TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2440015.2.2
(605 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AV533964.1|AV533964 AV533964 Arabidopsis thaliana flower... 166 8e-040
gb|AI995871.1|AI995871 701548981 A. thaliana, Columbia Col-... 163 4e-039
gb|AU227221.1|AU227221 AU227221 RAFL14 Arabidopsis thaliana... 163 4e-039
gb|AU239225.1|AU239225 AU239225 RAFL19 Arabidopsis thaliana... 163 4e-039
gb|AY084808.1| Arabidopsis thaliana clone 11842 mRNA, compl... 163 4e-039
emb|BX818319.1|CNS0AE6C Arabidopsis thaliana Full-length cD... 163 4e-039
dbj|AK118363.1| Arabidopsis thaliana mRNA for (AY084808) RN... 163 4e-039
ref|NM_179309.2| Arabidopsis thaliana DNA-directed RNA poly... 163 4e-039
gb|CK118859.1|CK118859 215l17.p1 AtM1 Arabidopsis thaliana ... 163 4e-039
gb|BP583950.1|BP583950 BP583950 RAFL14 Arabidopsis thaliana... 158 1e-037
ref|NM_104852.1| Arabidopsis thaliana DNA-directed RNA poly... 156 4e-037
gb|AU230508.1|AU230508 AU230508 RAFL19 Arabidopsis thaliana... 120 2e-032
gb|BP607947.1|BP607947 BP607947 RAFL16 Arabidopsis thaliana... 84 2e-032
gb|BP812614.1|BP812614 BP812614 RAFL19 Arabidopsis thaliana... 133 5e-030
gb|BP562809.2|BP562809 BP562809 RAFL14 Arabidopsis thaliana... 114 2e-024
gb|BP578138.1|BP578138 BP578138 RAFL14 Arabidopsis thaliana... 75 1e-022
gb|AC011661.5|AC011661 Genomic sequence for Arabidopsis tha... 75 3e-022
gb|BP596063.1|BP596063 BP596063 RAFL15 Arabidopsis thaliana... 105 9e-022
gb|AC005882.1|AC005882 Arabidopsis thaliana chromosome I BA... 73 3e-021
>gb|AV533964.1|AV533964 AV533964 Arabidopsis thaliana flower buds Columbia Arabidopsis
thaliana cDNA clone FB071c07F 3', mRNA sequence
Length = 393
Score = 166 bits (356), Expect = 8e-040
Identities = 66/74 (89%), Positives = 71/74 (95%)
Frame = -3 / -3
Query: 498 VKMIIPVRCFTCGKVIGNKWDLYLDLLQADYSEGDALDALELFRYCCRRMLMTHVDLIEK 319
+KMIIPVRCFTCGKVIGNKWD YLDLLQ DY+EGDALDAL+L RYCCRRMLMTHVDLIEK
Sbjct: 382 LKMIIPVRCFTCGKVIGNKWDQYLDLLQLDYTEGDALDALQLVRYCCRRMLMTHVDLIEK 203
Query: 318 LLNYNTLEKTETS* 277
LLNYNTLEK++TS*
Sbjct: 202 LLNYNTLEKSDTS* 161
>gb|AI995871.1|AI995871 701548981 A. thaliana, Columbia Col-0, inflorescence-2 Arabidopsis
thaliana cDNA clone 701548981, mRNA sequence
Length = 418
Score = 163 bits (351), Expect = 4e-039
Identities = 65/74 (87%), Positives = 70/74 (94%)
Frame = -3 / -2
Query: 498 VKMIIPVRCFTCGKVIGNKWDLYLDLLQADYSEGDALDALELFRYCCRRMLMTHVDLIEK 319
+KMIIPVRCFTCGKVIGNKWD YLDLLQ DY+EGDALDAL+L RYCCRRMLMTHVDLIEK
