TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2440503.2.1
(542 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AE005173.1| Arabidopsis thaliana chromosome 1, bottom ar... 99 5e-036
gb|AC009243.3|AC009243 Genomic sequence for Arabidopsis tha... 99 5e-036
ref|NM_106455.2| Arabidopsis thaliana hydrolase, hydrolyzin... 99 5e-036
gb|AY064977.1| Arabidopsis thaliana At1g78060/F28K19_32 mRN... 99 5e-036
gb|CW793948.1|CW793948 WiscDsLox353H03 Arabidopsis thaliana... 86 3e-032
ref|NM_106454.3| Arabidopsis thaliana catalytic/ intramolec... 99 2e-030
gb|AV555632.1|AV555632 AV555632 Arabidopsis thaliana green ... 99 2e-030
gb|AV537852.1|AV537852 AV537852 Arabidopsis thaliana roots ... 99 9e-029
gb|BX836799.1|BX836799 BX836799 Arabidopsis thaliana Flower... 73 1e-025
gb|CW799122.1|CW799122 WiscDsLox322D02 Arabidopsis thaliana... 67 1e-021
dbj|AK117237.1| Arabidopsis thaliana At5g10560 mRNA for put... 67 3e-021
gb|AY057483.1| Arabidopsis thaliana AT5g10560/F12B17_90 mRN... 67 3e-021
ref|NM_121094.2| Arabidopsis thaliana hydrolase, hydrolyzin... 67 3e-021
emb|BX816519.1|CNS0AEJX Arabidopsis thaliana Full-length cD... 59 6e-021
>gb|AE005173.1| Arabidopsis thaliana chromosome 1, bottom arm complete sequence
Length = 14668883
Score = 99.1 bits (210), Expect(2) = 5e-036
Identities = 42/105 (40%), Positives = 60/105 (57%)
Frame = +3 / -3
Query: 195 VEAIGSETCDRLKFPAVVRVQNHGPMDGKHSVLVFMRWPNATDGSGRPASQLIGFQSLHL 374
V +G E CD K V V+N G M GKH VL+F R + R QL+GF+S+ L
Sbjct: 13591338 VSEMGKEGCDVAKTKVTVEVENQGEMAGKHPVLMFARHERGGEDGKRAEKQLVGFKSIVL 13591159
Query: 375 RATQTAHVEFEVSPCKHFSRATEDGRKVIDQGSHFVMVGEDEFEM 509
+ A +EFE+ C+H SRA E G V+++G +F+ VG+ E +
Sbjct: 13591158 SNGEKAEMEFEIGLCEHLSRANEFGVMVLEEGKYFLTVGDSELPL 13591024
Score = 73.9 bits (155), Expect(2) = 5e-036
Identities = 27/39 (69%), Positives = 32/39 (82%)
Frame = +3 / -3
Query: 3 RADPATGYPGRTYRFYRGPTVFNFGYGLSYSKYSHRFAT 119
R ATGYPGRTY+FY+GP V+ FG+GLSYS YS+RF T
Sbjct: 13591527 RMRSATGYPGRTYKFYKGPKVYEFGHGLSYSAYSYRFKT 13591411
>gb|AC009243.3|AC009243 Genomic sequence for Arabidopsis thaliana BAC F28K19 from chromosome I,
complete sequence
Length = 110565
Score = 99.1 bits (210), Expect(2) = 5e-036
Identities = 42/105 (40%), Positives = 60/105 (57%)
Frame = +3 / -1
Query: 195 VEAIGSETCDRLKFPAVVRVQNHGPMDGKHSVLVFMRWPNATDGSGRPASQLIGFQSLHL 374
V +G E CD K V V+N G M GKH VL+F R + R QL+GF+S+ L
Sbjct: 93390 VSEMGKEGCDVAKTKVTVEVENQGEMAGKHPVLMFARHERGGEDGKRAEKQLVGFKSIVL 93211
Query: 375 RATQTAHVEFEVSPCKHFSRATEDGRKVIDQGSHFVMVGEDEFEM 509
+ A +EFE+ C+H SRA E G V+++G +F+ VG+ E +
Sbjct: 93210 SNGEKAEMEFEIGLCEHLSRANEFGVMVLEEGKYFLTVGDSELPL 93076
