TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2192679.2.1
(1274 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
dbj|AK117537.1| Arabidopsis thaliana At2g24490 mRNA for put... 138 3e-040
ref|NM_128010.2| Arabidopsis thaliana nucleic acid binding ... 138 3e-040
gb|AY088525.1| Arabidopsis thaliana clone 7536 mRNA, comple... 138 3e-040
emb|BX820518.1|CNS0A84V Arabidopsis thaliana Full-length cD... 138 3e-040
gb|BT005433.1| Arabidopsis thaliana clone U50553 putative r... 138 3e-040
gb|DQ284987.1| Arabidopsis thaliana DNA replication protein... 138 3e-040
dbj|AK117794.1| Arabidopsis thaliana At3g02920 mRNA for put... 116 2e-031
gb|AY084806.1| Arabidopsis thaliana clone 118359 mRNA, comp... 116 3e-031
ref|NM_111162.2| Arabidopsis thaliana nucleic acid binding ... 116 3e-031
gb|AU238378.1|AU238378 AU238378 RAFL17 Arabidopsis thaliana... 110 2e-027
gb|AU238647.1|AU238647 AU238647 RAFL17 Arabidopsis thaliana... 116 1e-024
>dbj|AK117537.1| Arabidopsis thaliana At2g24490 mRNA for putative replication
protein A1, complete cds, clone: RAFL17-19-E13
Length = 1159
Score = 138 bits (295), Expect(4) = 3e-040
Identities = 53/166 (31%), Positives = 92/166 (55%)
Frame = +2 / +1
Query: 320 RTTDVTFTLDDGTGRLDFIRWVNDASDSFETAAIQNGMYIAVIGSLKGLQERKRATAFSI 499
+ T+V FTLDDGTGR+D RWV++ D+ E ++++G Y+ + G LK Q + + FS+
Sbjct: 328 KVTEVRFTLDDGTGRIDCKRWVSETFDAREMESVRDGTYVRLSGHLKTFQGKTQLLVFSV 507
Query: 500 RPITDFNEVTLHFIQCVRMHIENIELKAGSPARISSSMGVSFSNGFXXXXXXXXXXXXXA 679
RPI DFNEVT H+I+C+ + +N E + ++ S+ +F G +
Sbjct: 508 RPIMDFNEVTFHYIECIHFYSQNSESQRQQVGDVTQSVNTTFQGGSNTNQATLLNPVVSS 687
Query: 680 PVTSGSSDTDLHTQVLNFFNEPANLESEHGVHVDEVLKRFKLLPKK 817
G+ +L +L++ +PA + G+H+DE+ ++ K+ K
Sbjct: 688 QNNDGNGRKNLDDMILDYLKQPACTARQQGIHIDEIAQQLKIPKNK 825
Score = 33.1 bits (66), Expect(4) = 3e-040
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +2 / +1
Query: 806 LPKKQITDAIDYNMDSGRLYSTIDEFHYK 892
+PK ++ + G +YSTIDE+H+K
Sbjct: 811 IPKNKLEGVVQSLEGDGLIYSTIDEYHFK 897
Score = 27.2 bits (53), Expect(4) = 3e-040
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = +2 / +1
Query: 257 IVNGVEMANIRLVGMVNAKVE 319
++NG+ + N+ LVG+V K E
Sbjct: 262 VINGISLTNVSLVGLVCDKDE 324
Score = 26.3 bits (51), Expect(4) = 3e-040
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = +2 / +1
Query: 137 AAADSTTPSKMRGASSTMPLTVKQVVDAQQSGTGDKG 247
A S++ +K R +P+TVKQ+ + QS G
Sbjct: 148 AYESSSSTAKNRDFQGLVPVTVKQITECFQSSGEKSG 258