Sbjct: 351 LKMIIPVRCFTCGKVIGNKWDQYLDLLQLDYTEGDALDALQLVRYCCRRMLMTHVDLIEK 172
Query: 318 LLNYNTLEKTETS* 277
LLNYNTLEK++ S*
Sbjct: 171 LLNYNTLEKSDNS* 130
>gb|AU227221.1|AU227221 AU227221 RAFL14 Arabidopsis thaliana cDNA clone RAFL14-88-K22 3',
mRNA sequence
Length = 423
Score = 163 bits (351), Expect = 4e-039
Identities = 65/74 (87%), Positives = 70/74 (94%)
Frame = -3 / -2
Query: 498 VKMIIPVRCFTCGKVIGNKWDLYLDLLQADYSEGDALDALELFRYCCRRMLMTHVDLIEK 319
+KMIIPVRCFTCGKVIGNKWD YLDLLQ DY+EGDALDAL+L RYCCRRMLMTHVDLIEK
Sbjct: 386 LKMIIPVRCFTCGKVIGNKWDQYLDLLQLDYTEGDALDALQLVRYCCRRMLMTHVDLIEK 207
Query: 318 LLNYNTLEKTETS* 277
LLNYNTLEK++ S*
Sbjct: 206 LLNYNTLEKSDNS* 165
>gb|AU239225.1|AU239225 AU239225 RAFL19 Arabidopsis thaliana cDNA clone RAFL19-63-A21 5',
mRNA sequence
Length = 466
Score = 163 bits (351), Expect = 4e-039
Identities = 65/74 (87%), Positives = 70/74 (94%)
Frame = -3 / +3
Query: 498 VKMIIPVRCFTCGKVIGNKWDLYLDLLQADYSEGDALDALELFRYCCRRMLMTHVDLIEK 319
+KMIIPVRCFTCGKVIGNKWD YLDLLQ DY+EGDALDAL+L RYCCRRMLMTHVDLIEK
Sbjct: 78 LKMIIPVRCFTCGKVIGNKWDQYLDLLQLDYTEGDALDALQLVRYCCRRMLMTHVDLIEK 257
Query: 318 LLNYNTLEKTETS* 277
LLNYNTLEK++ S*
Sbjct: 258 LLNYNTLEKSDNS* 299
>gb|AY084808.1| Arabidopsis thaliana clone 11842 mRNA, complete sequence
Length = 482
Score = 163 bits (351), Expect = 4e-039
Identities = 65/74 (87%), Positives = 70/74 (94%)
Frame = -3 / +2
Query: 498 VKMIIPVRCFTCGKVIGNKWDLYLDLLQADYSEGDALDALELFRYCCRRMLMTHVDLIEK 319
+KMIIPVRCFTCGKVIGNKWD YLDLLQ DY+EGDALDAL+L RYCCRRMLMTHVDLIEK
Sbjct: 116 LKMIIPVRCFTCGKVIGNKWDQYLDLLQLDYTEGDALDALQLVRYCCRRMLMTHVDLIEK 295
Query: 318 LLNYNTLEKTETS* 277
LLNYNTLEK++ S*
Sbjct: 296 LLNYNTLEKSDNS* 337
>emb|BX818319.1|CNS0AE6C Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTSIL72ZE06 of Silique of strain col-0 of Arabidopsis
thaliana (thale cress)
Length = 514
Score = 163 bits (351), Expect = 4e-039
Identities = 65/74 (87%), Positives = 70/74 (94%)
Frame = -3 / +2
Query: 498 VKMIIPVRCFTCGKVIGNKWDLYLDLLQADYSEGDALDALELFRYCCRRMLMTHVDLIEK 319
+KMIIPVRCFTCGKVIGNKWD YLDLLQ DY+EGDALDAL+L RYCCRRMLMTHVDLIEK
Sbjct: 68 LKMIIPVRCFTCGKVIGNKWDQYLDLLQLDYTEGDALDALQLVRYCCRRMLMTHVDLIEK 247
Query: 318 LLNYNTLEKTETS* 277
LLNYNTLEK++ S*
Sbjct: 248 LLNYNTLEKSDNS* 289
>dbj|AK118363.1| Arabidopsis thaliana mRNA for (AY084808) RNA polymerase II subunit
(hsRPB10), putative [Arabidopsis thaliana], complete
cds, clone: RAFL19-63-A21
Length = 471
Score = 163 bits (351), Expect = 4e-039
Identities = 65/74 (87%), Positives = 70/74 (94%)
Frame = -3 / +3
