TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2419405.2.3
(1600 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
ref|NM_105241.3| Arabidopsis thaliana ATEXPB2 (ARABIDOPSIS ... 80 8e-044
gb|BT004056.1| Arabidopsis thaliana clone RAFL15-26-E06 (R2... 88 5e-040
ref|NM_130074.2| Arabidopsis thaliana ATEXPB4 (ARABIDOPSIS ... 88 5e-040
emb|BX821210.1|CNS0A89M Arabidopsis thaliana Full-length cD... 88 5e-040
gb|AC001229.1|F5I14 Sequence of BAC F5I14 from Arabidopsis ... 50 8e-037
gb|AC007234.3|AC007234 Genomic sequence for Arabidopsis tha... 50 8e-037
ref|NM_118965.2| Arabidopsis thaliana ATEXPB3 (ARABIDOPSIS ... 85 1e-030
gb|AY133801.1| Arabidopsis thaliana clone U10238 putative b... 85 4e-030
gb|AY039986.1| Arabidopsis thaliana putative beta-expansin/... 85 8e-030
gb|AY087228.1| Arabidopsis thaliana clone 33023 mRNA, compl... 85 9e-030
emb|AX589887.1| Sequence 69 from Patent WO02081695 87 2e-029
emb|AX652050.1| Sequence 948 from Patent WO03000898 87 2e-029
emb|CQ805662.1| Sequence 2073 from Patent WO2004035798 87 2e-029
gb|BT005024.1| Arabidopsis thaliana clone U20717 putative b... 87 2e-029
gb|U95967.1|ATU95967 Arabidopsis thaliana beta-expansin mRN... 87 4e-029
gb|BT003932.1| Arabidopsis thaliana clone RAFL15-12-F16 (R2... 87 4e-029
gb|AY084478.1| Arabidopsis thaliana clone 109135 mRNA, comp... 87 5e-029
ref|NM_127640.1| Arabidopsis thaliana ATEXPB1 (ARABIDOPSIS ... 87 5e-029
gb|AY619565.1| Arabidopsis thaliana beta-expansin 6 (EXPB6)... 47 3e-027
gb|CF652567.1|CF652567 63-L020523-066-003-M15-SP6P MPIZ-ADI... 85 2e-026
gb|AE005173.1| Arabidopsis thaliana chromosome 1, bottom ar... 50 2e-026
emb|BX827016.1|CNS0A45X Arabidopsis thaliana Full-length cD... 85 6e-025
ref|NM_115921.1| Arabidopsis thaliana ATEXPB5 (ARABIDOPSIS ... 51 7e-025
emb|AL049803.1|F26K10 Arabidopsis thaliana clone F26K10, **... 58 1e-022
>ref|NM_105241.3| Arabidopsis thaliana ATEXPB2 (ARABIDOPSIS THALIANA EXPANSIN B2)
AT1G65680 (ATEXPB2) mRNA, complete cds
Length = 822
Score = 80.3 bits (169), Expect(4) = 8e-044
Identities = 33/77 (42%), Positives = 52/77 (67%)
Frame = -3 / +1
Query: 1100 HFDLSGTAFGRLAKPGLNDKLRHSGIIDIEFTRVPCEFPGLKIGFHVEEYSNPVYFAVLV 921
HFDLSGTAFG +A G + +LR+ G + I + +V C + G + F V++ SN FAVLV
Sbjct: 397 HFDLSGTAFGAMAISGQDSQLRNVGELQILYKKVECNYIGKTVTFQVDKGSNANSFAVLV 576
Query: 920 EYEDGDGDVVQVDLMES 870
Y +GDG++ +++L ++
Sbjct: 577 AYVNGDGEIGRIELKQA 627
Score = 65.2 bits (136), Expect(4) = 8e-044
Identities = 24/47 (51%), Positives = 30/47 (63%)
Frame = -3 / +1
Query: 1268 QYPFMSMGSCGNQPLFKDGKGCGSCYKIRCRKDPSCSGRTETVIITD 1128
Q PF M S G LFK GKGCG+CY+++C +CS TV+ITD
Sbjct: 226 QPPFSKMVSAGGPSLFKSGKGCGACYQVKCTSKSACSKNPVTVVITD 366
Score = 49.6 bits (102), Expect(4) = 8e-044
Identities = 18/28 (64%), Positives = 23/28 (82%)
Frame = -3 / +1
Query: 749 ESGKTLVANNVIPANWRPNTFYRSFVQY 666
ESGKT+VA+NVIPANW+P Y+S V +
Sbjct: 736 ESGKTVVASNVIPANWQPGAIYKSNVNF 819
Score = 41.8 bits (85), Expect(4) = 8e-044
Identities = 11/29 (37%), Positives = 21/29 (72%)
Frame = -3 / +1
Query: 842 RWTPMRESWGSVWRMDTNHRMQPPFSIRI 756
+W M +SWG+VW++D + ++ P S+R+
Sbjct: 640 KWLSMSQSWGAVWKLDVSSPLRAPLSLRV 726
>gb|BT004056.1| Arabidopsis thaliana clone RAFL15-26-E06 (R20474) putative
beta-expansin (At2g45110) mRNA, complete cds
Length = 977
Score = 88.1 bits (186), Expect(4) = 5e-040
Identities = 34/74 (45%), Positives = 49/74 (66%)
Frame = -3 / +3
Query: 1100 HFDLSGTAFGRLAKPGLNDKLRHSGIIDIEFTRVPCEFPGLKIGFHVEEYSNPVYFAVLV 921
H DLSG A G LAKPG D+LR +G+I + + R C + G I F ++ +NP Y + +V
Sbjct: 435 HIDLSGKAMGALAKPGQADQLRSAGVIRVNYKRAACLYRGTNIVFRMDAGANPYYISFVV 614
Query: 920 EYEDGDGDVVQVDL 879
EYE+GDGD+ V++
Sbjct: 615 EYENGDGDLSNVEI 656
Score = 60.6 bits (126), Expect(4) = 5e-040
Identities = 23/45 (51%), Positives = 29/45 (64%)