>ref|NM_128010.2| Arabidopsis thaliana nucleic acid binding AT2G24490 mRNA, complete
cds
Length = 1159
Score = 138 bits (295), Expect(4) = 3e-040
Identities = 53/166 (31%), Positives = 92/166 (55%)
Frame = +2 / +1
Query: 320 RTTDVTFTLDDGTGRLDFIRWVNDASDSFETAAIQNGMYIAVIGSLKGLQERKRATAFSI 499
+ T+V FTLDDGTGR+D RWV++ D+ E ++++G Y+ + G LK Q + + FS+
Sbjct: 328 KVTEVRFTLDDGTGRIDCKRWVSETFDAREMESVRDGTYVRLSGHLKTFQGKTQLLVFSV 507
Query: 500 RPITDFNEVTLHFIQCVRMHIENIELKAGSPARISSSMGVSFSNGFXXXXXXXXXXXXXA 679
RPI DFNEVT H+I+C+ + +N E + ++ S+ +F G +
Sbjct: 508 RPIMDFNEVTFHYIECIHFYSQNSESQRQQVGDVTQSVNTTFQGGSNTNQATLLNPVVSS 687
Query: 680 PVTSGSSDTDLHTQVLNFFNEPANLESEHGVHVDEVLKRFKLLPKK 817
G+ +L +L++ +PA + G+H+DE+ ++ K+ K
Sbjct: 688 QNNDGNGRKNLDDMILDYLKQPACTARQQGIHIDEIAQQLKIPKNK 825
Score = 33.1 bits (66), Expect(4) = 3e-040
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +2 / +1
Query: 806 LPKKQITDAIDYNMDSGRLYSTIDEFHYK 892
+PK ++ + G +YSTIDE+H+K
Sbjct: 811 IPKNKLEGVVQSLEGDGLIYSTIDEYHFK 897
Score = 27.2 bits (53), Expect(4) = 3e-040
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = +2 / +1
Query: 257 IVNGVEMANIRLVGMVNAKVE 319
++NG+ + N+ LVG+V K E
Sbjct: 262 VINGISLTNVSLVGLVCDKDE 324
Score = 26.3 bits (51), Expect(4) = 3e-040
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = +2 / +1
Query: 137 AAADSTTPSKMRGASSTMPLTVKQVVDAQQSGTGDKG 247
A S++ +K R +P+TVKQ+ + QS G
Sbjct: 148 AYESSSSTAKNRDFQGLVPVTVKQITECFQSSGEKSG 258
>gb|AY088525.1| Arabidopsis thaliana clone 7536 mRNA, complete sequence
Length = 1154
Score = 138 bits (295), Expect(4) = 3e-040
Identities = 53/166 (31%), Positives = 92/166 (55%)
Frame = +2 / +1
Query: 320 RTTDVTFTLDDGTGRLDFIRWVNDASDSFETAAIQNGMYIAVIGSLKGLQERKRATAFSI 499
+ T+V FTLDDGTGR+D RWV++ D+ E ++++G Y+ + G LK Q + + FS+
Sbjct: 328 KVTEVRFTLDDGTGRIDCKRWVSETFDAREMESVRDGTYVRLSGHLKTFQGKTQLLVFSV 507
Query: 500 RPITDFNEVTLHFIQCVRMHIENIELKAGSPARISSSMGVSFSNGFXXXXXXXXXXXXXA 679
RPI DFNEVT H+I+C+ + +N E + ++ S+ +F G +
Sbjct: 508 RPIMDFNEVTFHYIECIHFYSQNSESQRQQVGDVTQSVNTTFQGGSNTNQATLLNPVVSS 687
Query: 680 PVTSGSSDTDLHTQVLNFFNEPANLESEHGVHVDEVLKRFKLLPKK 817
G+ +L +L++ +PA + G+H+DE+ ++ K+ K
Sbjct: 688 QNNDGNGRKNLDDMILDYLKQPACTARQQGIHIDEIAQQLKIPKNK 825
Score = 33.1 bits (66), Expect(4) = 3e-040
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +2 / +1
Query: 806 LPKKQITDAIDYNMDSGRLYSTIDEFHYK 892
+PK ++ + G +YSTIDE+H+K
Sbjct: 811 IPKNKLEGVVQSLEGDGLIYSTIDEYHFK 897
Score = 27.2 bits (53), Expect(4) = 3e-040