Query: 498 VKMIIPVRCFTCGKVIGNKWDLYLDLLQADYSEGDALDALELFRYCCRRMLMTHVDLIEK 319
+KMIIPVRCFTCGKVIGNKWD YLDLLQ DY+EGDALDAL+L RYCCRRMLMTHVDLIEK
Sbjct: 78 LKMIIPVRCFTCGKVIGNKWDQYLDLLQLDYTEGDALDALQLVRYCCRRMLMTHVDLIEK 257
Query: 318 LLNYNTLEKTETS* 277
LLNYNTLEK++ S*
Sbjct: 258 LLNYNTLEKSDNS* 299
>ref|NM_179309.2| Arabidopsis thaliana DNA-directed RNA polymerase AT1G11475 mRNA,
complete cds
Length = 562
Score = 163 bits (351), Expect = 4e-039
Identities = 65/74 (87%), Positives = 70/74 (94%)
Frame = -3 / +2
Query: 498 VKMIIPVRCFTCGKVIGNKWDLYLDLLQADYSEGDALDALELFRYCCRRMLMTHVDLIEK 319
+KMIIPVRCFTCGKVIGNKWD YLDLLQ DY+EGDALDAL+L RYCCRRMLMTHVDLIEK
Sbjct: 116 LKMIIPVRCFTCGKVIGNKWDQYLDLLQLDYTEGDALDALQLVRYCCRRMLMTHVDLIEK 295
Query: 318 LLNYNTLEKTETS* 277
LLNYNTLEK++ S*
Sbjct: 296 LLNYNTLEKSDNS* 337
>gb|CK118859.1|CK118859 215l17.p1 AtM1 Arabidopsis thaliana cDNA clone MPMGp2011L17215
5-PRIME, mRNA sequence
Length = 394
Score = 163 bits (351), Expect = 4e-039
Identities = 65/74 (87%), Positives = 70/74 (94%)
Frame = -3 / +1
Query: 498 VKMIIPVRCFTCGKVIGNKWDLYLDLLQADYSEGDALDALELFRYCCRRMLMTHVDLIEK 319
+KMIIPVRCFTCGKVIGNKWD YLDLLQ DY+EGDALDAL+L RYCCRRMLMTHVDLIEK
Sbjct: 40 LKMIIPVRCFTCGKVIGNKWDQYLDLLQLDYTEGDALDALQLVRYCCRRMLMTHVDLIEK 219
Query: 318 LLNYNTLEKTETS* 277
LLNYNTLEK++ S*
Sbjct: 220 LLNYNTLEKSDNS* 261
>gb|BP583950.1|BP583950 BP583950 RAFL14 Arabidopsis thaliana cDNA clone RAFL14-44-D05 3',
mRNA sequence
Length = 425
Score = 158 bits (340), Expect = 1e-037
Identities = 64/74 (86%), Positives = 69/74 (93%)
Frame = -3 / -1
Query: 498 VKMIIPVRCFTCGKVIGNKWDLYLDLLQADYSEGDALDALELFRYCCRRMLMTHVDLIEK 319
+KMIIPVRCFTCGKVIGNKWD YLDLLQ DY+EGDALDAL+L RY CRRMLMTHVDLIEK
Sbjct: 386 LKMIIPVRCFTCGKVIGNKWDQYLDLLQLDYTEGDALDALQLVRYFCRRMLMTHVDLIEK 207
Query: 318 LLNYNTLEKTETS* 277
LLNYNTLEK++ S*
Sbjct: 206 LLNYNTLEKSDNS* 165
>ref|NM_104852.1| Arabidopsis thaliana DNA-directed RNA polymerase AT1G61700 mRNA,
complete cds
Length = 216
Score = 156 bits (336), Expect = 4e-037
Identities = 61/72 (84%), Positives = 68/72 (94%)
Frame = -3 / +1
Query: 492 MIIPVRCFTCGKVIGNKWDLYLDLLQADYSEGDALDALELFRYCCRRMLMTHVDLIEKLL 313
MI+PVRCFTCGKVIGNKWD YL+LLQADY+EGDALDAL L RYCCRRMLMTHVDLIEKLL
Sbjct: 1 MIVPVRCFTCGKVIGNKWDTYLELLQADYAEGDALDALGLVRYCCRRMLMTHVDLIEKLL 180
Query: 312 NYNTLEKTETS* 277
NYNT+EK++ +*
Sbjct: 181 NYNTMEKSDPN* 216
>gb|AU230508.1|AU230508 AU230508 RAFL19 Arabidopsis thaliana cDNA clone RAFL19-63-A21 3',
mRNA sequence
Length = 416
Score = 120 bits (257), Expect(2) = 2e-032
Identities = 48/57 (84%), Positives = 53/57 (92%)
