFWA 444
FTIHGLWPDY+DG+WPSCC R+ F+ +I L + L+KYWPSL C +C GKG FW
Sbjct: 217 FTIHGLWPDYNDGSWPSCCYRSDFKEKEISTLMDGLEKYWPSLSCGSPSSCNGGKGSFWG 396
Query: 445 HEWEKHGTCSAPVVQDELQYFTLALDLYSKYNVTEMLSSGGIQVSNGKEYALSDVIDTIK 624
HEWEKHGTCS+PV DE +F L+LY K+ VT++L G SN ++Y L ++ I+
Sbjct: 397 HEWEKHGTCSSPVFHDEYNHFLTTLNLYLKHKVTDVLYQAGYVASNSEKYPLGGIVTAIQ 576
Query: 625 HAFGGSPQIVCKRGSIEELRLCFDKELKPRDCL 723
+AF +P++VCKR +I+E+R+CF K+ KPR C+
Sbjct: 577 NAFHITPEVVCKRDAIDEIRICFYKDFKPRHCV 675
Score = 81.3 bits (171), Expect(3) = 1e-021
Identities = 49/101 (48%), Positives = 53/101 (52%)
Frame = -3 / -3
Query: 548 SVTLYLE*RSRARVKYCNSS*TTGAEQVPCFSHS*AQKSPLPLKHVPDLEQ*RDGQYLSS 369
SVTL +*R K SS* TG EQVPCFSHS Q P P H Q R GQY S
Sbjct: 500 SVTLCFK*RLSVVRK*LYSS*KTGEEQVPCFSHSWPQNDPFPPLHDDGEPQLRLGQYFSR 321
Query: 368 TSFSGNILSISNWVRRQHDGQVPSS*SGHSPWIVNVWSGSE 246
S + I R QH+G PS *SGH+P IVN SE
Sbjct: 320 PSINVEISFSLKSDR*QHEGHEPSL*SGHNP*IVN*VGASE 198
Score = 64.3 bits (134), Expect(3) = 2e-074
Identities = 24/41 (58%), Positives = 27/41 (65%)
Frame = +1 / +1
Query: 142 SKPQREFDYFALSLQWPGTICASTRHCCATNGCCRSEPLQT 264
++ QRE DYFALSLQWPGT C TRHC + N C R T
Sbjct: 91 NRSQRECDYFALSLQWPGTYCRGTRHCGSKNACGRGSDAPT 213
Score = 36.3 bits (73), Expect(3) = 1e-021
Identities = 16/28 (57%), Positives = 19/28 (67%)
Frame = -3 / -3
Query: 239 QPLVAQQWRVEAQMVPGHWRESAK*SNS 156
Q + QWRV Q VPGH R+ AK*S+S
Sbjct: 188 QAFLEPQWRVPRQ*VPGH*RDRAK*SHS 105
Score = 31.3 bits (62), Expect(3) = 2e-074
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = +1 / +1
Query: 748 VSKSKHCPRYITLPTYDPL 804
++ K CP+Y++LP Y PL
Sbjct: 688 LTSRKSCPKYVSLPAYTPL 744
Score = 25.8 bits (50), Expect(3) = 1e-021
Identities = 14/26 (53%), Positives = 14/26 (53%)
Frame = -3 / -3
Query: 719 QSRGFNSLSKHNLSSSIEPLLQTICG 642
Q G SL KH SSI LLQT G
Sbjct: 671 QCLGLKSL*KHIRISSIASLLQTTSG 594
>ref|NM_129536.2| Arabidopsis thaliana RNS2 (RIBONUCLEASE 2); RNA binding /
endoribonuclease AT2G39780 (RNS2) mRNA, complete cds
Length = 1027
Score = 237 bits (511), Expect(2) = 6e-064
Identities = 86/168 (51%), Positives = 115/168 (68%)
Frame = +1 / +1
Query: 220 CCATNGCCRSEPLQTFTIHGLWPDYDDGTWPSCCRRTQFEMDKILPLKEVLDKYWPSLYC 399
C C S+ FTIHGLWPDY+DG+WPSCC R+ F+ +I L + L+KYWPSL C
Sbjct: 172 CSKNACCRGSDAPTQFTIHGLWPDYNDGSWPSCCYRSDFKEKEISTLMDGLEKYWPSLSC 351
Query: 400 SKSGTCFSGKGLFWAHEWEKHGTCSAPVVQDELQYFTLALDLYSKYNVTEMLSSGGIQVS 579
+C GKG FW HEWEKHGTCS+PV DE YF L+LY K+NVT++L G S
Sbjct: 352 GSPSSCNGGKGSFWGHEWEKHGTCSSPVFHDEYNYFLTTLNLYLKHNVTDVLYQAGYVAS 531
Query: 580 NGKEYALSDVIDTIKHAFGGSPQIVCKRGSIEELRLCFDKELKPRDCL 723
N ++Y L ++ I++AF +P++VCKR +I+E+R+CF K+ KPRDC+
Sbjct: 532 NSEKYPLGGIVTAIQNAFHITPEVVCKRDAIDEIRICFYKDFKPRDCV 675
Score = 83.1 bits (175), Expect(3) = 6e-025
Identities = 51/110 (46%), Positives = 56/110 (50%)
Frame = -3 / -3
Query: 548 SVTLYLE*RSRARVKYCNSS*TTGAEQVPCFSHS*AQKSPLPLKHVPDLEQ*RDGQYLSS 369
SVTL +*R K SS* TG EQVPCFSHS Q P P H Q R GQY S
Sbjct: 500 SVTLCFK*RLSVVRK*LYSS*KTGEEQVPCFSHSWPQNDPFPPLHDDGEPQLRLGQYFSR 321
Query: 368 TSFSGNILSISNWVRRQHDGQVPSS*SGHSPWIVNVWSGSERQQPLVAQQ 219
S + I R QH+G PS *SGH+P IVN SE Q +Q
Sbjct: 320 PSINVEISFSLKSDR*QHEGHEPSL*SGHNP*IVN*VGASEPLQQAFLEQ 171