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = +2 / +1
Query: 257 IVNGVEMANIRLVGMVNAKVE 319
++NG+ + N+ LVG+V K E
Sbjct: 262 VINGISLTNVSLVGLVCDKDE 324
Score = 26.3 bits (51), Expect(4) = 3e-040
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = +2 / +1
Query: 137 AAADSTTPSKMRGASSTMPLTVKQVVDAQQSGTGDKG 247
A S++ +K R +P+TVKQ+ + QS G
Sbjct: 148 AYESSSSTAKNRDFQGLVPVTVKQITECFQSSGEKSG 258
>emb|BX820518.1|CNS0A84V Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTPGH43ZD06 of Hormone Treated Callus of strain col-0
of Arabidopsis thaliana (thale cress)
Length = 1113
Score = 138 bits (295), Expect(4) = 3e-040
Identities = 53/166 (31%), Positives = 92/166 (55%)
Frame = +2 / +2
Query: 320 RTTDVTFTLDDGTGRLDFIRWVNDASDSFETAAIQNGMYIAVIGSLKGLQERKRATAFSI 499
+ T+V FTLDDGTGR+D RWV++ D+ E ++++G Y+ + G LK Q + + FS+
Sbjct: 317 KVTEVRFTLDDGTGRIDCKRWVSETFDAREMESVRDGTYVRLSGHLKTFQGKTQLLVFSV 496
Query: 500 RPITDFNEVTLHFIQCVRMHIENIELKAGSPARISSSMGVSFSNGFXXXXXXXXXXXXXA 679
RPI DFNEVT H+I+C+ + +N E + ++ S+ +F G +
Sbjct: 497 RPIMDFNEVTFHYIECIHFYSQNSESQRQQVGDVTQSVNTTFQGGSNTNQATLLNPVVSS 676
Query: 680 PVTSGSSDTDLHTQVLNFFNEPANLESEHGVHVDEVLKRFKLLPKK 817
G+ +L +L++ +PA + G+H+DE+ ++ K+ K
Sbjct: 677 QNNDGNGRKNLDDMILDYLKQPACTARQQGIHIDEIAQQLKIPKNK 814
Score = 33.1 bits (66), Expect(4) = 3e-040
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +2 / +2
Query: 806 LPKKQITDAIDYNMDSGRLYSTIDEFHYK 892
+PK ++ + G +YSTIDE+H+K
Sbjct: 800 IPKNKLEGVVQSLEGDGLIYSTIDEYHFK 886
Score = 27.2 bits (53), Expect(4) = 3e-040
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = +2 / +2
Query: 257 IVNGVEMANIRLVGMVNAKVE 319
++NG+ + N+ LVG+V K E
Sbjct: 251 VINGISLTNVSLVGLVCDKDE 313
Score = 26.3 bits (51), Expect(4) = 3e-040
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = +2 / +2
Query: 137 AAADSTTPSKMRGASSTMPLTVKQVVDAQQSGTGDKG 247
A S++ +K R +P+TVKQ+ + QS G
Sbjct: 137 AYESSSSTAKNRDFQGLVPVTVKQITECFQSSGEKSG 247
>gb|BT005433.1| Arabidopsis thaliana clone U50553 putative replication protein A1
(At2g24490) mRNA, complete cds
Length = 871
Score = 138 bits (295), Expect(4) = 3e-040
Identities = 53/166 (31%), Positives = 92/166 (55%)
Frame = +2 / +1
Query: 320 RTTDVTFTLDDGTGRLDFIRWVNDASDSFETAAIQNGMYIAVIGSLKGLQERKRATAFSI 499
+ T+V FTLDDGTGR+D RWV++ D+ E ++++G Y+ + G LK Q + + FS+
Sbjct: 256 KVTEVRFTLDDGTGRIDCKRWVSETFDAREMESVRDGTYVRLSGHLKTFQGKTQLLVFSV 435
Query: 500 RPITDFNEVTLHFIQCVRMHIENIELKAGSPARISSSMGVSFSNGFXXXXXXXXXXXXXA 679
