TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2493645.2.1
(870 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
ref|NM_129512.1| Arabidopsis thaliana unknown protein AT2G3... 118 3e-025
emb|AL764200.1| Arabidopsis thaliana T-DNA flanking sequenc... 116 7e-025
gb|AC004218.3| Arabidopsis thaliana chromosome 2 clone F12L... 116 7e-025
emb|CQ768520.1| Sequence 15 from Patent WO2004007712 116 7e-025
ref|NC_003071.3| Arabidopsis thaliana chromosome 2, complet... 116 7e-025
gb|BP827940.1|BP827940 BP827940 RAFL19 Arabidopsis thaliana... 68 4e-021
ref|NM_125377.2| Arabidopsis thaliana unknown protein AT5G5... 68 5e-021
gb|AU236859.1|AU236859 AU236859 RAFL15 Arabidopsis thaliana... 68 5e-021
gb|AY084760.1| Arabidopsis thaliana clone 11699 mRNA, compl... 68 5e-021
dbj|AK118173.1| Arabidopsis thaliana At5g59845 mRNA for unk... 68 5e-021
gb|AU227862.1|AU227862 AU227862 RAFL15 Arabidopsis thaliana... 68 5e-021
>ref|NM_129512.1| Arabidopsis thaliana unknown protein AT2G39540 mRNA, complete cds
Length = 264
Score = 118 bits (252), Expect = 3e-025
Identities = 42/70 (60%), Positives = 47/70 (67%)
Frame = +2 / +1
Query: 296 SLRVSMAGSGFCDGKCAVRCSKASRHDDCLKYCGICCATCNCVPSGTAGNKDECPCYRDM 475
S V + C GKC VRCSKA +H++CLKYC ICC CNCVPSGT G+KDECPCYRDM
Sbjct: 52 SFSVLSSADSSCGGKCNVRCSKAGQHEECLKYCNICCQKCNCVPSGTFGHKDECPCYRDM 231
Query: 476 TTGHGNRTRP 505
G P
Sbjct: 232 KNSKGGSKCP 261
>emb|AL764200.1| Arabidopsis thaliana T-DNA flanking sequence GK-122H03-012551,
genomic survey sequence
Length = 309
Score = 116 bits (249), Expect = 7e-025
Identities = 40/59 (67%), Positives = 44/59 (74%)
Frame = +2 / -1
Query: 329 CDGKCAVRCSKASRHDDCLKYCGICCATCNCVPSGTAGNKDECPCYRDMTTGHGNRTRP 505
C GKC VRCSKA +H++CLKYC ICC CNCVPSGT G+KDECPCYRDM G P
Sbjct: 213 CGGKCNVRCSKAGQHEECLKYCNICCQKCNCVPSGTFGHKDECPCYRDMKNSKGGSKCP 37
>gb|AC004218.3| Arabidopsis thaliana chromosome 2 clone F12L6 map CIC10A06, complete
sequence
Length = 102312
Score = 116 bits (249), Expect = 7e-025
Identities = 40/59 (67%), Positives = 44/59 (74%)
Frame = +2 / +2
Query: 329 CDGKCAVRCSKASRHDDCLKYCGICCATCNCVPSGTAGNKDECPCYRDMTTGHGNRTRP 505
C GKC VRCSKA +H++CLKYC ICC CNCVPSGT G+KDECPCYRDM G P
Sbjct: 69752 CGGKCNVRCSKAGQHEECLKYCNICCQKCNCVPSGTFGHKDECPCYRDMKNSKGGSKCP 69928
>emb|CQ768520.1| Sequence 15 from Patent WO2004007712
Length = 1376
Score = 116 bits (249), Expect = 7e-025
Identities = 40/59 (67%), Positives = 44/59 (74%)
Frame = +2 / +1
Query: 329 CDGKCAVRCSKASRHDDCLKYCGICCATCNCVPSGTAGNKDECPCYRDMTTGHGNRTRP 505
C GKC VRCSKA +H++CLKYC ICC CNCVPSGT G+KDECPCYRDM G P
Sbjct: 697 CGGKCNVRCSKAGQHEECLKYCNICCQKCNCVPSGTFGHKDECPCYRDMKNSKGGSKCP 873
>ref|NC_003071.3| Arabidopsis thaliana chromosome 2, complete sequence
Length = 19705359
Score = 116 bits (249), Expect = 7e-025
Identities = 40/59 (67%), Positives = 44/59 (74%)
Frame = +2 / +1
Query: 329 CDGKCAVRCSKASRHDDCLKYCGICCATCNCVPSGTAGNKDECPCYRDMTTGHGNRTRP 505
C GKC VRCSKA +H++CLKYC ICC CNCVPSGT G+KDECPCYRDM G P
Sbjct: 16508140 CGGKCNVRCSKAGQHEECLKYCNICCQKCNCVPSGTFGHKDECPCYRDMKNSKGGSKCP 16508316
>gb|BP827940.1|BP827940 BP827940 RAFL19 Arabidopsis thaliana cDNA clone RAFL22-77-D12 5',
mRNA sequence
Length = 375
Score = 68.4 bits (143), Expect(2) = 4e-021
Identities = 25/38 (65%), Positives = 26/38 (68%)
Frame = +2 / +3
Query: 305 VSMAGSGFCDGKCAVRCSKASRHDDCLKYCGICCATCN 418
+S A S C GKC VRCSKA R D CLKYC ICC CN
Sbjct: 93 LSTADSSPCGGKCKVRCSKAGRQDRCLKYCNICCEKCN 206
Score = 55.6 bits (115), Expect(2) = 4e-021
Identities = 20/29 (68%), Positives = 20/29 (68%)
