TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2455862.2.1
(712 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
dbj|AB011482.1| Arabidopsis thaliana genomic DNA, chromosom... 76 6e-028
gb|AF163823.1|AF163823 Arabidopsis thaliana endoxyloglucan ... 76 6e-028
gb|AY125495.1| Arabidopsis thaliana AT5g57550/MUA2_12 mRNA,... 76 6e-028
ref|NM_125136.3| Arabidopsis thaliana XTR3 (XYLOGLUCAN ENDO... 76 6e-028
gb|U43485.1|ATU43485 Arabidopsis thaliana xyloglucan endotr... 76 6e-028
emb|AX412411.1| Sequence 175 from Patent WO0222675 76 6e-028
emb|AX412412.1| Sequence 176 from Patent WO0222675 76 6e-028
gb|AY143939.1| Arabidopsis thaliana At5g57550/MUA2_12 mRNA,... 76 6e-028
gb|AY057625.1| Arabidopsis thaliana AT5g57530/MUA2_10 mRNA,... 72 6e-026
ref|NM_125134.1| Arabidopsis thaliana hydrolase, acting on ... 72 6e-026
gb|AY113025.1| Arabidopsis thaliana AT5g57530/MUA2_10 mRNA,... 72 7e-026
ref|NM_125135.1| Arabidopsis thaliana hydrolase, acting on ... 70 9e-026
gb|U27609.1|ATU27609 Arabidopsis thaliana xyloglucan endo-t... 73 1e-025
ref|NM_125137.2| Arabidopsis thaliana TCH4 (TOUCH 4); hydro... 73 1e-025
gb|AY052712.1| Arabidopsis thaliana AT5g57560/MUA2_13 mRNA,... 73 1e-025
gb|AF051338.1|AF051338 Arabidopsis thaliana xyloglucan endo... 73 1e-025
gb|AF367262.1|AF367262 Arabidopsis thaliana AT5g57560/MUA2_... 73 1e-025
gb|AY055102.1| Arabidopsis thaliana AT5g57560/MUA2_13 mRNA,... 73 1e-025
gb|AF446881.1|AF446881 Arabidopsis thaliana AT5g57560/MUA2_... 73 1e-025
emb|AX412560.1| Sequence 324 from Patent WO0222675 73 1e-025
emb|AX506026.1| Sequence 721 from Patent WO0216655 73 1e-025
emb|AX590061.1| Sequence 243 from Patent WO02081695 73 1e-025
emb|AX651712.1| Sequence 543 from Patent WO03000898 73 1e-025
emb|CQ804250.1| Sequence 661 from Patent WO2004035798 73 1e-025
gb|AV544278.1|AV544278 AV544278 Arabidopsis thaliana roots ... 73 1e-025
dbj|AK220646.1| Arabidopsis thaliana mRNA for hypothetical ... 73 1e-025
emb|AJ270060.1| Arabidopsis thaliana DNA chromosome 4, long... 73 3e-025
emb|AL161564.2|ATCHRIV64 Arabidopsis thaliana DNA chromosom... 73 3e-025
emb|AL049480.1|ATF14M19 Arabidopsis thaliana DNA chromosome... 73 3e-025
ref|NM_118713.2| Arabidopsis thaliana XTR6 (XYLOGLUCAN ENDO... 73 3e-025
gb|AY062472.1| Arabidopsis thaliana xyloglucan endo-1, 4-be... 73 3e-025
gb|AY093252.1| Arabidopsis thaliana xyloglucan endo-1, 4-be... 73 3e-025
gb|U43488.1|ATU43488 Arabidopsis thaliana xyloglucan endotr... 73 3e-025
emb|AX506832.1| Sequence 1527 from Patent WO0216655 73 3e-025
emb|AX651785.1| Sequence 637 from Patent WO03000898 73 3e-025
emb|CQ804820.1| Sequence 1231 from Patent WO2004035798 73 3e-025
gb|CB252959.1|CB252959 13-E015332-019-005-J03-T7R MPIZ-ADIS... 73 3e-025
gb|AI996718.1|AI996718 701668066 A. thaliana, Columbia Col-... 73 3e-025
gb|CB253381.1|CB253381 03-E010699-019-002-F02-T7R MPIZ-ADIS... 73 3e-025
gb|CB255401.1|CB255401 42-E018427-019-008-C11-T7R MPIZ-ADIS... 73 4e-025
gb|AF093672.1|AF093672 Arabidopsis thaliana xyloglucan endo... 69 1e-024
ref|NM_118714.3| Arabidopsis thaliana XTR9 (XYLOGLUCAN ENDO... 69 1e-024
gb|AY093183.1| Arabidopsis thaliana putative xyloglucan end... 69 1e-024
gb|BT003385.1| Arabidopsis thaliana putative xyloglucan end... 69 1e-024
emb|AL091006.1|CNS00UHS Arabidopsis thaliana genome survey ... 69 2e-024
emb|BX833748.1|CNS0A0FK Arabidopsis thaliana Full-length cD... 68 3e-024
gb|AV544169.1|AV544169 AV544169 Arabidopsis thaliana roots ... 73 5e-024
gb|AV542095.1|AV542095 AV542095 Arabidopsis thaliana roots ... 66 3e-023
dbj|AB017064.1| Arabidopsis thaliana genomic DNA, chromosom... 71 6e-023
dbj|AK221454.1| Arabidopsis thaliana mRNA for xyloglucan en... 71 6e-023
ref|NM_124181.2| Arabidopsis thaliana ATXTH20; hydrolase, a... 71 6e-023
gb|BT012361.1| Arabidopsis thaliana At5g48070 mRNA, complet... 71 6e-023
gb|B26410.1|B26410 F2G24TF IGF Arabidopsis thaliana genomic... 71 6e-023
gb|AV538445.1|AV538445 AV538445 Arabidopsis thaliana roots ... 71 6e-023
gb|AV541439.1|AV541439 AV541439 Arabidopsis thaliana roots ... 66 9e-023
gb|AV788214.1|AV788214 AV788214 RAFL6 Arabidopsis thaliana ... 70 2e-022
emb|AL081142.1|CNS00MVS Arabidopsis thaliana genome survey ... 71 2e-022
gb|BP579270.1|BP579270 BP579270 RAFL14 Arabidopsis thaliana... 65 4e-022
emb|BX841567.1|CNS09YH8 Arabidopsis thaliana Full-length cD... 65 1e-021
gb|CB252973.1|CB252973 12-E018439-019-009-H03-T7R MPIZ-ADIS... 64 1e-021
gb|CB264561.1|CB264561 53-E013840-035-001-I13-T7R MPIZ-ADIS... 64 1e-021
emb|AL161576.2|ATCHRIV72 Arabidopsis thaliana DNA chromosom... 64 2e-021
emb|AL109796.1|ATF9N11 Arabidopsis thaliana DNA chromosome ... 64 2e-021
gb|AY085867.1| Arabidopsis thaliana clone 19156 mRNA, compl... 64 2e-021
ref|NM_119173.2| Arabidopsis thaliana MERI5B; hydrolase, ac... 64 2e-021
gb|AY035156.1| Arabidopsis thaliana putative xyloglucan end... 64 2e-021
dbj|D63508.1|ATHMERI5B Arabidopsis thaliana mRNA for endo x... 64 2e-021
emb|BX827295.1|CNS0A3PE Arabidopsis thaliana Full-length cD... 64 2e-021
emb|BX828349.1|CNS0A3XB Arabidopsis thaliana Full-length cD... 64 2e-021
emb|BX828351.1|CNS0A3Y7 Arabidopsis thaliana Full-length cD... 64 2e-021
emb|BX828132.1|CNS0A3RV Arabidopsis thaliana Full-length cD... 64 2e-021
emb|BX828320.1|CNS0A3UT Arabidopsis thaliana Full-length cD... 64 2e-021
emb|BX827292.1|CNS0A484 Arabidopsis thaliana Full-length cD... 64 2e-021
gb|AY063027.1| Arabidopsis thaliana putative xyloglucan end... 64 2e-021
emb|X82683.1|ATMERI5DA A.thaliana meri5da gene 64 2e-021
emb|AX507134.1| Sequence 1829 from Patent WO0216655 64 2e-021
emb|AX651600.1| Sequence 413 from Patent WO03000898 64 2e-021
emb|CQ803676.1| Sequence 87 from Patent WO2004035798 64 2e-021
gb|CB252648.1|CB252648 20-E018427-019-008-G05-T7R MPIZ-ADIS... 64 2e-021
