TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2448655.2.1
(682 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AY125499.1| Arabidopsis thaliana AT4g12110/F16J13_180 mR... 283 4e-075
gb|BT000546.1| Arabidopsis thaliana putative C-4 sterol met... 283 4e-075
gb|AY087412.1| Arabidopsis thaliana clone 35110 mRNA, compl... 283 4e-075
emb|BX828013.1|CNS0A3D8 Arabidopsis thaliana Full-length cD... 283 4e-075
gb|AF039199.1| Arabidopsis thaliana sterol-4-methyl-oxidase... 283 4e-075
ref|NM_117281.1| Arabidopsis thaliana SMO1-1 (STEROL-4ALPHA... 283 4e-075
emb|BX841551.1|CNS09YFV Arabidopsis thaliana Full-length cD... 282 8e-075
gb|AY087876.1| Arabidopsis thaliana clone 39135 mRNA, compl... 278 1e-073
gb|AY035393.1| Arabidopsis thaliana putative sterol 4-alpha... 278 1e-073
ref|NM_118404.2| Arabidopsis thaliana SMO1-2 (STEROL C4-MET... 278 1e-073
emb|BX827501.1|CNS0A2TZ Arabidopsis thaliana Full-length cD... 272 9e-072
ref|NM_118403.1| Arabidopsis thaliana SMO1-3 (STEROL 4-ALPH... 261 1e-068
gb|AY323213.1| Arabidopsis thaliana sterol-4-alpha methyl o... 233 5e-063
emb|AL049638.1|ATF16J13 Arabidopsis thaliana DNA chromosome... 138 7e-062
emb|AL161533.2|ATCHRIV33 Arabidopsis thaliana DNA chromosom... 138 1e-061
emb|AL021635.1|ATT12H17 Arabidopsis thaliana DNA chromosome... 139 5e-060
emb|AJ270060.1| Arabidopsis thaliana DNA chromosome 4, long... 139 9e-060
emb|AL161557.2|ATCHRIV57 Arabidopsis thaliana DNA chromosom... 139 1e-059
ref|NC_003075.3| Arabidopsis thaliana chromosome 4, complet... 139 1e-059
gb|AV538026.1|AV538026 AV538026 Arabidopsis thaliana roots ... 166 9e-040
gb|AF222719.1|AF222719 Arabidopsis thaliana sterol 4-alpha-... 166 9e-040
gb|BT002780.1| Arabidopsis thaliana clone RAFL14-89-L18 (R2... 166 9e-040
gb|BT005125.1| Arabidopsis thaliana clone U20198 putative C... 166 9e-040
emb|BX819624.1|CNS0A9T3 Arabidopsis thaliana Full-length cD... 166 9e-040
emb|CQ769015.1| Sequence 19 from Patent WO2004007730 166 9e-040
gb|AF327853.1| Arabidopsis thaliana sterol 4-alpha-methyl-o... 166 9e-040
ref|NM_179802.1| Arabidopsis thaliana SMO2-1; C-4 methylste... 166 9e-040
ref|NM_201830.1| Arabidopsis thaliana SMO2-1; C-4 methylste... 166 9e-040
gb|BT002793.1| Arabidopsis thaliana clone RAFL14-96-B14 (R2... 163 6e-039
gb|AY087267.1| Arabidopsis thaliana clone 33426 mRNA, compl... 163 6e-039
emb|BX815281.1|CNS0ABC4 Arabidopsis thaliana Full-length cD... 163 6e-039
emb|BX817847.1|CNS0AB3I Arabidopsis thaliana Full-length cD... 163 6e-039
gb|BT015609.1| Arabidopsis thaliana At1g07420 mRNA sequence 163 6e-039
gb|AF346734.1| Arabidopsis thaliana sterol 4-alpha-methyl-o... 163 6e-039
ref|NM_100616.2| Arabidopsis thaliana SMO2-2; C-4 methylste... 163 6e-039
ref|NM_202048.1| Arabidopsis thaliana SMO2-2; C-4 methylste... 163 6e-039
gb|H37509.1|H37509 15638 Lambda-PRL2 Arabidopsis thaliana c... 159 1e-037
gb|BX840571.1|BX840571 BX840571 Arabidopsis thaliana Siliqu... 157 3e-037
ref|NM_128493.2| Arabidopsis thaliana SMO2-1; C-4 methylste... 113 6e-035
gb|AY086287.1| Arabidopsis thaliana clone 23439 mRNA, compl... 113 6e-035
gb|AV557159.1|AV557159 AV557159 Arabidopsis thaliana green ... 147 4e-034
emb|BX841564.1|CNS09YF9 Arabidopsis thaliana Full-length cD... 147 4e-034
gb|BU635113.1|BU635113 016A04 Infected Arabidopsis Leaf Ara... 145 1e-033
emb|BX817293.1|CNS0AB3H Arabidopsis thaliana Full-length cD... 144 3e-033
gb|CW846749.1|CW846749 GT13595.Ds3.03.05.2004.jx57.763 Arab... 139 9e-032
emb|AJ837421.1| Arabidopsis thaliana T-DNA flanking sequenc... 138 1e-031
gb|AV558731.1|AV558731 AV558731 Arabidopsis thaliana green ... 136 8e-031
gb|AV558038.1|AV558038 AV558038 Arabidopsis thaliana green ... 130 4e-029
gb|AE005172.1| Arabidopsis thaliana chromosome 1, top arm c... 101 1e-027
gb|AC022464.4|AC022464 Genomic sequence for Arabidopsis tha... 101 1e-027
gb|AC004561.3| Arabidopsis thaliana chromosome 2 clone F16P... 102 3e-027
gb|BP610683.1|BP610683 BP610683 RAFL16 Arabidopsis thaliana... 121 3e-026
gb|BP595589.1|BP595589 BP595589 RAFL15 Arabidopsis thaliana... 119 8e-026
gb|BP582076.1|BP582076 BP582076 RAFL14 Arabidopsis thaliana... 110 6e-023
>gb|AY125499.1| Arabidopsis thaliana AT4g12110/F16J13_180 mRNA, complete cds
Length = 1315
Score = 283 bits (612), Expect = 4e-075
Identities = 104/133 (78%), Positives = 118/133 (88%)
Frame = +2 / +3
Query: 2 VHHEFTAPIGFAAPYAHWAEVLILGIPSFVGPAIVPGHMITFWLWIILRQVEAIETHSGF 181
VHHE+TAPIG+AAPYAHWAEVL+LGIP+F+GPAI PGHMITFWLWI LRQ+EAIETHSG+
Sbjct: 630 VHHEYTAPIGYAAPYAHWAEVLLLGIPTFMGPAIAPGHMITFWLWIALRQMEAIETHSGY 809
Query: 182 DFPFTPTKYIPFYGGAEYHDYHHYVGGQSQSNFASVFTYCDYLYGTDKGYRFHKTYLAKL 361
DFP++PTKYIPFYGGAEYHDYHHYVGGQSQSNFASVFTYCDY+YGTDKGYRF K L ++
Sbjct: 810 DFPWSPTKYIPFYGGAEYHDYHHYVGGQSQSNFASVFTYCDYIYGTDKGYRFQKKLLEQI 989
Query: 362 KDLGHNDGEKGDG 400
K+ + G
Sbjct: 990 KESSKKSNKHNGG 1028
Score = 156 bits (335), Expect = 7e-037
Identities = 79/118 (66%), Positives = 87/118 (73%)
Frame = -2 / -1
Query: 354 ARYVLWNL*PLSVPYK*SQ*VKTEAKLLWLWPPT****SWYSAPP*NGIYFVGVNGKSKP 175
+R WNL*PLSVP *SQ V TEAKLL L PPT****SWYSAPP* G+YFVG++GKS P
Sbjct: 982 SRSFFWNL*PLSVP*M*SQYVNTEAKLL*LCPPT****SWYSAPP*KGMYFVGLHGKSYP 803
Query: 174 LCVSIAST*RSIIQSQNVIMWPGTMAGPTKEGMPSISTSAQCAYGAANPIGAVNSW*T 1
L VSIAS I +Q VI+ PG +AGP G+P TSAQCA GAA PIGAV S *T
Sbjct: 802 L*VSIASICLKAIHNQKVII*PGAIAGPINVGIPRSKTSAQCA*GAAYPIGAVYS**T 629
Score = 114 bits (244), Expect = 3e-024
Identities = 54/143 (37%), Positives = 89/143 (62%)
Frame = -1 / -3
Query: 430 LIQFHIAGSAAVSFLAIIMPQILQLC*VCFVESVTFVSAI*VITVSENRSKIALALASYI 251
L++F + G + L ++ ++L L +ESVT VS+I VITV E+ S++AL L+S +
Sbjct: 1058 LLRFLLIGFYSSVMLVALLRRLLDLLKKLLLESVTLVSSINVITVREH*SEVALTLSSNV 879
Query: 250 MMIVMVFCSSIEWNILCRGEWEIKAAMCLDSLHLTEYNPEPECDHVAWNNGWPDEGGDAE 71
+MIVMV +++E ++ C W+I + + L+S HL NP+P+ H+ +N W + D+E
Sbjct: 878 VMIVMVLSTTVERDVFCWTPWKIISTVSLNSFHLP*SNPQPKGYHMTRSNSWSHKRRDSE 699
Query: 70 YQHLSPVCIWSCESYWRSELMVN 2
Q+ SP+CI S SY L++N
Sbjct: 698 KQNFSPMCIRSSISYRSCVLVMN 630
>gb|BT000546.1| Arabidopsis thaliana putative C-4 sterol methyl oxidase
(At4g12110/F16J13_180) mRNA, complete cds
Length = 897
Score = 283 bits (612), Expect = 4e-075
Identities = 104/133 (78%), Positives = 118/133 (88%)
Frame = +2 / +1
Query: 2 VHHEFTAPIGFAAPYAHWAEVLILGIPSFVGPAIVPGHMITFWLWIILRQVEAIETHSGF 181
VHHE+TAPIG+AAPYAHWAEVL+LGIP+F+GPAI PGHMITFWLWI LRQ+EAIETHSG+
Sbjct: 484 VHHEYTAPIGYAAPYAHWAEVLLLGIPTFMGPAIAPGHMITFWLWIALRQMEAIETHSGY 663
Query: 182 DFPFTPTKYIPFYGGAEYHDYHHYVGGQSQSNFASVFTYCDYLYGTDKGYRFHKTYLAKL 361
DFP++PTKYIPFYGGAEYHDYHHYVGGQSQSNFASVFTYCDY+YGTDKGYRF K L ++
Sbjct: 664 DFPWSPTKYIPFYGGAEYHDYHHYVGGQSQSNFASVFTYCDYIYGTDKGYRFQKKLLEQI 843
Query: 362 KDLGHNDGEKGDG 400
K+ + G
Sbjct: 844 KESSKKSNKHNGG 882
Score = 156 bits (335), Expect = 7e-037
Identities = 79/118 (66%), Positives = 87/118 (73%)
Frame = -2 / -2
Query: 354 ARYVLWNL*PLSVPYK*SQ*VKTEAKLLWLWPPT****SWYSAPP*NGIYFVGVNGKSKP 175
+R WNL*PLSVP *SQ V TEAKLL L PPT****SWYSAPP* G+YFVG++GKS P
Sbjct: 836 SRSFFWNL*PLSVP*M*SQYVNTEAKLL*LCPPT****SWYSAPP*KGMYFVGLHGKSYP 657
Query: 174 LCVSIAST*RSIIQSQNVIMWPGTMAGPTKEGMPSISTSAQCAYGAANPIGAVNSW*T 1
L VSIAS I +Q VI+ PG +AGP G+P TSAQCA GAA PIGAV S *T
Sbjct: 656 L*VSIASICLKAIHNQKVII*PGAIAGPINVGIPRSKTSAQCA*GAAYPIGAVYS**T 483
Score = 109 bits (233), Expect = 8e-023
Identities = 51/129 (39%), Positives = 82/129 (63%)
Frame = -1 / -1
Query: 388 LAIIMPQILQLC*VCFVESVTFVSAI*VITVSENRSKIALALASYIMMIVMVFCSSIEWN 209
L ++ ++L L +ESVT VS+I VITV E+ S++AL L+S ++MIVMV +++E +
Sbjct: 870 LVALLRRLLDLFKKLLLESVTLVSSINVITVREH*SEVALTLSSNVVMIVMVLSTTVERD 691