Frame = -3 / +3
Query: 1262 PFMSMGSCGNQPLFKDGKGCGSCYKIRCRKDPSCSGRTETVIITD 1128
P +M S G LF +GKGCG+CY++ C P+CSG TV ITD
Sbjct: 264 PLYAMVSAGGPSLFNNGKGCGTCYQVVCIGHPACSGSPITVTITD 398
Score = 45.1 bits (92), Expect(4) = 5e-040
Identities = 17/28 (60%), Positives = 21/28 (75%)
Frame = -3 / +3
Query: 749 ESGKTLVANNVIPANWRPNTFYRSFVQY 666
ES K +VA NVIPANW+P+ YRS V +
Sbjct: 768 ESHKVIVAYNVIPANWKPDESYRSIVNF 851
Score = 30.4 bits (60), Expect(4) = 5e-040
Identities = 10/33 (30%), Positives = 21/33 (63%)
Frame = -3 / +3
Query: 854 PPTGRWTPMRESWGSVWRMDTNHRMQPPFSIRI 756
P G + M+E +VW++++ ++ PF+IR+
Sbjct: 660 PAGGSFISMQEMRSAVWKVNSGSALRGPFNIRL 758
>ref|NM_130074.2| Arabidopsis thaliana ATEXPB4 (ARABIDOPSIS THALIANA EXPANSIN B4)
AT2G45110 (ATEXPB4) mRNA, complete cds
Length = 956
Score = 88.1 bits (186), Expect(4) = 5e-040
Identities = 34/74 (45%), Positives = 49/74 (66%)
Frame = -3 / +3
Query: 1100 HFDLSGTAFGRLAKPGLNDKLRHSGIIDIEFTRVPCEFPGLKIGFHVEEYSNPVYFAVLV 921
H DLSG A G LAKPG D+LR +G+I + + R C + G I F ++ +NP Y + +V
Sbjct: 435 HIDLSGKAMGALAKPGQADQLRSAGVIRVNYKRAACLYRGTNIVFRMDAGANPYYISFVV 614
Query: 920 EYEDGDGDVVQVDL 879
EYE+GDGD+ V++
Sbjct: 615 EYENGDGDLSNVEI 656
Score = 60.6 bits (126), Expect(4) = 5e-040
Identities = 23/45 (51%), Positives = 29/45 (64%)
Frame = -3 / +3
Query: 1262 PFMSMGSCGNQPLFKDGKGCGSCYKIRCRKDPSCSGRTETVIITD 1128
P +M S G LF +GKGCG+CY++ C P+CSG TV ITD
Sbjct: 264 PLYAMVSAGGPSLFNNGKGCGTCYQVVCIGHPACSGSPITVTITD 398
Score = 45.1 bits (92), Expect(4) = 5e-040
Identities = 17/28 (60%), Positives = 21/28 (75%)
Frame = -3 / +3
Query: 749 ESGKTLVANNVIPANWRPNTFYRSFVQY 666
ES K +VA NVIPANW+P+ YRS V +
Sbjct: 768 ESHKVIVAYNVIPANWKPDESYRSIVNF 851
Score = 30.4 bits (60), Expect(4) = 5e-040
Identities = 10/33 (30%), Positives = 21/33 (63%)
Frame = -3 / +3
Query: 854 PPTGRWTPMRESWGSVWRMDTNHRMQPPFSIRI 756
P G + M+E +VW++++ ++ PF+IR+
Sbjct: 660 PAGGSFISMQEMRSAVWKVNSGSALRGPFNIRL 758
>emb|BX821210.1|CNS0A89M Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTSIL25ZE08 of Silique of strain col-0 of Arabidopsis
thaliana (thale cress)
Length = 923
Score = 88.1 bits (186), Expect(4) = 5e-040
Identities = 34/74 (45%), Positives = 49/74 (66%)
Frame = -3 / +2
Query: 1100 HFDLSGTAFGRLAKPGLNDKLRHSGIIDIEFTRVPCEFPGLKIGFHVEEYSNPVYFAVLV 921
H DLSG A G LAKPG D+LR +G+I + + R C + G I F ++ +NP Y + +V
Sbjct: 404 HIDLSGKAMGALAKPGQADQLRSAGVIRVNYKRAACLYRGTNIVFRMDAGANPYYISFVV 583
Query: 920 EYEDGDGDVVQVDL 879
EYE+GDGD+ V++
Sbjct: 584 EYENGDGDLSNVEI 625
Score = 60.6 bits (126), Expect(4) = 5e-040
Identities = 23/45 (51%), Positives = 29/45 (64%)
Frame = -3 / +2
Query: 1262 PFMSMGSCGNQPLFKDGKGCGSCYKIRCRKDPSCSGRTETVIITD 1128
P +M S G LF +GKGCG+CY++ C P+CSG TV ITD
Sbjct: 233 PLYAMVSAGGPSLFNNGKGCGTCYQVVCIGHPACSGSPITVTITD 367
Score = 45.1 bits (92), Expect(4) = 5e-040
Identities = 17/28 (60%), Positives = 21/28 (75%)
Frame = -3 / +2
Query: 749 ESGKTLVANNVIPANWRPNTFYRSFVQY 666
ES K +VA NVIPANW+P+ YRS V +
Sbjct: 737 ESHKVIVAYNVIPANWKPDESYRSIVNF 820
Score = 30.4 bits (60), Expect(4) = 5e-040
Identities = 10/33 (30%), Positives = 21/33 (63%)
Frame = -3 / +2
Query: 854 PPTGRWTPMRESWGSVWRMDTNHRMQPPFSIRI 756
P G + M+E +VW++++ ++ PF+IR+
Sbjct: 629 PAGGSFISMQEMRSAVWKVNSGSALRGPFNIRL 727
>gb|AC001229.1|F5I14 Sequence of BAC F5I14 from Arabidopsis thaliana chromosome 1, complete
sequence
Length = 109560
Score = 49.6 bits (102), Expect(6) = 8e-037
Identities = 18/28 (64%), Positives = 23/28 (82%)
Frame = -3 / +1
Query: 749 ESGKTLVANNVIPANWRPNTFYRSFVQY 666
ESGKT+VA+NVIPANW+P Y+S V +
Sbjct: 107383 ESGKTVVASNVIPANWQPGAIYKSNVNF 107466
Score = 46.0 bits (94), Expect(6) = 8e-037
Identities = 18/45 (40%), Positives = 30/45 (66%)
Frame = -3 / +1
Query: 1004 RVPCEFPGLKIGFHVEEYSNPVYFAVLVEYEDGDGDVVQVDLMES 870