gb|CB252811.1|CB252811 16-E015332-019-005-P03-T7R MPIZ-ADIS... 64 2e-021
gb|AV440692.1|AV440692 AV440692 Arabidopsis thaliana above-... 64 2e-021
gb|AV520277.1|AV520277 AV520277 Arabidopsis thaliana aboveg... 64 2e-021
gb|AV559812.1|AV559812 AV559812 Arabidopsis thaliana green ... 64 2e-021
gb|AV540448.1|AV540448 AV540448 Arabidopsis thaliana roots ... 64 2e-021
gb|CB253128.1|CB253128 09-E012992-019-004-A03-SP6r MPIZ-ADI... 64 2e-021
gb|CB254136.1|CB254136 78-E012992-019-004-K19-SP6r MPIZ-ADI... 64 2e-021
gb|AV562465.1|AV562465 AV562465 Arabidopsis thaliana green ... 64 2e-021
gb|AV559412.1|AV559412 AV559412 Arabidopsis thaliana green ... 64 2e-021
gb|AV561260.1|AV561260 AV561260 Arabidopsis thaliana green ... 64 2e-021
gb|AV536731.1|AV536731 AV536731 Arabidopsis thaliana liquid... 64 2e-021
gb|AV564095.1|AV564095 AV564095 Arabidopsis thaliana green ... 64 2e-021
gb|AV797796.1|AV797796 AV797796 RAFL9 Arabidopsis thaliana ... 65 3e-021
emb|BX827776.1|CNS0A2EQ Arabidopsis thaliana Full-length cD... 64 5e-021
emb|BX827180.1|CNS0A3QG Arabidopsis thaliana Full-length cD... 64 5e-021
gb|BP593532.1|BP593532 BP593532 RAFL15 Arabidopsis thaliana... 70 1e-020
>dbj|AB011482.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MUA2
Length = 83478
Score = 76.2 bits (160), Expect(2) = 6e-028
Identities = 27/53 (50%), Positives = 36/53 (67%)
Frame = +1 / -3
Query: 13 LAYPGGKPMSVHATLWDGSYWATQQGKVKVDWSAAPFAVSYRGYSADACVPDG 171
+ YP +PM ++++LW+ WAT+ G VK DWS APF SYR + ADACV G
Sbjct: 36319 IQYPKLQPMRLYSSLWNADQWATRGGLVKTDWSKAPFTASYRNFRADACVSSG 36161
Score = 73.5 bits (154), Expect(2) = 1e-025
Identities = 25/48 (52%), Positives = 34/48 (70%)
Frame = +1 / -3
Query: 19 YPGGKPMSVHATLWDGSYWATQQGKVKVDWSAAPFAVSYRGYSADACV 162
+P KPM ++++LW+ WAT+ G VK DWS APF SYRG+ +ACV
Sbjct: 38575 FPKNKPMRMYSSLWNADDWATRGGLVKTDWSKAPFTASYRGFQQEACV 38432
Score = 71.6 bits (150), Expect(2) = 6e-026
Identities = 24/49 (48%), Positives = 35/49 (71%)
Frame = +1 / -2
Query: 13 LAYPGGKPMSVHATLWDGSYWATQQGKVKVDWSAAPFAVSYRGYSADAC 159
+AYP +PM ++++LW+ WATQ GKVK DW+ APF+ SYR ++ C
Sbjct: 31745 VAYPKSQPMKIYSSLWEADDWATQGGKVKTDWTNAPFSASYRSFNDVDC 31599
Score = 70.3 bits (147), Expect(2) = 8e-026
Identities = 23/49 (46%), Positives = 35/49 (71%)
Frame = +1 / -1
Query: 13 LAYPGGKPMSVHATLWDGSYWATQQGKVKVDWSAAPFAVSYRGYSADAC 159
+AYP +PM ++++LW+ WATQ GKVK DW+ APF+ SY+ ++ C
Sbjct: 34272 VAYPKSQPMKIYSSLWEADDWATQGGKVKTDWTNAPFSASYKSFNDVDC 34126
Score = 70.3 bits (147), Expect(2) = 6e-028
Identities = 26/49 (53%), Positives = 32/49 (65%)
Frame = +1 / -3
Query: 187 SCPAGTDRWMSRQLDAAEWGTVAWARQNYMHYNYCDDGWRFPQGFPAEC 333
SCPAG+ RW S++LD + ++ YM YNYC D RFPQGFP EC
Sbjct: 36151 SCPAGSPRWFSQRLDLTAEDKMRVVQRKYMIYNYCTDTKRFPQGFPKEC 36005
Score = 68.9 bits (144), Expect(2) = 8e-026
Identities = 24/54 (44%), Positives = 36/54 (66%)
Frame = +1 / -1
Query: 184 LSCPAGTDRWMSRQLDAAEWGTVAWARQNYMHYNYCDDGWRFPQGFPAECSRN* 345
++C A ++ WM L++ ++G + W + +YM YNYC D RFPQG P EC+ N*
Sbjct: 34098 VTCNANSNSWMWTTLNSNQYGQMKWVQDDYMIYNYCTDFKRFPQGLPTECNLN* 33937
Score = 68.0 bits (142), Expect(2) = 6e-026
Identities = 26/65 (40%), Positives = 38/65 (58%)
Frame = +1 / -2
Query: 151 DACVPDGDGRPLSCPAGTDRWMSRQLDAAEWGTVAWARQNYMHYNYCDDGWRFPQGFPAE 330
D C ++C A ++ WM L++ + G + W +++YM YNYC D RFPQG P E
Sbjct: 31604 DCCSRTSIWNWVTCNANSNSWMWTTLNSNQLGQLKWVQKDYMIYNYCTDFKRFPQGLPTE 31425
Query: 331 CSRN* 345
C+ N*
Sbjct: 31424 CNLN* 31410
Score = 65.2 bits (136), Expect(2) = 1e-025
Identities = 22/44 (50%), Positives = 29/44 (65%)
Frame = +1 / -3
Query: 202 TDRWMSRQLDAAEWGTVAWARQNYMHYNYCDDGWRFPQGFPAEC 333
T W+S++LD+ + W ++NYM YNYC D RFPQG P EC
Sbjct: 38380 TGSWLSQELDSTAQQRMRWVQRNYMIYNYCTDAKRFPQGLPKEC 38249
>gb|AF163823.1|AF163823 Arabidopsis thaliana endoxyloglucan transferase (XTR3) gene, complete
cds
Length = 2703
Score = 76.2 bits (160), Expect(2) = 6e-028
Identities = 27/53 (50%), Positives = 36/53 (67%)
Frame = +1 / +3
Query: 13 LAYPGGKPMSVHATLWDGSYWATQQGKVKVDWSAAPFAVSYRGYSADACVPDG 171
+ YP +PM ++++LW+ WAT+ G VK DWS APF SYR + ADACV G
Sbjct: 2124 IQYPKLQPMRLYSSLWNADQWATRGGLVKTDWSKAPFTASYRNFRADACVSSG 2282
Score = 70.3 bits (147), Expect(2) = 6e-028
Identities = 26/49 (53%), Positives = 32/49 (65%)
Frame = +1 / +3
Query: 187 SCPAGTDRWMSRQLDAAEWGTVAWARQNYMHYNYCDDGWRFPQGFPAEC 333
SCPAG+ RW S++LD + ++ YM YNYC D RFPQGFP EC
Sbjct: 2292 SCPAGSPRWFSQRLDLTAEDKMRVVQRKYMIYNYCTDTKRFPQGFPKEC 2438
>gb|AY125495.1| Arabidopsis thaliana AT5g57550/MUA2_12 mRNA, complete cds
Length = 1060
Score = 76.2 bits (160), Expect(2) = 6e-028
Identities = 27/53 (50%), Positives = 36/53 (67%)
Frame = +1 / +2
Query: 13 LAYPGGKPMSVHATLWDGSYWATQQGKVKVDWSAAPFAVSYRGYSADACVPDG 171
+ YP +PM ++++LW+ WAT+ G VK DWS APF SYR + ADACV G
Sbjct: 569 IQYPKLQPMRLYSSLWNADQWATRGGLVKTDWSKAPFTASYRNFRADACVSSG 727
Score = 70.3 bits (147), Expect(2) = 6e-028
Identities = 26/49 (53%), Positives = 32/49 (65%)
Frame = +1 / +2
Query: 187 SCPAGTDRWMSRQLDAAEWGTVAWARQNYMHYNYCDDGWRFPQGFPAEC 333
SCPAG+ RW S++LD + ++ YM YNYC D RFPQGFP EC
Sbjct: 737 SCPAGSPRWFSQRLDLTAEDKMRVVQRKYMIYNYCTDTKRFPQGFPKEC 883
>ref|NM_125136.3| Arabidopsis thaliana XTR3 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 3);
hydrolase, acting on glycosyl bonds AT5G57550 (XTR3)
mRNA, complete cds
Length = 1059
Score = 76.2 bits (160), Expect(2) = 6e-028
Identities = 27/53 (50%), Positives = 36/53 (67%)
Frame = +1 / +2
Query: 13 LAYPGGKPMSVHATLWDGSYWATQQGKVKVDWSAAPFAVSYRGYSADACVPDG 171
+ YP +PM ++++LW+ WAT+ G VK DWS APF SYR + ADACV G
Sbjct: 569 IQYPKLQPMRLYSSLWNADQWATRGGLVKTDWSKAPFTASYRNFRADACVSSG 727
Score = 70.3 bits (147), Expect(2) = 6e-028
Identities = 26/49 (53%), Positives = 32/49 (65%)
Frame = +1 / +2
Query: 187 SCPAGTDRWMSRQLDAAEWGTVAWARQNYMHYNYCDDGWRFPQGFPAEC 333
SCPAG+ RW S++LD + ++ YM YNYC D RFPQGFP EC