Frame = +2 / +3
Query: 419 CVPSGTAGNKDECPCYRDMTTGHGNRTRP 505
CVPSGT GNKDECPCYRDM G P
Sbjct: 210 CVPSGTYGNKDECPCYRDMKNSKGTSKCP 296
>ref|NM_125377.2| Arabidopsis thaliana unknown protein AT5G59845 mRNA, complete cds
Length = 593
Score = 68.0 bits (142), Expect(2) = 5e-021
Identities = 25/38 (65%), Positives = 26/38 (68%)
Frame = +2 / +3
Query: 305 VSMAGSGFCDGKCAVRCSKASRHDDCLKYCGICCATCN 418
+S A S C GKC VRCSKA R D CLKYC ICC CN
Sbjct: 183 LSTADSSPCGGKCNVRCSKAGRQDRCLKYCNICCEKCN 296
Score = 55.6 bits (115), Expect(2) = 5e-021
Identities = 20/29 (68%), Positives = 20/29 (68%)
Frame = +2 / +3
Query: 419 CVPSGTAGNKDECPCYRDMTTGHGNRTRP 505
CVPSGT GNKDECPCYRDM G P
Sbjct: 300 CVPSGTYGNKDECPCYRDMKNSKGTSKCP 386
>gb|AU236859.1|AU236859 AU236859 RAFL15 Arabidopsis thaliana cDNA clone RAFL15-28-K07 5',
mRNA sequence
Length = 590
Score = 68.0 bits (142), Expect(2) = 5e-021
Identities = 25/38 (65%), Positives = 26/38 (68%)
Frame = +2 / +2
Query: 305 VSMAGSGFCDGKCAVRCSKASRHDDCLKYCGICCATCN 418
+S A S C GKC VRCSKA R D CLKYC ICC CN
Sbjct: 173 LSTADSSPCGGKCNVRCSKAGRQDRCLKYCNICCEKCN 286
Score = 55.6 bits (115), Expect(2) = 5e-021
Identities = 20/29 (68%), Positives = 20/29 (68%)
Frame = +2 / +2
Query: 419 CVPSGTAGNKDECPCYRDMTTGHGNRTRP 505
CVPSGT GNKDECPCYRDM G P
Sbjct: 290 CVPSGTYGNKDECPCYRDMKNSKGTSKCP 376
>gb|AY084760.1| Arabidopsis thaliana clone 11699 mRNA, complete sequence
Length = 504
Score = 68.0 bits (142), Expect(2) = 5e-021
Identities = 25/38 (65%), Positives = 26/38 (68%)
Frame = +2 / +3
Query: 305 VSMAGSGFCDGKCAVRCSKASRHDDCLKYCGICCATCN 418
+S A S C GKC VRCSKA R D CLKYC ICC CN
Sbjct: 183 LSTADSSPCGGKCNVRCSKAGRQDRCLKYCNICCEKCN 296
Score = 55.6 bits (115), Expect(2) = 5e-021
Identities = 20/29 (68%), Positives = 20/29 (68%)
Frame = +2 / +3
Query: 419 CVPSGTAGNKDECPCYRDMTTGHGNRTRP 505
CVPSGT GNKDECPCYRDM G P
Sbjct: 300 CVPSGTYGNKDECPCYRDMKNSKGTSKCP 386
>dbj|AK118173.1| Arabidopsis thaliana At5g59845 mRNA for unknown protein, complete
cds, clone: RAFL19-49-C22
Length = 488
Score = 68.0 bits (142), Expect(2) = 5e-021
Identities = 25/38 (65%), Positives = 26/38 (68%)
Frame = +2 / +1
Query: 305 VSMAGSGFCDGKCAVRCSKASRHDDCLKYCGICCATCN 418
+S A S C GKC VRCSKA R D CLKYC ICC CN
Sbjct: 94 LSTADSSPCGGKCNVRCSKAGRQDRCLKYCNICCEKCN 207
Score = 55.6 bits (115), Expect(2) = 5e-021
Identities = 20/29 (68%), Positives = 20/29 (68%)
Frame = +2 / +1
Query: 419 CVPSGTAGNKDECPCYRDMTTGHGNRTRP 505
CVPSGT GNKDECPCYRDM G P
Sbjct: 211 CVPSGTYGNKDECPCYRDMKNSKGTSKCP 297
>gb|AU227862.1|AU227862 AU227862 RAFL15 Arabidopsis thaliana cDNA clone RAFL15-28-K07 3',
mRNA sequence
Length = 442
Score = 68.0 bits (142), Expect(2) = 5e-021
Identities = 25/38 (65%), Positives = 26/38 (68%)
Frame = +2 / -3
Query: 305 VSMAGSGFCDGKCAVRCSKASRHDDCLKYCGICCATCN 418
+S A S C GKC VRCSKA R D CLKYC ICC CN
Sbjct: 410 LSTADSSPCGGKCNVRCSKAGRQDRCLKYCNICCEKCN 297
Score = 55.6 bits (115), Expect(2) = 5e-021
Identities = 20/29 (68%), Positives = 20/29 (68%)
Frame = +2 / -3
Query: 419 CVPSGTAGNKDECPCYRDMTTGHGNRTRP 505
CVPSGT GNKDECPCYRDM G P
Sbjct: 293 CVPSGTYGNKDECPCYRDMKNSKGTSKCP 207
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 1,707,271,645
Number of Sequences: 1013581
Number of extensions: 26075913
Number of successful extensions: 335017
Number of sequences better than 1.0e-020: 13
length of database: 302,980,290
effective HSP length: 56
effective length of database: 246,219,754
effective search space used: 57369202682
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)