RV C + G + F V++ SN FAVLV Y +GDG++ +++L ++
Sbjct: 107140 RVECNYIGKTVTFQVDKGSNANSFAVLVAYVNGDGEIGRIELKQA 107274
Score = 45.1 bits (92), Expect(6) = 8e-037
Identities = 16/28 (57%), Positives = 19/28 (67%)
Frame = -3 / +1
Query: 1268 QYPFMSMGSCGNQPLFKDGKGCGSCYKI 1185
Q PF M S G LFK GKGCG+CY++
Sbjct: 106672 QPPFSKMVSAGGPSLFKSGKGCGACYQV 106755
Score = 41.8 bits (85), Expect(6) = 8e-037
Identities = 11/29 (37%), Positives = 21/29 (72%)
Frame = -3 / +1
Query: 842 RWTPMRESWGSVWRMDTNHRMQPPFSIRI 756
+W M +SWG+VW++D + ++ P S+R+
Sbjct: 107287 KWLSMSQSWGAVWKLDVSSPLRAPLSLRV 107373
Score = 39.6 bits (80), Expect(6) = 8e-037
Identities = 16/33 (48%), Positives = 23/33 (69%)
Frame = -3 / +1
Query: 1100 HFDLSGTAFGRLAKPGLNDKLRHSGIIDIEFTR 1002
HFDLSGTAFG +A G + +LR+ G + I + +
Sbjct: 106927 HFDLSGTAFGAMAISGQDSQLRNVGELQILYKK 107025
Score = 24.9 bits (48), Expect(6) = 8e-037
Identities = 8/21 (38%), Positives = 13/21 (61%)
Frame = -3 / +1
Query: 1190 KIRCRKDPSCSGRTETVIITD 1128
+++C +CS TV+ITD
Sbjct: 106834 QVKCTSKSACSKNPVTVVITD 106896
>gb|AC007234.3|AC007234 Genomic sequence for Arabidopsis thaliana BAC F1E22, complete sequence
Length = 92356
Score = 49.6 bits (102), Expect(6) = 8e-037
Identities = 18/28 (64%), Positives = 23/28 (82%)
Frame = -3 / +3
Query: 749 ESGKTLVANNVIPANWRPNTFYRSFVQY 666
ESGKT+VA+NVIPANW+P Y+S V +
Sbjct: 25830 ESGKTVVASNVIPANWQPGAIYKSNVNF 25913
Score = 46.0 bits (94), Expect(6) = 8e-037
Identities = 18/45 (40%), Positives = 30/45 (66%)
Frame = -3 / +3
Query: 1004 RVPCEFPGLKIGFHVEEYSNPVYFAVLVEYEDGDGDVVQVDLMES 870
RV C + G + F V++ SN FAVLV Y +GDG++ +++L ++
Sbjct: 25587 RVECNYIGKTVTFQVDKGSNANSFAVLVAYVNGDGEIGRIELKQA 25721
Score = 45.1 bits (92), Expect(6) = 8e-037
Identities = 16/28 (57%), Positives = 19/28 (67%)
Frame = -3 / +3
Query: 1268 QYPFMSMGSCGNQPLFKDGKGCGSCYKI 1185
Q PF M S G LFK GKGCG+CY++
Sbjct: 25119 QPPFSKMVSAGGPSLFKSGKGCGACYQV 25202
Score = 41.8 bits (85), Expect(6) = 8e-037
Identities = 11/29 (37%), Positives = 21/29 (72%)
Frame = -3 / +3
Query: 842 RWTPMRESWGSVWRMDTNHRMQPPFSIRI 756
+W M +SWG+VW++D + ++ P S+R+
Sbjct: 25734 KWLSMSQSWGAVWKLDVSSPLRAPLSLRV 25820
Score = 39.6 bits (80), Expect(6) = 8e-037
Identities = 16/33 (48%), Positives = 23/33 (69%)
Frame = -3 / +3
Query: 1100 HFDLSGTAFGRLAKPGLNDKLRHSGIIDIEFTR 1002
HFDLSGTAFG +A G + +LR+ G + I + +
Sbjct: 25374 HFDLSGTAFGAMAISGQDSQLRNVGELQILYKK 25472
Score = 24.9 bits (48), Expect(6) = 8e-037
Identities = 8/21 (38%), Positives = 13/21 (61%)
Frame = -3 / +3
Query: 1190 KIRCRKDPSCSGRTETVIITD 1128
+++C +CS TV+ITD
Sbjct: 25281 QVKCTSKSACSKNPVTVVITD 25343
>ref|NM_118965.2| Arabidopsis thaliana ATEXPB3 (ARABIDOPSIS THALIANA EXPANSIN B3)
AT4G28250 (ATEXPB3) mRNA, complete cds
Length = 1299
Score = 84.9 bits (179), Expect(4) = 1e-030
Identities = 33/77 (42%), Positives = 50/77 (64%)
Frame = -3 / +1
Query: 1100 HFDLSGTAFGRLAKPGLNDKLRHSGIIDIEFTRVPCEFPGLKIGFHVEEYSNPVYFAVLV 921
HFDLSG FGRLA G + LR+ G+I + + R C++ G I FHV E S + ++LV
Sbjct: 460 HFDLSGAVFGRLAIAGESGPLRNRGLIPVIYRRTACKYRGKNIAFHVNEGSTDFWLSLLV 639
Query: 920 EYEDGDGDVVQVDLMES 870
E+EDG+GD+ + + ++
Sbjct: 640 EFEDGEGDIGSMHIRQA 690
Score = 57.9 bits (120), Expect(4) = 1e-030
Identities = 22/36 (61%), Positives = 26/36 (72%)
Frame = -3 / +1
Query: 1235 NQPLFKDGKGCGSCYKIRCRKDPSCSGRTETVIITD 1128
N LFK+G+GCG+CYK+RC CS R TVIITD
Sbjct: 322 NPILFKNGEGCGACYKVRCLDKSICSRRAVTVIITD 429
Score = 36.3 bits (73), Expect(4) = 1e-030
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = -3 / +1
Query: 746 SGKTLVANNVIPANWRPNTFYRSFVQYS 663
+GKTL A +V+P NW P Y S + +S
Sbjct: 796 AGKTLSATDVVPRNWAPKATYSSRLNFS 879
Score = 22.6 bits (43), Expect(4) = 1e-030
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = -3 / +3
Query: 227 IIYHHHHLHSDR*LIEKYIVMY 162