Sbjct: 737 SCPAGSPRWFSQRLDLTAEDKMRVVQRKYMIYNYCTDTKRFPQGFPKEC 883
>gb|U43485.1|ATU43485 Arabidopsis thaliana xyloglucan endotransglycosylase-related
protein (XTR3) mRNA, 3' end, partial cds
Length = 1017
Score = 76.2 bits (160), Expect(2) = 6e-028
Identities = 27/53 (50%), Positives = 36/53 (67%)
Frame = +1 / +1
Query: 13 LAYPGGKPMSVHATLWDGSYWATQQGKVKVDWSAAPFAVSYRGYSADACVPDG 171
+ YP +PM ++++LW+ WAT+ G VK DWS APF SYR + ADACV G
Sbjct: 511 IQYPKLQPMRLYSSLWNADQWATRGGLVKTDWSKAPFTASYRNFRADACVSSG 669
Score = 70.3 bits (147), Expect(2) = 6e-028
Identities = 26/49 (53%), Positives = 32/49 (65%)
Frame = +1 / +1
Query: 187 SCPAGTDRWMSRQLDAAEWGTVAWARQNYMHYNYCDDGWRFPQGFPAEC 333
SCPAG+ RW S++LD + ++ YM YNYC D RFPQGFP EC
Sbjct: 679 SCPAGSPRWFSQRLDLTAEDKMRVVQRKYMIYNYCTDTKRFPQGFPKEC 825
>emb|AX412411.1| Sequence 175 from Patent WO0222675
Length = 855
Score = 76.2 bits (160), Expect(2) = 6e-028
Identities = 27/53 (50%), Positives = 36/53 (67%)
Frame = +1 / +1
Query: 13 LAYPGGKPMSVHATLWDGSYWATQQGKVKVDWSAAPFAVSYRGYSADACVPDG 171
+ YP +PM ++++LW+ WAT+ G VK DWS APF SYR + ADACV G
Sbjct: 532 IQYPKLQPMRLYSSLWNADQWATRGGLVKTDWSKAPFTASYRNFRADACVSSG 690
Score = 70.3 bits (147), Expect(2) = 6e-028
Identities = 26/49 (53%), Positives = 32/49 (65%)
Frame = +1 / +1
Query: 187 SCPAGTDRWMSRQLDAAEWGTVAWARQNYMHYNYCDDGWRFPQGFPAEC 333
SCPAG+ RW S++LD + ++ YM YNYC D RFPQGFP EC
Sbjct: 700 SCPAGSPRWFSQRLDLTAEDKMRVVQRKYMIYNYCTDTKRFPQGFPKEC 846
>emb|AX412412.1| Sequence 176 from Patent WO0222675
Length = 855
Score = 76.2 bits (160), Expect(2) = 6e-028
Identities = 27/53 (50%), Positives = 36/53 (67%)
Frame = +1 / +1
Query: 13 LAYPGGKPMSVHATLWDGSYWATQQGKVKVDWSAAPFAVSYRGYSADACVPDG 171
+ YP +PM ++++LW+ WAT+ G VK DWS APF SYR + ADACV G
Sbjct: 532 IQYPKLQPMRLYSSLWNADQWATRGGLVKTDWSKAPFTASYRNFRADACVSSG 690
Score = 70.3 bits (147), Expect(2) = 6e-028
Identities = 26/49 (53%), Positives = 32/49 (65%)
Frame = +1 / +1
Query: 187 SCPAGTDRWMSRQLDAAEWGTVAWARQNYMHYNYCDDGWRFPQGFPAEC 333
SCPAG+ RW S++LD + ++ YM YNYC D RFPQGFP EC
Sbjct: 700 SCPAGSPRWFSQRLDLTAEDKMRVVQRKYMIYNYCTDTKRFPQGFPKEC 846
>gb|AY143939.1| Arabidopsis thaliana At5g57550/MUA2_12 mRNA, complete cds
Length = 855
Score = 76.2 bits (160), Expect(2) = 6e-028
Identities = 27/53 (50%), Positives = 36/53 (67%)
Frame = +1 / +1
Query: 13 LAYPGGKPMSVHATLWDGSYWATQQGKVKVDWSAAPFAVSYRGYSADACVPDG 171
+ YP +PM ++++LW+ WAT+ G VK DWS APF SYR + ADACV G
Sbjct: 532 IQYPKLQPMRLYSSLWNADQWATRGGLVKTDWSKAPFTASYRNFRADACVSSG 690
Score = 70.3 bits (147), Expect(2) = 6e-028
Identities = 26/49 (53%), Positives = 32/49 (65%)
Frame = +1 / +1
Query: 187 SCPAGTDRWMSRQLDAAEWGTVAWARQNYMHYNYCDDGWRFPQGFPAEC 333
SCPAG+ RW S++LD + ++ YM YNYC D RFPQGFP EC
Sbjct: 700 SCPAGSPRWFSQRLDLTAEDKMRVVQRKYMIYNYCTDTKRFPQGFPKEC 846
>gb|AY057625.1| Arabidopsis thaliana AT5g57530/MUA2_10 mRNA, complete cds
Length = 1062
Score = 71.6 bits (150), Expect(2) = 6e-026
Identities = 24/49 (48%), Positives = 35/49 (71%)
Frame = +1 / +3
Query: 13 LAYPGGKPMSVHATLWDGSYWATQQGKVKVDWSAAPFAVSYRGYSADAC 159
+AYP +PM ++++LW+ WATQ GKVK DW+ APF+ SYR ++ C
Sbjct: 579 VAYPKSQPMKIYSSLWEADDWATQGGKVKTDWTNAPFSASYRSFNDVDC 725
Score = 68.0 bits (142), Expect(2) = 6e-026
Identities = 26/65 (40%), Positives = 38/65 (58%)
Frame = +1 / +3
Query: 151 DACVPDGDGRPLSCPAGTDRWMSRQLDAAEWGTVAWARQNYMHYNYCDDGWRFPQGFPAE 330
D C ++C A ++ WM L++ + G + W +++YM YNYC D RFPQG P E
Sbjct: 720 DCCSRTSIWNWVTCNANSNSWMWTTLNSNQLGQLKWVQKDYMIYNYCTDFKRFPQGLPTE 899
Query: 331 CSRN* 345
C+ N*
Sbjct: 900 CNLN* 914
>ref|NM_125134.1| Arabidopsis thaliana hydrolase, acting on glycosyl bonds /
hydrolase, hydrolyzing O-glycosyl compounds AT5G57530
mRNA, complete cds
Length = 1062
Score = 71.6 bits (150), Expect(2) = 6e-026
Identities = 24/49 (48%), Positives = 35/49 (71%)
Frame = +1 / +3
Query: 13 LAYPGGKPMSVHATLWDGSYWATQQGKVKVDWSAAPFAVSYRGYSADAC 159
+AYP +PM ++++LW+ WATQ GKVK DW+ APF+ SYR ++ C
Sbjct: 579 VAYPKSQPMKIYSSLWEADDWATQGGKVKTDWTNAPFSASYRSFNDVDC 725
Score = 68.0 bits (142), Expect(2) = 6e-026
Identities = 26/65 (40%), Positives = 38/65 (58%)
Frame = +1 / +3
Query: 151 DACVPDGDGRPLSCPAGTDRWMSRQLDAAEWGTVAWARQNYMHYNYCDDGWRFPQGFPAE 330
D C ++C A ++ WM L++ + G + W +++YM YNYC D RFPQG P E
Sbjct: 720 DCCSRTSIWNWVTCNANSNSWMWTTLNSNQLGQLKWVQKDYMIYNYCTDFKRFPQGLPTE 899
Query: 331 CSRN* 345
C+ N*
Sbjct: 900 CNLN* 914
>gb|AY113025.1| Arabidopsis thaliana AT5g57530/MUA2_10 mRNA, complete cds
Length = 858
Score = 71.6 bits (150), Expect(2) = 7e-026
Identities = 24/49 (48%), Positives = 35/49 (71%)
Frame = +1 / +1
Query: 13 LAYPGGKPMSVHATLWDGSYWATQQGKVKVDWSAAPFAVSYRGYSADAC 159
+AYP +PM ++++LW+ WATQ GKVK DW+ APF+ SYR ++ C
Sbjct: 523 VAYPKSQPMKIYSSLWEADDWATQGGKVKTDWTNAPFSASYRSFNDVDC 669
Score = 68.0 bits (142), Expect(2) = 7e-026
Identities = 26/65 (40%), Positives = 38/65 (58%)
Frame = +1 / +1
Query: 151 DACVPDGDGRPLSCPAGTDRWMSRQLDAAEWGTVAWARQNYMHYNYCDDGWRFPQGFPAE 330
D C ++C A ++ WM L++ + G + W +++YM YNYC D RFPQG P E
Sbjct: 664 DCCSRTSIWNWVTCNANSNSWMWTTLNSNQLGQLKWVQKDYMIYNYCTDFKRFPQGLPTE 843
Query: 331 CSRN* 345
C+ N*
Sbjct: 844 CNLN* 858
>ref|NM_125135.1| Arabidopsis thaliana hydrolase, acting on glycosyl bonds /
hydrolase, hydrolyzing O-glycosyl compounds AT5G57540
mRNA, complete cds
Length = 855
Score = 70.3 bits (147), Expect(2) = 9e-026
Identities = 23/49 (46%), Positives = 35/49 (71%)
Frame = +1 / +1
Query: 13 LAYPGGKPMSVHATLWDGSYWATQQGKVKVDWSAAPFAVSYRGYSADAC 159
+AYP +PM ++++LW+ WATQ GKVK DW+ APF+ SY+ ++ C
Sbjct: 520 VAYPKSQPMKIYSSLWEADDWATQGGKVKTDWTNAPFSASYKSFNDVDC 666
Score = 68.9 bits (144), Expect(2) = 9e-026
Identities = 24/54 (44%), Positives = 36/54 (66%)
Frame = +1 / +1
Query: 184 LSCPAGTDRWMSRQLDAAEWGTVAWARQNYMHYNYCDDGWRFPQGFPAECSRN* 345
++C A ++ WM L++ ++G + W + +YM YNYC D RFPQG P EC+ N*
Sbjct: 694 VTCNANSNSWMWTTLNSNQYGQMKWVQDDYMIYNYCTDFKRFPQGLPTECNLN* 855