Score = 43.7 bits (89), Expect(3) = 6e-025
Identities = 19/29 (65%), Positives = 21/29 (72%)
Frame = -3 / -3
Query: 242 QQPLVAQQWRVEAQMVPGHWRESAK*SNS 156
QQ + QQWRV Q VPGH R+ AK*SNS
Sbjct: 191 QQAFLEQQWRVPRQ*VPGH*RDRAK*SNS 105
Score = 30.9 bits (61), Expect(2) = 6e-064
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = +1 / +1
Query: 748 VSKSKHCPRYITLPTYDPL 804
++ K CP+Y++LP Y PL
Sbjct: 688 LTSRKSCPKYVSLPEYTPL 744
Score = 28.1 bits (55), Expect(3) = 6e-025
Identities = 15/26 (57%), Positives = 15/26 (57%)
Frame = -3 / -3
Query: 719 QSRGFNSLSKHNLSSSIEPLLQTICG 642
QS G SL KH SSI LLQT G
Sbjct: 671 QSLGLKSL*KHIRISSIASLLQTTSG 594
>gb|M98336.1|ATHRNS2X Arabidopsis thaliana ribonuclease (RNS2) mRNA, complete cds
Length = 1012
Score = 237 bits (511), Expect(2) = 6e-064
Identities = 86/168 (51%), Positives = 115/168 (68%)
Frame = +1 / +1
Query: 220 CCATNGCCRSEPLQTFTIHGLWPDYDDGTWPSCCRRTQFEMDKILPLKEVLDKYWPSLYC 399
C C S+ FTIHGLWPDY+DG+WPSCC R+ F+ +I L + L+KYWPSL C
Sbjct: 172 CSKNACCRGSDAPTQFTIHGLWPDYNDGSWPSCCYRSDFKEKEISTLMDGLEKYWPSLSC 351
Query: 400 SKSGTCFSGKGLFWAHEWEKHGTCSAPVVQDELQYFTLALDLYSKYNVTEMLSSGGIQVS 579
+C GKG FW HEWEKHGTCS+PV DE YF L+LY K+NVT++L G S
Sbjct: 352 GSPSSCNGGKGSFWGHEWEKHGTCSSPVFHDEYNYFLTTLNLYLKHNVTDVLYQAGYVAS 531
Query: 580 NGKEYALSDVIDTIKHAFGGSPQIVCKRGSIEELRLCFDKELKPRDCL 723
N ++Y L ++ I++AF +P++VCKR +I+E+R+CF K+ KPRDC+
Sbjct: 532 NSEKYPLGGIVTAIQNAFHITPEVVCKRDAIDEIRICFYKDFKPRDCV 675
Score = 83.1 bits (175), Expect(3) = 6e-025
Identities = 51/110 (46%), Positives = 56/110 (50%)
Frame = -3 / -3
Query: 548 SVTLYLE*RSRARVKYCNSS*TTGAEQVPCFSHS*AQKSPLPLKHVPDLEQ*RDGQYLSS 369
SVTL +*R K SS* TG EQVPCFSHS Q P P H Q R GQY S
Sbjct: 500 SVTLCFK*RLSVVRK*LYSS*KTGEEQVPCFSHSWPQNDPFPPLHDDGEPQLRLGQYFSR 321
Query: 368 TSFSGNILSISNWVRRQHDGQVPSS*SGHSPWIVNVWSGSERQQPLVAQQ 219
S + I R QH+G PS *SGH+P IVN SE Q +Q
Sbjct: 320 PSINVEISFSLKSDR*QHEGHEPSL*SGHNP*IVN*VGASEPLQQAFLEQ 171
Score = 43.7 bits (89), Expect(3) = 6e-025
Identities = 19/29 (65%), Positives = 21/29 (72%)
Frame = -3 / -3
Query: 242 QQPLVAQQWRVEAQMVPGHWRESAK*SNS 156
QQ + QQWRV Q VPGH R+ AK*SNS
Sbjct: 191 QQAFLEQQWRVPRQ*VPGH*RDRAK*SNS 105
Score = 30.9 bits (61), Expect(2) = 6e-064
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = +1 / +1
Query: 748 VSKSKHCPRYITLPTYDPL 804
++ K CP+Y++LP Y PL
Sbjct: 688 LTSRKSCPKYVSLPEYTPL 744
Score = 28.1 bits (55), Expect(3) = 6e-025
Identities = 15/26 (57%), Positives = 15/26 (57%)
Frame = -3 / -3
Query: 719 QSRGFNSLSKHNLSSSIEPLLQTICG 642
QS G SL KH SSI LLQT G
Sbjct: 671 QSLGLKSL*KHIRISSIASLLQTTSG 594
>emb|BX819005.1|CNS0A8TI Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTFB36ZG11 of Flowers and buds of strain col-0 of
Arabidopsis thaliana (thale cress)
Length = 975
Score = 237 bits (511), Expect(2) = 6e-064
Identities = 86/168 (51%), Positives = 115/168 (68%)
Frame = +1 / +1
Query: 220 CCATNGCCRSEPLQTFTIHGLWPDYDDGTWPSCCRRTQFEMDKILPLKEVLDKYWPSLYC 399
C C S+ FTIHGLWPDY+DG+WPSCC R+ F+ +I L + L+KYWPSL C
Sbjct: 172 CSKNACCRGSDAPTQFTIHGLWPDYNDGSWPSCCYRSDFKEKEISTLMDGLEKYWPSLSC 351
Query: 400 SKSGTCFSGKGLFWAHEWEKHGTCSAPVVQDELQYFTLALDLYSKYNVTEMLSSGGIQVS 579