Score = 73.9 bits (155), Expect(2) = 5e-036
Identities = 27/39 (69%), Positives = 32/39 (82%)
Frame = +3 / -1
Query: 3 RADPATGYPGRTYRFYRGPTVFNFGYGLSYSKYSHRFAT 119
R ATGYPGRTY+FY+GP V+ FG+GLSYS YS+RF T
Sbjct: 93579 RMRSATGYPGRTYKFYKGPKVYEFGHGLSYSAYSYRFKT 93463
>ref|NM_106455.2| Arabidopsis thaliana hydrolase, hydrolyzing O-glycosyl compounds
AT1G78060 mRNA, complete cds
Length = 2477
Score = 99.1 bits (210), Expect(2) = 5e-036
Identities = 42/105 (40%), Positives = 60/105 (57%)
Frame = +3 / +3
Query: 195 VEAIGSETCDRLKFPAVVRVQNHGPMDGKHSVLVFMRWPNATDGSGRPASQLIGFQSLHL 374
V +G E CD K V V+N G M GKH VL+F R + R QL+GF+S+ L
Sbjct: 2031 VSEMGKEGCDVAKTKVTVEVENQGEMAGKHPVLMFARHERGGEDGKRAEKQLVGFKSIVL 2210
Query: 375 RATQTAHVEFEVSPCKHFSRATEDGRKVIDQGSHFVMVGEDEFEM 509
+ A +EFE+ C+H SRA E G V+++G +F+ VG+ E +
Sbjct: 2211 SNGEKAEMEFEIGLCEHLSRANEFGVMVLEEGKYFLTVGDSELPL 2345
Score = 73.9 bits (155), Expect(2) = 5e-036
Identities = 27/39 (69%), Positives = 32/39 (82%)
Frame = +3 / +3
Query: 3 RADPATGYPGRTYRFYRGPTVFNFGYGLSYSKYSHRFAT 119
R ATGYPGRTY+FY+GP V+ FG+GLSYS YS+RF T
Sbjct: 1842 RMRSATGYPGRTYKFYKGPKVYEFGHGLSYSAYSYRFKT 1958
>gb|AY064977.1| Arabidopsis thaliana At1g78060/F28K19_32 mRNA, complete cds
Length = 2428
Score = 99.1 bits (210), Expect(2) = 5e-036
Identities = 42/105 (40%), Positives = 60/105 (57%)
Frame = +3 / +3
Query: 195 VEAIGSETCDRLKFPAVVRVQNHGPMDGKHSVLVFMRWPNATDGSGRPASQLIGFQSLHL 374
V +G E CD K V V+N G M GKH VL+F R + R QL+GF+S+ L
Sbjct: 2010 VSEMGKEGCDVAKTKVTVEVENQGEMAGKHPVLMFARHERGGEDGKRAEKQLVGFKSIVL 2189
Query: 375 RATQTAHVEFEVSPCKHFSRATEDGRKVIDQGSHFVMVGEDEFEM 509
+ A +EFE+ C+H SRA E G V+++G +F+ VG+ E +
Sbjct: 2190 SNGEKAEMEFEIGLCEHLSRANEFGVMVLEEGKYFLTVGDSELPL 2324
Score = 73.9 bits (155), Expect(2) = 5e-036
Identities = 27/39 (69%), Positives = 32/39 (82%)
Frame = +3 / +3
Query: 3 RADPATGYPGRTYRFYRGPTVFNFGYGLSYSKYSHRFAT 119
R ATGYPGRTY+FY+GP V+ FG+GLSYS YS+RF T
Sbjct: 1821 RMRSATGYPGRTYKFYKGPKVYEFGHGLSYSAYSYRFKT 1937
>gb|CW793948.1|CW793948 WiscDsLox353H03 Arabidopsis thaliana T-DNA insertion flanking
sequences Arabidopsis thaliana genomic, DNA sequence
Length = 805
Score = 86.3 bits (182), Expect(2) = 3e-032
Identities = 38/96 (39%), Positives = 53/96 (55%)
Frame = +3 / +3
Query: 195 VEAIGSETCDRLKFPAVVRVQNHGPMDGKHSVLVFMRWPNATDGSGRPASQLIGFQSLHL 374
V +G E CD K V V+N G M GKH VL+F R + R QL+G +S+ L
Sbjct: 513 VSEMGKEGCDVAKTKVTVEVENQGEMAGKHPVLMFARHERGGEDGKRAEKQLVGXKSIVL 692
Query: 375 RATQTAHVEFEVSPCKHFSRATEDGRKVIDQGSHFV 482
+ A +EFE+ C+H SRA E G V++ G +F+
Sbjct: 693 SNGEKAXMEFEIGLCEHLSRANEFGVMVLEXGKYFL 800
Score = 73.9 bits (155), Expect(2) = 3e-032
Identities = 27/39 (69%), Positives = 32/39 (82%)
Frame = +3 / +3