>gb|U27609.1|ATU27609 Arabidopsis thaliana xyloglucan endo-transglycosylase (TCH4) gene,
complete cds
Length = 1141
Score = 73.5 bits (154), Expect(2) = 1e-025
Identities = 25/48 (52%), Positives = 34/48 (70%)
Frame = +1 / +3
Query: 19 YPGGKPMSVHATLWDGSYWATQQGKVKVDWSAAPFAVSYRGYSADACV 162
+P KPM ++++LW+ WAT+ G VK DWS APF SYRG+ +ACV
Sbjct: 651 FPKNKPMRMYSSLWNADDWATRGGLVKTDWSKAPFTASYRGFQQEACV 794
Score = 65.2 bits (136), Expect(2) = 1e-025
Identities = 22/44 (50%), Positives = 29/44 (65%)
Frame = +1 / +3
Query: 202 TDRWMSRQLDAAEWGTVAWARQNYMHYNYCDDGWRFPQGFPAEC 333
T W+S++LD+ + W ++NYM YNYC D RFPQG P EC
Sbjct: 846 TGSWLSQELDSTAQQRMRWVQRNYMIYNYCTDAKRFPQGLPKEC 977
>ref|NM_125137.2| Arabidopsis thaliana TCH4 (TOUCH 4); hydrolase, acting on glycosyl
bonds / hydrolase, hydrolyzing O-glycosyl compounds
AT5G57560 (TCH4) mRNA, complete cds
Length = 1067
Score = 73.5 bits (154), Expect(2) = 1e-025
Identities = 25/48 (52%), Positives = 34/48 (70%)
Frame = +1 / +2
Query: 19 YPGGKPMSVHATLWDGSYWATQQGKVKVDWSAAPFAVSYRGYSADACV 162
+P KPM ++++LW+ WAT+ G VK DWS APF SYRG+ +ACV
Sbjct: 563 FPKNKPMRMYSSLWNADDWATRGGLVKTDWSKAPFTASYRGFQQEACV 706
Score = 65.2 bits (136), Expect(2) = 1e-025
Identities = 22/44 (50%), Positives = 29/44 (65%)
Frame = +1 / +2
Query: 202 TDRWMSRQLDAAEWGTVAWARQNYMHYNYCDDGWRFPQGFPAEC 333
T W+S++LD+ + W ++NYM YNYC D RFPQG P EC
Sbjct: 758 TGSWLSQELDSTAQQRMRWVQRNYMIYNYCTDAKRFPQGLPKEC 889
>gb|AY052712.1| Arabidopsis thaliana AT5g57560/MUA2_13 mRNA, complete cds
Length = 1061
Score = 73.5 bits (154), Expect(2) = 1e-025
Identities = 25/48 (52%), Positives = 34/48 (70%)
Frame = +1 / +2
Query: 19 YPGGKPMSVHATLWDGSYWATQQGKVKVDWSAAPFAVSYRGYSADACV 162
+P KPM ++++LW+ WAT+ G VK DWS APF SYRG+ +ACV
Sbjct: 563 FPKNKPMRMYSSLWNADDWATRGGLVKTDWSKAPFTASYRGFQQEACV 706
Score = 65.2 bits (136), Expect(2) = 1e-025
Identities = 22/44 (50%), Positives = 29/44 (65%)
Frame = +1 / +2
Query: 202 TDRWMSRQLDAAEWGTVAWARQNYMHYNYCDDGWRFPQGFPAEC 333
T W+S++LD+ + W ++NYM YNYC D RFPQG P EC
Sbjct: 758 TGSWLSQELDSTAQQRMRWVQRNYMIYNYCTDAKRFPQGLPKEC 889
>gb|AF051338.1|AF051338 Arabidopsis thaliana xyloglucan endotransglycosylase related
protein (TCH4) mRNA, complete cds
Length = 1016
Score = 73.5 bits (154), Expect(2) = 1e-025
Identities = 25/48 (52%), Positives = 34/48 (70%)
Frame = +1 / +1
Query: 19 YPGGKPMSVHATLWDGSYWATQQGKVKVDWSAAPFAVSYRGYSADACV 162
+P KPM ++++LW+ WAT+ G VK DWS APF SYRG+ +ACV
Sbjct: 517 FPKNKPMRMYSSLWNADDWATRGGLVKTDWSKAPFTASYRGFQQEACV 660
Score = 65.2 bits (136), Expect(2) = 1e-025
Identities = 22/44 (50%), Positives = 29/44 (65%)
Frame = +1 / +1
Query: 202 TDRWMSRQLDAAEWGTVAWARQNYMHYNYCDDGWRFPQGFPAEC 333
T W+S++LD+ + W ++NYM YNYC D RFPQG P EC
Sbjct: 712 TGSWLSQELDSTAQQRMRWVQRNYMIYNYCTDAKRFPQGLPKEC 843
>gb|AF367262.1|AF367262 Arabidopsis thaliana AT5g57560/MUA2_13 mRNA, complete cds
Length = 994
Score = 73.5 bits (154), Expect(2) = 1e-025
Identities = 25/48 (52%), Positives = 34/48 (70%)
Frame = +1 / +2
Query: 19 YPGGKPMSVHATLWDGSYWATQQGKVKVDWSAAPFAVSYRGYSADACV 162
+P KPM ++++LW+ WAT+ G VK DWS APF SYRG+ +ACV
Sbjct: 563 FPKNKPMRMYSSLWNADDWATRGGLVKTDWSKAPFTASYRGFQQEACV 706
Score = 65.2 bits (136), Expect(2) = 1e-025
Identities = 22/44 (50%), Positives = 29/44 (65%)
Frame = +1 / +2
Query: 202 TDRWMSRQLDAAEWGTVAWARQNYMHYNYCDDGWRFPQGFPAEC 333
T W+S++LD+ + W ++NYM YNYC D RFPQG P EC
Sbjct: 758 TGSWLSQELDSTAQQRMRWVQRNYMIYNYCTDAKRFPQGLPKEC 889
>gb|AY055102.1| Arabidopsis thaliana AT5g57560/MUA2_13 mRNA, complete cds
Length = 855
Score = 73.5 bits (154), Expect(2) = 1e-025
Identities = 25/48 (52%), Positives = 34/48 (70%)
Frame = +1 / +1
Query: 19 YPGGKPMSVHATLWDGSYWATQQGKVKVDWSAAPFAVSYRGYSADACV 162
+P KPM ++++LW+ WAT+ G VK DWS APF SYRG+ +ACV
Sbjct: 517 FPKNKPMRMYSSLWNADDWATRGGLVKTDWSKAPFTASYRGFQQEACV 660
Score = 65.2 bits (136), Expect(2) = 1e-025
Identities = 22/44 (50%), Positives = 29/44 (65%)
Frame = +1 / +1
Query: 202 TDRWMSRQLDAAEWGTVAWARQNYMHYNYCDDGWRFPQGFPAEC 333
T W+S++LD+ + W ++NYM YNYC D RFPQG P EC
Sbjct: 712 TGSWLSQELDSTAQQRMRWVQRNYMIYNYCTDAKRFPQGLPKEC 843
>gb|AF446881.1|AF446881 Arabidopsis thaliana AT5g57560/MUA2_13 mRNA, complete cds
Length = 855
Score = 73.5 bits (154), Expect(2) = 1e-025
Identities = 25/48 (52%), Positives = 34/48 (70%)
Frame = +1 / +1
Query: 19 YPGGKPMSVHATLWDGSYWATQQGKVKVDWSAAPFAVSYRGYSADACV 162
+P KPM ++++LW+ WAT+ G VK DWS APF SYRG+ +ACV
Sbjct: 517 FPKNKPMRMYSSLWNADDWATRGGLVKTDWSKAPFTASYRGFQQEACV 660
Score = 65.2 bits (136), Expect(2) = 1e-025
Identities = 22/44 (50%), Positives = 29/44 (65%)
Frame = +1 / +1
Query: 202 TDRWMSRQLDAAEWGTVAWARQNYMHYNYCDDGWRFPQGFPAEC 333
T W+S++LD+ + W ++NYM YNYC D RFPQG P EC
Sbjct: 712 TGSWLSQELDSTAQQRMRWVQRNYMIYNYCTDAKRFPQGLPKEC 843
>emb|AX412560.1| Sequence 324 from Patent WO0222675
Length = 855
Score = 73.5 bits (154), Expect(2) = 1e-025
Identities = 25/48 (52%), Positives = 34/48 (70%)
Frame = +1 / +1
Query: 19 YPGGKPMSVHATLWDGSYWATQQGKVKVDWSAAPFAVSYRGYSADACV 162
+P KPM ++++LW+ WAT+ G VK DWS APF SYRG+ +ACV
Sbjct: 517 FPKNKPMRMYSSLWNADDWATRGGLVKTDWSKAPFTASYRGFQQEACV 660
Score = 65.2 bits (136), Expect(2) = 1e-025
Identities = 22/44 (50%), Positives = 29/44 (65%)
Frame = +1 / +1
Query: 202 TDRWMSRQLDAAEWGTVAWARQNYMHYNYCDDGWRFPQGFPAEC 333
T W+S++LD+ + W ++NYM YNYC D RFPQG P EC
Sbjct: 712 TGSWLSQELDSTAQQRMRWVQRNYMIYNYCTDAKRFPQGLPKEC 843
>emb|AX506026.1| Sequence 721 from Patent WO0216655
Length = 855
Score = 73.5 bits (154), Expect(2) = 1e-025
Identities = 25/48 (52%), Positives = 34/48 (70%)
Frame = +1 / +1
Query: 19 YPGGKPMSVHATLWDGSYWATQQGKVKVDWSAAPFAVSYRGYSADACV 162
+P KPM ++++LW+ WAT+ G VK DWS APF SYRG+ +ACV
Sbjct: 517 FPKNKPMRMYSSLWNADDWATRGGLVKTDWSKAPFTASYRGFQQEACV 660
Score = 65.2 bits (136), Expect(2) = 1e-025
Identities = 22/44 (50%), Positives = 29/44 (65%)
Frame = +1 / +1