IIYH ++L ++ YI+MY
Sbjct: 1224 IIYHMNNLSLCLSIVGHYIIMY 1289
>gb|AY133801.1| Arabidopsis thaliana clone U10238 putative beta-expansin/allergen
protein (At4g28250) mRNA, complete cds
Length = 826
Score = 84.9 bits (179), Expect(3) = 4e-030
Identities = 33/77 (42%), Positives = 50/77 (64%)
Frame = -3 / +1
Query: 1100 HFDLSGTAFGRLAKPGLNDKLRHSGIIDIEFTRVPCEFPGLKIGFHVEEYSNPVYFAVLV 921
HFDLSG FGRLA G + LR+ G+I + + R C++ G I FHV E S + ++LV
Sbjct: 364 HFDLSGAVFGRLAIAGESGPLRNRGLIPVIYRRTACKYRGKNIAFHVNEGSTDFWLSLLV 543
Query: 920 EYEDGDGDVVQVDLMES 870
E+EDG+GD+ + + ++
Sbjct: 544 EFEDGEGDIGSMHIRQA 594
Score = 57.9 bits (120), Expect(3) = 4e-030
Identities = 22/36 (61%), Positives = 26/36 (72%)
Frame = -3 / +1
Query: 1235 NQPLFKDGKGCGSCYKIRCRKDPSCSGRTETVIITD 1128
N LFK+G+GCG+CYK+RC CS R TVIITD
Sbjct: 226 NPILFKNGEGCGACYKVRCLDKSICSRRAVTVIITD 333
Score = 36.3 bits (73), Expect(3) = 4e-030
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = -3 / +1
Query: 746 SGKTLVANNVIPANWRPNTFYRSFVQYS 663
+GKTL A +V+P NW P Y S + +S
Sbjct: 700 AGKTLSATDVVPRNWAPKATYSSRLNFS 783
>gb|AY039986.1| Arabidopsis thaliana putative beta-expansin/allergen protein
(At4g28250) mRNA, complete cds
Length = 1216
Score = 84.9 bits (179), Expect(3) = 8e-030
Identities = 33/77 (42%), Positives = 50/77 (64%)
Frame = -3 / +1
Query: 1100 HFDLSGTAFGRLAKPGLNDKLRHSGIIDIEFTRVPCEFPGLKIGFHVEEYSNPVYFAVLV 921
HFDLSG FGRLA G + LR+ G+I + + R C++ G I FHV E S + ++LV
Sbjct: 460 HFDLSGAVFGRLAIAGESGPLRNRGLIPVIYRRTACKYRGKNIAFHVNEGSTDFWLSLLV 639
Query: 920 EYEDGDGDVVQVDLMES 870
E+EDG+GD+ + + ++
Sbjct: 640 EFEDGEGDIGSMHIRQA 690
Score = 57.9 bits (120), Expect(3) = 8e-030
Identities = 22/36 (61%), Positives = 26/36 (72%)
Frame = -3 / +1
Query: 1235 NQPLFKDGKGCGSCYKIRCRKDPSCSGRTETVIITD 1128
N LFK+G+GCG+CYK+RC CS R TVIITD
Sbjct: 322 NPILFKNGEGCGACYKVRCLDKSICSRRAVTVIITD 429
Score = 36.3 bits (73), Expect(3) = 8e-030
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = -3 / +1
Query: 746 SGKTLVANNVIPANWRPNTFYRSFVQYS 663
+GKTL A +V+P NW P Y S + +S
Sbjct: 796 AGKTLSATDVVPRNWAPKATYSSRLNFS 879
>gb|AY087228.1| Arabidopsis thaliana clone 33023 mRNA, complete sequence
Length = 1257
Score = 84.9 bits (179), Expect(3) = 9e-030
Identities = 33/77 (42%), Positives = 50/77 (64%)
Frame = -3 / +3
Query: 1100 HFDLSGTAFGRLAKPGLNDKLRHSGIIDIEFTRVPCEFPGLKIGFHVEEYSNPVYFAVLV 921
HFDLSG FGRLA G + LR+ G+I + + R C++ G I FHV E S + ++LV
Sbjct: 465 HFDLSGAVFGRLAIAGESGPLRNRGLIPVIYRRTACKYRGKNIAFHVNEGSTDFWLSLLV 644
Query: 920 EYEDGDGDVVQVDLMES 870
E+EDG+GD+ + + ++
Sbjct: 645 EFEDGEGDIGSMHIRQA 695
Score = 57.9 bits (120), Expect(3) = 9e-030
Identities = 22/36 (61%), Positives = 26/36 (72%)
Frame = -3 / +3
Query: 1235 NQPLFKDGKGCGSCYKIRCRKDPSCSGRTETVIITD 1128
N LFK+G+GCG+CYK+RC CS R TVIITD
Sbjct: 327 NPILFKNGEGCGACYKVRCLDKSICSRRAVTVIITD 434
Score = 36.3 bits (73), Expect(3) = 9e-030
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = -3 / +3
Query: 746 SGKTLVANNVIPANWRPNTFYRSFVQYS 663
+GKTL A +V+P NW P Y S + +S
Sbjct: 801 AGKTLSATDVVPRNWAPKATYSSRLNFS 884
>emb|AX589887.1| Sequence 69 from Patent WO02081695
Length = 816
Score = 87.2 bits (184), Expect(3) = 2e-029
Identities = 32/77 (41%), Positives = 51/77 (66%)
Frame = -3 / +1
Query: 1100 HFDLSGTAFGRLAKPGLNDKLRHSGIIDIEFTRVPCEFPGLKIGFHVEEYSNPVYFAVLV 921
HFDLSG AFG +A PG N +R+ G+++I + R C++ G I FHV S + ++L+
Sbjct: 385 HFDLSGAAFGHMAIPGHNGVIRNRGLLNILYRRTACKYRGKNIAFHVNAGSTDYWLSLLI 564
Query: 920 EYEDGDGDVVQVDLMES 870
EYEDG+GD+ + + ++
Sbjct: 565 EYEDGEGDIGSMHIRQA 615
Score = 55.1 bits (114), Expect(3) = 2e-029
Identities = 21/47 (44%), Positives = 28/47 (59%)
Frame = -3 / +1
Query: 1262 PFMSMGSCGNQPLFKDGKGCGSCYKIRCRKDPSCSGRTETVIITDMN 1122
PF + + LFK G+GCG+CYK+RC CS R T+I TD +