RPI DFNEVT H+I+C+ + +N E + ++ S+ +F G +
Sbjct: 436 RPIMDFNEVTFHYIECIHFYSQNSESQRQQVGDVTQSVNTTFQGGSNTNQATLLNPVVSS 615
Query: 680 PVTSGSSDTDLHTQVLNFFNEPANLESEHGVHVDEVLKRFKLLPKK 817
G+ +L +L++ +PA + G+H+DE+ ++ K+ K
Sbjct: 616 QNNDGNGRKNLDDMILDYLKQPACTARQQGIHIDEIAQQLKIPKNK 753
Score = 33.1 bits (66), Expect(4) = 3e-040
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +2 / +1
Query: 806 LPKKQITDAIDYNMDSGRLYSTIDEFHYK 892
+PK ++ + G +YSTIDE+H+K
Sbjct: 739 IPKNKLEGVVQSLEGDGLIYSTIDEYHFK 825
Score = 27.2 bits (53), Expect(4) = 3e-040
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = +2 / +1
Query: 257 IVNGVEMANIRLVGMVNAKVE 319
++NG+ + N+ LVG+V K E
Sbjct: 190 VINGISLTNVSLVGLVCDKDE 252
Score = 26.3 bits (51), Expect(4) = 3e-040
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = +2 / +1
Query: 137 AAADSTTPSKMRGASSTMPLTVKQVVDAQQSGTGDKG 247
A S++ +K R +P+TVKQ+ + QS G
Sbjct: 76 AYESSSSTAKNRDFQGLVPVTVKQITECFQSSGEKSG 186
>gb|DQ284987.1| Arabidopsis thaliana DNA replication protein A2 subunit (ROR1)
mRNA, complete cds
Length = 840
Score = 138 bits (295), Expect(4) = 3e-040
Identities = 53/166 (31%), Positives = 92/166 (55%)
Frame = +2 / +1
Query: 320 RTTDVTFTLDDGTGRLDFIRWVNDASDSFETAAIQNGMYIAVIGSLKGLQERKRATAFSI 499
+ T+V FTLDDGTGR+D RWV++ D+ E ++++G Y+ + G LK Q + + FS+
Sbjct: 256 KVTEVRFTLDDGTGRIDCKRWVSETFDAREMESVRDGTYVRLSGHLKTFQGKTQLLVFSV 435
Query: 500 RPITDFNEVTLHFIQCVRMHIENIELKAGSPARISSSMGVSFSNGFXXXXXXXXXXXXXA 679
RPI DFNEVT H+I+C+ + +N E + ++ S+ +F G +
Sbjct: 436 RPIMDFNEVTFHYIECIHFYSQNSESQRQQVGDVTQSVNTTFQGGSNTNQATLLNPVVSS 615
Query: 680 PVTSGSSDTDLHTQVLNFFNEPANLESEHGVHVDEVLKRFKLLPKK 817
G+ +L +L++ +PA + G+H+DE+ ++ K+ K
Sbjct: 616 QNNDGNGRKNLDDMILDYLKQPACTARQQGIHIDEIAQQLKIPKNK 753
Score = 33.1 bits (66), Expect(4) = 3e-040
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +2 / +1
Query: 806 LPKKQITDAIDYNMDSGRLYSTIDEFHYK 892
+PK ++ + G +YSTIDE+H+K
Sbjct: 739 IPKNKLEGVVQSLEGDGLIYSTIDEYHFK 825
Score = 27.2 bits (53), Expect(4) = 3e-040
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = +2 / +1
Query: 257 IVNGVEMANIRLVGMVNAKVE 319
++NG+ + N+ LVG+V K E
Sbjct: 190 VINGISLTNVSLVGLVCDKDE 252
Score = 26.3 bits (51), Expect(4) = 3e-040
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = +2 / +1
Query: 137 AAADSTTPSKMRGASSTMPLTVKQVVDAQQSGTGDKG 247
A S++ +K R +P+TVKQ+ + QS G
Sbjct: 76 AYESSSSTAKNRDFQGLVPVTVKQITECFQSSGEKSG 186