+C GKG FW HEWEKHGTCS+PV DE YF L+LY K+NVT++L G S
Sbjct: 352 GSPSSCNGGKGSFWGHEWEKHGTCSSPVFHDEYNYFLTTLNLYLKHNVTDVLYQAGYVAS 531
Query: 580 NGKEYALSDVIDTIKHAFGGSPQIVCKRGSIEELRLCFDKELKPRDCL 723
N ++Y L ++ I++AF +P++VCKR +I+E+R+CF K+ KPRDC+
Sbjct: 532 NSEKYPLGGIVTAIQNAFHITPEVVCKRDAIDEIRICFYKDFKPRDCV 675
Score = 83.1 bits (175), Expect(3) = 6e-025
Identities = 51/110 (46%), Positives = 56/110 (50%)
Frame = -3 / -2
Query: 548 SVTLYLE*RSRARVKYCNSS*TTGAEQVPCFSHS*AQKSPLPLKHVPDLEQ*RDGQYLSS 369
SVTL +*R K SS* TG EQVPCFSHS Q P P H Q R GQY S
Sbjct: 500 SVTLCFK*RLSVVRK*LYSS*KTGEEQVPCFSHSWPQNDPFPPLHDDGEPQLRLGQYFSR 321
Query: 368 TSFSGNILSISNWVRRQHDGQVPSS*SGHSPWIVNVWSGSERQQPLVAQQ 219
S + I R QH+G PS *SGH+P IVN SE Q +Q
Sbjct: 320 PSINVEISFSLKSDR*QHEGHEPSL*SGHNP*IVN*VGASEPLQQAFLEQ 171
Score = 43.7 bits (89), Expect(3) = 6e-025
Identities = 19/29 (65%), Positives = 21/29 (72%)
Frame = -3 / -2
Query: 242 QQPLVAQQWRVEAQMVPGHWRESAK*SNS 156
QQ + QQWRV Q VPGH R+ AK*SNS
Sbjct: 191 QQAFLEQQWRVPRQ*VPGH*RDRAK*SNS 105
Score = 30.9 bits (61), Expect(2) = 6e-064
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = +1 / +1
Query: 748 VSKSKHCPRYITLPTYDPL 804
++ K CP+Y++LP Y PL
Sbjct: 688 LTSRKSCPKYVSLPEYTPL 744
Score = 28.1 bits (55), Expect(3) = 6e-025
Identities = 15/26 (57%), Positives = 15/26 (57%)
Frame = -3 / -2
Query: 719 QSRGFNSLSKHNLSSSIEPLLQTICG 642
QS G SL KH SSI LLQT G
Sbjct: 671 QSLGLKSL*KHIRISSIASLLQTTSG 594
>emb|BX819504.1|CNS0A7Y6 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTFB85ZA01 of Flowers and buds of strain col-0 of
Arabidopsis thaliana (thale cress)
Length = 926
Score = 237 bits (511), Expect(2) = 6e-064
Identities = 86/168 (51%), Positives = 115/168 (68%)
Frame = +1 / +1
Query: 220 CCATNGCCRSEPLQTFTIHGLWPDYDDGTWPSCCRRTQFEMDKILPLKEVLDKYWPSLYC 399
C C S+ FTIHGLWPDY+DG+WPSCC R+ F+ +I L + L+KYWPSL C
Sbjct: 172 CSKNACCRGSDAPTQFTIHGLWPDYNDGSWPSCCYRSDFKEKEISTLMDGLEKYWPSLSC 351
Query: 400 SKSGTCFSGKGLFWAHEWEKHGTCSAPVVQDELQYFTLALDLYSKYNVTEMLSSGGIQVS 579
+C GKG FW HEWEKHGTCS+PV DE YF L+LY K+NVT++L G S
Sbjct: 352 GSPSSCNGGKGSFWGHEWEKHGTCSSPVFHDEYNYFLTTLNLYLKHNVTDVLYQAGYVAS 531
Query: 580 NGKEYALSDVIDTIKHAFGGSPQIVCKRGSIEELRLCFDKELKPRDCL 723
N ++Y L ++ I++AF +P++VCKR +I+E+R+CF K+ KPRDC+
Sbjct: 532 NSEKYPLGGIVTAIQNAFHITPEVVCKRDAIDEIRICFYKDFKPRDCV 675
Score = 83.1 bits (175), Expect(3) = 6e-025
Identities = 51/110 (46%), Positives = 56/110 (50%)
Frame = -3 / -1
Query: 548 SVTLYLE*RSRARVKYCNSS*TTGAEQVPCFSHS*AQKSPLPLKHVPDLEQ*RDGQYLSS 369
SVTL +*R K SS* TG EQVPCFSHS Q P P H Q R GQY S
Sbjct: 500 SVTLCFK*RLSVVRK*LYSS*KTGEEQVPCFSHSWPQNDPFPPLHDDGEPQLRLGQYFSR 321
Query: 368 TSFSGNILSISNWVRRQHDGQVPSS*SGHSPWIVNVWSGSERQQPLVAQQ 219
S + I R QH+G PS *SGH+P IVN SE Q +Q
Sbjct: 320 PSINVEISFSLKSDR*QHEGHEPSL*SGHNP*IVN*VGASEPLQQAFLEQ 171
Score = 43.7 bits (89), Expect(3) = 6e-025
Identities = 19/29 (65%), Positives = 21/29 (72%)
Frame = -3 / -1
Query: 242 QQPLVAQQWRVEAQMVPGHWRESAK*SNS 156
QQ + QQWRV Q VPGH R+ AK*SNS
Sbjct: 191 QQAFLEQQWRVPRQ*VPGH*RDRAK*SNS 105
Score = 30.9 bits (61), Expect(2) = 6e-064
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = +1 / +1