Query: 208 ILCRGEWEIKAAMCLDSLHLTEYNPEPECDHVAWNNGWPDEGGDAEYQHLSPVCIWSCES 29
+ C W+I + + L+S HL NP+P+ H+ +N W + D+E Q+ SP+CI S S
Sbjct: 690 VFCWTPWKIISTVSLNSFHLP*SNPQPKGYHMTRSNSWSHKRRDSEKQNFSPMCIRSSIS 511
Query: 28 YWRSELMVN 2
Y L++N
Sbjct: 510 YRSCVLVMN 484
>gb|AY087412.1| Arabidopsis thaliana clone 35110 mRNA, complete sequence
Length = 1441
Score = 283 bits (612), Expect = 4e-075
Identities = 104/133 (78%), Positives = 118/133 (88%)
Frame = +2 / +1
Query: 2 VHHEFTAPIGFAAPYAHWAEVLILGIPSFVGPAIVPGHMITFWLWIILRQVEAIETHSGF 181
VHHE+TAPIG+AAPYAHWAEVL+LGIP+F+GPAI PGHMITFWLWI LRQ+EAIETHSG+
Sbjct: 631 VHHEYTAPIGYAAPYAHWAEVLLLGIPTFMGPAIAPGHMITFWLWIALRQMEAIETHSGY 810
Query: 182 DFPFTPTKYIPFYGGAEYHDYHHYVGGQSQSNFASVFTYCDYLYGTDKGYRFHKTYLAKL 361
DFP++PTKYIPFYGGAEYHDYHHYVGGQSQSNFASVFTYCDY+YGTDKGYRF K L ++
Sbjct: 811 DFPWSPTKYIPFYGGAEYHDYHHYVGGQSQSNFASVFTYCDYIYGTDKGYRFQKKLLEQI 990
Query: 362 KDLGHNDGEKGDG 400
K+ + G
Sbjct: 991 KESSKKSNKHNGG 1029
Score = 156 bits (335), Expect = 7e-037
Identities = 79/118 (66%), Positives = 87/118 (73%)
Frame = -2 / -3
Query: 354 ARYVLWNL*PLSVPYK*SQ*VKTEAKLLWLWPPT****SWYSAPP*NGIYFVGVNGKSKP 175
+R WNL*PLSVP *SQ V TEAKLL L PPT****SWYSAPP* G+YFVG++GKS P
Sbjct: 983 SRSFFWNL*PLSVP*M*SQYVNTEAKLL*LCPPT****SWYSAPP*KGMYFVGLHGKSYP 804
Query: 174 LCVSIAST*RSIIQSQNVIMWPGTMAGPTKEGMPSISTSAQCAYGAANPIGAVNSW*T 1
L VSIAS I +Q VI+ PG +AGP G+P TSAQCA GAA PIGAV S *T
Sbjct: 803 L*VSIASICLKAIHNQKVII*PGAIAGPINVGIPRSKTSAQCA*GAAYPIGAVYS**T 630
Score = 114 bits (244), Expect = 3e-024
Identities = 54/143 (37%), Positives = 89/143 (62%)
Frame = -1 / -2
Query: 430 LIQFHIAGSAAVSFLAIIMPQILQLC*VCFVESVTFVSAI*VITVSENRSKIALALASYI 251
L++F + G + L ++ ++L L +ESVT VS+I VITV E+ S++AL L+S +
Sbjct: 1059 LLRFLLIGFYSSVMLVALLRRLLDLLKKLLLESVTLVSSINVITVREH*SEVALTLSSNV 880
Query: 250 MMIVMVFCSSIEWNILCRGEWEIKAAMCLDSLHLTEYNPEPECDHVAWNNGWPDEGGDAE 71
+MIVMV +++E ++ C W+I + + L+S HL NP+P+ H+ +N W + D+E
Sbjct: 879 VMIVMVLSTTVERDVFCWTPWKIISTVSLNSFHLP*SNPQPKGYHMTRSNSWSHKRRDSE 700
Query: 70 YQHLSPVCIWSCESYWRSELMVN 2
Q+ SP+CI S SY L++N
Sbjct: 699 KQNFSPMCIRSSISYRSCVLVMN 631
>emb|BX828013.1|CNS0A3D8 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTPGH45ZA11 of Hormone Treated Callus of strain col-0
of Arabidopsis thaliana (thale cress)
Length = 1317
Score = 283 bits (612), Expect = 4e-075
Identities = 104/133 (78%), Positives = 118/133 (88%)
Frame = +2 / +3
Query: 2 VHHEFTAPIGFAAPYAHWAEVLILGIPSFVGPAIVPGHMITFWLWIILRQVEAIETHSGF 181
VHHE+TAPIG+AAPYAHWAEVL+LGIP+F+GPAI PGHMITFWLWI LRQ+EAIETHSG+
Sbjct: 603 VHHEYTAPIGYAAPYAHWAEVLLLGIPTFMGPAIAPGHMITFWLWIALRQMEAIETHSGY 782
Query: 182 DFPFTPTKYIPFYGGAEYHDYHHYVGGQSQSNFASVFTYCDYLYGTDKGYRFHKTYLAKL 361
DFP++PTKYIPFYGGAEYHDYHHYVGGQSQSNFASVFTYCDY+YGTDKGYRF K L ++
Sbjct: 783 DFPWSPTKYIPFYGGAEYHDYHHYVGGQSQSNFASVFTYCDYIYGTDKGYRFQKKLLEQI 962
Query: 362 KDLGHNDGEKGDG 400
K+ + G
Sbjct: 963 KESSKKSNKHNGG 1001
Score = 156 bits (335), Expect = 7e-037
Identities = 79/118 (66%), Positives = 87/118 (73%)
Frame = -2 / -3
Query: 354 ARYVLWNL*PLSVPYK*SQ*VKTEAKLLWLWPPT****SWYSAPP*NGIYFVGVNGKSKP 175
+R WNL*PLSVP *SQ V TEAKLL L PPT****SWYSAPP* G+YFVG++GKS P
Sbjct: 955 SRSFFWNL*PLSVP*M*SQYVNTEAKLL*LCPPT****SWYSAPP*KGMYFVGLHGKSYP 776
Query: 174 LCVSIAST*RSIIQSQNVIMWPGTMAGPTKEGMPSISTSAQCAYGAANPIGAVNSW*T 1
L VSIAS I +Q VI+ PG +AGP G+P TSAQCA GAA PIGAV S *T
Sbjct: 775 L*VSIASICLKAIHNQKVII*PGAIAGPINVGIPRSKTSAQCA*GAAYPIGAVYS**T 602
Score = 114 bits (244), Expect = 3e-024
Identities = 54/143 (37%), Positives = 89/143 (62%)
Frame = -1 / -2
Query: 430 LIQFHIAGSAAVSFLAIIMPQILQLC*VCFVESVTFVSAI*VITVSENRSKIALALASYI 251
L++F + G + L ++ ++L L +ESVT VS+I VITV E+ S++AL L+S +
Sbjct: 1031 LLRFLLIGFYSSVMLVALLRRLLDLLKKLLLESVTLVSSINVITVREH*SEVALTLSSNV 852
Query: 250 MMIVMVFCSSIEWNILCRGEWEIKAAMCLDSLHLTEYNPEPECDHVAWNNGWPDEGGDAE 71
+MIVMV +++E ++ C W+I + + L+S HL NP+P+ H+ +N W + D+E
Sbjct: 851 VMIVMVLSTTVERDVFCWTPWKIISTVSLNSFHLP*SNPQPKGYHMTRSNSWSHKRRDSE 672
Query: 70 YQHLSPVCIWSCESYWRSELMVN 2
Q+ SP+CI S SY L++N
Sbjct: 671 KQNFSPMCIRSSISYRSCVLVMN 603
>gb|AF039199.1| Arabidopsis thaliana sterol-4-methyl-oxidase mRNA, complete cds
Length = 1469
Score = 283 bits (612), Expect = 4e-075
Identities = 104/133 (78%), Positives = 118/133 (88%)
Frame = +2 / +3
Query: 2 VHHEFTAPIGFAAPYAHWAEVLILGIPSFVGPAIVPGHMITFWLWIILRQVEAIETHSGF 181
VHHE+TAPIG+AAPYAHWAEVL+LGIP+F+GPAI PGHMITFWLWI LRQ+EAIETHSG+
Sbjct: 597 VHHEYTAPIGYAAPYAHWAEVLLLGIPTFMGPAIAPGHMITFWLWIALRQMEAIETHSGY 776
Query: 182 DFPFTPTKYIPFYGGAEYHDYHHYVGGQSQSNFASVFTYCDYLYGTDKGYRFHKTYLAKL 361
DFP++PTKYIPFYGGAEYHDYHHYVGGQSQSNFASVFTYCDY+YGTDKGYRF K L ++
Sbjct: 777 DFPWSPTKYIPFYGGAEYHDYHHYVGGQSQSNFASVFTYCDYIYGTDKGYRFQKKLLEQI 956
Query: 362 KDLGHNDGEKGDG 400
K+ + G
Sbjct: 957 KESSKKSNKHNGG 995
Score = 156 bits (335), Expect = 7e-037
Identities = 79/118 (66%), Positives = 87/118 (73%)
Frame = -2 / -2
Query: 354 ARYVLWNL*PLSVPYK*SQ*VKTEAKLLWLWPPT****SWYSAPP*NGIYFVGVNGKSKP 175
+R WNL*PLSVP *SQ V TEAKLL L PPT****SWYSAPP* G+YFVG++GKS P
Sbjct: 949 SRSFFWNL*PLSVP*M*SQYVNTEAKLL*LCPPT****SWYSAPP*KGMYFVGLHGKSYP 770
Query: 174 LCVSIAST*RSIIQSQNVIMWPGTMAGPTKEGMPSISTSAQCAYGAANPIGAVNSW*T 1
L VSIAS I +Q VI+ PG +AGP G+P TSAQCA GAA PIGAV S *T
Sbjct: 769 L*VSIASICLKAIHNQKVII*PGAIAGPINVGIPRSKTSAQCA*GAAYPIGAVYS**T 596
Score = 114 bits (244), Expect = 3e-024
Identities = 54/143 (37%), Positives = 89/143 (62%)
Frame = -1 / -1
Query: 430 LIQFHIAGSAAVSFLAIIMPQILQLC*VCFVESVTFVSAI*VITVSENRSKIALALASYI 251
L++F + G + L ++ ++L L +ESVT VS+I VITV E+ S++AL L+S +
Sbjct: 1025 LLRFLLIGFYSSVMLVALLRRLLDLLKKLLLESVTLVSSINVITVREH*SEVALTLSSNV 846
Query: 250 MMIVMVFCSSIEWNILCRGEWEIKAAMCLDSLHLTEYNPEPECDHVAWNNGWPDEGGDAE 71
+MIVMV +++E ++ C W+I + + L+S HL NP+P+ H+ +N W + D+E
Sbjct: 845 VMIVMVLSTTVERDVFCWTPWKIISTVSLNSFHLP*SNPQPKGYHMTRSNSWSHKRRDSE 666
Query: 70 YQHLSPVCIWSCESYWRSELMVN 2
Q+ SP+CI S SY L++N
Sbjct: 665 KQNFSPMCIRSSISYRSCVLVMN 597
>ref|NM_117281.1| Arabidopsis thaliana SMO1-1 (STEROL-4ALPHA-METHYL OXIDASE 1-1);
catalytic AT4G12110 (SMO1-1) mRNA, complete cds
Length = 1441
Score = 283 bits (612), Expect = 4e-075
Identities = 104/133 (78%), Positives = 118/133 (88%)
Frame = +2 / +2
Query: 2 VHHEFTAPIGFAAPYAHWAEVLILGIPSFVGPAIVPGHMITFWLWIILRQVEAIETHSGF 181
VHHE+TAPIG+AAPYAHWAEVL+LGIP+F+GPAI PGHMITFWLWI LRQ+EAIETHSG+
Sbjct: 632 VHHEYTAPIGYAAPYAHWAEVLLLGIPTFMGPAIAPGHMITFWLWIALRQMEAIETHSGY 811
Query: 182 DFPFTPTKYIPFYGGAEYHDYHHYVGGQSQSNFASVFTYCDYLYGTDKGYRFHKTYLAKL 361
DFP++PTKYIPFYGGAEYHDYHHYVGGQSQSNFASVFTYCDY+YGTDKGYRF K L ++
Sbjct: 812 DFPWSPTKYIPFYGGAEYHDYHHYVGGQSQSNFASVFTYCDYIYGTDKGYRFQKKLLEQI 991
Query: 362 KDLGHNDGEKGDG 400
K+ + G
Sbjct: 992 KESSKKSNKHNGG 1030
Score = 156 bits (335), Expect = 7e-037
Identities = 79/118 (66%), Positives = 87/118 (73%)
Frame = -2 / -2
Query: 354 ARYVLWNL*PLSVPYK*SQ*VKTEAKLLWLWPPT****SWYSAPP*NGIYFVGVNGKSKP 175
+R WNL*PLSVP *SQ V TEAKLL L PPT****SWYSAPP* G+YFVG++GKS P
Sbjct: 984 SRSFFWNL*PLSVP*M*SQYVNTEAKLL*LCPPT****SWYSAPP*KGMYFVGLHGKSYP 805
Query: 174 LCVSIAST*RSIIQSQNVIMWPGTMAGPTKEGMPSISTSAQCAYGAANPIGAVNSW*T 1
L VSIAS I +Q VI+ PG +AGP G+P TSAQCA GAA PIGAV S *T
Sbjct: 804 L*VSIASICLKAIHNQKVII*PGAIAGPINVGIPRSKTSAQCA*GAAYPIGAVYS**T 631
Score = 114 bits (244), Expect = 3e-024
Identities = 54/143 (37%), Positives = 89/143 (62%)
Frame = -1 / -1
Query: 430 LIQFHIAGSAAVSFLAIIMPQILQLC*VCFVESVTFVSAI*VITVSENRSKIALALASYI 251
L++F + G + L ++ ++L L +ESVT VS+I VITV E+ S++AL L+S +
Sbjct: 1060 LLRFLLIGFYSSVMLVALLRRLLDLLKKLLLESVTLVSSINVITVREH*SEVALTLSSNV 881
Query: 250 MMIVMVFCSSIEWNILCRGEWEIKAAMCLDSLHLTEYNPEPECDHVAWNNGWPDEGGDAE 71
+MIVMV +++E ++ C W+I + + L+S HL NP+P+ H+ +N W + D+E
Sbjct: 880 VMIVMVLSTTVERDVFCWTPWKIISTVSLNSFHLP*SNPQPKGYHMTRSNSWSHKRRDSE 701