Query: 202 TDRWMSRQLDAAEWGTVAWARQNYMHYNYCDDGWRFPQGFPAEC 333
T W+S++LD+ + W ++NYM YNYC D RFPQG P EC
Sbjct: 712 TGSWLSQELDSTAQQRMRWVQRNYMIYNYCTDAKRFPQGLPKEC 843
>emb|AX590061.1| Sequence 243 from Patent WO02081695
Length = 855
Score = 73.5 bits (154), Expect(2) = 1e-025
Identities = 25/48 (52%), Positives = 34/48 (70%)
Frame = +1 / +1
Query: 19 YPGGKPMSVHATLWDGSYWATQQGKVKVDWSAAPFAVSYRGYSADACV 162
+P KPM ++++LW+ WAT+ G VK DWS APF SYRG+ +ACV
Sbjct: 517 FPKNKPMRMYSSLWNADDWATRGGLVKTDWSKAPFTASYRGFQQEACV 660
Score = 65.2 bits (136), Expect(2) = 1e-025
Identities = 22/44 (50%), Positives = 29/44 (65%)
Frame = +1 / +1
Query: 202 TDRWMSRQLDAAEWGTVAWARQNYMHYNYCDDGWRFPQGFPAEC 333
T W+S++LD+ + W ++NYM YNYC D RFPQG P EC
Sbjct: 712 TGSWLSQELDSTAQQRMRWVQRNYMIYNYCTDAKRFPQGLPKEC 843
>emb|AX651712.1| Sequence 543 from Patent WO03000898
Length = 855
Score = 73.5 bits (154), Expect(2) = 1e-025
Identities = 25/48 (52%), Positives = 34/48 (70%)
Frame = +1 / +1
Query: 19 YPGGKPMSVHATLWDGSYWATQQGKVKVDWSAAPFAVSYRGYSADACV 162
+P KPM ++++LW+ WAT+ G VK DWS APF SYRG+ +ACV
Sbjct: 517 FPKNKPMRMYSSLWNADDWATRGGLVKTDWSKAPFTASYRGFQQEACV 660
Score = 65.2 bits (136), Expect(2) = 1e-025
Identities = 22/44 (50%), Positives = 29/44 (65%)
Frame = +1 / +1
Query: 202 TDRWMSRQLDAAEWGTVAWARQNYMHYNYCDDGWRFPQGFPAEC 333
T W+S++LD+ + W ++NYM YNYC D RFPQG P EC
Sbjct: 712 TGSWLSQELDSTAQQRMRWVQRNYMIYNYCTDAKRFPQGLPKEC 843
>emb|CQ804250.1| Sequence 661 from Patent WO2004035798
Length = 855
Score = 73.5 bits (154), Expect(2) = 1e-025
Identities = 25/48 (52%), Positives = 34/48 (70%)
Frame = +1 / +1
Query: 19 YPGGKPMSVHATLWDGSYWATQQGKVKVDWSAAPFAVSYRGYSADACV 162
+P KPM ++++LW+ WAT+ G VK DWS APF SYRG+ +ACV
Sbjct: 517 FPKNKPMRMYSSLWNADDWATRGGLVKTDWSKAPFTASYRGFQQEACV 660
Score = 65.2 bits (136), Expect(2) = 1e-025
Identities = 22/44 (50%), Positives = 29/44 (65%)
Frame = +1 / +1
Query: 202 TDRWMSRQLDAAEWGTVAWARQNYMHYNYCDDGWRFPQGFPAEC 333
T W+S++LD+ + W ++NYM YNYC D RFPQG P EC
Sbjct: 712 TGSWLSQELDSTAQQRMRWVQRNYMIYNYCTDAKRFPQGLPKEC 843
>gb|AV544278.1|AV544278 AV544278 Arabidopsis thaliana roots Columbia Arabidopsis thaliana
cDNA clone RZ38d07F 3', mRNA sequence
Length = 650
Score = 73.5 bits (154), Expect(2) = 1e-025
Identities = 25/48 (52%), Positives = 34/48 (70%)
Frame = +1 / -1
Query: 19 YPGGKPMSVHATLWDGSYWATQQGKVKVDWSAAPFAVSYRGYSADACV 162
+P KPM ++++LW+ WAT+ G VK DWS APF SYRG+ +ACV
Sbjct: 464 FPKNKPMRMYSSLWNADDWATRGGLVKTDWSKAPFTASYRGFQQEACV 321
Score = 65.2 bits (136), Expect(2) = 1e-025
Identities = 22/44 (50%), Positives = 29/44 (65%)
Frame = +1 / -1
Query: 202 TDRWMSRQLDAAEWGTVAWARQNYMHYNYCDDGWRFPQGFPAEC 333
T W+S++LD+ + W ++NYM YNYC D RFPQG P EC
Sbjct: 269 TGSWLSQELDSTAQQRMRWVQRNYMIYNYCTDAKRFPQGLPKEC 138
>dbj|AK220646.1| Arabidopsis thaliana mRNA for hypothetical protein, complete cds,
clone: RAFL21-63-O10
Length = 607
Score = 73.5 bits (154), Expect(2) = 1e-025
Identities = 25/48 (52%), Positives = 34/48 (70%)
Frame = +1 / -3
Query: 19 YPGGKPMSVHATLWDGSYWATQQGKVKVDWSAAPFAVSYRGYSADACV 162
+P KPM ++++LW+ WAT+ G VK DWS APF SYRG+ +ACV
Sbjct: 365 FPKNKPMRMYSSLWNADDWATRGGLVKTDWSKAPFTASYRGFQQEACV 222
Score = 65.2 bits (136), Expect(2) = 1e-025
Identities = 22/44 (50%), Positives = 29/44 (65%)
Frame = +1 / -3
Query: 202 TDRWMSRQLDAAEWGTVAWARQNYMHYNYCDDGWRFPQGFPAEC 333
T W+S++LD+ + W ++NYM YNYC D RFPQG P EC
Sbjct: 170 TGSWLSQELDSTAQQRMRWVQRNYMIYNYCTDAKRFPQGLPKEC 39
>emb|AJ270060.1| Arabidopsis thaliana DNA chromosome 4, long arm
Length = 14497843
Score = 72.5 bits (152), Expect(2) = 3e-025
Identities = 24/48 (50%), Positives = 35/48 (72%)
Frame = +1 / +2
Query: 19 YPGGKPMSVHATLWDGSYWATQQGKVKVDWSAAPFAVSYRGYSADACV 162
+P +PM ++++LW+ WAT+ G VK DWS APF SYRG++ +ACV
Sbjct: 9042155 FPKNQPMRMYSSLWNAEEWATRGGLVKTDWSKAPFTASYRGFNEEACV 9042298
Score = 69.3 bits (145), Expect(2) = 1e-024
Identities = 22/45 (48%), Positives = 34/45 (75%)
Frame = +1 / +3
Query: 13 LAYPGGKPMSVHATLWDGSYWATQQGKVKVDWSAAPFAVSYRGYS 147
+AYP +PM ++++LW+ WAT+ G+VK+DWS APF SYR ++
Sbjct: 9044058 VAYPKNQPMRIYSSLWEADDWATEGGRVKIDWSNAPFKASYRNFN 9044192
Score = 65.7 bits (137), Expect(2) = 1e-024
Identities = 22/60 (36%), Positives = 36/60 (60%)
Frame = +1 / +3
Query: 154 ACVPDGDGRPLSCPAGTDRWMSRQLDAAEWGTVAWARQNYMHYNYCDDGWRFPQGFPAEC 333
+C + ++C ++ WM L+ A++G + W ++++M YNYC D RFPQG P EC
Sbjct: 9044202 SCSRTSSSKWVTCEPNSNSWMWTTLNPAQYGKMMWVQRDFMIYNYCTDFKRFPQGLPKEC 9044381
Score = 64.8 bits (135), Expect(2) = 3e-025
Identities = 23/50 (46%), Positives = 30/50 (60%)
Frame = +1 / +2
Query: 184 LSCPAGTDRWMSRQLDAAEWGTVAWARQNYMHYNYCDDGWRFPQGFPAEC 333
+S T W+S++LD+ + W + NYM YNYC D RFPQG P EC
Sbjct: 9042329 VSGQGSTGSWLSQELDSTGQEQMRWVQNNYMIYNYCTDAKRFPQGLPREC 9042478
Score = 64.3 bits (134), Expect(2) = 2e-021
Identities = 23/46 (50%), Positives = 30/46 (65%)
Frame = +1 / -2
Query: 19 YPGGKPMSVHATLWDGSYWATQQGKVKVDWSAAPFAVSYRGYSADA 156
+P KPM ++A+LW+ WAT+ G VK DWS APF SYR D+
Sbjct: 10732512 FPKNKPMRMYASLWNADDWATRGGLVKTDWSKAPFMASYRNIKIDS 10732375
Score = 60.2 bits (125), Expect(2) = 2e-021
Identities = 19/42 (45%), Positives = 28/42 (66%)
Frame = +1 / -2
Query: 211 WMSRQLDAAEWGTVAWARQNYMHYNYCDDGWRFPQGFPAECS 336
W ++++D+ + W ++NYM YNYC D RFPQG P EC+
Sbjct: 10732359 WYTQEMDSTSQARLKWVQKNYMIYNYCTDHRRFPQGAPKECT 10732234
>emb|AL161564.2|ATCHRIV64 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 64
Length = 196286
Score = 72.5 bits (152), Expect(2) = 3e-025
Identities = 24/48 (50%), Positives = 35/48 (72%)
Frame = +1 / +1
Query: 19 YPGGKPMSVHATLWDGSYWATQQGKVKVDWSAAPFAVSYRGYSADACV 162
+P +PM ++++LW+ WAT+ G VK DWS APF SYRG++ +ACV
Sbjct: 17842 FPKNQPMRMYSSLWNAEEWATRGGLVKTDWSKAPFTASYRGFNEEACV 17985
Score = 69.3 bits (145), Expect(2) = 1e-024
Identities = 22/45 (48%), Positives = 34/45 (75%)
Frame = +1 / +2
Query: 13 LAYPGGKPMSVHATLWDGSYWATQQGKVKVDWSAAPFAVSYRGYS 147
+AYP +PM ++++LW+ WAT+ G+VK+DWS APF SYR ++