Frame = -3 / -3
Query: 447 NKWDLYLDLLQADYSEGDALDALELFRYCCRRMLMTHVDLIEKLLNYNTLEKTETS* 277
NKWD YLDLLQ DY+EG+ALDAL+L RYCCRRMLMTHVDLIEKLLNYNTLEK++ S*
Sbjct: 345 NKWDQYLDLLQLDYTEGNALDALQLVRYCCRRMLMTHVDLIEKLLNYNTLEKSDNS* 175
Score = 40.9 bits (83), Expect(2) = 2e-032
Identities = 15/16 (93%), Positives = 16/16 (100%)
Frame = -3 / -1
Query: 498 VKMIIPVRCFTCGKVI 451
+KMIIPVRCFTCGKVI
Sbjct: 395 LKMIIPVRCFTCGKVI 348
>gb|BP607947.1|BP607947 BP607947 RAFL16 Arabidopsis thaliana cDNA clone RAFL16-76-M24 3',
mRNA sequence
Length = 411
Score = 84.0 bits (177), Expect(2) = 2e-032
Identities = 34/40 (85%), Positives = 38/40 (95%)
Frame = -3 / -3
Query: 396 DALDALELFRYCCRRMLMTHVDLIEKLLNYNTLEKTETS* 277
DAL+AL+L RYCCRRMLMTHVDLIEKLLNYNTLEK++ S*
Sbjct: 280 DALNALQLVRYCCRRMLMTHVDLIEKLLNYNTLEKSDNS* 161
Score = 77.6 bits (163), Expect(2) = 2e-032
Identities = 30/37 (81%), Positives = 32/37 (86%)
Frame = -3 / -1
Query: 498 VKMIIPVRCFTCGKVIGNKWDLYLDLLQADYSEGDAL 388
+KMIIPVRCFTCGKVIGNKWD YLDL Q DY+EG L
Sbjct: 381 LKMIIPVRCFTCGKVIGNKWDQYLDLHQLDYTEGTHL 271
>gb|BP812614.1|BP812614 BP812614 RAFL19 Arabidopsis thaliana cDNA clone RAFL22-03-O13 5',
mRNA sequence
Length = 403
Score = 133 bits (285), Expect = 5e-030
Identities = 55/67 (82%), Positives = 60/67 (89%)
Frame = -3 / +3
Query: 477 RCFTCGKVIGNKWDLYLDLLQADYSEGDALDALELFRYCCRRMLMTHVDLIEKLLNYNTL 298
R FTCGKVIGNKWD YLDLLQ DY+EGDALDAL+L RY RRM+MTHVDLIEKLLNYNTL
Sbjct: 99 RWFTCGKVIGNKWDQYLDLLQLDYTEGDALDALQLVRYWWRRMVMTHVDLIEKLLNYNTL 278
Query: 297 EKTETS* 277
EK++ S*
Sbjct: 279 EKSDNS* 299
>gb|BP562809.2|BP562809 BP562809 RAFL14 Arabidopsis thaliana cDNA clone RAFL14-88-K22 5',
mRNA sequence
Length = 203
Score = 114 bits (244), Expect = 2e-024
Identities = 44/51 (86%), Positives = 46/51 (90%)
Frame = -3 / +3
Query: 498 VKMIIPVRCFTCGKVIGNKWDLYLDLLQADYSEGDALDALELFRYCCRRML 346
+KMIIPVRCFTCGKVIGNKWD YLDLLQ DY+EGD LDAL L RYCCRRML
Sbjct: 51 LKMIIPVRCFTCGKVIGNKWDQYLDLLQLDYTEGDXLDALXLVRYCCRRML 203
>gb|BP578138.1|BP578138 BP578138 RAFL14 Arabidopsis thaliana cDNA clone RAFL14-16-I15 3',
mRNA sequence
Length = 461
Score = 74.8 bits (157), Expect(2) = 1e-022
Identities = 31/44 (70%), Positives = 37/44 (84%)
Frame = -3 / -1
Query: 498 VKMIIPVRCFTCGKVIGNKWDLYLDLLQADYSEGDALDALELFR 367
+K+IIPVRCFT +VIGNK D YLDLLQ +Y+EGDALD L+L R
Sbjct: 389 LKIIIPVRCFTF*RVIGNKLDQYLDLLQLEYTEGDALDPLQLVR 258
Score = 53.3 bits (110), Expect(2) = 1e-022
Identities = 22/27 (81%), Positives = 25/27 (92%)
Frame = -3 / -3