Query: 748 VSKSKHCPRYITLPTYDPL 804
++ K CP+Y++LP Y PL
Sbjct: 688 LTSRKSCPKYVSLPEYTPL 744
Score = 28.1 bits (55), Expect(3) = 6e-025
Identities = 15/26 (57%), Positives = 15/26 (57%)
Frame = -3 / -1
Query: 719 QSRGFNSLSKHNLSSSIEPLLQTICG 642
QS G SL KH SSI LLQT G
Sbjct: 671 QSLGLKSL*KHIRISSIASLLQTTSG 594
>emb|CQ806246.1| Sequence 2657 from Patent WO2004035798
Length = 780
Score = 237 bits (511), Expect(2) = 6e-064
Identities = 86/168 (51%), Positives = 115/168 (68%)
Frame = +1 / +1
Query: 220 CCATNGCCRSEPLQTFTIHGLWPDYDDGTWPSCCRRTQFEMDKILPLKEVLDKYWPSLYC 399
C C S+ FTIHGLWPDY+DG+WPSCC R+ F+ +I L + L+KYWPSL C
Sbjct: 157 CSKNACCRGSDAPTQFTIHGLWPDYNDGSWPSCCYRSDFKEKEISTLMDGLEKYWPSLSC 336
Query: 400 SKSGTCFSGKGLFWAHEWEKHGTCSAPVVQDELQYFTLALDLYSKYNVTEMLSSGGIQVS 579
+C GKG FW HEWEKHGTCS+PV DE YF L+LY K+NVT++L G S
Sbjct: 337 GSPSSCNGGKGSFWGHEWEKHGTCSSPVFHDEYNYFLTTLNLYLKHNVTDVLYQAGYVAS 516
Query: 580 NGKEYALSDVIDTIKHAFGGSPQIVCKRGSIEELRLCFDKELKPRDCL 723
N ++Y L ++ I++AF +P++VCKR +I+E+R+CF K+ KPRDC+
Sbjct: 517 NSEKYPLGGIVTAIQNAFHITPEVVCKRDAIDEIRICFYKDFKPRDCV 660
Score = 83.1 bits (175), Expect(3) = 6e-025
Identities = 51/110 (46%), Positives = 56/110 (50%)
Frame = -3 / -2
Query: 548 SVTLYLE*RSRARVKYCNSS*TTGAEQVPCFSHS*AQKSPLPLKHVPDLEQ*RDGQYLSS 369
SVTL +*R K SS* TG EQVPCFSHS Q P P H Q R GQY S
Sbjct: 485 SVTLCFK*RLSVVRK*LYSS*KTGEEQVPCFSHSWPQNDPFPPLHDDGEPQLRLGQYFSR 306
Query: 368 TSFSGNILSISNWVRRQHDGQVPSS*SGHSPWIVNVWSGSERQQPLVAQQ 219
S + I R QH+G PS *SGH+P IVN SE Q +Q
Sbjct: 305 PSINVEISFSLKSDR*QHEGHEPSL*SGHNP*IVN*VGASEPLQQAFLEQ 156
Score = 43.7 bits (89), Expect(3) = 6e-025
Identities = 19/29 (65%), Positives = 21/29 (72%)
Frame = -3 / -2
Query: 242 QQPLVAQQWRVEAQMVPGHWRESAK*SNS 156
QQ + QQWRV Q VPGH R+ AK*SNS
Sbjct: 176 QQAFLEQQWRVPRQ*VPGH*RDRAK*SNS 90
Score = 30.9 bits (61), Expect(2) = 6e-064
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = +1 / +1
Query: 748 VSKSKHCPRYITLPTYDPL 804
++ K CP+Y++LP Y PL
Sbjct: 673 LTSRKSCPKYVSLPEYTPL 729
Score = 28.1 bits (55), Expect(3) = 6e-025
Identities = 15/26 (57%), Positives = 15/26 (57%)
Frame = -3 / -2
Query: 719 QSRGFNSLSKHNLSSSIEPLLQTICG 642
QS G SL KH SSI LLQT G
Sbjct: 656 QSLGLKSL*KHIRISSIASLLQTTSG 579
>gb|AV825172.1|AV825172 AV825172 RAFL6 Arabidopsis thaliana cDNA clone RAFL06-88-B05 5',
mRNA sequence
Length = 635
Score = 220 bits (474), Expect = 9e-056
Identities = 80/158 (50%), Positives = 107/158 (67%)
Frame = +1 / +3
Query: 220 CCATNGCCRSEPLQTFTIHGLWPDYDDGTWPSCCRRTQFEMDKILPLKEVLDKYWPSLYC 399
C C S+ FTIHGLWPDY+DG+WPSCC R+ F+ +I L + L+KYWPSL C
Sbjct: 159 CSKNACCRGSDAPTQFTIHGLWPDYNDGSWPSCCYRSDFKEKEISTLMDGLEKYWPSLSC 338
Query: 400 SKSGTCFSGKGLFWAHEWEKHGTCSAPVVQDELQYFTLALDLYSKYNVTEMLSSGGIQVS 579
+C GKG FW HEWEKHGTCS+PV DE YF L+LY K+NVT++L G S
Sbjct: 339 GSPSSCNGGKGSFWGHEWEKHGTCSSPVFHDEYNYFLTTLNLYLKHNVTDVLYQAGYVAS 518
Query: 580 NGKEYALSDVIDTIKHAFGGSPQIVCKRGSIEELRLCF 693
N ++Y L ++ I++AF +P++VCKR +I+E+R+CF
Sbjct: 519 NSEKYPLGGIVTAIQNAFHITPEVVCKRDAIDEIRICF 632
Score = 83.1 bits (175), Expect(2) = 7e-022
Identities = 51/110 (46%), Positives = 56/110 (50%)
Frame = -3 / -2