Sbjct: 19745 VAYPKNQPMRIYSSLWEADDWATEGGRVKIDWSNAPFKASYRNFN 19879
Score = 65.7 bits (137), Expect(2) = 1e-024
Identities = 22/60 (36%), Positives = 36/60 (60%)
Frame = +1 / +2
Query: 154 ACVPDGDGRPLSCPAGTDRWMSRQLDAAEWGTVAWARQNYMHYNYCDDGWRFPQGFPAEC 333
+C + ++C ++ WM L+ A++G + W ++++M YNYC D RFPQG P EC
Sbjct: 19889 SCSRTSSSKWVTCEPNSNSWMWTTLNPAQYGKMMWVQRDFMIYNYCTDFKRFPQGLPKEC 20068
Score = 64.8 bits (135), Expect(2) = 3e-025
Identities = 23/50 (46%), Positives = 30/50 (60%)
Frame = +1 / +1
Query: 184 LSCPAGTDRWMSRQLDAAEWGTVAWARQNYMHYNYCDDGWRFPQGFPAEC 333
+S T W+S++LD+ + W + NYM YNYC D RFPQG P EC
Sbjct: 18016 VSGQGSTGSWLSQELDSTGQEQMRWVQNNYMIYNYCTDAKRFPQGLPREC 18165
>emb|AL049480.1|ATF14M19 Arabidopsis thaliana DNA chromosome 4, BAC clone F14M19 (ESSA project)
Length = 91228
Score = 72.5 bits (152), Expect(2) = 3e-025
Identities = 24/48 (50%), Positives = 35/48 (72%)
Frame = +1 / +3
Query: 19 YPGGKPMSVHATLWDGSYWATQQGKVKVDWSAAPFAVSYRGYSADACV 162
+P +PM ++++LW+ WAT+ G VK DWS APF SYRG++ +ACV
Sbjct: 26763 FPKNQPMRMYSSLWNAEEWATRGGLVKTDWSKAPFTASYRGFNEEACV 26906
Score = 69.3 bits (145), Expect(2) = 1e-024
Identities = 22/45 (48%), Positives = 34/45 (75%)
Frame = +1 / +1
Query: 13 LAYPGGKPMSVHATLWDGSYWATQQGKVKVDWSAAPFAVSYRGYS 147
+AYP +PM ++++LW+ WAT+ G+VK+DWS APF SYR ++
Sbjct: 28666 VAYPKNQPMRIYSSLWEADDWATEGGRVKIDWSNAPFKASYRNFN 28800
Score = 65.7 bits (137), Expect(2) = 1e-024
Identities = 22/60 (36%), Positives = 36/60 (60%)
Frame = +1 / +1
Query: 154 ACVPDGDGRPLSCPAGTDRWMSRQLDAAEWGTVAWARQNYMHYNYCDDGWRFPQGFPAEC 333
+C + ++C ++ WM L+ A++G + W ++++M YNYC D RFPQG P EC
Sbjct: 28810 SCSRTSSSKWVTCEPNSNSWMWTTLNPAQYGKMMWVQRDFMIYNYCTDFKRFPQGLPKEC 28989
Score = 64.8 bits (135), Expect(2) = 3e-025
Identities = 23/50 (46%), Positives = 30/50 (60%)
Frame = +1 / +3
Query: 184 LSCPAGTDRWMSRQLDAAEWGTVAWARQNYMHYNYCDDGWRFPQGFPAEC 333
+S T W+S++LD+ + W + NYM YNYC D RFPQG P EC
Sbjct: 26937 VSGQGSTGSWLSQELDSTGQEQMRWVQNNYMIYNYCTDAKRFPQGLPREC 27086
>ref|NM_118713.2| Arabidopsis thaliana XTR6 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 6);
hydrolase, acting on glycosyl bonds / hydrolase,
hydrolyzing O-glycosyl compounds AT4G25810 (XTR6) mRNA,
complete cds
Length = 1078
Score = 72.5 bits (152), Expect(2) = 3e-025
Identities = 24/48 (50%), Positives = 35/48 (72%)
Frame = +1 / +1
Query: 19 YPGGKPMSVHATLWDGSYWATQQGKVKVDWSAAPFAVSYRGYSADACV 162
+P +PM ++++LW+ WAT+ G VK DWS APF SYRG++ +ACV
Sbjct: 574 FPKNQPMRMYSSLWNAEEWATRGGLVKTDWSKAPFTASYRGFNEEACV 717
Score = 64.8 bits (135), Expect(2) = 3e-025
Identities = 23/50 (46%), Positives = 30/50 (60%)
Frame = +1 / +1
Query: 184 LSCPAGTDRWMSRQLDAAEWGTVAWARQNYMHYNYCDDGWRFPQGFPAEC 333
+S T W+S++LD+ + W + NYM YNYC D RFPQG P EC
Sbjct: 748 VSGQGSTGSWLSQELDSTGQEQMRWVQNNYMIYNYCTDAKRFPQGLPREC 897
>gb|AY062472.1| Arabidopsis thaliana xyloglucan endo-1, 4-beta-D-glucanase (XTR-6)
(At4g25810; F14M19.90) mRNA, complete cds
Length = 1053
Score = 72.5 bits (152), Expect(2) = 3e-025
Identities = 24/48 (50%), Positives = 35/48 (72%)
Frame = +1 / +1
Query: 19 YPGGKPMSVHATLWDGSYWATQQGKVKVDWSAAPFAVSYRGYSADACV 162
+P +PM ++++LW+ WAT+ G VK DWS APF SYRG++ +ACV
Sbjct: 574 FPKNQPMRMYSSLWNAEEWATRGGLVKTDWSKAPFTASYRGFNEEACV 717
Score = 64.8 bits (135), Expect(2) = 3e-025
Identities = 23/50 (46%), Positives = 30/50 (60%)
Frame = +1 / +1
Query: 184 LSCPAGTDRWMSRQLDAAEWGTVAWARQNYMHYNYCDDGWRFPQGFPAEC 333
+S T W+S++LD+ + W + NYM YNYC D RFPQG P EC
Sbjct: 748 VSGQGSTGSWLSQELDSTGQEQMRWVQNNYMIYNYCTDAKRFPQGLPREC 897
>gb|AY093252.1| Arabidopsis thaliana xyloglucan endo-1, 4-beta-D-glucanase
(At4g25810) mRNA, complete cds
Length = 891
Score = 72.5 bits (152), Expect(2) = 3e-025
Identities = 24/48 (50%), Positives = 35/48 (72%)
Frame = +1 / +1
Query: 19 YPGGKPMSVHATLWDGSYWATQQGKVKVDWSAAPFAVSYRGYSADACV 162
+P +PM ++++LW+ WAT+ G VK DWS APF SYRG++ +ACV
Sbjct: 526 FPKNQPMRMYSSLWNAEEWATRGGLVKTDWSKAPFTASYRGFNEEACV 669
Score = 64.8 bits (135), Expect(2) = 3e-025
Identities = 23/50 (46%), Positives = 30/50 (60%)
Frame = +1 / +1
Query: 184 LSCPAGTDRWMSRQLDAAEWGTVAWARQNYMHYNYCDDGWRFPQGFPAEC 333
+S T W+S++LD+ + W + NYM YNYC D RFPQG P EC
Sbjct: 700 VSGQGSTGSWLSQELDSTGQEQMRWVQNNYMIYNYCTDAKRFPQGLPREC 849
>gb|U43488.1|ATU43488 Arabidopsis thaliana xyloglucan endotransglycosylase-related
protein (XTR6) mRNA, complete cds
Length = 885
Score = 72.5 bits (152), Expect(2) = 3e-025
Identities = 24/48 (50%), Positives = 35/48 (72%)
Frame = +1 / +1
Query: 19 YPGGKPMSVHATLWDGSYWATQQGKVKVDWSAAPFAVSYRGYSADACV 162
+P +PM ++++LW+ WAT+ G VK DWS APF SYRG++ +ACV
Sbjct: 526 FPKNQPMRMYSSLWNAEEWATRGGLVKTDWSKAPFTASYRGFNEEACV 669
Score = 64.8 bits (135), Expect(2) = 3e-025
Identities = 23/50 (46%), Positives = 30/50 (60%)
Frame = +1 / +1
Query: 184 LSCPAGTDRWMSRQLDAAEWGTVAWARQNYMHYNYCDDGWRFPQGFPAEC 333
+S T W+S++LD+ + W + NYM YNYC D RFPQG P EC
Sbjct: 700 VSGQGSTGSWLSQELDSTGQEQMRWVQNNYMIYNYCTDAKRFPQGLPREC 849
>emb|AX506832.1| Sequence 1527 from Patent WO0216655
Length = 861
Score = 72.5 bits (152), Expect(2) = 3e-025
Identities = 24/48 (50%), Positives = 35/48 (72%)
Frame = +1 / +1
Query: 19 YPGGKPMSVHATLWDGSYWATQQGKVKVDWSAAPFAVSYRGYSADACV 162
+P +PM ++++LW+ WAT+ G VK DWS APF SYRG++ +ACV
Sbjct: 526 FPKNQPMRMYSSLWNAEEWATRGGLVKTDWSKAPFTASYRGFNEEACV 669
Score = 64.8 bits (135), Expect(2) = 3e-025
Identities = 23/50 (46%), Positives = 30/50 (60%)
Frame = +1 / +1
Query: 184 LSCPAGTDRWMSRQLDAAEWGTVAWARQNYMHYNYCDDGWRFPQGFPAEC 333
+S T W+S++LD+ + W + NYM YNYC D RFPQG P EC
Sbjct: 700 VSGQGSTGSWLSQELDSTGQEQMRWVQNNYMIYNYCTDAKRFPQGLPREC 849
>emb|AX651785.1| Sequence 637 from Patent WO03000898
Length = 860
Score = 72.5 bits (152), Expect(2) = 3e-025
Identities = 24/48 (50%), Positives = 35/48 (72%)
Frame = +1 / +1
Query: 19 YPGGKPMSVHATLWDGSYWATQQGKVKVDWSAAPFAVSYRGYSADACV 162