Query: 70 YQHLSPVCIWSCESYWRSELMVN 2
Q+ SP+CI S SY L++N
Sbjct: 700 KQNFSPMCIRSSISYRSCVLVMN 632
>emb|BX841551.1|CNS09YFV Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTLS95ZE04 of Adult vegetative tissue of strain col-0
of Arabidopsis thaliana (thale cress)
Length = 1013
Score = 282 bits (610), Expect = 8e-075
Identities = 103/122 (84%), Positives = 116/122 (95%)
Frame = +2 / +2
Query: 2 VHHEFTAPIGFAAPYAHWAEVLILGIPSFVGPAIVPGHMITFWLWIILRQVEAIETHSGF 181
VHHE+TAPIG+AAPYAHWAEVL+LGIP+F+GPAI PGHMITFWLWI LRQ+EAIETHSG+
Sbjct: 551 VHHEYTAPIGYAAPYAHWAEVLLLGIPTFMGPAIAPGHMITFWLWIALRQMEAIETHSGY 730
Query: 182 DFPFTPTKYIPFYGGAEYHDYHHYVGGQSQSNFASVFTYCDYLYGTDKGYRFHKTYLAKL 361
DFP++PTKYIPFYGGAEYHDYHHYVGGQSQSNFASVFTYCDY+YGTDKGYRF K L ++
Sbjct: 731 DFPWSPTKYIPFYGGAEYHDYHHYVGGQSQSNFASVFTYCDYIYGTDKGYRFQKKLLEQI 910
Query: 362 KD 367
K+
Sbjct: 911 KE 916
Score = 156 bits (335), Expect = 7e-037
Identities = 79/118 (66%), Positives = 87/118 (73%)
Frame = -2 / -3
Query: 354 ARYVLWNL*PLSVPYK*SQ*VKTEAKLLWLWPPT****SWYSAPP*NGIYFVGVNGKSKP 175
+R WNL*PLSVP *SQ V TEAKLL L PPT****SWYSAPP* G+YFVG++GKS P
Sbjct: 903 SRSFFWNL*PLSVP*M*SQYVNTEAKLL*LCPPT****SWYSAPP*KGMYFVGLHGKSYP 724
Query: 174 LCVSIAST*RSIIQSQNVIMWPGTMAGPTKEGMPSISTSAQCAYGAANPIGAVNSW*T 1
L VSIAS I +Q VI+ PG +AGP G+P TSAQCA GAA PIGAV S *T
Sbjct: 723 L*VSIASICLKAIHNQKVII*PGAIAGPINVGIPRSKTSAQCA*GAAYPIGAVYS**T 550
Score = 109 bits (232), Expect = 1e-022
Identities = 50/130 (38%), Positives = 82/130 (63%)
Frame = -1 / -2
Query: 391 FLAIIMPQILQLC*VCFVESVTFVSAI*VITVSENRSKIALALASYIMMIVMVFCSSIEW 212
+ ++ ++L L +ESVT VS+I VITV E+ S++AL L+S ++MIVMV +++E
Sbjct: 940 YAVALLRRLLDLLKKLLLESVTLVSSINVITVREH*SEVALTLSSNVVMIVMVLSTTVER 761
Query: 211 NILCRGEWEIKAAMCLDSLHLTEYNPEPECDHVAWNNGWPDEGGDAEYQHLSPVCIWSCE 32
++ C W+I + + L+S HL NP+P+ H+ +N W + D+E Q+ SP+CI S
Sbjct: 760 DVFCWTPWKIISTVSLNSFHLP*SNPQPKGYHMTRSNSWSHKRRDSEKQNFSPMCIRSSI 581
Query: 31 SYWRSELMVN 2
SY L++N
Sbjct: 580 SYRSCVLVMN 551
>gb|AY087876.1| Arabidopsis thaliana clone 39135 mRNA, complete sequence
Length = 1299
Score = 278 bits (601), Expect = 1e-073
Identities = 101/122 (82%), Positives = 115/122 (94%)
Frame = +2 / +3
Query: 2 VHHEFTAPIGFAAPYAHWAEVLILGIPSFVGPAIVPGHMITFWLWIILRQVEAIETHSGF 181
+HHE+TAPIG+AAPYAHWAEVL+LGIP+F+GPAI PGHMITFWLWI LRQ+EAIETHSG+
Sbjct: 603 IHHEYTAPIGYAAPYAHWAEVLLLGIPTFLGPAIAPGHMITFWLWIALRQIEAIETHSGY 782
Query: 182 DFPFTPTKYIPFYGGAEYHDYHHYVGGQSQSNFASVFTYCDYLYGTDKGYRFHKTYLAKL 361
DFP++ TKYIPFYGGAEYHDYHHYVGGQSQSNFASVFTYCDY+YGTDKGYRF K L ++
Sbjct: 783 DFPWSLTKYIPFYGGAEYHDYHHYVGGQSQSNFASVFTYCDYIYGTDKGYRFQKKLLQQM 962
Query: 362 KD 367
K+
Sbjct: 963 KE 968
Score = 149 bits (321), Expect = 6e-035
Identities = 78/114 (68%), Positives = 83/114 (72%)
Frame = -2 / -3
Query: 351 RYVLWNL*PLSVPYK*SQ*VKTEAKLLWLWPPT****SWYSAPP*NGIYFVGVNGKSKPL 172
R WN *PLSVP *SQ*VKTEAKLLWL PPT** *S YSAPP*NG+YFV +GKS PL
Sbjct: 952 RSFFWNR*PLSVP*M*SQ*VKTEAKLLWLCPPT**W*S*YSAPP*NGMYFVRDHGKSYPL 773
Query: 171 CVSIAST*RSIIQSQNVIMWPGTMAGPTKEGMPSISTSAQCAYGAANPIGAVNS 10
VSIAS R I +Q VI+ PG +AGP GMP TSAQ A GAA PIGAV S
Sbjct: 772 *VSIASICRKAIHNQKVII*PGAIAGPRNVGMPRSKTSAQ*A*GAA*PIGAVYS 611
Score = 120 bits (257), Expect = 4e-026
Identities = 54/134 (40%), Positives = 91/134 (67%)
Frame = -1 / -2
Query: 403 AAVSFLAIIMPQILQLC*VCFVESVTFVSAI*VITVSENRSKIALALASYIMMIVMVFCS 224
++++ L ++ +L L +ESVTF+S+I VI VS+N SK+ LAL+S ++M++M+ S
Sbjct: 1004 SSINQLVALLGLLLHLLKKLLLESVTFISSIDVIAVSKN*SKVTLALSSNVVMVIMILSS 825
Query: 223 SIEWNILCRGEWEIKAAMCLDSLHLTEYNPEPECDHVAWNNGWPDEGGDAEYQHLSPVCI 44
+I+WN+LC+ WEI +AM DSL+L+ NP+P+ +H+ +N + G+A+ Q+LSP+ I
Sbjct: 824 TIKWNVLCQRPWEIISAMSFDSLNLS*SNPQPKGNHMTRSNSRSKKRGNAKKQNLSPMSI 645
Query: 43 WSCESYWRSELMVN 2
S + LM+N
Sbjct: 644 RSSITNRSCILMMN 603
>gb|AY035393.1| Arabidopsis thaliana putative sterol 4-alpha-methyl-oxidase mRNA,
complete cds
Length = 900
Score = 278 bits (601), Expect = 1e-073
Identities = 101/122 (82%), Positives = 115/122 (94%)
Frame = +2 / +1
Query: 2 VHHEFTAPIGFAAPYAHWAEVLILGIPSFVGPAIVPGHMITFWLWIILRQVEAIETHSGF 181
+HHE+TAPIG+AAPYAHWAEVL+LGIP+F+GPAI PGHMITFWLWI LRQ+EAIETHSG+
Sbjct: 484 IHHEYTAPIGYAAPYAHWAEVLLLGIPTFLGPAIAPGHMITFWLWIALRQIEAIETHSGY 663
Query: 182 DFPFTPTKYIPFYGGAEYHDYHHYVGGQSQSNFASVFTYCDYLYGTDKGYRFHKTYLAKL 361
DFP++ TKYIPFYGGAEYHDYHHYVGGQSQSNFASVFTYCDY+YGTDKGYRF K L ++
Sbjct: 664 DFPWSLTKYIPFYGGAEYHDYHHYVGGQSQSNFASVFTYCDYIYGTDKGYRFQKKLLQQM 843
Query: 362 KD 367
K+
Sbjct: 844 KE 849
Score = 149 bits (321), Expect = 6e-035
Identities = 78/114 (68%), Positives = 83/114 (72%)
Frame = -2 / -2
Query: 351 RYVLWNL*PLSVPYK*SQ*VKTEAKLLWLWPPT****SWYSAPP*NGIYFVGVNGKSKPL 172
R WN *PLSVP *SQ*VKTEAKLLWL PPT** *S YSAPP*NG+YFV +GKS PL
Sbjct: 833 RSFFWNR*PLSVP*M*SQ*VKTEAKLLWLCPPT**W*S*YSAPP*NGMYFVRDHGKSYPL 654
Query: 171 CVSIAST*RSIIQSQNVIMWPGTMAGPTKEGMPSISTSAQCAYGAANPIGAVNS 10
VSIAS R I +Q VI+ PG +AGP GMP TSAQ A GAA PIGAV S
Sbjct: 653 *VSIASICRKAIHNQKVII*PGAIAGPRNVGMPRSKTSAQ*A*GAA*PIGAVYS 492
Score = 120 bits (257), Expect = 4e-026
Identities = 54/134 (40%), Positives = 91/134 (67%)
Frame = -1 / -1
Query: 403 AAVSFLAIIMPQILQLC*VCFVESVTFVSAI*VITVSENRSKIALALASYIMMIVMVFCS 224
++++ L ++ +L L +ESVTF+S+I VI VS+N SK+ LAL+S ++M++M+ S
Sbjct: 885 SSINQLVALLGLLLHLLKKLLLESVTFISSIDVIAVSKN*SKVTLALSSNVVMVIMILSS 706
Query: 223 SIEWNILCRGEWEIKAAMCLDSLHLTEYNPEPECDHVAWNNGWPDEGGDAEYQHLSPVCI 44
+I+WN+LC+ WEI +AM DSL+L+ NP+P+ +H+ +N + G+A+ Q+LSP+ I
Sbjct: 705 TIKWNVLCQRPWEIISAMSFDSLNLS*SNPQPKGNHMTRSNSRSKKRGNAKKQNLSPMSI 526
Query: 43 WSCESYWRSELMVN 2
S + LM+N
Sbjct: 525 RSSITNRSCILMMN 484
>ref|NM_118404.2| Arabidopsis thaliana SMO1-2 (STEROL C4-METHYL OXIDASE); catalytic
AT4G22756 (SMO1-2) mRNA, complete cds
Length = 1298
Score = 278 bits (601), Expect = 1e-073
Identities = 101/122 (82%), Positives = 115/122 (94%)
Frame = +2 / +2
Query: 2 VHHEFTAPIGFAAPYAHWAEVLILGIPSFVGPAIVPGHMITFWLWIILRQVEAIETHSGF 181
+HHE+TAPIG+AAPYAHWAEVL+LGIP+F+GPAI PGHMITFWLWI LRQ+EAIETHSG+
Sbjct: 602 IHHEYTAPIGYAAPYAHWAEVLLLGIPTFLGPAIAPGHMITFWLWIALRQIEAIETHSGY 781
Query: 182 DFPFTPTKYIPFYGGAEYHDYHHYVGGQSQSNFASVFTYCDYLYGTDKGYRFHKTYLAKL 361
DFP++ TKYIPFYGGAEYHDYHHYVGGQSQSNFASVFTYCDY+YGTDKGYRF K L ++
Sbjct: 782 DFPWSLTKYIPFYGGAEYHDYHHYVGGQSQSNFASVFTYCDYIYGTDKGYRFQKKLLQQM 961
Query: 362 KD 367
K+
Sbjct: 962 KE 967
Score = 149 bits (321), Expect = 6e-035
Identities = 78/114 (68%), Positives = 83/114 (72%)
Frame = -2 / -3
Query: 351 RYVLWNL*PLSVPYK*SQ*VKTEAKLLWLWPPT****SWYSAPP*NGIYFVGVNGKSKPL 172
R WN *PLSVP *SQ*VKTEAKLLWL PPT** *S YSAPP*NG+YFV +GKS PL
Sbjct: 951 RSFFWNR*PLSVP*M*SQ*VKTEAKLLWLCPPT**W*S*YSAPP*NGMYFVRDHGKSYPL 772
Query: 171 CVSIAST*RSIIQSQNVIMWPGTMAGPTKEGMPSISTSAQCAYGAANPIGAVNS 10
VSIAS R I +Q VI+ PG +AGP GMP TSAQ A GAA PIGAV S
Sbjct: 771 *VSIASICRKAIHNQKVII*PGAIAGPRNVGMPRSKTSAQ*A*GAA*PIGAVYS 610
Score = 120 bits (257), Expect = 4e-026
Identities = 54/134 (40%), Positives = 91/134 (67%)
Frame = -1 / -2
Query: 403 AAVSFLAIIMPQILQLC*VCFVESVTFVSAI*VITVSENRSKIALALASYIMMIVMVFCS 224
++++ L ++ +L L +ESVTF+S+I VI VS+N SK+ LAL+S ++M++M+ S
Sbjct: 1003 SSINQLVALLGLLLHLLKKLLLESVTFISSIDVIAVSKN*SKVTLALSSNVVMVIMILSS 824
Query: 223 SIEWNILCRGEWEIKAAMCLDSLHLTEYNPEPECDHVAWNNGWPDEGGDAEYQHLSPVCI 44
+I+WN+LC+ WEI +AM DSL+L+ NP+P+ +H+ +N + G+A+ Q+LSP+ I
Sbjct: 823 TIKWNVLCQRPWEIISAMSFDSLNLS*SNPQPKGNHMTRSNSRSKKRGNAKKQNLSPMSI 644
Query: 43 WSCESYWRSELMVN 2
S + LM+N
Sbjct: 643 RSSITNRSCILMMN 602
>emb|BX827501.1|CNS0A2TZ Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTLS65ZD06 of Adult vegetative tissue of strain col-0
of Arabidopsis thaliana (thale cress)
Length = 1248
Score = 272 bits (588), Expect = 9e-072