Query: 548 SVTLYLE*RSRARVKYCNSS*TTGAEQVPCFSHS*AQKSPLPLKHVPDLEQ*RDGQYLSS 369
SVTL +*R K SS* TG EQVPCFSHS Q P P H Q R GQY S
Sbjct: 487 SVTLCFK*RLSVVRK*LYSS*KTGEEQVPCFSHSWPQNDPFPPLHDDGEPQLRLGQYFSR 308
Query: 368 TSFSGNILSISNWVRRQHDGQVPSS*SGHSPWIVNVWSGSERQQPLVAQQ 219
S + I R QH+G PS *SGH+P IVN SE Q +Q
Sbjct: 307 PSINVEISFSLKSDR*QHEGHEPSL*SGHNP*IVN*VGASEPLQQAFLEQ 158
Score = 43.7 bits (89), Expect(2) = 7e-022
Identities = 19/29 (65%), Positives = 21/29 (72%)
Frame = -3 / -2
Query: 242 QQPLVAQQWRVEAQMVPGHWRESAK*SNS 156
QQ + QQWRV Q VPGH R+ AK*SNS
Sbjct: 178 QQAFLEQQWRVPRQ*VPGH*RDRAK*SNS 92
>emb|AJ275979.1|ATH275979 Arabidopsis thaliana gene for GDP-mannose pyrophosphorylase, gene for
vacuolar ribonuclease and gene for proline byosinthesis
codifying enzyme
Length = 9423
Score = 78.0 bits (164), Expect(6) = 4e-055
Identities = 26/35 (74%), Positives = 29/35 (82%)
Frame = +1 / +3
Query: 142 SKPQREFDYFALSLQWPGTICASTRHCCATNGCCR 246
++ QREFDYFALSLQWPGT C TRHCC+ N CCR
Sbjct: 3363 NRSQREFDYFALSLQWPGTYCRGTRHCCSKNACCR 3467
Score = 59.7 bits (124), Expect(6) = 4e-055
Identities = 21/54 (38%), Positives = 37/54 (68%)
Frame = +1 / +2
Query: 547 EMLSSGGIQVSNGKEYALSDVIDTIKHAFGGSPQIVCKRGSIEELRLCFDKELK 708
++L G SN ++Y L ++ I++AF +P++VCKR +I+E+R+CF K+ K
Sbjct: 4865 DVLYQAGYVASNSEKYPLGGIVTAIQNAFHITPEVVCKRDAIDEIRICFYKDFK 5026
Score = 58.8 bits (122), Expect(6) = 4e-055
Identities = 20/37 (54%), Positives = 24/37 (64%)
Frame = +1 / +1
Query: 346 KILPLKEVLDKYWPSLYCSKSGTCFSGKGLFWAHEWE 456
+I L + L+KYWPSL C +C GKG FW HEWE
Sbjct: 4027 QISTLMDGLEKYWPSLSCGSPSSCNGGKGSFWGHEWE 4137
Score = 53.8 bits (111), Expect(6) = 4e-055
Identities = 21/34 (61%), Positives = 24/34 (70%)
Frame = +1 / +3
Query: 454 EKHGTCSAPVVQDELQYFTLALDLYSKYNVTEML 555
EKHGTCS+PV DE YF L+LY K+NVT L
Sbjct: 4509 EKHGTCSSPVFHDEYNYFLTTLNLYLKHNVTVSL 4610
Score = 52.8 bits (109), Expect(6) = 4e-055
Identities = 15/27 (55%), Positives = 22/27 (81%)
Frame = +1 / +3
Query: 271 IHGLWPDYDDGTWPSCCRRTQFEMDKI 351
+ GLWPDY+DG+WPSCC R+ F+ ++
Sbjct: 3831 VDGLWPDYNDGSWPSCCYRSDFKEKEV 3911
Score = 30.9 bits (61), Expect(6) = 4e-055
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = +1 / +1
Query: 748 VSKSKHCPRYITLPTYDPL 804
++ K CP+Y++LP Y PL
Sbjct: 5323 LTSRKSCPKYVSLPEYTPL 5379
>gb|CK121456.1|CK121456 203a20.p1 AtM1 Arabidopsis thaliana cDNA clone MPMGp2011A20203
5-PRIME, mRNA sequence
Length = 617
Score = 214 bits (462), Expect = 4e-054
Identities = 79/157 (50%), Positives = 105/157 (66%)
Frame = +1 / +3
Query: 220 CCATNGCCRSEPLQTFTIHGLWPDYDDGTWPSCCRRTQFEMDKILPLKEVLDKYWPSLYC 399
C C S+ FTIHGLWPDY+DG+WPSCC R+ F+ +I L + L+KYWPSL C
Sbjct: 147 CSKNACCRGSDAPTQFTIHGLWPDYNDGSWPSCCYRSDFKEKEISTLMDGLEKYWPSLSC 326
Query: 400 SKSGTCFSGKGLFWAHEWEKHGTCSAPVVQDELQYFTLALDLYSKYNVTEMLSSGGIQVS 579
+C GKG FW HEWEKHGTCS+PV DE YF L+LY K+NVT++L G S
Sbjct: 327 GSPSSCNGGKGSFWGHEWEKHGTCSSPVFHDEYNYFLTTLNLYLKHNVTDVLYQAGYVAS 506
Query: 580 NGKEYALSDVIDTIKHAFGGSPQIVCKRGSIEELRLC 690
N ++Y L ++ I++AF +P +VCKR +I+E+R+C
Sbjct: 507 NSEKYPLGGIVTAIQNAFHITP*VVCKRDAIDEIRIC 617
Score = 82.6 bits (174), Expect(2) = 1e-021
Identities = 51/110 (46%), Positives = 56/110 (50%)