Sbjct: 211 PFKARVGAVSPILFKGGEGCGACYKVRCLDKTICSKRAVTIIATDQS 351
Score = 34.1 bits (68), Expect(3) = 2e-029
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = -3 / +1
Query: 746 SGKTLVANNVIPANWRPNTFYRSFVQYS 663
+ KTL A +VIP+NW P Y S + +S
Sbjct: 721 NNKTLSATDVIPSNWVPKATYTSRLNFS 804
>emb|AX652050.1| Sequence 948 from Patent WO03000898
Length = 816
Score = 87.2 bits (184), Expect(3) = 2e-029
Identities = 32/77 (41%), Positives = 51/77 (66%)
Frame = -3 / +1
Query: 1100 HFDLSGTAFGRLAKPGLNDKLRHSGIIDIEFTRVPCEFPGLKIGFHVEEYSNPVYFAVLV 921
HFDLSG AFG +A PG N +R+ G+++I + R C++ G I FHV S + ++L+
Sbjct: 385 HFDLSGAAFGHMAIPGHNGVIRNRGLLNILYRRTACKYRGKNIAFHVNAGSTDYWLSLLI 564
Query: 920 EYEDGDGDVVQVDLMES 870
EYEDG+GD+ + + ++
Sbjct: 565 EYEDGEGDIGSMHIRQA 615
Score = 55.1 bits (114), Expect(3) = 2e-029
Identities = 21/47 (44%), Positives = 28/47 (59%)
Frame = -3 / +1
Query: 1262 PFMSMGSCGNQPLFKDGKGCGSCYKIRCRKDPSCSGRTETVIITDMN 1122
PF + + LFK G+GCG+CYK+RC CS R T+I TD +
Sbjct: 211 PFKARVGAVSPILFKGGEGCGACYKVRCLDKTICSKRAVTIIATDQS 351
Score = 34.1 bits (68), Expect(3) = 2e-029
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = -3 / +1
Query: 746 SGKTLVANNVIPANWRPNTFYRSFVQYS 663
+ KTL A +VIP+NW P Y S + +S
Sbjct: 721 NNKTLSATDVIPSNWVPKATYTSRLNFS 804
>emb|CQ805662.1| Sequence 2073 from Patent WO2004035798
Length = 816
Score = 87.2 bits (184), Expect(3) = 2e-029
Identities = 32/77 (41%), Positives = 51/77 (66%)
Frame = -3 / +1
Query: 1100 HFDLSGTAFGRLAKPGLNDKLRHSGIIDIEFTRVPCEFPGLKIGFHVEEYSNPVYFAVLV 921
HFDLSG AFG +A PG N +R+ G+++I + R C++ G I FHV S + ++L+
Sbjct: 385 HFDLSGAAFGHMAIPGHNGVIRNRGLLNILYRRTACKYRGKNIAFHVNAGSTDYWLSLLI 564
Query: 920 EYEDGDGDVVQVDLMES 870
EYEDG+GD+ + + ++
Sbjct: 565 EYEDGEGDIGSMHIRQA 615
Score = 55.1 bits (114), Expect(3) = 2e-029
Identities = 21/47 (44%), Positives = 28/47 (59%)
Frame = -3 / +1
Query: 1262 PFMSMGSCGNQPLFKDGKGCGSCYKIRCRKDPSCSGRTETVIITDMN 1122
PF + + LFK G+GCG+CYK+RC CS R T+I TD +
Sbjct: 211 PFKARVGAVSPILFKGGEGCGACYKVRCLDKTICSKRAVTIIATDQS 351
Score = 34.1 bits (68), Expect(3) = 2e-029
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = -3 / +1
Query: 746 SGKTLVANNVIPANWRPNTFYRSFVQYS 663
+ KTL A +VIP+NW P Y S + +S
Sbjct: 721 NNKTLSATDVIPSNWVPKATYTSRLNFS 804
>gb|BT005024.1| Arabidopsis thaliana clone U20717 putative beta-expansin pollen
allergen protein (At2g20750) mRNA, complete cds
Length = 847
Score = 87.2 bits (184), Expect(3) = 2e-029
Identities = 32/77 (41%), Positives = 51/77 (66%)
Frame = -3 / +1
Query: 1100 HFDLSGTAFGRLAKPGLNDKLRHSGIIDIEFTRVPCEFPGLKIGFHVEEYSNPVYFAVLV 921
HFDLSG AFG +A PG N +R+ G+++I + R C++ G I FHV S + ++L+
Sbjct: 385 HFDLSGAAFGHMAIPGHNGVIRNRGLLNILYRRTACKYRGKNIAFHVNAGSTDYWLSLLI 564
Query: 920 EYEDGDGDVVQVDLMES 870
EYEDG+GD+ + + ++
Sbjct: 565 EYEDGEGDIGSMHIRQA 615
Score = 55.1 bits (114), Expect(3) = 2e-029
Identities = 21/47 (44%), Positives = 28/47 (59%)
Frame = -3 / +1
Query: 1262 PFMSMGSCGNQPLFKDGKGCGSCYKIRCRKDPSCSGRTETVIITDMN 1122
PF + + LFK G+GCG+CYK+RC CS R T+I TD +
Sbjct: 211 PFKARVGAVSPILFKGGEGCGACYKVRCLDKTICSKRAVTIIATDQS 351
Score = 34.1 bits (68), Expect(3) = 2e-029
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = -3 / +1
Query: 746 SGKTLVANNVIPANWRPNTFYRSFVQYS 663
+ KTL A +VIP+NW P Y S + +S
Sbjct: 721 NNKTLSATDVIPSNWVPKATYTSRLNFS 804
>gb|U95967.1|ATU95967 Arabidopsis thaliana beta-expansin mRNA, partial cds
Length = 1037
Score = 87.2 bits (184), Expect(3) = 4e-029
Identities = 32/77 (41%), Positives = 51/77 (66%)
Frame = -3 / +3
Query: 1100 HFDLSGTAFGRLAKPGLNDKLRHSGIIDIEFTRVPCEFPGLKIGFHVEEYSNPVYFAVLV 921
HFDLSG AFG +A PG N +R+ G+++I + R C++ G I FHV S + ++L+
Sbjct: 351 HFDLSGAAFGHMAIPGHNGVIRNRGLLNILYRRTACKYRGKNIAFHVNAGSTDYWLSLLI 530
Query: 920 EYEDGDGDVVQVDLMES 870
EYEDG+GD+ + + ++
Sbjct: 531 EYEDGEGDIGSMHIRQA 581