Query: 3 RADPATGYPGRTYRFYRGPTVFNFGYGLSYSKYSHRFAT 119
R ATGYPGRTY+FY+GP V+ FG+GLSYS YS+RF T
Sbjct: 324 RMRSATGYPGRTYKFYKGPKVYEFGHGLSYSAYSYRFKT 440
>ref|NM_106454.3| Arabidopsis thaliana catalytic/ intramolecular transferase,
phosphotransferases AT1G78050 mRNA, complete cds
Length = 2079
Score = 99.1 bits (210), Expect(2) = 2e-030
Identities = 42/105 (40%), Positives = 60/105 (57%)
Frame = +3 / -1
Query: 195 VEAIGSETCDRLKFPAVVRVQNHGPMDGKHSVLVFMRWPNATDGSGRPASQLIGFQSLHL 374
V +G E CD K V V+N G M GKH VL+F R + R QL+GF+S+ L
Sbjct: 1923 VSEMGKEGCDVAKTKVTVEVENQGEMAGKHPVLMFARHERGGEDGKRAEKQLVGFKSIVL 1744
Query: 375 RATQTAHVEFEVSPCKHFSRATEDGRKVIDQGSHFVMVGEDEFEM 509
+ A +EFE+ C+H SRA E G V+++G +F+ VG+ E +
Sbjct: 1743 SNGEKAEMEFEIGLCEHLSRANEFGVMVLEEGKYFLTVGDSELPL 1609
Score = 55.1 bits (114), Expect(2) = 2e-030
Identities = 19/28 (67%), Positives = 24/28 (85%)
Frame = +3 / -1
Query: 36 TYRFYRGPTVFNFGYGLSYSKYSHRFAT 119
TY+FY+GP V+ FG+GLSYS YS+RF T
Sbjct: 2079 TYKFYKGPKVYEFGHGLSYSAYSYRFKT 1996
>gb|AV555632.1|AV555632 AV555632 Arabidopsis thaliana green siliques Columbia Arabidopsis
thaliana cDNA clone SQ020h06F 3', mRNA sequence
Length = 595
Score = 99.1 bits (210), Expect(2) = 2e-030
Identities = 42/105 (40%), Positives = 60/105 (57%)
Frame = +3 / -1
Query: 195 VEAIGSETCDRLKFPAVVRVQNHGPMDGKHSVLVFMRWPNATDGSGRPASQLIGFQSLHL 374
V +G E CD K V V+N G M GKH VL+F R + R QL+GF+S+ L
Sbjct: 439 VSEMGKEGCDVAKTKVTVEVENQGEMAGKHPVLMFARHERGGEDGKRAEKQLVGFKSIVL 260
Query: 375 RATQTAHVEFEVSPCKHFSRATEDGRKVIDQGSHFVMVGEDEFEM 509
+ A +EFE+ C+H SRA E G V+++G +F+ VG+ E +
Sbjct: 259 SNGEKAEMEFEIGLCEHLSRANEFGVMVLEEGKYFLTVGDSELPL 125
Score = 55.1 bits (114), Expect(2) = 2e-030
Identities = 19/28 (67%), Positives = 24/28 (85%)
Frame = +3 / -1
Query: 36 TYRFYRGPTVFNFGYGLSYSKYSHRFAT 119
TY+FY+GP V+ FG+GLSYS YS+RF T
Sbjct: 595 TYKFYKGPKVYEFGHGLSYSAYSYRFKT 512
>gb|AV537852.1|AV537852 AV537852 Arabidopsis thaliana roots Columbia Arabidopsis thaliana
cDNA clone RZ105e10F 3', mRNA sequence
Length = 555
Score = 99.1 bits (210), Expect(2) = 9e-029
Identities = 42/105 (40%), Positives = 60/105 (57%)
Frame = +3 / -1
Query: 195 VEAIGSETCDRLKFPAVVRVQNHGPMDGKHSVLVFMRWPNATDGSGRPASQLIGFQSLHL 374
V +G E CD K V V+N G M GKH VL+F R + R QL+GF+S+ L
Sbjct: 405 VSEMGKEGCDVAKTKVTVEVENQGEMAGKHPVLMFARHERGGEDGKRAEKQLVGFKSIVL 226
Query: 375 RATQTAHVEFEVSPCKHFSRATEDGRKVIDQGSHFVMVGEDEFEM 509
+ A +EFE+ C+H SRA E G V+++G +F+ VG+ E +
Sbjct: 225 SNGEKAEMEFEIGLCEHLSRANEFGVMVLEEGKYFLTVGDSELPL 91
Score = 49.6 bits (102), Expect(2) = 9e-029
Identities = 17/26 (65%), Positives = 22/26 (84%)
Frame = +3 / -1
Query: 42 RFYRGPTVFNFGYGLSYSKYSHRFAT 119
+FY+GP V+ FG+GLSYS YS+RF T