Frame = -3 / -2
Query: 548 SVTLYLE*RSRARVKYCNSS*TTGAEQVPCFSHS*AQKSPLPLKHVPDLEQ*RDGQYLSS 369
SVTL +*R K SS* TG EQVPCFSHS Q P P H Q R GQY S
Sbjct: 475 SVTLCFK*RLSVVRK*LYSS*KTGDEQVPCFSHSWPQNDPFPPLHDDGEPQLRLGQYFSR 296
Query: 368 TSFSGNILSISNWVRRQHDGQVPSS*SGHSPWIVNVWSGSERQQPLVAQQ 219
S + I R QH+G PS *SGH+P IVN SE Q +Q
Sbjct: 295 PSINVEISFSLKSDR*QHEGHEPSL*SGHNP*IVN*VGASEPLQQAFLEQ 146
Score = 43.7 bits (89), Expect(2) = 1e-021
Identities = 19/29 (65%), Positives = 21/29 (72%)
Frame = -3 / -2
Query: 242 QQPLVAQQWRVEAQMVPGHWRESAK*SNS 156
QQ + QQWRV Q VPGH R+ AK*SNS
Sbjct: 166 QQAFLEQQWRVPRQ*VPGH*RDRAK*SNS 80
>gb|AC003000.3| Arabidopsis thaliana chromosome 2 clone T5I7 map CIC10A06, complete
sequence
Length = 92624
Score = 78.0 bits (164), Expect(6) = 3e-048
Identities = 26/35 (74%), Positives = 29/35 (82%)
Frame = +1 / +3
Query: 142 SKPQREFDYFALSLQWPGTICASTRHCCATNGCCR 246
++ QREFDYFALSLQWPGT C TRHCC+ N CCR
Sbjct: 33864 NRSQREFDYFALSLQWPGTYCRGTRHCCSKNACCR 33968
Score = 59.7 bits (124), Expect(6) = 3e-048
Identities = 21/54 (38%), Positives = 37/54 (68%)
Frame = +1 / +1
Query: 547 EMLSSGGIQVSNGKEYALSDVIDTIKHAFGGSPQIVCKRGSIEELRLCFDKELK 708
++L G SN ++Y L ++ I++AF +P++VCKR +I+E+R+CF K+ K
Sbjct: 35365 DVLYQAGYVASNSEKYPLGGIVTAIQNAFHITPEVVCKRDAIDEIRICFYKDFK 35526
Score = 53.8 bits (111), Expect(6) = 3e-048
Identities = 21/34 (61%), Positives = 24/34 (70%)
Frame = +1 / +1
Query: 454 EKHGTCSAPVVQDELQYFTLALDLYSKYNVTEML 555
EKHGTCS+PV DE YF L+LY K+NVT L
Sbjct: 35008 EKHGTCSSPVFHDEYNYFLTTLNLYLKHNVTVSL 35109
Score = 52.8 bits (109), Expect(6) = 3e-048
Identities = 15/27 (55%), Positives = 22/27 (81%)
Frame = +1 / +2
Query: 271 IHGLWPDYDDGTWPSCCRRTQFEMDKI 351
+ GLWPDY+DG+WPSCC R+ F+ ++
Sbjct: 34331 VDGLWPDYNDGSWPSCCYRSDFKEKEV 34411
Score = 51.5 bits (106), Expect(6) = 3e-048
Identities = 18/35 (51%), Positives = 22/35 (62%)
Frame = +1 / +3
Query: 346 KILPLKEVLDKYWPSLYCSKSGTCFSGKGLFWAHE 450
+I L + L+KYWPSL C +C GKG FW HE
Sbjct: 34527 QISTLMDGLEKYWPSLSCGSPSSCNGGKGSFWGHE 34631
Score = 30.9 bits (61), Expect(6) = 3e-048
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = +1 / +3
Query: 748 VSKSKHCPRYITLPTYDPL 804
++ K CP+Y++LP Y PL
Sbjct: 35823 LTSRKSCPKYVSLPEYTPL 35879
>gb|CD529387.1|CD529387 02L14 Arabidopsis Leaf Senescence Library Arabidopsis thaliana cDNA
3', mRNA sequence
Length = 438
Score = 193 bits (416), Expect = 9e-048
Identities = 70/138 (50%), Positives = 96/138 (69%)
Frame = +1 / +3
Query: 310 PSCCRRTQFEMDKILPLKEVLDKYWPSLYCSKSGTCFSGKGLFWAHEWEKHGTCSAPVVQ 489
PSCC R+ F+ +I L + L+KYWPSL C +C GKG FW HEWEKHGTCS+PV
Sbjct: 3 PSCCYRSDFKEKEISTLMDGLEKYWPSLSCGSPSSCNGGKGSFWGHEWEKHGTCSSPVFH 182
Query: 490 DELQYFTLALDLYSKYNVTEMLSSGGIQVSNGKEYALSDVIDTIKHAFGGSPQIVCKRGS 669
DE YF L+LY K+NVT++L G SN ++Y L ++ I++AF +P++VCKR +
Sbjct: 183 DEYNYFLTTLNLYLKHNVTDVLYQAGYVASNSEKYPLGGIVTAIQNAFHITPEVVCKRDA 362
Query: 670 IEELRLCFDKELKPRDCL 723
I+E+R+CF K+ KPRDC+
Sbjct: 363 IDEIRICFYKDFKPRDCV 416
>gb|AV527174.1|AV527174 AV527174 Arabidopsis thaliana aboveground organs two to six-week
old Arabidopsis thaliana cDNA clone APZ30g03R 5', mRNA
sequence
Length = 520
Score = 172 bits (370), Expect = 2e-041