Score = 55.1 bits (114), Expect(3) = 4e-029
Identities = 21/47 (44%), Positives = 28/47 (59%)
Frame = -3 / +3
Query: 1262 PFMSMGSCGNQPLFKDGKGCGSCYKIRCRKDPSCSGRTETVIITDMN 1122
PF + + LFK G+GCG+CYK+RC CS R T+I TD +
Sbjct: 177 PFKARVGAVSPILFKGGEGCGACYKVRCLDKTICSKRAVTIIATDQS 317
Score = 34.1 bits (68), Expect(3) = 4e-029
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = -3 / +3
Query: 746 SGKTLVANNVIPANWRPNTFYRSFVQYS 663
+ KTL A +VIP+NW P Y S + +S
Sbjct: 687 NNKTLSATDVIPSNWVPKATYTSRLNFS 770
>gb|BT003932.1| Arabidopsis thaliana clone RAFL15-12-F16 (R20717) putative
beta-expansin pollen allergen protein (At2g20750) mRNA,
complete cds
Length = 1124
Score = 87.2 bits (184), Expect(3) = 4e-029
Identities = 32/77 (41%), Positives = 51/77 (66%)
Frame = -3 / +3
Query: 1100 HFDLSGTAFGRLAKPGLNDKLRHSGIIDIEFTRVPCEFPGLKIGFHVEEYSNPVYFAVLV 921
HFDLSG AFG +A PG N +R+ G+++I + R C++ G I FHV S + ++L+
Sbjct: 447 HFDLSGAAFGHMAIPGHNGVIRNRGLLNILYRRTACKYRGKNIAFHVNAGSTDYWLSLLI 626
Query: 920 EYEDGDGDVVQVDLMES 870
EYEDG+GD+ + + ++
Sbjct: 627 EYEDGEGDIGSMHIRQA 677
Score = 55.1 bits (114), Expect(3) = 4e-029
Identities = 21/47 (44%), Positives = 28/47 (59%)
Frame = -3 / +3
Query: 1262 PFMSMGSCGNQPLFKDGKGCGSCYKIRCRKDPSCSGRTETVIITDMN 1122
PF + + LFK G+GCG+CYK+RC CS R T+I TD +
Sbjct: 273 PFKARVGAVSPILFKGGEGCGACYKVRCLDKTICSKRAVTIIATDQS 413
Score = 34.1 bits (68), Expect(3) = 4e-029
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = -3 / +3
Query: 746 SGKTLVANNVIPANWRPNTFYRSFVQYS 663
+ KTL A +VIP+NW P Y S + +S
Sbjct: 783 NNKTLSATDVIPSNWVPKATYTSRLNFS 866
>gb|AY084478.1| Arabidopsis thaliana clone 109135 mRNA, complete sequence
Length = 1137
Score = 87.2 bits (184), Expect(3) = 5e-029
Identities = 32/77 (41%), Positives = 51/77 (66%)
Frame = -3 / +2
Query: 1100 HFDLSGTAFGRLAKPGLNDKLRHSGIIDIEFTRVPCEFPGLKIGFHVEEYSNPVYFAVLV 921
HFDLSG AFG +A PG N +R+ G+++I + R C++ G I FHV S + ++L+
Sbjct: 449 HFDLSGAAFGHMAIPGHNGVIRNRGLLNILYRRTACKYRGKNIAFHVNAGSTDYWLSLLI 628
Query: 920 EYEDGDGDVVQVDLMES 870
EYEDG+GD+ + + ++
Sbjct: 629 EYEDGEGDIGSMHIRQA 679
Score = 55.1 bits (114), Expect(3) = 5e-029
Identities = 21/47 (44%), Positives = 28/47 (59%)
Frame = -3 / +2
Query: 1262 PFMSMGSCGNQPLFKDGKGCGSCYKIRCRKDPSCSGRTETVIITDMN 1122
PF + + LFK G+GCG+CYK+RC CS R T+I TD +
Sbjct: 275 PFKARVGAVSPILFKGGEGCGACYKVRCLDKTICSKRAVTIIATDQS 415
Score = 34.1 bits (68), Expect(3) = 5e-029
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = -3 / +2
Query: 746 SGKTLVANNVIPANWRPNTFYRSFVQYS 663
+ KTL A +VIP+NW P Y S + +S
Sbjct: 785 NNKTLSATDVIPSNWVPKATYTSRLNFS 868
>ref|NM_127640.1| Arabidopsis thaliana ATEXPB1 (ARABIDOPSIS THALIANA EXPANSIN B1)
AT2G20750 (ATEXPB1) mRNA, complete cds
Length = 1137
Score = 87.2 bits (184), Expect(3) = 5e-029
Identities = 32/77 (41%), Positives = 51/77 (66%)
Frame = -3 / +2
Query: 1100 HFDLSGTAFGRLAKPGLNDKLRHSGIIDIEFTRVPCEFPGLKIGFHVEEYSNPVYFAVLV 921
HFDLSG AFG +A PG N +R+ G+++I + R C++ G I FHV S + ++L+
Sbjct: 449 HFDLSGAAFGHMAIPGHNGVIRNRGLLNILYRRTACKYRGKNIAFHVNAGSTDYWLSLLI 628
Query: 920 EYEDGDGDVVQVDLMES 870
EYEDG+GD+ + + ++
Sbjct: 629 EYEDGEGDIGSMHIRQA 679
Score = 55.1 bits (114), Expect(3) = 5e-029
Identities = 21/47 (44%), Positives = 28/47 (59%)
Frame = -3 / +2
Query: 1262 PFMSMGSCGNQPLFKDGKGCGSCYKIRCRKDPSCSGRTETVIITDMN 1122
PF + + LFK G+GCG+CYK+RC CS R T+I TD +
Sbjct: 275 PFKARVGAVSPILFKGGEGCGACYKVRCLDKTICSKRAVTIIATDQS 415
Score = 34.1 bits (68), Expect(3) = 5e-029
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = -3 / +2
Query: 746 SGKTLVANNVIPANWRPNTFYRSFVQYS 663
+ KTL A +VIP+NW P Y S + +S
Sbjct: 785 NNKTLSATDVIPSNWVPKATYTSRLNFS 868
>gb|AY619565.1| Arabidopsis thaliana beta-expansin 6 (EXPB6) gene, complete cds
Length = 2504
Score = 47.3 bits (97), Expect(6) = 3e-027