+P +PM ++++LW+ WAT+ G VK DWS APF SYRG++ +ACV
Sbjct: 526 FPKNQPMRMYSSLWNAEEWATRGGLVKTDWSKAPFTASYRGFNEEACV 669
Score = 64.8 bits (135), Expect(2) = 3e-025
Identities = 23/50 (46%), Positives = 30/50 (60%)
Frame = +1 / +1
Query: 184 LSCPAGTDRWMSRQLDAAEWGTVAWARQNYMHYNYCDDGWRFPQGFPAEC 333
+S T W+S++LD+ + W + NYM YNYC D RFPQG P EC
Sbjct: 700 VSGQGSTGSWLSQELDSTGQEQMRWVQNNYMIYNYCTDAKRFPQGLPREC 849
>emb|CQ804820.1| Sequence 1231 from Patent WO2004035798
Length = 861
Score = 72.5 bits (152), Expect(2) = 3e-025
Identities = 24/48 (50%), Positives = 35/48 (72%)
Frame = +1 / +1
Query: 19 YPGGKPMSVHATLWDGSYWATQQGKVKVDWSAAPFAVSYRGYSADACV 162
+P +PM ++++LW+ WAT+ G VK DWS APF SYRG++ +ACV
Sbjct: 526 FPKNQPMRMYSSLWNAEEWATRGGLVKTDWSKAPFTASYRGFNEEACV 669
Score = 64.8 bits (135), Expect(2) = 3e-025
Identities = 23/50 (46%), Positives = 30/50 (60%)
Frame = +1 / +1
Query: 184 LSCPAGTDRWMSRQLDAAEWGTVAWARQNYMHYNYCDDGWRFPQGFPAEC 333
+S T W+S++LD+ + W + NYM YNYC D RFPQG P EC
Sbjct: 700 VSGQGSTGSWLSQELDSTGQEQMRWVQNNYMIYNYCTDAKRFPQGLPREC 849
>gb|CB252959.1|CB252959 13-E015332-019-005-J03-T7R MPIZ-ADIS-019 Arabidopsis thaliana cDNA
clone MPIZp768J035Q 5-PRIME, mRNA sequence
Length = 602
Score = 72.5 bits (152), Expect(2) = 3e-025
Identities = 24/48 (50%), Positives = 35/48 (72%)
Frame = +1 / +1
Query: 19 YPGGKPMSVHATLWDGSYWATQQGKVKVDWSAAPFAVSYRGYSADACV 162
+P +PM ++++LW+ WAT+ G VK DWS APF SYRG++ +ACV
Sbjct: 79 FPKNQPMRMYSSLWNAEEWATRGGLVKTDWSKAPFTASYRGFNEEACV 222
Score = 64.8 bits (135), Expect(2) = 3e-025
Identities = 23/50 (46%), Positives = 30/50 (60%)
Frame = +1 / +1
Query: 184 LSCPAGTDRWMSRQLDAAEWGTVAWARQNYMHYNYCDDGWRFPQGFPAEC 333
+S T W+S++LD+ + W + NYM YNYC D RFPQG P EC
Sbjct: 253 VSGQGSTGSWLSQELDSTGQEQMRWVQNNYMIYNYCTDAKRFPQGLPREC 402
>gb|AI996718.1|AI996718 701668066 A. thaliana, Columbia Col-0, root-1 Arabidopsis thaliana
cDNA clone 701668066, mRNA sequence
Length = 575
Score = 72.5 bits (152), Expect(2) = 3e-025
Identities = 24/48 (50%), Positives = 35/48 (72%)
Frame = +1 / -2
Query: 19 YPGGKPMSVHATLWDGSYWATQQGKVKVDWSAAPFAVSYRGYSADACV 162
+P +PM ++++LW+ WAT+ G VK DWS APF SYRG++ +ACV
Sbjct: 499 FPKNQPMRMYSSLWNAEEWATRGGLVKTDWSKAPFTASYRGFNEEACV 356
Score = 64.8 bits (135), Expect(2) = 3e-025
Identities = 23/50 (46%), Positives = 30/50 (60%)
Frame = +1 / -2
Query: 184 LSCPAGTDRWMSRQLDAAEWGTVAWARQNYMHYNYCDDGWRFPQGFPAEC 333
+S T W+S++LD+ + W + NYM YNYC D RFPQG P EC
Sbjct: 325 VSGQGSTGSWLSQELDSTGQEQMRWVQNNYMIYNYCTDAKRFPQGLPREC 176
>gb|CB253381.1|CB253381 03-E010699-019-002-F02-T7R MPIZ-ADIS-019 Arabidopsis thaliana cDNA
clone MPIZp768F022Q 5-PRIME, mRNA sequence
Length = 508
Score = 72.5 bits (152), Expect(2) = 3e-025
Identities = 24/48 (50%), Positives = 35/48 (72%)
Frame = +1 / +1
Query: 19 YPGGKPMSVHATLWDGSYWATQQGKVKVDWSAAPFAVSYRGYSADACV 162
+P +PM ++++LW+ WAT+ G VK DWS APF SYRG++ +ACV
Sbjct: 37 FPKNQPMRMYSSLWNAEEWATRGGLVKTDWSKAPFTASYRGFNEEACV 180
Score = 64.8 bits (135), Expect(2) = 3e-025
Identities = 23/50 (46%), Positives = 30/50 (60%)
Frame = +1 / +1
Query: 184 LSCPAGTDRWMSRQLDAAEWGTVAWARQNYMHYNYCDDGWRFPQGFPAEC 333
+S T W+S++LD+ + W + NYM YNYC D RFPQG P EC
Sbjct: 211 VSGQGSTGSWLSQELDSTGQEQMRWVQNNYMIYNYCTDAKRFPQGLPREC 360
>gb|CB255401.1|CB255401 42-E018427-019-008-C11-T7R MPIZ-ADIS-019 Arabidopsis thaliana cDNA
clone MPIZp768C118Q 5-PRIME, mRNA sequence
Length = 626
Score = 72.5 bits (152), Expect(2) = 4e-025
Identities = 24/48 (50%), Positives = 35/48 (72%)
Frame = +1 / +2
Query: 19 YPGGKPMSVHATLWDGSYWATQQGKVKVDWSAAPFAVSYRGYSADACV 162
+P +PM ++++LW+ WAT+ G VK DWS APF SYRG++ +ACV
Sbjct: 158 FPKNQPMRMYSSLWNAEEWATRGGLVKTDWSKAPFTASYRGFNEEACV 301
Score = 64.3 bits (134), Expect(2) = 4e-025
Identities = 23/50 (46%), Positives = 29/50 (58%)
Frame = +1 / +2
Query: 184 LSCPAGTDRWMSRQLDAAEWGTVAWARQNYMHYNYCDDGWRFPQGFPAEC 333
+S T W+S +LD+ + W + NYM YNYC D RFPQG P EC
Sbjct: 332 VSRQGSTGSWLSHELDSTGQEQMRWVQNNYMIYNYCTDAKRFPQGLPREC 481
>gb|AF093672.1|AF093672 Arabidopsis thaliana xyloglucan endotransglycosylase (XTR9) mRNA,
complete cds
Length = 1100
Score = 69.3 bits (145), Expect(2) = 1e-024
Identities = 22/45 (48%), Positives = 34/45 (75%)
Frame = +1 / +3
Query: 13 LAYPGGKPMSVHATLWDGSYWATQQGKVKVDWSAAPFAVSYRGYS 147
+AYP +PM ++++LW+ WAT+ G+VK+DWS APF SYR ++
Sbjct: 573 VAYPKNQPMRIYSSLWEADDWATEGGRVKIDWSNAPFKASYRNFN 707
Score = 65.7 bits (137), Expect(2) = 1e-024
Identities = 22/60 (36%), Positives = 36/60 (60%)
Frame = +1 / +3
Query: 154 ACVPDGDGRPLSCPAGTDRWMSRQLDAAEWGTVAWARQNYMHYNYCDDGWRFPQGFPAEC 333
+C + ++C ++ WM L+ A++G + W ++++M YNYC D RFPQG P EC
Sbjct: 717 SCSRTSSSKWVTCEPNSNSWMWTTLNPAQYGKMMWVQRDFMIYNYCTDFKRFPQGLPKEC 896
>ref|NM_118714.3| Arabidopsis thaliana XTR9 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 9);
hydrolase, acting on glycosyl bonds / hydrolase,
hydrolyzing O-glycosyl compounds AT4G25820 (XTR9) mRNA,
complete cds
Length = 1089
Score = 69.3 bits (145), Expect(2) = 1e-024
Identities = 22/45 (48%), Positives = 34/45 (75%)
Frame = +1 / +2
Query: 13 LAYPGGKPMSVHATLWDGSYWATQQGKVKVDWSAAPFAVSYRGYS 147
+AYP +PM ++++LW+ WAT+ G+VK+DWS APF SYR ++
Sbjct: 584 VAYPKNQPMRIYSSLWEADDWATEGGRVKIDWSNAPFKASYRNFN 718
Score = 65.7 bits (137), Expect(2) = 1e-024
Identities = 22/60 (36%), Positives = 36/60 (60%)
Frame = +1 / +2
Query: 154 ACVPDGDGRPLSCPAGTDRWMSRQLDAAEWGTVAWARQNYMHYNYCDDGWRFPQGFPAEC 333
+C + ++C ++ WM L+ A++G + W ++++M YNYC D RFPQG P EC
Sbjct: 728 SCSRTSSSKWVTCEPNSNSWMWTTLNPAQYGKMMWVQRDFMIYNYCTDFKRFPQGLPKEC 907
>gb|AY093183.1| Arabidopsis thaliana putative xyloglucan endo-1, 4-beta-D-glucanase
(At4g25820) mRNA, complete cds
Length = 1068
Score = 69.3 bits (145), Expect(2) = 1e-024
Identities = 22/45 (48%), Positives = 34/45 (75%)
Frame = +1 / +2
Query: 13 LAYPGGKPMSVHATLWDGSYWATQQGKVKVDWSAAPFAVSYRGYS 147
+AYP +PM ++++LW+ WAT+ G+VK+DWS APF SYR ++