Sbjct: 555 KFYKGPKVYEFGHGLSYSAYSYRFKT 478
>gb|BX836799.1|BX836799 BX836799 Arabidopsis thaliana Flowers and buds Col-0 Arabidopsis
thaliana cDNA clone GSLTFB33ZE01 3PRIM, mRNA sequence
Length = 859
Score = 73.0 bits (153), Expect(2) = 1e-025
Identities = 32/87 (36%), Positives = 48/87 (55%)
Frame = +3 / -2
Query: 249 RVQNHGPMDGKHSVLVFMRWPNATDGSGRPASQLIGFQSLHLRATQTAHVEFEVSPCKHF 428
R +N G M GKH VL+F R + R QL+GF+S+ L + +EFE+ C+H
Sbjct: 303 RWENQGEMAGKHPVLMFARHERGGEDGKRGEKQLVGFKSIVLSNGEKTEMEFEIGLCEHL 124
Query: 429 SRATEDGRKVIDQGSHFVMVGEDEFEM 509
SRA E G ++G + + VG+ E +
Sbjct: 123 SRANEFGVMGGEEGKYVLTVGDSELPL 43
Score = 67.0 bits (140), Expect(2) = 1e-025
Identities = 25/39 (64%), Positives = 30/39 (76%)
Frame = +3 / -3
Query: 3 RADPATGYPGRTYRFYRGPTVFNFGYGLSYSKYSHRFAT 119
R ATGYPGR +FY+GP V+ FG+GLSYS YS+RF T
Sbjct: 548 RMRSATGYPGRKKKFYKGPKVYEFGHGLSYSAYSYRFKT 432
>gb|CW799122.1|CW799122 WiscDsLox322D02 Arabidopsis thaliana T-DNA insertion flanking
sequences Arabidopsis thaliana genomic, DNA sequence
Length = 871
Score = 66.6 bits (139), Expect(2) = 1e-021
Identities = 23/41 (56%), Positives = 32/41 (78%)
Frame = +3 / -3
Query: 3 RADPATGYPGRTYRFYRGPTVFNFGYGLSYSKYSHRFATKP 125
RA+ + GYPGRTYRFY GP V++FG GLSY+K+ ++ + P
Sbjct: 719 RANSSRGYPGRTYRFYTGPQVYSFGTGLSYTKFEYKILSAP 597
Score = 60.2 bits (125), Expect(2) = 1e-021
Identities = 23/62 (37%), Positives = 37/62 (59%)
Frame = +3 / -3
Query: 327 SGRPASQLIGFQSLHLRATQTAHVEFEVSPCKHFSRATEDGRKVIDQGSHFVMVGEDEFE 506
SG P QLIG+ +H+R+ + F + PCK S A + G++VI GSH + +G+ +
Sbjct: 383 SGVPEKQLIGYDRVHVRSNEMMETVFVIDPCKQLSVANDVGKRVIPLGSHVLFLGDLQHS 204
Query: 507 MS 512
+S
Sbjct: 203 LS 198
>dbj|AK117237.1| Arabidopsis thaliana At5g10560 mRNA for putative beta-xylosidase,
complete cds, clone: RAFL16-78-O20
Length = 2433
Score = 66.6 bits (139), Expect(2) = 3e-021
Identities = 23/41 (56%), Positives = 32/41 (78%)
Frame = +3 / +2
Query: 3 RADPATGYPGRTYRFYRGPTVFNFGYGLSYSKYSHRFATKP 125
RA+ + GYPGRTYRFY GP V++FG GLSY+K+ ++ + P
Sbjct: 1826 RANSSRGYPGRTYRFYTGPQVYSFGTGLSYTKFEYKILSAP 1948
Score = 60.2 bits (125), Expect(2) = 3e-021
Identities = 23/62 (37%), Positives = 37/62 (59%)
Frame = +3 / +2
Query: 327 SGRPASQLIGFQSLHLRATQTAHVEFEVSPCKHFSRATEDGRKVIDQGSHFVMVGEDEFE 506
SG P QLIG+ +H+R+ + F + PCK S A + G++VI GSH + +G+ +
Sbjct: 2162 SGVPEKQLIGYDRVHVRSNEMMETVFVIDPCKQLSVANDVGKRVIPLGSHVLFLGDLQHS 2341
Query: 507 MS 512
+S
Sbjct: 2342 LS 2347
>gb|AY057483.1| Arabidopsis thaliana AT5g10560/F12B17_90 mRNA, complete cds
Length = 2467
Score = 66.6 bits (139), Expect(2) = 3e-021
Identities = 23/41 (56%), Positives = 32/41 (78%)
Frame = +3 / +1
Query: 3 RADPATGYPGRTYRFYRGPTVFNFGYGLSYSKYSHRFATKP 125