Identities = 17/33 (51%), Positives = 24/33 (72%)
Frame = -3 / +2
Query: 1100 HFDLSGTAFGRLAKPGLNDKLRHSGIIDIEFTR 1002
HFDLSG A G LA+PG D+LR +G++ + + R
Sbjct: 1871 HFDLSGKAMGALARPGQGDRLRSAGVLRVYYIR 1969
Score = 44.6 bits (91), Expect(6) = 3e-027
Identities = 18/30 (60%), Positives = 21/30 (70%)
Frame = -3 / +1
Query: 749 ESGKTLVANNVIPANWRPNTFYRSFVQYS* 660
ES +VA NVIPANW+PN YRS V + *
Sbjct: 2413 ESHNVVVAYNVIPANWKPNETYRSVVNFK* 2502
Score = 42.8 bits (87), Expect(6) = 3e-027
Identities = 15/41 (36%), Positives = 25/41 (60%)
Frame = -3 / +1
Query: 1001 VPCEFPGLKIGFHVEEYSNPVYFAVLVEYEDGDGDVVQVDL 879
V C + I F ++ +NP Y + +VEYE+GDGD+ ++
Sbjct: 2179 VECLYRRTNIAFRMDPGANPYYISFVVEYENGDGDLAYTEI 2301
Score = 34.1 bits (68), Expect(6) = 3e-027
Identities = 12/42 (28%), Positives = 24/42 (57%)
Frame = -3 / +1
Query: 854 PPTGRWTPMRESWGSVWRMDTNHRMQPPFSIRIRNESGKTLV 729
P G + PM+E +VW++++ + PF+IR+ + +V
Sbjct: 2305 PAGGTFIPMQEMRSAVWKVNSGSPLTGPFNIRLTSAESHNVV 2430
Score = 32.7 bits (65), Expect(6) = 3e-027
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = -3 / +2
Query: 1262 PFMSMGSCGNQPLFKDGKGCGSCYKI 1185
P M S G +F +G GCG+C+++
Sbjct: 1322 PLYGMVSAGGPSVFNNGIGCGTCFQV 1399
Score = 29.9 bits (59), Expect(6) = 3e-027
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = -3 / +2
Query: 1193 YKIRCRKDPSCSGRTETVIITD 1128
Y+I C P+CS R TV ITD
Sbjct: 1769 YQILCNGHPACSRRPITVTITD 1834
>gb|CF652567.1|CF652567 63-L020523-066-003-M15-SP6P MPIZ-ADIS-066 Arabidopsis thaliana cDNA
clone MPIZp2001M153Q 5-PRIME, mRNA sequence
Length = 816
Score = 84.9 bits (179), Expect(2) = 2e-026
Identities = 33/77 (42%), Positives = 50/77 (64%)
Frame = -3 / +2
Query: 1100 HFDLSGTAFGRLAKPGLNDKLRHSGIIDIEFTRVPCEFPGLKIGFHVEEYSNPVYFAVLV 921
HFDLSG FGRLA G + LR+ G+I + + R C++ G I FHV E S + ++LV
Sbjct: 449 HFDLSGAVFGRLAIAGESGPLRNRGLIPVIYRRTACKYRGKNIAFHVNEGSTDFWLSLLV 628
Query: 920 EYEDGDGDVVQVDLMES 870
E+EDG+GD+ + + ++
Sbjct: 629 EFEDGEGDIGSMHIRQA 679
Score = 57.9 bits (120), Expect(2) = 2e-026
Identities = 22/36 (61%), Positives = 26/36 (72%)
Frame = -3 / +2
Query: 1235 NQPLFKDGKGCGSCYKIRCRKDPSCSGRTETVIITD 1128
N LFK+G+GCG+CYK+RC CS R TVIITD
Sbjct: 311 NPILFKNGEGCGACYKVRCLDKSICSRRAVTVIITD 418
>gb|AE005173.1| Arabidopsis thaliana chromosome 1, bottom arm complete sequence
Length = 14668883
Score = 49.6 bits (102), Expect(4) = 2e-026
Identities = 18/28 (64%), Positives = 23/28 (82%)
Frame = -3 / +2
Query: 749 ESGKTLVANNVIPANWRPNTFYRSFVQY 666
ESGKT+VA+NVIPANW+P Y+S V +
Sbjct: 8669627 ESGKTVVASNVIPANWQPGAIYKSNVNF 8669710
Score = 46.0 bits (94), Expect(4) = 2e-026
Identities = 18/45 (40%), Positives = 30/45 (66%)
Frame = -3 / +2
Query: 1004 RVPCEFPGLKIGFHVEEYSNPVYFAVLVEYEDGDGDVVQVDLMES 870
RV C + G + F V++ SN FAVLV Y +GDG++ +++L ++
Sbjct: 8669384 RVECNYIGKTVTFQVDKGSNANSFAVLVAYVNGDGEIGRIELKQA 8669518
Score = 41.8 bits (85), Expect(4) = 2e-026
Identities = 11/29 (37%), Positives = 21/29 (72%)
Frame = -3 / +2
Query: 842 RWTPMRESWGSVWRMDTNHRMQPPFSIRI 756
+W M +SWG+VW++D + ++ P S+R+
Sbjct: 8669531 KWLSMSQSWGAVWKLDVSSPLRAPLSLRV 8669617
Score = 39.6 bits (80), Expect(4) = 2e-026
Identities = 16/33 (48%), Positives = 23/33 (69%)
Frame = -3 / +2
Query: 1100 HFDLSGTAFGRLAKPGLNDKLRHSGIIDIEFTR 1002
HFDLSGTAFG +A G + +LR+ G + I + +
Sbjct: 8669171 HFDLSGTAFGAMAISGQDSQLRNVGELQILYKK 8669269
>emb|BX827016.1|CNS0A45X Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTFB87ZG06 of Flowers and buds of strain col-0 of
Arabidopsis thaliana (thale cress)
Length = 1257
Score = 84.9 bits (179), Expect(4) = 6e-025
Identities = 33/77 (42%), Positives = 50/77 (64%)
Frame = -3 / +2
Query: 1100 HFDLSGTAFGRLAKPGLNDKLRHSGIIDIEFTRVPCEFPGLKIGFHVEEYSNPVYFAVLV 921
HFDLSG FGRLA G + LR+ G+I + + R C++ G I FHV E S + ++LV