Identities = 101/134 (75%), Positives = 117/134 (87%)
Frame = +2 / +1
Query: 2 VHHEFTAPIGFAAPYAHWAEVLILGIPSFVGPAIVPGHMITFWLWIILRQVEAIETHSGF 181
VHHE+TAPIG+AAPYAHWAEVL+LGIP+F+GPAI PGHMITFWLWI LRQ+EAIETHSG+
Sbjct: 550 VHHEYTAPIGYAAPYAHWAEVLLLGIPTFMGPAIAPGHMITFWLWIALRQMEAIETHSGY 729
Query: 182 DFPFTPTKYIPFYGGAEYHDYHHYVGGQSQSNFASVFTYCDYLYGTDKGYRFHKTYLAKL 361
DFP++ TKYIPFYGGAEYHDYHHYVGGQSQSNFASVFTYCD+ +GTDKGYRF K L ++
Sbjct: 730 DFPWSLTKYIPFYGGAEYHDYHHYVGGQSQSNFASVFTYCDHTHGTDKGYRFQKKPLEQI 909
Query: 362 KDLGHNDGEKGDGS 403
K+ + G+
Sbjct: 910 KESSKKSNKHNGGT 951
Score = 154 bits (331), Expect = 2e-036
Identities = 78/118 (66%), Positives = 87/118 (73%)
Frame = -2 / -2
Query: 354 ARYVLWNL*PLSVPYK*SQ*VKTEAKLLWLWPPT****SWYSAPP*NGIYFVGVNGKSKP 175
+R WNL*PLSVP+ *SQ V TEAKLL L PPT****SWYSAPP* G+YFV ++GKS P
Sbjct: 902 SRGFFWNL*PLSVPWV*SQYVNTEAKLL*LCPPT****SWYSAPP*KGMYFVRLHGKSYP 723
Query: 174 LCVSIAST*RSIIQSQNVIMWPGTMAGPTKEGMPSISTSAQCAYGAANPIGAVNSW*T 1
L VSIAS I +Q VI+ PG +AGP G+P TSAQCA GAA PIGAV S *T
Sbjct: 722 L*VSIASICLKAIHNQKVII*PGAIAGPINVGIPRSKTSAQCA*GAAYPIGAVYS**T 549
Score = 116 bits (247), Expect = 1e-024
Identities = 53/143 (37%), Positives = 90/143 (62%)
Frame = -1 / -1
Query: 430 LIQFHIAGSAAVSFLAIIMPQILQLC*VCFVESVTFVSAI*VITVSENRSKIALALASYI 251
L++F + G + L ++ ++L L +ESVT VS++ VITV E+ S++AL L+S +
Sbjct: 978 LLRFLLIGFCSSVMLVALLRRLLDLLKGLLLESVTLVSSMGVITVREH*SEVALTLSSNV 799
Query: 250 MMIVMVFCSSIEWNILCRGEWEIKAAMCLDSLHLTEYNPEPECDHVAWNNGWPDEGGDAE 71
+MIVMV +++E ++ C W+I + + L+S HL + NP+P+ H+ +N W + D+E
Sbjct: 798 VMIVMVLSTTVERDVFC*TPWKIISTVSLNSFHLPQSNPQPKGYHMTRSNSWSHKRRDSE 619
Query: 70 YQHLSPVCIWSCESYWRSELMVN 2
Q+ SP+CI S SY L++N
Sbjct: 618 KQNFSPMCIRSSISYRSCVLVMN 550
>ref|NM_118403.1| Arabidopsis thaliana SMO1-3 (STEROL 4-ALPHA METHYL OXIDASE);
catalytic AT4G22753 (SMO1-3) mRNA, complete cds
Length = 876
Score = 261 bits (565), Expect = 1e-068
Identities = 94/117 (80%), Positives = 108/117 (92%)
Frame = +2 / +1
Query: 2 VHHEFTAPIGFAAPYAHWAEVLILGIPSFVGPAIVPGHMITFWLWIILRQVEAIETHSGF 181
+HHE+T+PIG+A+PYAHWAE+LILGIP+F+GPAI PGH++TFWLWI LRQ EAIETHSG+
Sbjct: 472 IHHEYTSPIGYASPYAHWAEILILGIPTFLGPAIAPGHIMTFWLWISLRQFEAIETHSGY 651
Query: 182 DFPFTPTKYIPFYGGAEYHDYHHYVGGQSQSNFASVFTYCDYLYGTDKGYRFHKTYL 352
DFP++ TK IPFYGG EYHDYHHYVGGQSQSNFASVFTYCDY+YGTDKGYR HK L
Sbjct: 652 DFPWSVTKLIPFYGGPEYHDYHHYVGGQSQSNFASVFTYCDYIYGTDKGYRIHKKLL 822
Score = 159 bits (342), Expect = 8e-038
Identities = 78/114 (68%), Positives = 84/114 (73%)
Frame = -2 / -2
Query: 351 RYVLWNL*PLSVPYK*SQ*VKTEAKLLWLWPPT****SWYSAPP*NGIYFVGVNGKSKPL 172
R LW *PLSVP *SQ*VKTEAKLLWL PPT** *S YS PP*NGI FV ++GKS PL
Sbjct: 821 RSFLWIR*PLSVP*M*SQ*VKTEAKLLWLCPPT**W*S*YSGPP*NGINFVTLHGKSYPL 642
Query: 171 CVSIAST*RSIIQSQNVIMWPGTMAGPTKEGMPSISTSAQCAYGAANPIGAVNS 10
VSIAS R I +QNVI+WPG +AGP G+P I SAQCAYG A PIG V S
Sbjct: 641 WVSIASNCRKDIHNQNVIIWPGAIAGPRNVGIPRIKISAQCAYGDAYPIGDVYS 480
>gb|AY323213.1| Arabidopsis thaliana sterol-4-alpha methyl oxidase mRNA, partial
cds
Length = 820
Score = 233 bits (503), Expect(2) = 5e-063
Identities = 83/103 (80%), Positives = 97/103 (94%)
Frame = +2 / +1
Query: 2 VHHEFTAPIGFAAPYAHWAEVLILGIPSFVGPAIVPGHMITFWLWIILRQVEAIETHSGF 181
+HHE+T+PIG+A+PYAHWAE+LILGIP+F+GPAI PGH++TFWLWI LRQ EAIETHSG+
Sbjct: 472 IHHEYTSPIGYASPYAHWAEILILGIPTFLGPAIAPGHIMTFWLWISLRQFEAIETHSGY 651
Query: 182 DFPFTPTKYIPFYGGAEYHDYHHYVGGQSQSNFASVFTYCDYL 310
DFP++ TK IPFYGG EYHDYHHYVGGQSQSNFASVFTYCDY+
Sbjct: 652 DFPWSVTKLIPFYGGPEYHDYHHYVGGQSQSNFASVFTYCDYI 780
Score = 144 bits (308), Expect = 4e-033
Identities = 69/99 (69%), Positives = 75/99 (75%)
Frame = -2 / -3
Query: 306 *SQ*VKTEAKLLWLWPPT****SWYSAPP*NGIYFVGVNGKSKPLCVSIAST*RSIIQSQ 127
*SQ*VKTEAKLLWL PPT** *S YS PP*NGI FV ++GKS PL VSIAS R I +Q
Sbjct: 776 *SQ*VKTEAKLLWLCPPT**W*S*YSGPP*NGINFVTLHGKSYPLWVSIASNCRKDIHNQ 597
Query: 126 NVIMWPGTMAGPTKEGMPSISTSAQCAYGAANPIGAVNS 10
NVI+WPG +AGP G+P I SAQCAYG A PIG V S
Sbjct: 596 NVIIWPGAIAGPRNVGIPRIKISAQCAYGDAYPIGDVYS 480
Score = 30.4 bits (60), Expect(2) = 5e-063
Identities = 10/11 (90%), Positives = 10/11 (90%)
Frame = +2 / +1
Query: 311 YGTDKGYRFHK 343
YGTDKGYR HK
Sbjct: 784 YGTDKGYRIHK 816
>emb|AL049638.1|ATF16J13 Arabidopsis thaliana DNA chromosome 4, BAC clone F16J13 (ESSA project)
Length = 107600
Score = 138 bits (297), Expect(2) = 7e-062
Identities = 51/59 (86%), Positives = 57/59 (96%)
Frame = +2 / +1
Query: 2 VHHEFTAPIGFAAPYAHWAEVLILGIPSFVGPAIVPGHMITFWLWIILRQVEAIETHSG 178
VHHE+TAPIG+AAPYAHWAEVL+LGIP+F+GPAI PGHMITFWLWI LRQ+EAIETHSG
Sbjct: 88216 VHHEYTAPIGYAAPYAHWAEVLLLGIPTFMGPAIAPGHMITFWLWIALRQMEAIETHSG 88392
Score = 130 bits (278), Expect(2) = 7e-062
Identities = 46/52 (88%), Positives = 50/52 (96%)
Frame = +2 / +1
Query: 170 HSGFDFPFTPTKYIPFYGGAEYHDYHHYVGGQSQSNFASVFTYCDYLYGTDK 325
H +DFP++PTKYIPFYGGAEYHDYHHYVGGQSQSNFASVFTYCDY+YGTDK
Sbjct: 88876 HCRYDFPWSPTKYIPFYGGAEYHDYHHYVGGQSQSNFASVFTYCDYIYGTDK 89031
Score = 78.0 bits (164), Expect(2) = 6e-025
Identities = 38/48 (79%), Positives = 41/48 (85%)
Frame = -2 / -1
Query: 324 LSVPYK*SQ*VKTEAKLLWLWPPT****SWYSAPP*NGIYFVGVNGKS 181
LSVP *SQ V TEAKLL L PPT****SWYSAPP* G+YFVG++GKS
Sbjct: 89030 LSVP*M*SQYVNTEAKLL*LCPPT****SWYSAPP*KGMYFVGLHGKS 88887
Score = 67.5 bits (141), Expect(2) = 6e-025
Identities = 35/59 (59%), Positives = 39/59 (66%)
Frame = -2 / -1
Query: 177 PLCVSIAST*RSIIQSQNVIMWPGTMAGPTKEGMPSISTSAQCAYGAANPIGAVNSW*T 1
PL VSIAS I +Q VI+ PG +AGP G+P TSAQCA GAA PIGAV S *T
Sbjct: 88391 PL*VSIASICLKAIHNQKVII*PGAIAGPINVGIPRSKTSAQCA*GAAYPIGAVYS**T 88215
>emb|AL161533.2|ATCHRIV33 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 33
Length = 190026
Score = 138 bits (297), Expect(2) = 1e-061
Identities = 51/59 (86%), Positives = 57/59 (96%)
Frame = +2 / +2
Query: 2 VHHEFTAPIGFAAPYAHWAEVLILGIPSFVGPAIVPGHMITFWLWIILRQVEAIETHSG 178
VHHE+TAPIG+AAPYAHWAEVL+LGIP+F+GPAI PGHMITFWLWI LRQ+EAIETHSG
Sbjct: 112046 VHHEYTAPIGYAAPYAHWAEVLLLGIPTFMGPAIAPGHMITFWLWIALRQMEAIETHSG 112222
Score = 130 bits (278), Expect(2) = 1e-061
Identities = 46/52 (88%), Positives = 50/52 (96%)
Frame = +2 / +2
Query: 170 HSGFDFPFTPTKYIPFYGGAEYHDYHHYVGGQSQSNFASVFTYCDYLYGTDK 325
H +DFP++PTKYIPFYGGAEYHDYHHYVGGQSQSNFASVFTYCDY+YGTDK
Sbjct: 112706 HCRYDFPWSPTKYIPFYGGAEYHDYHHYVGGQSQSNFASVFTYCDYIYGTDK 112861
Score = 78.0 bits (164), Expect(2) = 1e-024
Identities = 38/48 (79%), Positives = 41/48 (85%)
Frame = -2 / -1
Query: 324 LSVPYK*SQ*VKTEAKLLWLWPPT****SWYSAPP*NGIYFVGVNGKS 181
LSVP *SQ V TEAKLL L PPT****SWYSAPP* G+YFVG++GKS
Sbjct: 112860 LSVP*M*SQYVNTEAKLL*LCPPT****SWYSAPP*KGMYFVGLHGKS 112717
Score = 67.5 bits (141), Expect(2) = 1e-024
Identities = 35/59 (59%), Positives = 39/59 (66%)
Frame = -2 / -1
Query: 177 PLCVSIAST*RSIIQSQNVIMWPGTMAGPTKEGMPSISTSAQCAYGAANPIGAVNSW*T 1
PL VSIAS I +Q VI+ PG +AGP G+P TSAQCA GAA PIGAV S *T
Sbjct: 112221 PL*VSIASICLKAIHNQKVII*PGAIAGPINVGIPRSKTSAQCA*GAAYPIGAVYS**T 112045
>emb|AL021635.1|ATT12H17 Arabidopsis thaliana DNA chromosome 4, BAC clone T12H17 (ESSAII
project)
Length = 89350
Score = 139 bits (298), Expect(2) = 5e-060
Identities = 50/59 (84%), Positives = 57/59 (96%)
Frame = +2 / -3
Query: 2 VHHEFTAPIGFAAPYAHWAEVLILGIPSFVGPAIVPGHMITFWLWIILRQVEAIETHSG 178
+HHE+TAPIG+AAPYAHWAEVL+LGIP+F+GPAI PGHMITFWLWI LRQ+EAIETHSG
Sbjct: 49172 IHHEYTAPIGYAAPYAHWAEVLLLGIPTFLGPAIAPGHMITFWLWIALRQIEAIETHSG 48996
Score = 131 bits (281), Expect(2) = 5e-056
Identities = 46/59 (77%), Positives = 56/59 (94%)
Frame = +2 / -1
Query: 2 VHHEFTAPIGFAAPYAHWAEVLILGIPSFVGPAIVPGHMITFWLWIILRQVEAIETHSG 178
+HHE+T+PIG+A+PYAHWAE+LILGIP+F+GPAI PGH++TFWLWI LRQ EAIETHSG
Sbjct: 45892 IHHEYTSPIGYASPYAHWAEILILGIPTFLGPAIAPGHIMTFWLWISLRQFEAIETHSG 45716