Identities = 63/116 (54%), Positives = 77/116 (66%)
Frame = +1 / +2
Query: 220 CCATNGCCRSEPLQTFTIHGLWPDYDDGTWPSCCRRTQFEMDKILPLKEVLDKYWPSLYC 399
C C S+ FTIHGLWPDY+DG+WPSCC R+ F+ +I L + L+KYWPSL C
Sbjct: 167 CSKNACCRGSDAPTQFTIHGLWPDYNDGSWPSCCYRSDFKEKEISTLMDGLEKYWPSLSC 346
Query: 400 SKSGTCFSGKGLFWAHEWEKHGTCSAPVVQDELQYFTLALDLYSKYNVTEMLSSGG 567
+C GKG FW HEWEKHGTCS+PV DE YF L+LY K+NVT++L G
Sbjct: 347 GSPSSCNGGKGSFWGHEWEKHGTCSSPVFHDEYNYFLTTLNLYLKHNVTDVLYQAG 514
Score = 83.1 bits (175), Expect(2) = 7e-022
Identities = 51/110 (46%), Positives = 56/110 (50%)
Frame = -3 / -2
Query: 548 SVTLYLE*RSRARVKYCNSS*TTGAEQVPCFSHS*AQKSPLPLKHVPDLEQ*RDGQYLSS 369
SVTL +*R K SS* TG EQVPCFSHS Q P P H Q R GQY S
Sbjct: 495 SVTLCFK*RLSVVRK*LYSS*KTGEEQVPCFSHSWPQNDPFPPLHDDGEPQLRLGQYFSR 316
Query: 368 TSFSGNILSISNWVRRQHDGQVPSS*SGHSPWIVNVWSGSERQQPLVAQQ 219
S + I R QH+G PS *SGH+P IVN SE Q +Q
Sbjct: 315 PSINVEISFSLKSDR*QHEGHEPSL*SGHNP*IVN*VGASEPLQQAFLEQ 166
Score = 43.7 bits (89), Expect(2) = 7e-022
Identities = 19/29 (65%), Positives = 21/29 (72%)
Frame = -3 / -2
Query: 242 QQPLVAQQWRVEAQMVPGHWRESAK*SNS 156
QQ + QQWRV Q VPGH R+ AK*SNS
Sbjct: 186 QQAFLEQQWRVPRQ*VPGH*RDRAK*SNS 100
>gb|AV832175.1|AV832175 AV832175 RAFL11 Arabidopsis thaliana cDNA clone RAFL11-05-B04 5',
mRNA sequence
Length = 607
Score = 121 bits (259), Expect(2) = 2e-038
Identities = 43/81 (53%), Positives = 52/81 (64%)
Frame = +1 / +2
Query: 220 CCATNGCCRSEPLQTFTIHGLWPDYDDGTWPSCCRRTQFEMDKILPLKEVLDKYWPSLYC 399
C C S+ FTIHGLWPDY+DG+WPSCC R+ F+ +I L + L+KYWPSL C
Sbjct: 194 CSKNACCRGSDAPTQFTIHGLWPDYNDGSWPSCCYRSDFKEKEISTLMDGLEKYWPSLSC 373
Query: 400 SKSGTCFSGKGLFWAHEWEKH 462
+C GKG FW HEWE H
Sbjct: 374 GSPSSCNGGKGSFWGHEWEFH 436
Score = 60.6 bits (126), Expect(2) = 2e-038
Identities = 23/46 (50%), Positives = 31/46 (67%)
Frame = +1 / +2
Query: 454 EKHGTCSAPVVQDELQYFTLALDLYSKYNVTEMLSSGGIQVSNGKE 591
+KHGTCS+PV DE YF L+LY K+NVT++L G SN ++
Sbjct: 464 KKHGTCSSPVFHDEYNYFLTTLNLYLKHNVTDVLYQAGYVASNSEK 601
>gb|AI995637.1|AI995637 701676626 A. thaliana, Columbia Col-0, inflorescence-1 Arabidopsis
thaliana cDNA clone 701676626, mRNA sequence
Length = 530
Score = 122 bits (262), Expect(2) = 7e-030
Identities = 45/90 (50%), Positives = 65/90 (72%)
Frame = +1 / -2
Query: 454 EKHGTCSAPVVQDELQYFTLALDLYSKYNVTEMLSSGGIQVSNGKEYALSDVIDTIKHAF 633
EKHGTCS+PV DE YF L+LY K+NVT++L G SN ++Y L ++ I++AF
Sbjct: 520 EKHGTCSSPVFHDEYNYFLTTLNLYLKHNVTDVLYQAGYVASNSEKYPLGGIVTAIQNAF 341
Query: 634 GGSPQIVCKRGSIEELRLCFDKELKPRDCL 723
+P++VCKR +I+E+R+CF K+ KPRDC+
Sbjct: 340 HITPEVVCKRDAIDEIRICFYKDFKPRDCV 251
Score = 30.9 bits (61), Expect(2) = 7e-030
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = +1 / -2
Query: 748 VSKSKHCPRYITLPTYDPL 804
++ K CP+Y++LP Y PL
Sbjct: 238 LTSRKSCPKYVSLPEYTPL 182
>gb|BP797567.1|BP797567 BP797567 RAFL14 Arabidopsis thaliana cDNA clone RAFL23-03-N11 5',
mRNA sequence
Length = 391
Score = 87.7 bits (185), Expect(3) = 3e-029
Identities = 29/52 (55%), Positives = 38/52 (73%)
Frame = +1 / +2
Query: 262 TFTIHGLWPDYDDGTWPSCCRRTQFEMDKILPLKEVLDKYWPSLYCSKSGTC 417
+ TIHGLWPDY+DG+WPSCC R+ F+ +I L + L+KYWPSL C +C