RA+ + GYPGRTYRFY GP V++FG GLSY+K+ ++ + P
Sbjct: 1861 RANSSRGYPGRTYRFYTGPQVYSFGTGLSYTKFEYKILSAP 1983
Score = 60.2 bits (125), Expect(2) = 3e-021
Identities = 23/62 (37%), Positives = 37/62 (59%)
Frame = +3 / +1
Query: 327 SGRPASQLIGFQSLHLRATQTAHVEFEVSPCKHFSRATEDGRKVIDQGSHFVMVGEDEFE 506
SG P QLIG+ +H+R+ + F + PCK S A + G++VI GSH + +G+ +
Sbjct: 2197 SGVPEKQLIGYDRVHVRSNEMMETVFVIDPCKQLSVANDVGKRVIPLGSHVLFLGDLQHS 2376
Query: 507 MS 512
+S
Sbjct: 2377 LS 2382
>ref|NM_121094.2| Arabidopsis thaliana hydrolase, hydrolyzing O-glycosyl compounds
AT5G10560 mRNA, complete cds
Length = 2474
Score = 66.6 bits (139), Expect(2) = 3e-021
Identities = 23/41 (56%), Positives = 32/41 (78%)
Frame = +3 / +1
Query: 3 RADPATGYPGRTYRFYRGPTVFNFGYGLSYSKYSHRFATKP 125
RA+ + GYPGRTYRFY GP V++FG GLSY+K+ ++ + P
Sbjct: 1861 RANSSRGYPGRTYRFYTGPQVYSFGTGLSYTKFEYKILSAP 1983
Score = 60.2 bits (125), Expect(2) = 3e-021
Identities = 23/62 (37%), Positives = 37/62 (59%)
Frame = +3 / +1
Query: 327 SGRPASQLIGFQSLHLRATQTAHVEFEVSPCKHFSRATEDGRKVIDQGSHFVMVGEDEFE 506
SG P QLIG+ +H+R+ + F + PCK S A + G++VI GSH + +G+ +
Sbjct: 2197 SGVPEKQLIGYDRVHVRSNEMMETVFVIDPCKQLSVANDVGKRVIPLGSHVLFLGDLQHS 2376
Query: 507 MS 512
+S
Sbjct: 2377 LS 2382
>emb|BX816519.1|CNS0AEJX Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTPGH53ZF04 of Hormone Treated Callus of strain col-0
of Arabidopsis thaliana (thale cress)
Length = 2459
Score = 59.3 bits (123), Expect(3) = 6e-021
Identities = 20/33 (60%), Positives = 26/33 (78%)
Frame = +3 / +1
Query: 27 PGRTYRFYRGPTVFNFGYGLSYSKYSHRFATKP 125
PGRTYRFY GP V+ FG+GLSY++++H A P
Sbjct: 1897 PGRTYRFYDGPVVYPFGHGLSYTRFTHNIADAP 1995
Score = 44.6 bits (91), Expect(3) = 6e-021
Identities = 17/66 (25%), Positives = 31/66 (46%)
Frame = +3 / +1
Query: 324 GSGRPASQLIGFQSLHLRATQTAHVEFEVSPCKHFSRATEDGRKVIDQGSHFVMVGEDEF 503
G P QL+ F+ +H+ + V+ + CK+ S G + I G H + +G++
Sbjct: 2167 GEWAPKKQLVAFERVHVAVGEKKRVQVNIHVCKYLSVVDRAGNRRIPIGDHGIHIGDESH 2346
Query: 504 EMSFMA 521
+S A
Sbjct: 2347 TVSLQA 2364
Score = 35.9 bits (72), Expect(3) = 6e-021
Identities = 15/31 (48%), Positives = 18/31 (58%)
Frame = +3 / +1
Query: 219 CDRLKFPAVVRVQNHGPMDGKHSVLVFMRWP 311
CDRL V V N G DG H++LVF+ P
Sbjct: 2071 CDRLSLGVHVEVTNVGSRDGTHTMLVFLAPP 2163
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 653,209,284
Number of Sequences: 1013581
Number of extensions: 7490402
Number of successful extensions: 151576
Number of sequences better than 1.0e-020: 17
length of database: 302,980,290
effective HSP length: 55
effective length of database: 247,233,335
effective search space used: 30904166875
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)