Score = 123 bits (263), Expect(2) = 5e-060
Identities = 44/49 (89%), Positives = 48/49 (97%)
Frame = +2 / -2
Query: 179 FDFPFTPTKYIPFYGGAEYHDYHHYVGGQSQSNFASVFTYCDYLYGTDK 325
+DFP++ TKYIPFYGGAEYHDYHHYVGGQSQSNFASVFTYCDY+YGTDK
Sbjct: 48654 YDFPWSLTKYIPFYGGAEYHDYHHYVGGQSQSNFASVFTYCDYIYGTDK 48508
Score = 117 bits (251), Expect(2) = 5e-056
Identities = 42/49 (85%), Positives = 46/49 (93%)
Frame = +2 / -3
Query: 179 FDFPFTPTKYIPFYGGAEYHDYHHYVGGQSQSNFASVFTYCDYLYGTDK 325
+DFP++ TK IPFYGG EYHDYHHYVGGQSQSNFASVFTYCDY+YGTDK
Sbjct: 45524 YDFPWSVTKLIPFYGGPEYHDYHHYVGGQSQSNFASVFTYCDYIYGTDK 45378
Score = 79.4 bits (167), Expect(2) = 1e-027
Identities = 35/56 (62%), Positives = 39/56 (69%)
Frame = -2 / +3
Query: 177 PLCVSIAST*RSIIQSQNVIMWPGTMAGPTKEGMPSISTSAQCAYGAANPIGAVNS 10
PL VSIAS R I +QNVI+WPG +AGP G+P I SAQCAYG A PIG V S
Sbjct: 45717 PLWVSIASNCRKDIHNQNVIIWPGAIAGPRNVGIPRIKISAQCAYGDAYPIGDVYS 45884
Score = 77.6 bits (163), Expect(2) = 4e-024
Identities = 39/48 (81%), Positives = 41/48 (85%)
Frame = -2 / +2
Query: 324 LSVPYK*SQ*VKTEAKLLWLWPPT****SWYSAPP*NGIYFVGVNGKS 181
LSVP *SQ*VKTEAKLLWL PPT** *S YSAPP*NG+YFV +GKS
Sbjct: 48509 LSVP*M*SQ*VKTEAKLLWLCPPT**W*S*YSAPP*NGMYFVRDHGKS 48652
Score = 74.8 bits (157), Expect(2) = 1e-027
Identities = 38/48 (79%), Positives = 40/48 (83%)
Frame = -2 / +1
Query: 324 LSVPYK*SQ*VKTEAKLLWLWPPT****SWYSAPP*NGIYFVGVNGKS 181
LSVP *SQ*VKTEAKLLWL PPT** *S YS PP*NGI FV ++GKS
Sbjct: 45379 LSVP*M*SQ*VKTEAKLLWLCPPT**W*S*YSGPP*NGINFVTLHGKS 45522
Score = 64.8 bits (135), Expect(2) = 4e-024
Identities = 34/56 (60%), Positives = 37/56 (66%)
Frame = -2 / +1
Query: 177 PLCVSIAST*RSIIQSQNVIMWPGTMAGPTKEGMPSISTSAQCAYGAANPIGAVNS 10
PL VSIAS R I +Q VI+ PG +AGP GMP TSAQ A GAA PIGAV S
Sbjct: 48997 PL*VSIASICRKAIHNQKVII*PGAIAGPRNVGMPRSKTSAQ*A*GAA*PIGAVYS 49164
>emb|AJ270060.1| Arabidopsis thaliana DNA chromosome 4, long arm
Length = 14497843
Score = 139 bits (298), Expect(2) = 7e-058
Identities = 50/59 (84%), Positives = 57/59 (96%)
Frame = +2 / -1
Query: 2 VHHEFTAPIGFAAPYAHWAEVLILGIPSFVGPAIVPGHMITFWLWIILRQVEAIETHSG 178
+HHE+TAPIG+AAPYAHWAEVL+LGIP+F+GPAI PGHMITFWLWI LRQ+EAIETHSG
Sbjct: 7868902 IHHEYTAPIGYAAPYAHWAEVLLLGIPTFLGPAIAPGHMITFWLWIALRQIEAIETHSG 7868726
Score = 138 bits (297), Expect(2) = 9e-060
Identities = 51/59 (86%), Positives = 57/59 (96%)
Frame = +2 / +2
Query: 2 VHHEFTAPIGFAAPYAHWAEVLILGIPSFVGPAIVPGHMITFWLWIILRQVEAIETHSG 178
VHHE+TAPIG+AAPYAHWAEVL+LGIP+F+GPAI PGHMITFWLWI LRQ+EAIETHSG
Sbjct: 3167630 VHHEYTAPIGYAAPYAHWAEVLLLGIPTFMGPAIAPGHMITFWLWIALRQMEAIETHSG 3167806
Score = 131 bits (281), Expect(2) = 7e-054
Identities = 46/59 (77%), Positives = 56/59 (94%)
Frame = +2 / -2
Query: 2 VHHEFTAPIGFAAPYAHWAEVLILGIPSFVGPAIVPGHMITFWLWIILRQVEAIETHSG 178
+HHE+T+PIG+A+PYAHWAE+LILGIP+F+GPAI PGH++TFWLWI LRQ EAIETHSG
Sbjct: 7865622 IHHEYTSPIGYASPYAHWAEILILGIPTFLGPAIAPGHIMTFWLWISLRQFEAIETHSG 7865446
Score = 130 bits (278), Expect(2) = 9e-060
Identities = 46/52 (88%), Positives = 50/52 (96%)
Frame = +2 / +2
Query: 170 HSGFDFPFTPTKYIPFYGGAEYHDYHHYVGGQSQSNFASVFTYCDYLYGTDK 325
H +DFP++PTKYIPFYGGAEYHDYHHYVGGQSQSNFASVFTYCDY+YGTDK
Sbjct: 3168290 HCRYDFPWSPTKYIPFYGGAEYHDYHHYVGGQSQSNFASVFTYCDYIYGTDK 3168445
Score = 123 bits (263), Expect(2) = 7e-058
Identities = 44/49 (89%), Positives = 48/49 (97%)
Frame = +2 / -3
Query: 179 FDFPFTPTKYIPFYGGAEYHDYHHYVGGQSQSNFASVFTYCDYLYGTDK 325
+DFP++ TKYIPFYGGAEYHDYHHYVGGQSQSNFASVFTYCDY+YGTDK
Sbjct: 7868384 YDFPWSLTKYIPFYGGAEYHDYHHYVGGQSQSNFASVFTYCDYIYGTDK 7868238
Score = 117 bits (251), Expect(2) = 7e-054
Identities = 42/49 (85%), Positives = 46/49 (93%)
Frame = +2 / -1
Query: 179 FDFPFTPTKYIPFYGGAEYHDYHHYVGGQSQSNFASVFTYCDYLYGTDK 325
+DFP++ TK IPFYGG EYHDYHHYVGGQSQSNFASVFTYCDY+YGTDK
Sbjct: 7865254 YDFPWSVTKLIPFYGGPEYHDYHHYVGGQSQSNFASVFTYCDYIYGTDK 7865108
Score = 79.4 bits (167), Expect(2) = 2e-025
Identities = 35/56 (62%), Positives = 39/56 (69%)
Frame = -2 / +2
Query: 177 PLCVSIAST*RSIIQSQNVIMWPGTMAGPTKEGMPSISTSAQCAYGAANPIGAVNS 10
PL VSIAS R I +QNVI+WPG +AGP G+P I SAQCAYG A PIG V S
Sbjct: 7865447 PLWVSIASNCRKDIHNQNVIIWPGAIAGPRNVGIPRIKISAQCAYGDAYPIGDVYS 7865614
Score = 78.0 bits (164), Expect(2) = 6e-023
Identities = 38/48 (79%), Positives = 41/48 (85%)
Frame = -2 / -2
Query: 324 LSVPYK*SQ*VKTEAKLLWLWPPT****SWYSAPP*NGIYFVGVNGKS 181
LSVP *SQ V TEAKLL L PPT****SWYSAPP* G+YFVG++GKS
Sbjct: 3168444 LSVP*M*SQYVNTEAKLL*LCPPT****SWYSAPP*KGMYFVGLHGKS 3168301
Score = 77.6 bits (163), Expect(2) = 6e-022
Identities = 39/48 (81%), Positives = 41/48 (85%)
Frame = -2 / +1
Query: 324 LSVPYK*SQ*VKTEAKLLWLWPPT****SWYSAPP*NGIYFVGVNGKS 181
LSVP *SQ*VKTEAKLLWL PPT** *S YSAPP*NG+YFV +GKS
Sbjct: 7868239 LSVP*M*SQ*VKTEAKLLWLCPPT**W*S*YSAPP*NGMYFVRDHGKS 7868382
Score = 74.8 bits (157), Expect(2) = 2e-025
Identities = 38/48 (79%), Positives = 40/48 (83%)
Frame = -2 / +3
Query: 324 LSVPYK*SQ*VKTEAKLLWLWPPT****SWYSAPP*NGIYFVGVNGKS 181
LSVP *SQ*VKTEAKLLWL PPT** *S YS PP*NGI FV ++GKS
Sbjct: 7865109 LSVP*M*SQ*VKTEAKLLWLCPPT**W*S*YSGPP*NGINFVTLHGKS 7865252
Score = 67.5 bits (141), Expect(2) = 6e-023
Identities = 35/59 (59%), Positives = 39/59 (66%)
Frame = -2 / -2
Query: 177 PLCVSIAST*RSIIQSQNVIMWPGTMAGPTKEGMPSISTSAQCAYGAANPIGAVNSW*T 1
PL VSIAS I +Q VI+ PG +AGP G+P TSAQCA GAA PIGAV S *T
Sbjct: 3167805 PL*VSIASICLKAIHNQKVII*PGAIAGPINVGIPRSKTSAQCA*GAAYPIGAVYS**T 3167629
Score = 64.8 bits (135), Expect(2) = 6e-022
Identities = 34/56 (60%), Positives = 37/56 (66%)
Frame = -2 / +3
Query: 177 PLCVSIAST*RSIIQSQNVIMWPGTMAGPTKEGMPSISTSAQCAYGAANPIGAVNS 10
PL VSIAS R I +Q VI+ PG +AGP GMP TSAQ A GAA PIGAV S
Sbjct: 7868727 PL*VSIASICRKAIHNQKVII*PGAIAGPRNVGMPRSKTSAQ*A*GAA*PIGAVYS 7868894
>emb|AL161557.2|ATCHRIV57 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 57
Length = 199577
Score = 139 bits (298), Expect(2) = 1e-059
Identities = 50/59 (84%), Positives = 57/59 (96%)
Frame = +2 / -2
Query: 2 VHHEFTAPIGFAAPYAHWAEVLILGIPSFVGPAIVPGHMITFWLWIILRQVEAIETHSG 178
+HHE+TAPIG+AAPYAHWAEVL+LGIP+F+GPAI PGHMITFWLWI LRQ+EAIETHSG
Sbjct: 192841 IHHEYTAPIGYAAPYAHWAEVLLLGIPTFLGPAIAPGHMITFWLWIALRQIEAIETHSG 192665
Score = 131 bits (281), Expect(2) = 1e-055
Identities = 46/59 (77%), Positives = 56/59 (94%)
Frame = +2 / -3
Query: 2 VHHEFTAPIGFAAPYAHWAEVLILGIPSFVGPAIVPGHMITFWLWIILRQVEAIETHSG 178
+HHE+T+PIG+A+PYAHWAE+LILGIP+F+GPAI PGH++TFWLWI LRQ EAIETHSG
Sbjct: 189561 IHHEYTSPIGYASPYAHWAEILILGIPTFLGPAIAPGHIMTFWLWISLRQFEAIETHSG 189385
Score = 123 bits (263), Expect(2) = 1e-059
Identities = 44/49 (89%), Positives = 48/49 (97%)
Frame = +2 / -1
Query: 179 FDFPFTPTKYIPFYGGAEYHDYHHYVGGQSQSNFASVFTYCDYLYGTDK 325
+DFP++ TKYIPFYGGAEYHDYHHYVGGQSQSNFASVFTYCDY+YGTDK
Sbjct: 192323 YDFPWSLTKYIPFYGGAEYHDYHHYVGGQSQSNFASVFTYCDYIYGTDK 192177
Score = 117 bits (251), Expect(2) = 1e-055
Identities = 42/49 (85%), Positives = 46/49 (93%)
Frame = +2 / -2
Query: 179 FDFPFTPTKYIPFYGGAEYHDYHHYVGGQSQSNFASVFTYCDYLYGTDK 325
+DFP++ TK IPFYGG EYHDYHHYVGGQSQSNFASVFTYCDY+YGTDK
Sbjct: 189193 YDFPWSVTKLIPFYGGPEYHDYHHYVGGQSQSNFASVFTYCDYIYGTDK 189047
Score = 79.4 bits (167), Expect(2) = 3e-027
Identities = 35/56 (62%), Positives = 39/56 (69%)
Frame = -2 / +2
Query: 177 PLCVSIAST*RSIIQSQNVIMWPGTMAGPTKEGMPSISTSAQCAYGAANPIGAVNS 10
PL VSIAS R I +QNVI+WPG +AGP G+P I SAQCAYG A PIG V S
Sbjct: 189386 PLWVSIASNCRKDIHNQNVIIWPGAIAGPRNVGIPRIKISAQCAYGDAYPIGDVYS 189553
Score = 77.6 bits (163), Expect(2) = 9e-024
Identities = 39/48 (81%), Positives = 41/48 (85%)
Frame = -2 / +1
Query: 324 LSVPYK*SQ*VKTEAKLLWLWPPT****SWYSAPP*NGIYFVGVNGKS 181
LSVP *SQ*VKTEAKLLWL PPT** *S YSAPP*NG+YFV +GKS
Sbjct: 192178 LSVP*M*SQ*VKTEAKLLWLCPPT**W*S*YSAPP*NGMYFVRDHGKS 192321