>dbj|AK117794.1| Arabidopsis thaliana At3g02920 mRNA for putative replication factor
A, complete cds, clone: RAFL17-48-I03
Length = 1064
Score = 116 bits (248), Expect(3) = 2e-031
Identities = 43/112 (38%), Positives = 72/112 (64%)
Frame = +2 / +1
Query: 254 FIVNGVEMANIRLVGMVNAKVERTTDVTFTLDDGTGRLDFIRWVNDASDSFETAAIQNGM 433
F ++GV++ + +VG ++ R T V F +DDGTG +D +RW + ++ E A++ GM
Sbjct: 235 FSIDGVDIKTVVIVGRISRMENRITQVDFVVDDGTGWVDCVRWCHARQETEEMEAVKLGM 414
Query: 434 YIAVIGSLKGLQERKRATAFSIRPITDFNEVTLHFIQCVRMHIENIELKAGS 589
Y+ + G LK Q ++ FS+RP+TDFNE+ HF +C+ +H+ N +L+ GS
Sbjct: 415 YVRLHGHLKIFQGKRSVNVFSVRPVTDFNEIVHHFTECMYVHMYNTKLRGGS 570
Score = 33.6 bits (67), Expect(3) = 2e-031
Identities = 11/28 (39%), Positives = 19/28 (67%)
Frame = +2 / +1
Query: 722 VLNFFNEPANLESEHGVHVDEVLKRFKL 805
VLN+ N+P ++ SE GVH D + + ++
Sbjct: 709 VLNYLNQPMHIVSEAGVHCDIIARELRI 792
Score = 32.7 bits (65), Expect(3) = 2e-031
Identities = 12/39 (30%), Positives = 25/39 (64%)
Frame = +2 / +1
Query: 782 EVLKRFKLLPKKQITDAIDYNMDSGRLYSTIDEFHYKAT 898
+++ R +P Q+ +A++ + G +YST+DE +K+T
Sbjct: 766 DIIARELRIPLLQVKEALEQLSNDGCIYSTLDETCFKST 882
>gb|AY084806.1| Arabidopsis thaliana clone 118359 mRNA, complete sequence
Length = 1168
Score = 116 bits (248), Expect(3) = 3e-031
Identities = 43/112 (38%), Positives = 72/112 (64%)
Frame = +2 / +3
Query: 254 FIVNGVEMANIRLVGMVNAKVERTTDVTFTLDDGTGRLDFIRWVNDASDSFETAAIQNGM 433
F ++GV++ + +VG ++ R T V F +DDGTG +D +RW + ++ E A++ GM
Sbjct: 339 FSIDGVDIKTVVIVGRISRMENRITQVDFVVDDGTGWVDCVRWCHARQETEEMEAVKLGM 518
Query: 434 YIAVIGSLKGLQERKRATAFSIRPITDFNEVTLHFIQCVRMHIENIELKAGS 589
Y+ + G LK Q ++ FS+RP+TDFNE+ HF +C+ +H+ N +L+ GS
Sbjct: 519 YVRLHGHLKIFQGKRSVNVFSVRPVTDFNEIVHHFTECMYVHMYNTKLRGGS 674
Score = 33.6 bits (67), Expect(3) = 3e-031
Identities = 11/28 (39%), Positives = 19/28 (67%)
Frame = +2 / +3
Query: 722 VLNFFNEPANLESEHGVHVDEVLKRFKL 805
VLN+ N+P ++ SE GVH D + + ++
Sbjct: 813 VLNYLNQPMHIVSEAGVHCDIIARELRI 896
Score = 32.7 bits (65), Expect(3) = 3e-031
Identities = 12/39 (30%), Positives = 25/39 (64%)
Frame = +2 / +3
Query: 782 EVLKRFKLLPKKQITDAIDYNMDSGRLYSTIDEFHYKAT 898
+++ R +P Q+ +A++ + G +YST+DE +K+T
Sbjct: 870 DIIARELRIPLLQVKEALEQLSNDGCIYSTLDETCFKST 986
>ref|NM_111162.2| Arabidopsis thaliana nucleic acid binding AT3G02920 mRNA, complete
cds
Length = 1169
Score = 116 bits (248), Expect(3) = 3e-031
Identities = 43/112 (38%), Positives = 72/112 (64%)
Frame = +2 / +3
Query: 254 FIVNGVEMANIRLVGMVNAKVERTTDVTFTLDDGTGRLDFIRWVNDASDSFETAAIQNGM 433