Sbjct: 584 VAYPKNQPMRIYSSLWEADDWATEGGRVKIDWSNAPFKASYRNFN 718
Score = 65.7 bits (137), Expect(2) = 1e-024
Identities = 22/60 (36%), Positives = 36/60 (60%)
Frame = +1 / +2
Query: 154 ACVPDGDGRPLSCPAGTDRWMSRQLDAAEWGTVAWARQNYMHYNYCDDGWRFPQGFPAEC 333
+C + ++C ++ WM L+ A++G + W ++++M YNYC D RFPQG P EC
Sbjct: 728 SCSRTSSSKWVTCEPNSNSWMWTTLNPAQYGKMMWVQRDFMIYNYCTDFKRFPQGLPKEC 907
>gb|BT003385.1| Arabidopsis thaliana putative xyloglucan endo-1, 4-beta-D-glucanase
(At4g25820) mRNA, complete cds
Length = 901
Score = 69.3 bits (145), Expect(2) = 1e-024
Identities = 22/45 (48%), Positives = 34/45 (75%)
Frame = +1 / +1
Query: 13 LAYPGGKPMSVHATLWDGSYWATQQGKVKVDWSAAPFAVSYRGYS 147
+AYP +PM ++++LW+ WAT+ G+VK+DWS APF SYR ++
Sbjct: 532 VAYPKNQPMRIYSSLWEADDWATEGGRVKIDWSNAPFKASYRNFN 666
Score = 65.7 bits (137), Expect(2) = 1e-024
Identities = 22/60 (36%), Positives = 36/60 (60%)
Frame = +1 / +1
Query: 154 ACVPDGDGRPLSCPAGTDRWMSRQLDAAEWGTVAWARQNYMHYNYCDDGWRFPQGFPAEC 333
+C + ++C ++ WM L+ A++G + W ++++M YNYC D RFPQG P EC
Sbjct: 676 SCSRTSSSKWVTCEPNSNSWMWTTLNPAQYGKMMWVQRDFMIYNYCTDFKRFPQGLPKEC 855
>emb|AL091006.1|CNS00UHS Arabidopsis thaliana genome survey sequence T7 end of BAC T7A8 of
TAMU library from strain Columbia of Arabidopsis
thaliana, genomic survey sequence
Length = 660
Score = 69.3 bits (145), Expect(2) = 2e-024
Identities = 22/45 (48%), Positives = 34/45 (75%)
Frame = +1 / +2
Query: 13 LAYPGGKPMSVHATLWDGSYWATQQGKVKVDWSAAPFAVSYRGYS 147
+AYP +PM ++++LW+ WAT+ G+VK+DWS APF SYR ++
Sbjct: 53 VAYPKNQPMRIYSSLWEADDWATEGGRVKIDWSNAPFKASYRNFN 187
Score = 65.7 bits (137), Expect(2) = 2e-024
Identities = 22/60 (36%), Positives = 36/60 (60%)
Frame = +1 / +2
Query: 154 ACVPDGDGRPLSCPAGTDRWMSRQLDAAEWGTVAWARQNYMHYNYCDDGWRFPQGFPAEC 333
+C + ++C ++ WM L+ A++G + W ++++M YNYC D RFPQG P EC
Sbjct: 197 SCSRTSSSKWVTCEPNSNSWMWTTLNPAQYGKMMWVQRDFMIYNYCTDFKRFPQGLPKEC 376
>emb|BX833748.1|CNS0A0FK Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTSIL74ZH09 of Silique of strain col-0 of Arabidopsis
thaliana (thale cress)
Length = 1025
Score = 68.0 bits (142), Expect(2) = 3e-024
Identities = 25/53 (47%), Positives = 34/53 (64%)
Frame = +1 / +3
Query: 13 LAYPGGKPMSVHATLWDGSYWATQQGKVKVDWSAAPFAVSYRGYSADACVPDG 171
+ YP +PM ++++LW+ AT+ G VK DWS APF SYR + ADAC G
Sbjct: 546 IQYPKLQPMRLYSSLWNADQLATRGGLVKTDWSKAPFTASYRNFRADACFSSG 704
Score = 66.1 bits (138), Expect(2) = 3e-024
Identities = 25/48 (52%), Positives = 31/48 (64%)
Frame = +1 / +3
Query: 187 SCPAGTDRWMSRQLDAAEWGTVAWARQNYMHYNYCDDGWRFPQGFPAE 330
SCPAG+ RW S++LD + ++ YM YNYC D RFPQGFP E
Sbjct: 714 SCPAGSPRWFSQRLDLTAEDKMRVVQRKYMIYNYCTDTKRFPQGFPKE 857
>gb|AV544169.1|AV544169 AV544169 Arabidopsis thaliana roots Columbia Arabidopsis thaliana
cDNA clone RZ35b10F 3', mRNA sequence
Length = 624
Score = 72.5 bits (152), Expect(2) = 5e-024
Identities = 24/48 (50%), Positives = 35/48 (72%)
Frame = +1 / -1
Query: 19 YPGGKPMSVHATLWDGSYWATQQGKVKVDWSAAPFAVSYRGYSADACV 162
+P +PM ++++LW+ WAT+ G VK DWS APF SYRG++ +ACV
Sbjct: 363 FPKNQPMRMYSSLWNAEEWATRGGLVKTDWSKAPFTASYRGFNEEACV 220
Score = 60.6 bits (126), Expect(2) = 5e-024
Identities = 22/49 (44%), Positives = 29/49 (59%)
Frame = +1 / -1
Query: 184 LSCPAGTDRWMSRQLDAAEWGTVAWARQNYMHYNYCDDGWRFPQGFPAE 330
+S T W+S++LD+ + W + NYM YNYC D RFPQG P E
Sbjct: 189 VSGQGSTGSWLSQELDSTGQEQMRWVQNNYMIYNYCTDAKRFPQGLPRE 43
>gb|AV542095.1|AV542095 AV542095 Arabidopsis thaliana roots Columbia Arabidopsis thaliana
cDNA clone RZ178b02F 3', mRNA sequence
Length = 469
Score = 65.7 bits (137), Expect(2) = 3e-023
Identities = 22/60 (36%), Positives = 36/60 (60%)
Frame = +1 / -3
Query: 154 ACVPDGDGRPLSCPAGTDRWMSRQLDAAEWGTVAWARQNYMHYNYCDDGWRFPQGFPAEC 333
+C + ++C ++ WM L+ A++G + W ++++M YNYC D RFPQG P EC
Sbjct: 212 SCSRTSSSKWVTCEPNSNSWMWTTLNPAQYGKMMWVQRDFMIYNYCTDFKRFPQGLPKEC 33
Score = 65.2 bits (136), Expect(2) = 3e-023
Identities = 21/45 (46%), Positives = 33/45 (73%)
Frame = +1 / -3
Query: 13 LAYPGGKPMSVHATLWDGSYWATQQGKVKVDWSAAPFAVSYRGYS 147
+AYP +PM ++++LW+ WAT+ G+VK+ WS APF SYR ++
Sbjct: 356 VAYPKNQPMRIYSSLWEADDWATEGGRVKIVWSNAPFKASYRNFN 222
>dbj|AB017064.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MDN11
Length = 83373
Score = 71.2 bits (149), Expect(2) = 6e-023
Identities = 24/48 (50%), Positives = 33/48 (68%)
Frame = +1 / +2
Query: 19 YPGGKPMSVHATLWDGSYWATQQGKVKVDWSAAPFAVSYRGYSADACV 162
+P +PM ++A+LW+ +WAT+ G K DWS APF YR Y+ DACV
Sbjct: 57908 FPKHQPMRLYASLWEAEHWATRGGLEKTDWSKAPFTAFYRNYNVDACV 58051
Score = 58.3 bits (121), Expect(2) = 6e-023
Identities = 22/42 (52%), Positives = 26/42 (61%)
Frame = +1 / +2
Query: 211 WMSRQLDAAEWGTVAWARQNYMHYNYCDDGWRFPQGFPAECS 336
W ++ LD V WA++ YM YNYC D RFPQG P ECS
Sbjct: 58091 WFTQVLDFKGKNRVKWAQRKYMVYNYCTDKKRFPQGAPPECS 58216
>dbj|AK221454.1| Arabidopsis thaliana mRNA for xyloglucan endo-1,4-beta-D-glucanase,
complete cds, clone: RAFL07-25-D22
Length = 1132
Score = 71.2 bits (149), Expect(2) = 6e-023
Identities = 24/48 (50%), Positives = 33/48 (68%)
Frame = +1 / +2
Query: 19 YPGGKPMSVHATLWDGSYWATQQGKVKVDWSAAPFAVSYRGYSADACV 162
+P +PM ++A+LW+ +WAT+ G K DWS APF YR Y+ DACV
Sbjct: 590 FPKHQPMRLYASLWEAEHWATRGGLEKTDWSKAPFTAFYRNYNVDACV 733
Score = 58.3 bits (121), Expect(2) = 6e-023
Identities = 22/42 (52%), Positives = 26/42 (61%)
Frame = +1 / +2
Query: 211 WMSRQLDAAEWGTVAWARQNYMHYNYCDDGWRFPQGFPAECS 336
W ++ LD V WA++ YM YNYC D RFPQG P ECS
Sbjct: 773 WFTQVLDFKGKNRVKWAQRKYMVYNYCTDKKRFPQGAPPECS 898
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 1,133,046,221
Number of Sequences: 1013581
Number of extensions: 14913140
Number of successful extensions: 155081
Number of sequences better than 1.0e-020: 99
length of database: 302,980,290
effective HSP length: 56
effective length of database: 246,219,754
effective search space used: 44319555720
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)