Score = 74.8 bits (157), Expect(2) = 3e-027
Identities = 38/48 (79%), Positives = 40/48 (83%)
Frame = -2 / +3
Query: 324 LSVPYK*SQ*VKTEAKLLWLWPPT****SWYSAPP*NGIYFVGVNGKS 181
LSVP *SQ*VKTEAKLLWL PPT** *S YS PP*NGI FV ++GKS
Sbjct: 189048 LSVP*M*SQ*VKTEAKLLWLCPPT**W*S*YSGPP*NGINFVTLHGKS 189191
Score = 64.8 bits (135), Expect(2) = 9e-024
Identities = 34/56 (60%), Positives = 37/56 (66%)
Frame = -2 / +3
Query: 177 PLCVSIAST*RSIIQSQNVIMWPGTMAGPTKEGMPSISTSAQCAYGAANPIGAVNS 10
PL VSIAS R I +Q VI+ PG +AGP GMP TSAQ A GAA PIGAV S
Sbjct: 192666 PL*VSIASICRKAIHNQKVII*PGAIAGPRNVGMPRSKTSAQ*A*GAA*PIGAVYS 192833
>ref|NC_003075.3| Arabidopsis thaliana chromosome 4, complete sequence
Length = 18585042
Score = 139 bits (298), Expect(2) = 9e-058
Identities = 50/59 (84%), Positives = 57/59 (96%)
Frame = +2 / -2
Query: 2 VHHEFTAPIGFAAPYAHWAEVLILGIPSFVGPAIVPGHMITFWLWIILRQVEAIETHSG 178
+HHE+TAPIG+AAPYAHWAEVL+LGIP+F+GPAI PGHMITFWLWI LRQ+EAIETHSG
Sbjct: 11956145 IHHEYTAPIGYAAPYAHWAEVLLLGIPTFLGPAIAPGHMITFWLWIALRQIEAIETHSG 11955969
Score = 138 bits (297), Expect(2) = 1e-059
Identities = 51/59 (86%), Positives = 57/59 (96%)
Frame = +2 / +1
Query: 2 VHHEFTAPIGFAAPYAHWAEVLILGIPSFVGPAIVPGHMITFWLWIILRQVEAIETHSG 178
VHHE+TAPIG+AAPYAHWAEVL+LGIP+F+GPAI PGHMITFWLWI LRQ+EAIETHSG
Sbjct: 7254892 VHHEYTAPIGYAAPYAHWAEVLLLGIPTFMGPAIAPGHMITFWLWIALRQMEAIETHSG 7255068
Score = 131 bits (281), Expect(2) = 9e-054
Identities = 46/59 (77%), Positives = 56/59 (94%)
Frame = +2 / -3
Query: 2 VHHEFTAPIGFAAPYAHWAEVLILGIPSFVGPAIVPGHMITFWLWIILRQVEAIETHSG 178
+HHE+T+PIG+A+PYAHWAE+LILGIP+F+GPAI PGH++TFWLWI LRQ EAIETHSG
Sbjct: 11952865 IHHEYTSPIGYASPYAHWAEILILGIPTFLGPAIAPGHIMTFWLWISLRQFEAIETHSG 11952689
Score = 130 bits (278), Expect(2) = 1e-059
Identities = 46/52 (88%), Positives = 50/52 (96%)
Frame = +2 / +1
Query: 170 HSGFDFPFTPTKYIPFYGGAEYHDYHHYVGGQSQSNFASVFTYCDYLYGTDK 325
H +DFP++PTKYIPFYGGAEYHDYHHYVGGQSQSNFASVFTYCDY+YGTDK
Sbjct: 7255552 HCRYDFPWSPTKYIPFYGGAEYHDYHHYVGGQSQSNFASVFTYCDYIYGTDK 7255707
Score = 123 bits (263), Expect(2) = 9e-058
Identities = 44/49 (89%), Positives = 48/49 (97%)
Frame = +2 / -1
Query: 179 FDFPFTPTKYIPFYGGAEYHDYHHYVGGQSQSNFASVFTYCDYLYGTDK 325
+DFP++ TKYIPFYGGAEYHDYHHYVGGQSQSNFASVFTYCDY+YGTDK
Sbjct: 11955627 YDFPWSLTKYIPFYGGAEYHDYHHYVGGQSQSNFASVFTYCDYIYGTDK 11955481
Score = 117 bits (251), Expect(2) = 9e-054
Identities = 42/49 (85%), Positives = 46/49 (93%)
Frame = +2 / -2
Query: 179 FDFPFTPTKYIPFYGGAEYHDYHHYVGGQSQSNFASVFTYCDYLYGTDK 325
+DFP++ TK IPFYGG EYHDYHHYVGGQSQSNFASVFTYCDY+YGTDK
Sbjct: 11952497 YDFPWSVTKLIPFYGGPEYHDYHHYVGGQSQSNFASVFTYCDYIYGTDK 11952351
>gb|AV538026.1|AV538026 AV538026 Arabidopsis thaliana roots Columbia Arabidopsis thaliana
cDNA clone RZ109c03F 3', mRNA sequence
Length = 617
Score = 166 bits (356), Expect = 9e-040
Identities = 55/111 (49%), Positives = 79/111 (71%)
Frame = +2 / -1
Query: 2 VHHEFTAPIGFAAPYAHWAEVLILGIPSFVGPAIVPGHMITFWLWIILRQVEAIETHSGF 181
VHHE+ P G + YAH AE+L LG + VGPA+ H+IT WLW++LR +E +E H G+
Sbjct: 575 VHHEYATPFGLTSEYAHPAEILFLGFATIVGPALTGPHLITLWLWMMLRVIETVEAHCGY 396
Query: 182 DFPFTPTKYIPFYGGAEYHDYHHYVGGQSQSNFASVFTYCDYLYGTDKGYR 334
FP++P+ ++P YGGA++HDYHH + N++S F Y D+++GTDKGYR
Sbjct: 395 HFPWSPSNFLPLYGGADFHDYHHRLLYTKSGNYSSTFVYMDWIFGTDKGYR 243
>gb|AF222719.1|AF222719 Arabidopsis thaliana sterol 4-alpha-methyl-oxidase (SMO) mRNA,
partial cds
Length = 720
Score = 166 bits (356), Expect = 9e-040
Identities = 55/111 (49%), Positives = 79/111 (71%)
Frame = +2 / +1
Query: 2 VHHEFTAPIGFAAPYAHWAEVLILGIPSFVGPAIVPGHMITFWLWIILRQVEAIETHSGF 181
VHHE+ P G + YAH AE+L LG + VGPA+ H+IT WLW++LR +E +E H G+
Sbjct: 361 VHHEYATPFGLTSEYAHPAEILFLGFATIVGPALTGPHLITLWLWMMLRVIETVEAHCGY 540
Query: 182 DFPFTPTKYIPFYGGAEYHDYHHYVGGQSQSNFASVFTYCDYLYGTDKGYR 334
FP++P+ ++P YGGA++HDYHH + N++S F Y D+++GTDKGYR
Sbjct: 541 HFPWSPSNFLPLYGGADFHDYHHRLLYTKSGNYSSTFVYMDWIFGTDKGYR 693
>gb|BT002780.1| Arabidopsis thaliana clone RAFL14-89-L18 (R20198) putative C-4
sterol methyl oxidase (At2g29390) mRNA, complete cds
Length = 1076
Score = 166 bits (356), Expect = 9e-040
Identities = 55/111 (49%), Positives = 79/111 (71%)
Frame = +2 / +3
Query: 2 VHHEFTAPIGFAAPYAHWAEVLILGIPSFVGPAIVPGHMITFWLWIILRQVEAIETHSGF 181
VHHE+ P G + YAH AE+L LG + VGPA+ H+IT WLW++LR +E +E H G+
Sbjct: 489 VHHEYATPFGLTSEYAHPAEILFLGFATIVGPALTGPHLITLWLWMMLRVIETVEAHCGY 668
Query: 182 DFPFTPTKYIPFYGGAEYHDYHHYVGGQSQSNFASVFTYCDYLYGTDKGYR 334
FP++P+ ++P YGGA++HDYHH + N++S F Y D+++GTDKGYR
Sbjct: 669 HFPWSPSNFLPLYGGADFHDYHHRLLYTKSGNYSSTFVYMDWIFGTDKGYR 821
>gb|BT005125.1| Arabidopsis thaliana clone U20198 putative C-4 sterol methyl
oxidase (At2g29390) mRNA, complete cds
Length = 814
Score = 166 bits (356), Expect = 9e-040
Identities = 55/111 (49%), Positives = 79/111 (71%)
Frame = +2 / +1
Query: 2 VHHEFTAPIGFAAPYAHWAEVLILGIPSFVGPAIVPGHMITFWLWIILRQVEAIETHSGF 181
VHHE+ P G + YAH AE+L LG + VGPA+ H+IT WLW++LR +E +E H G+
Sbjct: 424 VHHEYATPFGLTSEYAHPAEILFLGFATIVGPALTGPHLITLWLWMMLRVIETVEAHCGY 603
Query: 182 DFPFTPTKYIPFYGGAEYHDYHHYVGGQSQSNFASVFTYCDYLYGTDKGYR 334
FP++P+ ++P YGGA++HDYHH + N++S F Y D+++GTDKGYR
Sbjct: 604 HFPWSPSNFLPLYGGADFHDYHHRLLYTKSGNYSSTFVYMDWIFGTDKGYR 756
>emb|BX819624.1|CNS0A9T3 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTFB95ZD07 of Flowers and buds of strain col-0 of
Arabidopsis thaliana (thale cress)
Length = 1281
Score = 166 bits (356), Expect = 9e-040
Identities = 55/111 (49%), Positives = 79/111 (71%)
Frame = +2 / +1
Query: 2 VHHEFTAPIGFAAPYAHWAEVLILGIPSFVGPAIVPGHMITFWLWIILRQVEAIETHSGF 181
VHHE+ P G + YAH AE+L LG + VGPA+ H+IT WLW++LR +E +E H G+
Sbjct: 754 VHHEYATPFGLTSEYAHPAEILFLGFATIVGPALTGPHLITLWLWMMLRVIETVEAHCGY 933
Query: 182 DFPFTPTKYIPFYGGAEYHDYHHYVGGQSQSNFASVFTYCDYLYGTDKGYR 334
FP++P+ ++P YGGA++HDYHH + N++S F Y D+++GTDKGYR
Sbjct: 934 HFPWSPSNFLPLYGGADFHDYHHRLLYTKSGNYSSTFVYMDWIFGTDKGYR 1086
>emb|CQ769015.1| Sequence 19 from Patent WO2004007730
Length = 759
Score = 166 bits (356), Expect = 9e-040
Identities = 55/111 (49%), Positives = 79/111 (71%)
Frame = +2 / +1
Query: 2 VHHEFTAPIGFAAPYAHWAEVLILGIPSFVGPAIVPGHMITFWLWIILRQVEAIETHSGF 181
VHHE+ P G + YAH AE+L LG + VGPA+ H+IT WLW++LR +E +E H G+
Sbjct: 400 VHHEYATPFGLTSEYAHPAEILFLGFATIVGPALTGPHLITLWLWMMLRVIETVEAHCGY 579
Query: 182 DFPFTPTKYIPFYGGAEYHDYHHYVGGQSQSNFASVFTYCDYLYGTDKGYR 334
FP++P+ ++P YGGA++HDYHH + N++S F Y D+++GTDKGYR
Sbjct: 580 HFPWSPSNFLPLYGGADFHDYHHRLLYTKSGNYSSTFVYMDWIFGTDKGYR 732
>gb|AF327853.1| Arabidopsis thaliana sterol 4-alpha-methyl-oxidase mRNA, complete
cds
Length = 783
Score = 166 bits (356), Expect = 9e-040
Identities = 55/111 (49%), Positives = 79/111 (71%)
Frame = +2 / +1
Query: 2 VHHEFTAPIGFAAPYAHWAEVLILGIPSFVGPAIVPGHMITFWLWIILRQVEAIETHSGF 181
VHHE+ P G + YAH AE+L LG + VGPA+ H+IT WLW++LR +E +E H G+
Sbjct: 424 VHHEYATPFGLTSEYAHPAEILFLGFATIVGPALTGPHLITLWLWMMLRVIETVEAHCGY 603
Query: 182 DFPFTPTKYIPFYGGAEYHDYHHYVGGQSQSNFASVFTYCDYLYGTDKGYR 334
FP++P+ ++P YGGA++HDYHH + N++S F Y D+++GTDKGYR
Sbjct: 604 HFPWSPSNFLPLYGGADFHDYHHRLLYTKSGNYSSTFVYMDWIFGTDKGYR 756
>ref|NM_179802.1| Arabidopsis thaliana SMO2-1; C-4 methylsterol oxidase AT2G29390
(SMO2-1) transcript variant AT2G29390.2 mRNA, complete
cds
Length = 1063
Score = 166 bits (356), Expect = 9e-040
Identities = 55/111 (49%), Positives = 79/111 (71%)
Frame = +2 / +3
Query: 2 VHHEFTAPIGFAAPYAHWAEVLILGIPSFVGPAIVPGHMITFWLWIILRQVEAIETHSGF 181
VHHE+ P G + YAH AE+L LG + VGPA+ H+IT WLW++LR +E +E H G+
Sbjct: 489 VHHEYATPFGLTSEYAHPAEILFLGFATIVGPALTGPHLITLWLWMMLRVIETVEAHCGY 668
Query: 182 DFPFTPTKYIPFYGGAEYHDYHHYVGGQSQSNFASVFTYCDYLYGTDKGYR 334
FP++P+ ++P YGGA++HDYHH + N++S F Y D+++GTDKGYR