Query: 357 RRMLMTHVDLIEKLLNYNTLEKTETS* 277
RR+LMTH DLIEKLLNYNTLEK++ S*
Sbjct: 246 RRILMTHFDLIEKLLNYNTLEKSDNS* 166
>gb|AC011661.5|AC011661 Genomic sequence for Arabidopsis thaliana BAC T23J18 from chromosome I,
complete sequence
Length = 84797
Score = 75.3 bits (158), Expect(3) = 3e-022
Identities = 29/33 (87%), Positives = 32/33 (96%)
Frame = -3 / +1
Query: 396 DALDALELFRYCCRRMLMTHVDLIEKLLNYNTL 298
DALDAL+L RYCCRRMLMTHVDLIEKLLNYN++
Sbjct: 48169 DALDALQLVRYCCRRMLMTHVDLIEKLLNYNSI 48267
Score = 46.0 bits (94), Expect(3) = 3e-022
Identities = 17/20 (85%), Positives = 18/20 (90%)
Frame = -3 / +3
Query: 456 VIGNKWDLYLDLLQADYSEG 397
VIGNKWD YLDLLQ DY+EG
Sbjct: 47343 VIGNKWDQYLDLLQLDYTEG 47402
Score = 39.1 bits (79), Expect(3) = 3e-022
Identities = 14/15 (93%), Positives = 15/15 (100%)
Frame = -3 / +1
Query: 498 VKMIIPVRCFTCGKV 454
+KMIIPVRCFTCGKV
Sbjct: 47098 LKMIIPVRCFTCGKV 47142
>gb|BP596063.1|BP596063 BP596063 RAFL15 Arabidopsis thaliana cDNA clone RAFL15-32-J08 3',
mRNA sequence
Length = 307
Score = 105 bits (225), Expect = 9e-022
Identities = 44/60 (73%), Positives = 50/60 (83%)
Frame = -3 / -2
Query: 456 VIGNKWDLYLDLLQADYSEGDALDALELFRYCCRRMLMTHVDLIEKLLNYNTLEKTETS* 277
VIGNKWD YL + +EGDALDAL+L RYC RRM+MTHVDLIEKLLNYNTLEK++ S*
Sbjct: 306 VIGNKWDQYLIFSSSTTAEGDALDALQLVRYCSRRMVMTHVDLIEKLLNYNTLEKSDNS* 127
>gb|AC005882.1|AC005882 Arabidopsis thaliana chromosome I BAC T13M11 genomic sequence, complete
sequence
Length = 87394
Score = 72.5 bits (152), Expect(3) = 3e-021
Identities = 29/32 (90%), Positives = 30/32 (93%)
Frame = -3 / +2
Query: 396 DALDALELFRYCCRRMLMTHVDLIEKLLNYNT 301
DALDAL L RYCCRRMLMTHVDLIEKLLNYN+
Sbjct: 39797 DALDALGLVRYCCRRMLMTHVDLIEKLLNYNS 39892
Score = 48.7 bits (100), Expect(3) = 3e-021
Identities = 19/26 (73%), Positives = 23/26 (88%)
Frame = -3 / +3
Query: 456 VIGNKWDLYLDLLQADYSEGDALDAL 379
VIGNKWD YL+LLQADY+EG A+ +L
Sbjct: 39156 VIGNKWDTYLELLQADYAEG*AIYSL 39233
Score = 35.9 bits (72), Expect(3) = 3e-021
Identities = 12/13 (92%), Positives = 13/13 (100%)
Frame = -3 / +3
Query: 492 MIIPVRCFTCGKV 454
MI+PVRCFTCGKV
Sbjct: 39000 MIVPVRCFTCGKV 39038
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 1,221,693,852
Number of Sequences: 1013581
Number of extensions: 16392682
Number of successful extensions: 177703
Number of sequences better than 1.0e-020: 20
length of database: 302,980,290
effective HSP length: 55
effective length of database: 247,233,335
effective search space used: 36096066910
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)