Sbjct: 449 HFDLSGAVFGRLAIAGESGPLRNRGLIPVIYRRTACKYRGKNIAFHVNEGSTDFWLSMLV 628
Query: 920 EYEDGDGDVVQVDLMES 870
E+EDG+GD+ + + ++
Sbjct: 629 EFEDGEGDIGSMHIRQA 679
Score = 36.8 bits (74), Expect(4) = 6e-025
Identities = 14/24 (58%), Positives = 16/24 (66%)
Frame = -3 / +2
Query: 1199 SCYKIRCRKDPSCSGRTETVIITD 1128
+CYK+RC CS R TVIITD
Sbjct: 347 TCYKVRCLDKSICSRRAVTVIITD 418
Score = 36.3 bits (73), Expect(4) = 6e-025
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = -3 / +2
Query: 746 SGKTLVANNVIPANWRPNTFYRSFVQYS 663
+GKTL A +V+P NW P Y S + +S
Sbjct: 785 AGKTLSATDVVPRNWAPKATYSSRLNFS 868
Score = 24.0 bits (46), Expect(4) = 6e-025
Identities = 8/12 (66%), Positives = 10/12 (83%)
Frame = -3 / +3
Query: 1235 NQPLFKDGKGCG 1200
N LFK+G+GCG
Sbjct: 312 NPILFKNGEGCG 347
>ref|NM_115921.1| Arabidopsis thaliana ATEXPB5 (ARABIDOPSIS THALIANA EXPANSIN B5)
AT3G60570 (ATEXPB5) mRNA, complete cds
Length = 759
Score = 51.5 bits (106), Expect(5) = 7e-025
Identities = 16/30 (53%), Positives = 23/30 (76%)
Frame = -3 / +1
Query: 1268 QYPFMSMGSCGNQPLFKDGKGCGSCYKIRC 1179
++P+ M S G LFKDGKGCG+CY+++C
Sbjct: 187 KHPYRCMVSAGGPSLFKDGKGCGACYRLKC 276
Score = 41.4 bits (84), Expect(5) = 7e-025
Identities = 17/25 (68%), Positives = 19/25 (76%)
Frame = -3 / +1
Query: 1100 HFDLSGTAFGRLAKPGLNDKLRHSG 1026
HFDLSG AFG LAK G D+LR+ G
Sbjct: 355 HFDLSGKAFGALAKRGKGDQLRNLG 429
Score = 34.5 bits (69), Expect(5) = 7e-025
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = -3 / +1
Query: 746 SGKTLVANNVIPANWRPNTFYRSFVQY 666
SGK ++A VIP W P Y S V +
Sbjct: 655 SGKKIIAKGVIPEKWSPGAIYHSKVNF 735
Score = 31.3 bits (62), Expect(5) = 7e-025
Identities = 10/32 (31%), Positives = 20/32 (62%)
Frame = -3 / +1
Query: 974 IGFHVEEYSNPVYFAVLVEYEDGDGDVVQVDL 879
I HV+ +NP Y + V++ +GDG+ +++
Sbjct: 445 IAIHVDAGANPYYMSFAVKFANGDGNFACIEV 540
Score = 30.4 bits (60), Expect(5) = 7e-025
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = -3 / +1
Query: 854 PPTGRWTPMRESWGSVWRMDTNHRMQPPFSIRI 756
P G++ M E +VWR+ ++ PF+IR+
Sbjct: 544 PAGGQYMKMEEMRSAVWRLSPGVPLKGPFNIRL 642
>emb|AL049803.1|F26K10 Arabidopsis thaliana clone F26K10, *** SEQUENCING IN PROGRESS ***
Length = 49311
Score = 57.9 bits (120), Expect(5) = 1e-022
Identities = 22/36 (61%), Positives = 26/36 (72%)
Frame = -3 / -3
Query: 1235 NQPLFKDGKGCGSCYKIRCRKDPSCSGRTETVIITD 1128
N LFK+G+GCG+CYK+RC CS R TVIITD
Sbjct: 28387 NPILFKNGEGCGACYKVRCLDKSICSRRAVTVIITD 28280
Score = 48.3 bits (99), Expect(5) = 1e-022
Identities = 17/37 (45%), Positives = 25/37 (67%)
Frame = -3 / -2
Query: 1004 RVPCEFPGLKIGFHVEEYSNPVYFAVLVEYEDGDGDV 894
R C++ G I FHV E S + ++LVE+EDG+GD+
Sbjct: 27845 RTACKYRGKNIAFHVNEGSTDFWLSLLVEFEDGEGDI 27735
Score = 41.4 bits (84), Expect(5) = 1e-022
Identities = 17/33 (51%), Positives = 22/33 (66%)
Frame = -3 / -3
Query: 1100 HFDLSGTAFGRLAKPGLNDKLRHSGIIDIEFTR 1002
HFDLSG FGRLA G + LR+ G+I + + R
Sbjct: 28249 HFDLSGAVFGRLAIAGESGPLRNRGLIPVIYRR 28151
Score = 36.3 bits (73), Expect(5) = 1e-022
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = -3 / -3
Query: 746 SGKTLVANNVIPANWRPNTFYRSFVQYS 663
+GKTL A +V+P NW P Y S + +S
Sbjct: 27304 AGKTLSATDVVPRNWAPKATYSSRLNFS 27221
Score = 29.5 bits (58), Expect(5) = 1e-022
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = -3 / -3
Query: 215 HHHLHSDR*LIEKYIVMYKRHVSF 144
HHHL D * ++K +V +H+ F
Sbjct: 9202 HHHLTKDN*CVDK*VVNSSKHILF 9131
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 2,387,485,677
Number of Sequences: 1013581
Number of extensions: 29420218
Number of successful extensions: 177133
Number of sequences better than 1.0e-020: 25
length of database: 302,980,290
effective HSP length: 58
effective length of database: 244,192,592
effective search space used: 115747288608
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)