Sbjct: 669 HFPWSPSNFLPLYGGADFHDYHHRLLYTKSGNYSSTFVYMDWIFGTDKGYR 821
>ref|NM_201830.1| Arabidopsis thaliana SMO2-1; C-4 methylsterol oxidase AT2G29390
(SMO2-1) transcript variant AT2G29390.3 mRNA, complete
cds
Length = 1328
Score = 166 bits (356), Expect = 9e-040
Identities = 55/111 (49%), Positives = 79/111 (71%)
Frame = +2 / +1
Query: 2 VHHEFTAPIGFAAPYAHWAEVLILGIPSFVGPAIVPGHMITFWLWIILRQVEAIETHSGF 181
VHHE+ P G + YAH AE+L LG + VGPA+ H+IT WLW++LR +E +E H G+
Sbjct: 754 VHHEYATPFGLTSEYAHPAEILFLGFATIVGPALTGPHLITLWLWMMLRVIETVEAHCGY 933
Query: 182 DFPFTPTKYIPFYGGAEYHDYHHYVGGQSQSNFASVFTYCDYLYGTDKGYR 334
FP++P+ ++P YGGA++HDYHH + N++S F Y D+++GTDKGYR
Sbjct: 934 HFPWSPSNFLPLYGGADFHDYHHRLLYTKSGNYSSTFVYMDWIFGTDKGYR 1086
>gb|BT002793.1| Arabidopsis thaliana clone RAFL14-96-B14 (R20187) At1g07420 mRNA,
complete sequence
Length = 1101
Score = 163 bits (350), Expect = 6e-039
Identities = 56/115 (48%), Positives = 80/115 (69%)
Frame = +2 / +1
Query: 2 VHHEFTAPIGFAAPYAHWAEVLILGIPSFVGPAIVPGHMITFWLWIILRQVEAIETHSGF 181
VHHE+ P G + YAH AE+L LG + VGPA+ H+IT WLW++LR +E +E H G+
Sbjct: 496 VHHEYATPFGLTSEYAHPAEILFLGFATIVGPALTGPHLITLWLWMVLRVLETVEAHCGY 675
Query: 182 DFPFTPTKYIPFYGGAEYHDYHHYVGGQSQSNFASVFTYCDYLYGTDKGYRFHKT 346
FP++ + ++P YGGA++HDYHH + N++S F Y D+++GTDKGYR KT
Sbjct: 676 HFPWSLSNFLPLYGGADFHDYHHRLLYTKSGNYSSTFVYMDWIFGTDKGYRRLKT 840
>gb|AY087267.1| Arabidopsis thaliana clone 33426 mRNA, complete sequence
Length = 1126
Score = 163 bits (350), Expect = 6e-039
Identities = 56/115 (48%), Positives = 80/115 (69%)
Frame = +2 / +2
Query: 2 VHHEFTAPIGFAAPYAHWAEVLILGIPSFVGPAIVPGHMITFWLWIILRQVEAIETHSGF 181
VHHE+ P G + YAH AE+L LG + VGPA+ H+IT WLW++LR +E +E H G+
Sbjct: 527 VHHEYATPFGLTSEYAHPAEILFLGFATIVGPALTGPHLITLWLWMVLRVLETVEAHCGY 706
Query: 182 DFPFTPTKYIPFYGGAEYHDYHHYVGGQSQSNFASVFTYCDYLYGTDKGYRFHKT 346
FP++ + ++P YGGA++HDYHH + N++S F Y D+++GTDKGYR KT
Sbjct: 707 HFPWSLSNFLPLYGGADFHDYHHRLLYTKSGNYSSTFVYMDWIFGTDKGYRRLKT 871
>emb|BX815281.1|CNS0ABC4 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTLS49ZE01 of Adult vegetative tissue of strain col-0
of Arabidopsis thaliana (thale cress)
Length = 1318
Score = 163 bits (350), Expect = 6e-039
Identities = 56/115 (48%), Positives = 80/115 (69%)
Frame = +2 / +1
Query: 2 VHHEFTAPIGFAAPYAHWAEVLILGIPSFVGPAIVPGHMITFWLWIILRQVEAIETHSGF 181
VHHE+ P G + YAH AE+L LG + VGPA+ H+IT WLW++LR +E +E H G+
Sbjct: 724 VHHEYATPFGLTSEYAHPAEILFLGFATIVGPALTGPHLITLWLWMVLRVLETVEAHCGY 903
Query: 182 DFPFTPTKYIPFYGGAEYHDYHHYVGGQSQSNFASVFTYCDYLYGTDKGYRFHKT 346
FP++ + ++P YGGA++HDYHH + N++S F Y D+++GTDKGYR KT
Sbjct: 904 HFPWSLSNFLPLYGGADFHDYHHRLLYTKSGNYSSTFVYMDWIFGTDKGYRRLKT 1068
>emb|BX817847.1|CNS0AB3I Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTSIL44ZH05 of Silique of strain col-0 of Arabidopsis
thaliana (thale cress)
Length = 1051
Score = 163 bits (350), Expect = 6e-039
Identities = 56/115 (48%), Positives = 80/115 (69%)
Frame = +2 / +3
Query: 2 VHHEFTAPIGFAAPYAHWAEVLILGIPSFVGPAIVPGHMITFWLWIILRQVEAIETHSGF 181
VHHE+ P G + YAH AE+L LG + VGPA+ H+IT WLW++LR +E +E H G+
Sbjct: 477 VHHEYATPFGLTSEYAHPAEILFLGFATIVGPALTGPHLITLWLWMVLRVLETVEAHCGY 656
Query: 182 DFPFTPTKYIPFYGGAEYHDYHHYVGGQSQSNFASVFTYCDYLYGTDKGYRFHKT 346
FP++ + ++P YGGA++HDYHH + N++S F Y D+++GTDKGYR KT
Sbjct: 657 HFPWSLSNFLPLYGGADFHDYHHRLLYTKSGNYSSTFVYMDWIFGTDKGYRRLKT 821
>gb|BT015609.1| Arabidopsis thaliana At1g07420 mRNA sequence
Length = 543
Score = 163 bits (350), Expect = 6e-039
Identities = 56/115 (48%), Positives = 80/115 (69%)
Frame = +2 / +1
Query: 2 VHHEFTAPIGFAAPYAHWAEVLILGIPSFVGPAIVPGHMITFWLWIILRQVEAIETHSGF 181
VHHE+ P G + YAH AE+L LG + VGPA+ H+IT WLW++LR +E +E H G+
Sbjct: 166 VHHEYATPFGLTSEYAHPAEILFLGFATIVGPALTGPHLITLWLWMVLRVLETVEAHCGY 345
Query: 182 DFPFTPTKYIPFYGGAEYHDYHHYVGGQSQSNFASVFTYCDYLYGTDKGYRFHKT 346
FP++ + ++P YGGA++HDYHH + N++S F Y D+++GTDKGYR KT
Sbjct: 346 HFPWSLSNFLPLYGGADFHDYHHRLLYTKSGNYSSTFVYMDWIFGTDKGYRRLKT 510
>gb|AF346734.1| Arabidopsis thaliana sterol 4-alpha-methyl-oxidase mRNA, complete
cds
Length = 801
Score = 163 bits (350), Expect = 6e-039
Identities = 56/115 (48%), Positives = 80/115 (69%)
Frame = +2 / +1
Query: 2 VHHEFTAPIGFAAPYAHWAEVLILGIPSFVGPAIVPGHMITFWLWIILRQVEAIETHSGF 181
VHHE+ P G + YAH AE+L LG + VGPA+ H+IT WLW++LR +E +E H G+
Sbjct: 424 VHHEYATPFGLTSEYAHPAEILFLGFATIVGPALTGPHLITLWLWMVLRVLETVEAHCGY 603
Query: 182 DFPFTPTKYIPFYGGAEYHDYHHYVGGQSQSNFASVFTYCDYLYGTDKGYRFHKT 346
FP++ + ++P YGGA++HDYHH + N++S F Y D+++GTDKGYR KT
Sbjct: 604 HFPWSLSNFLPLYGGADFHDYHHRLLYTKSGNYSSTFVYMDWIFGTDKGYRRLKT 768
>ref|NM_100616.2| Arabidopsis thaliana SMO2-2; C-4 methylsterol oxidase AT1G07420
(SMO2-2) transcript variant AT1G07420.1 mRNA, complete
cds
Length = 1168
Score = 163 bits (350), Expect = 6e-039
Identities = 56/115 (48%), Positives = 80/115 (69%)
Frame = +2 / +2
Query: 2 VHHEFTAPIGFAAPYAHWAEVLILGIPSFVGPAIVPGHMITFWLWIILRQVEAIETHSGF 181
VHHE+ P G + YAH AE+L LG + VGPA+ H+IT WLW++LR +E +E H G+
Sbjct: 527 VHHEYATPFGLTSEYAHPAEILFLGFATIVGPALTGPHLITLWLWMVLRVLETVEAHCGY 706
Query: 182 DFPFTPTKYIPFYGGAEYHDYHHYVGGQSQSNFASVFTYCDYLYGTDKGYRFHKT 346
FP++ + ++P YGGA++HDYHH + N++S F Y D+++GTDKGYR KT
Sbjct: 707 HFPWSLSNFLPLYGGADFHDYHHRLLYTKSGNYSSTFVYMDWIFGTDKGYRRLKT 871
>ref|NM_202048.1| Arabidopsis thaliana SMO2-2; C-4 methylsterol oxidase AT1G07420
(SMO2-2) transcript variant AT1G07420.2 mRNA, complete
cds
Length = 1365
Score = 163 bits (350), Expect = 6e-039
Identities = 56/115 (48%), Positives = 80/115 (69%)
Frame = +2 / +1
Query: 2 VHHEFTAPIGFAAPYAHWAEVLILGIPSFVGPAIVPGHMITFWLWIILRQVEAIETHSGF 181
VHHE+ P G + YAH AE+L LG + VGPA+ H+IT WLW++LR +E +E H G+
Sbjct: 724 VHHEYATPFGLTSEYAHPAEILFLGFATIVGPALTGPHLITLWLWMVLRVLETVEAHCGY 903
Query: 182 DFPFTPTKYIPFYGGAEYHDYHHYVGGQSQSNFASVFTYCDYLYGTDKGYRFHKT 346
FP++ + ++P YGGA++HDYHH + N++S F Y D+++GTDKGYR KT
Sbjct: 904 HFPWSLSNFLPLYGGADFHDYHHRLLYTKSGNYSSTFVYMDWIFGTDKGYRRLKT 1068
>gb|H37509.1|H37509 15638 Lambda-PRL2 Arabidopsis thaliana cDNA clone 182J14T7, mRNA
sequence
Length = 363
Score = 159 bits (341), Expect = 1e-037
Identities = 58/74 (78%), Positives = 66/74 (89%)
Frame = +2 / +3
Query: 2 VHHEFTAPIGFAAPYAHWAEVLILGIPSFVGPAIVPGHMITFWLWIILRQVEAIETHSGF 181
VHH +TAPIG+ APYAHWAEVL+LGIP+F+GPAI PGHMIT WLWI LRQ+EAIETHSG+
Sbjct: 114 VHHXYTAPIGYXAPYAHWAEVLLLGIPTFMGPAIAPGHMITXWLWIALRQMEAIETHSGY 293
Query: 182 DFPFTPTKYIPFYG 223
FP+ PTKYIP YG
Sbjct: 294 XFPWGPTKYIPXYG 335
>gb|BX840571.1|BX840571 BX840571 Arabidopsis thaliana Silique Col-0 Arabidopsis thaliana
cDNA clone GSLTSIL67ZB01 5PRIM, mRNA sequence
Length = 972
Score = 157 bits (338), Expect = 3e-037
Identities = 54/111 (48%), Positives = 77/111 (69%)
Frame = +2 / +2
Query: 2 VHHEFTAPIGFAAPYAHWAEVLILGIPSFVGPAIVPGHMITFWLWIILRQVEAIETHSGF 181
VHHE+ P G + YAH AE+L LG + VGPA+ H+IT WL +LR +E +E H G+
Sbjct: 434 VHHEYATPFGLTSEYAHPAEILFLGFATIVGPALTGPHLITLWLKKMLRVIETVEAHCGY 613
Query: 182 DFPFTPTKYIPFYGGAEYHDYHHYVGGQSQSNFASVFTYCDYLYGTDKGYR 334
FP++P+ ++P YGGA++HDYHH + N++S F Y D+++GTDKGYR
Sbjct: 614 HFPWSPSNFLPLYGGADFHDYHHRLLYTKSGNYSSTFVYMDWIFGTDKGYR 766
>ref|NM_128493.2| Arabidopsis thaliana SMO2-1; C-4 methylsterol oxidase AT2G29390
(SMO2-1) transcript variant AT2G29390.1 mRNA, complete
cds
Length = 1104
Score = 113 bits (241), Expect(2) = 6e-035
Identities = 37/76 (48%), Positives = 54/76 (71%)
Frame = +2 / +2
Query: 2 VHHEFTAPIGFAAPYAHWAEVLILGIPSFVGPAIVPGHMITFWLWIILRQVEAIETHSGF 181
VHHE+ P G + YAH AE+L LG + VGPA+ H+IT WLW++LR +E +E H G+
Sbjct: 497 VHHEYATPFGLTSEYAHPAEILFLGFATIVGPALTGPHLITLWLWMMLRVIETVEAHCGY 676
Query: 182 DFPFTPTKYIPFYGGA 229
FP++P+ ++P YGG+
Sbjct: 677 HFPWSPSNFLPLYGGS 724
Score = 56.5 bits (117), Expect(2) = 6e-035
