TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2521918.2.1
(417 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
ref|NM_129141.1| Arabidopsis thaliana unknown protein AT2G3... 102 5e-021
gb|AY086216.1| Arabidopsis thaliana clone 22535 mRNA, compl... 102 7e-021
>ref|NM_129141.1| Arabidopsis thaliana unknown protein AT2G35820 mRNA, complete cds
Length = 835
Score = 102 bits (218), Expect = 5e-021
Identities = 40/59 (67%), Positives = 46/59 (77%)
Frame = +2 / +1
Query: 5 VFRVSGPKFLKLNKGTWHAGPLFKADAVDFYNLELSNTNVVDHTTHHFKKHDGITFVVE 181
VFRVSGPKF+KLN GTWH GPLF +DFYNLELSNTN VD TT+ F K+ G+T V+
Sbjct: 394 VFRVSGPKFIKLNHGTWHVGPLFSDSYMDFYNLELSNTNAVDRTTYDFIKNKGVTIRVD 570
>gb|AY086216.1| Arabidopsis thaliana clone 22535 mRNA, complete sequence
Length = 833
Score = 102 bits (217), Expect = 7e-021
Identities = 39/59 (66%), Positives = 46/59 (77%)
Frame = +2 / +1
Query: 5 VFRVSGPKFLKLNKGTWHAGPLFKADAVDFYNLELSNTNVVDHTTHHFKKHDGITFVVE 181
+FRVSGPKF+KLN GTWH GPLF +DFYNLELSNTN VD TT+ F K+ G+T V+
Sbjct: 394 IFRVSGPKFIKLNHGTWHVGPLFSDSYMDFYNLELSNTNAVDRTTYDFIKNKGVTIRVD 570
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 913,921,282
Number of Sequences: 1013581
Number of extensions: 12608384
Number of successful extensions: 276607
Number of sequences better than 1.0e-020: 2
length of database: 302,980,290
effective HSP length: 54
effective length of database: 248,246,916
effective search space used: 20852740944
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)