Sbjct: 230 SITIHGLWPDYNDGSWPSCCYRSDFKEKEISTLMDGLEKYWPSLSCGSPSSC 385
Score = 52.8 bits (109), Expect(3) = 3e-029
Identities = 19/25 (76%), Positives = 21/25 (84%)
Frame = +1 / +1
Query: 142 SKPQREFDYFALSLQWPGTICASTR 216
++ QREFDYFALSLQWPGT C TR
Sbjct: 109 NRSQREFDYFALSLQWPGTYCRGTR 183
Score = 29.0 bits (57), Expect(3) = 3e-029
Identities = 8/16 (50%), Positives = 9/16 (56%)
Frame = +1 / +3
Query: 217 HCCATNGCCRSEPLQT 264
HCC+ N CCR T
Sbjct: 183 HCCSKNACCRGSDAPT 230
>gb|T23025.1|T23025 5033 Lambda-PRL2 Arabidopsis thaliana cDNA clone 109D13T7, mRNA
sequence
Length = 392
Score = 125 bits (268), Expect = 2e-027
Identities = 48/104 (46%), Positives = 63/104 (60%)
Frame = +1 / +3
Query: 349 ILPLKEVLDKYWPSLYCSKSGTCFSGKGLFWAHEWEKHGTCSAPVVQDELQYFTLALDLY 528
I L + L+KYWPSL C +C GKG FW HEWEKHG CS+P DE YF L+LY
Sbjct: 3 ISTLMDGLEKYWPSLSCGSPSSCNXGKGSFWGHEWEKHGXCSSPXFHDEYNYFLTTLNLY 182
Query: 529 SKYNVTEMLSSGGIQVSNGKEYALSDVIDTIKHAFGGSPQIVCK 660
K+NVT + G SN ++Y L ++ I++AF +P +V K
Sbjct: 183 LKHNVTGVXYQAGYVASNSEKYPLGGIVTAIQNAFHITPXVVXK 314
>ref|NM_101288.1| Arabidopsis thaliana RNA binding / endoribonuclease AT1G14220 mRNA,
complete cds
Length = 687
Score = 48.3 bits (99), Expect(4) = 3e-022
Identities = 15/28 (53%), Positives = 20/28 (71%)
Frame = +1 / +1
Query: 142 SKPQREFDYFALSLQWPGTICASTRHCC 225
S+PQ +FD+F LQWPG C ++R CC
Sbjct: 64 SRPQEDFDFFYFVLQWPGAYCDTSRACC 147
Score = 45.1 bits (92), Expect(4) = 3e-022
Identities = 14/24 (58%), Positives = 18/24 (75%)
Frame = +1 / +1
Query: 250 EPLQTFTIHGLWPDYDDGTWPSCC 321
+P F IHGLWP+Y+ G+WPS C
Sbjct: 163 KPAADFGIHGLWPNYNGGSWPSNC 234
Score = 41.8 bits (85), Expect(4) = 3e-022
Identities = 13/17 (76%), Positives = 14/17 (82%)
Frame = +1 / +1
Query: 436 FWAHEWEKHGTCSAPVV 486
FW HEWEKHGTCS V+
Sbjct: 337 FWEHEWEKHGTCSESVM 387
Score = 27.6 bits (54), Expect(4) = 3e-022
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = +1 / +1
Query: 313 SCCRRTQFEMDKILPLKEVLDKYWPSLYC 399
+C +QF+ +I L L K WP+L C
Sbjct: 229 NCDPDSQFDRSQISDLVSSLKKNWPTLSC 315
>gb|BP807020.1|BP807020 BP807020 RAFL16 Arabidopsis thaliana cDNA clone RAFL24-12-A15 5',
mRNA sequence
Length = 388
Score = 66.1 bits (138), Expect(2) = 5e-022
Identities = 26/63 (41%), Positives = 34/63 (53%)
Frame = +1 / +1
Query: 238 CCRSEPLQTFTIHGLWPDYDDGTWPSCCRRTQFEMDKILPLKEVLDKYWPSLYCSKSGTC 417
C S+ FTIHGLWPDY+DG+WP + + L + L+KYWPSL +C
Sbjct: 199 CRGSDAPTQFTIHGLWPDYNDGSWPYVVIDLTLKRRRFQRLMDGLEKYWPSLSGGSPSSC 378
Query: 418 FSG 426
G
Sbjct: 379 NGG 387
Score = 61.1 bits (127), Expect(2) = 5e-022
Identities = 21/34 (61%), Positives = 23/34 (67%)
Frame = +1 / +1
Query: 163 DYFALSLQWPGTICASTRHCCATNGCCRSEPLQT 264
DYFALSL+WPGT C TRHC + N CCR T
Sbjct: 121 DYFALSLKWPGTYCRGTRHCGSKNACCRGSDAPT 222
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 2,060,219,509
Number of Sequences: 1013581
Number of extensions: 29613941
Number of successful extensions: 137923
Number of sequences better than 1.0e-020: 21
length of database: 302,980,290
effective HSP length: 57
effective length of database: 245,206,173
effective search space used: 78711181533
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)