Identities = 19/40 (47%), Positives = 27/40 (67%)
Frame = +2 / +2
Query: 215 FYGGAEYHDYHHYVGGQSQSNFASVFTYCDYLYGTDKGYR 334
F A++HDYHH + N++S F Y D+++GTDKGYR
Sbjct: 746 FAYSADFHDYHHRLLYTKSGNYSSTFVYMDWIFGTDKGYR 865
>gb|AY086287.1| Arabidopsis thaliana clone 23439 mRNA, complete sequence
Length = 1091
Score = 113 bits (241), Expect(2) = 6e-035
Identities = 37/76 (48%), Positives = 54/76 (71%)
Frame = +2 / +2
Query: 2 VHHEFTAPIGFAAPYAHWAEVLILGIPSFVGPAIVPGHMITFWLWIILRQVEAIETHSGF 181
VHHE+ P G + YAH AE+L LG + VGPA+ H+IT WLW++LR +E +E H G+
Sbjct: 497 VHHEYATPFGLTSEYAHPAEILFLGFATIVGPALTGPHLITLWLWMMLRVIETVEAHCGY 676
Query: 182 DFPFTPTKYIPFYGGA 229
FP++P+ ++P YGG+
Sbjct: 677 HFPWSPSNFLPLYGGS 724
Score = 56.5 bits (117), Expect(2) = 6e-035
Identities = 19/40 (47%), Positives = 27/40 (67%)
Frame = +2 / +2
Query: 215 FYGGAEYHDYHHYVGGQSQSNFASVFTYCDYLYGTDKGYR 334
F A++HDYHH + N++S F Y D+++GTDKGYR
Sbjct: 746 FAYSADFHDYHHRLLYTKSGNYSSTFVYMDWIFGTDKGYR 865
>gb|AV557159.1|AV557159 AV557159 Arabidopsis thaliana green siliques Columbia Arabidopsis
thaliana cDNA clone SQ061h02F 3', mRNA sequence
Length = 571
Score = 147 bits (315), Expect = 4e-034
Identities = 53/74 (71%), Positives = 61/74 (82%)
Frame = +2 / -2
Query: 179 FDFPFTPTKYIPFYGGAEYHDYHHYVGGQSQSNFASVFTYCDYLYGTDKGYRFHKTYLAK 358
+DFP++PTKYIPFYGGAEYHDYHHYVGGQSQSNFASVFTYCDY+YGTDKGYRF K L +
Sbjct: 570 YDFPWSPTKYIPFYGGAEYHDYHHYVGGQSQSNFASVFTYCDYIYGTDKGYRFQKKLLEQ 391
Query: 359 LKDLGHNDGEKGDG 400
+K+ + G
Sbjct: 390 IKESSKKSNKHNGG 349
>emb|BX841564.1|CNS09YF9 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTPGH62ZA10 of Hormone Treated Callus of strain col-0
of Arabidopsis thaliana (thale cress)
Length = 1051
Score = 147 bits (315), Expect = 4e-034
Identities = 51/101 (50%), Positives = 73/101 (72%)
Frame = +2 / -2
Query: 44 YAHWAEVLILGIPSFVGPAIVPGHMITFWLWIILRQVEAIETHSGFDFPFTPTKYIPFYG 223
YAH AE+L LG + VGPA+ H+ITFWLW++LR +E +E H G+ FP++ + ++P YG
Sbjct: 528 YAHPAEILFLGFATIVGPALTGPHLITFWLWMVLRVLETVEAHCGYHFPWSLSNFLPLYG 349
Query: 224 GAEYHDYHHYVGGQSQSNFASVFTYCDYLYGTDKGYRFHKT 346
GA++HDYHH + N++S F Y D+++GTDKGYR KT
Sbjct: 348 GADFHDYHHRLLYTKSGNYSSTFVYMDWIFGTDKGYRRLKT 226
>gb|BU635113.1|BU635113 016A04 Infected Arabidopsis Leaf Arabidopsis thaliana cDNA, mRNA
sequence
Length = 759
Score = 145 bits (312), Expect = 1e-033
Identities = 53/62 (85%), Positives = 60/62 (96%)
Frame = +2 / +2
Query: 2 VHHEFTAPIGFAAPYAHWAEVLILGIPSFVGPAIVPGHMITFWLWIILRQVEAIETHSGF 181
VHHE+TAPIG+AAPYAHWAEVL+LGIP+F+GPAI PGHMITFWLWI LRQ+EAIETHSG+
Sbjct: 572 VHHEYTAPIGYAAPYAHWAEVLLLGIPTFMGPAIAPGHMITFWLWIALRQMEAIETHSGY 751
Query: 182 DF 187
DF
Sbjct: 752 DF 757
>emb|BX817293.1|CNS0AB3H Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTSIL12ZC08 of Silique of strain col-0 of Arabidopsis
thaliana (thale cress)
Length = 606
Score = 144 bits (309), Expect = 3e-033
Identities = 50/101 (49%), Positives = 72/101 (71%)
Frame = +2 / +3
Query: 44 YAHWAEVLILGIPSFVGPAIVPGHMITFWLWIILRQVEAIETHSGFDFPFTPTKYIPFYG 223
YAH AE+L LG + VGPA+ H+IT WLW++LR +E +E H G+ FP++ + ++P YG
Sbjct: 6 YAHPAEILFLGFATIVGPALTGPHLITLWLWMVLRVLETVEAHCGYHFPWSLSNFLPLYG 185
Query: 224 GAEYHDYHHYVGGQSQSNFASVFTYCDYLYGTDKGYRFHKT 346
GA++HDYHH + N++S F Y D+++GTDKGYR KT
Sbjct: 186 GADFHDYHHRLLYTKSGNYSSTFVYMDWIFGTDKGYRRLKT 308
>gb|CW846749.1|CW846749 GT13595.Ds3.03.05.2004.jx57.763 Arabidopsis thaliana Landsberg Ds
insertion lines Arabidopsis thaliana genomic clone
GT13595, DNA sequence
Length = 763
Score = 139 bits (298), Expect = 9e-032
Identities = 50/59 (84%), Positives = 57/59 (96%)
Frame = +2 / -3
Query: 2 VHHEFTAPIGFAAPYAHWAEVLILGIPSFVGPAIVPGHMITFWLWIILRQVEAIETHSG 178
+HHE+TAPIG+AAPYAHWAEVL+LGIP+F+GPAI PGHMITFWLWI LRQ+EAIETHSG
Sbjct: 500 IHHEYTAPIGYAAPYAHWAEVLLLGIPTFLGPAIAPGHMITFWLWIALRQIEAIETHSG 324
>emb|AJ837421.1| Arabidopsis thaliana T-DNA flanking sequence, left border, clone
286D02
Length = 293
Score = 138 bits (297), Expect = 1e-031
Identities = 51/59 (86%), Positives = 57/59 (96%)
Frame = +2 / +2
Query: 2 VHHEFTAPIGFAAPYAHWAEVLILGIPSFVGPAIVPGHMITFWLWIILRQVEAIETHSG 178
VHHE+TAPIG+AAPYAHWAEVL+LGIP+F+GPAI PGHMITFWLWI LRQ+EAIETHSG
Sbjct: 101 VHHEYTAPIGYAAPYAHWAEVLLLGIPTFMGPAIAPGHMITFWLWIALRQMEAIETHSG 277
>gb|AV558731.1|AV558731 AV558731 Arabidopsis thaliana green siliques Columbia Arabidopsis
thaliana cDNA clone SQ105a02F 3', mRNA sequence
Length = 501
Score = 136 bits (291), Expect = 8e-031
Identities = 50/72 (69%), Positives = 58/72 (80%)
Frame = +2 / -3
Query: 185 FPFTPTKYIPFYGGAEYHDYHHYVGGQSQSNFASVFTYCDYLYGTDKGYRFHKTYLAKLK 364
FP++PTKYIPFYGGAE+HDYHHYVGGQSQSNFASVFT CDY+YGTDKGYRF K L ++K
Sbjct: 499 FPWSPTKYIPFYGGAEFHDYHHYVGGQSQSNFASVFTDCDYIYGTDKGYRFQKKLLEQIK 320
Query: 365 DLGHNDGEKGDG 400
+ + G
Sbjct: 319 ESSKKSHQHNGG 284
>gb|AV558038.1|AV558038 AV558038 Arabidopsis thaliana green siliques Columbia Arabidopsis
thaliana cDNA clone SQ087c05F 3', mRNA sequence
Length = 487
Score = 130 bits (279), Expect = 4e-029
Identities = 52/77 (67%), Positives = 61/77 (79%)
Frame = +2 / -3
Query: 137 IILRQVEAIETHSGFDFPFTPTKYIPFYGGAEYHDYHHYVGGQSQSNFASVFTYCDYLYG 316
I LRQ+EAIE SG+ FP++PTK IPF GG EYHD+H YVGGQSQS FASVFT CD +YG
Sbjct: 482 IALRQMEAIEPPSGYVFPWSPTKNIPFSGGVEYHDHHPYVGGQSQSTFASVFTACDSIYG 303
Query: 317 TDKGYRFHKTYLAKLKD 367
TDKGYRF K ++K+
Sbjct: 302 TDKGYRFQKKLF*QIKE 252
>gb|AE005172.1| Arabidopsis thaliana chromosome 1, top arm complete sequence
Length = 14221815
Score = 101 bits (215), Expect(3) = 1e-027
Identities = 33/74 (44%), Positives = 50/74 (67%)
Frame = +2 / +1
Query: 5 HHEFTAPIGFAAPYAHWAEVLILGIPSFVGPAIVPGHMITFWLWIILRQVEAIETHSGFD 184
+H + P G + YAH AE+L LG + VGPA+ H+IT WLW++LR +E +E H G+
Sbjct: 2279302 YHRYATPFGLTSEYAHPAEILFLGFATIVGPALTGPHLITLWLWMVLRVLETVEAHCGYH 2279481
Query: 185 FPFTPTKYIPFYGG 226
FP++ + ++P YGG
Sbjct: 2279482 FPWSLSNFLPLYGG 2279523
Score = 35.9 bits (72), Expect(3) = 1e-027
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +2 / +3
Query: 206 YIPFYGGAEYHDYHHYVGGQSQSNFASVFTYCDY 307
++ F A++HDYHH + N++S F Y D+
Sbjct: 2279601 FL*FGYSADFHDYHHRLLYTKSGNYSSTFVYMDW 2279702
Score = 25.4 bits (49), Expect(3) = 1e-027
Identities = 9/13 (69%), Positives = 11/13 (84%)
Frame = +2 / +1
Query: 308 LYGTDKGYRFHKT 346
++GTDKGYR KT
Sbjct: 2279806 IFGTDKGYRRLKT 2279844
>gb|AC022464.4|AC022464 Genomic sequence for Arabidopsis thaliana BAC F22G5 from chromosome I,
complete sequence
Length = 104830
Score = 101 bits (215), Expect(3) = 1e-027
Identities = 33/74 (44%), Positives = 50/74 (67%)
Frame = +2 / -1
Query: 5 HHEFTAPIGFAAPYAHWAEVLILGIPSFVGPAIVPGHMITFWLWIILRQVEAIETHSGFD 184
+H + P G + YAH AE+L LG + VGPA+ H+IT WLW++LR +E +E H G+
Sbjct: 64603 YHRYATPFGLTSEYAHPAEILFLGFATIVGPALTGPHLITLWLWMVLRVLETVEAHCGYH 64424
Query: 185 FPFTPTKYIPFYGG 226
FP++ + ++P YGG
Sbjct: 64423 FPWSLSNFLPLYGG 64382
Score = 35.9 bits (72), Expect(3) = 1e-027
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +2 / -3
Query: 206 YIPFYGGAEYHDYHHYVGGQSQSNFASVFTYCDY 307
++ F A++HDYHH + N++S F Y D+
Sbjct: 64304 FL*FGYSADFHDYHHRLLYTKSGNYSSTFVYMDW 64203
Score = 25.4 bits (49), Expect(3) = 1e-027
Identities = 9/13 (69%), Positives = 11/13 (84%)
Frame = +2 / -1
Query: 308 LYGTDKGYRFHKT 346
++GTDKGYR KT
Sbjct: 64099 IFGTDKGYRRLKT 64061
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 1,489,303,007
Number of Sequences: 1013581
Number of extensions: 22159886
Number of successful extensions: 160300
Number of sequences better than 1.0e-020: 58
length of database: 302,980,290
effective HSP length: 55
effective length of database: 247,233,335
effective search space used: 42276900285
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)