F ++GV++ + +VG ++ R T V F +DDGTG +D +RW + ++ E A++ GM
Sbjct: 339 FSIDGVDIKTVVIVGRISRMENRITQVDFVVDDGTGWVDCVRWCHARQETEEMEAVKLGM 518
Query: 434 YIAVIGSLKGLQERKRATAFSIRPITDFNEVTLHFIQCVRMHIENIELKAGS 589
Y+ + G LK Q ++ FS+RP+TDFNE+ HF +C+ +H+ N +L+ GS
Sbjct: 519 YVRLHGHLKIFQGKRSVNVFSVRPVTDFNEIVHHFTECMYVHMYNTKLRGGS 674
Score = 33.6 bits (67), Expect(3) = 3e-031
Identities = 11/28 (39%), Positives = 19/28 (67%)
Frame = +2 / +3
Query: 722 VLNFFNEPANLESEHGVHVDEVLKRFKL 805
VLN+ N+P ++ SE GVH D + + ++
Sbjct: 813 VLNYLNQPMHIVSEAGVHCDIIARELRI 896
Score = 32.7 bits (65), Expect(3) = 3e-031
Identities = 12/39 (30%), Positives = 25/39 (64%)
Frame = +2 / +3
Query: 782 EVLKRFKLLPKKQITDAIDYNMDSGRLYSTIDEFHYKAT 898
+++ R +P Q+ +A++ + G +YST+DE +K+T
Sbjct: 870 DIIARELRIPLLQVKEALEQLSNDGCIYSTLDETCFKST 986
>gb|AU238378.1|AU238378 AU238378 RAFL17 Arabidopsis thaliana cDNA clone RAFL17-19-E13 5',
mRNA sequence
Length = 643
Score = 110 bits (234), Expect(3) = 2e-027
Identities = 41/102 (40%), Positives = 66/102 (64%)
Frame = +2 / +2
Query: 320 RTTDVTFTLDDGTGRLDFIRWVNDASDSFETAAIQNGMYIAVIGSLKGLQERKRATAFSI 499
+ T+V FTLDDGTGR+D RWV++ D+ E ++++G Y+ + G LK Q + + FS+
Sbjct: 329 KVTEVRFTLDDGTGRIDCKRWVSETFDAREMESVRDGTYVRLSGHLKTFQGKTQLLVFSV 508
Query: 500 RPITDFNEVTLHFIQCVRMHIENIELKAGSPARISSSMGVSF 625
RPI DFNEVT H+I+C+ + +N E + ++ S+ +F
Sbjct: 509 RPIMDFNEVTFHYIECIHFYSQNSESQRQQVGDVTQSVNTTF 634
Score = 27.2 bits (53), Expect(3) = 2e-027
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = +2 / +2
Query: 257 IVNGVEMANIRLVGMVNAKVE 319
++NG+ + N+ LVG+V K E
Sbjct: 263 VINGISLTNVSLVGLVCDKDE 325
Score = 26.3 bits (51), Expect(3) = 2e-027
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = +2 / +2
Query: 137 AAADSTTPSKMRGASSTMPLTVKQVVDAQQSGTGDKG 247
A S++ +K R +P+TVKQ+ + QS G
Sbjct: 149 AYESSSSTAKNRDFQGLVPVTVKQITECFQSSGEKSG 259
>gb|AU238647.1|AU238647 AU238647 RAFL17 Arabidopsis thaliana cDNA clone RAFL17-48-I03 5',
mRNA sequence
Length = 620
Score = 116 bits (248), Expect = 1e-024
Identities = 43/112 (38%), Positives = 72/112 (64%)
Frame = +2 / +2
Query: 254 FIVNGVEMANIRLVGMVNAKVERTTDVTFTLDDGTGRLDFIRWVNDASDSFETAAIQNGM 433
F ++GV++ + +VG ++ R T V F +DDGTG +D +RW + ++ E A++ GM
Sbjct: 236 FSIDGVDIKTVVIVGRISRMENRITQVDFVVDDGTGWVDCVRWCHARQETEEMEAVKLGM 415
Query: 434 YIAVIGSLKGLQERKRATAFSIRPITDFNEVTLHFIQCVRMHIENIELKAGS 589
Y+ + G LK Q ++ FS+RP+TDFNE+ HF +C+ +H+ N +L+ GS
Sbjct: 416 YVRLHGHLKIFQGKRSVNVFSVRPVTDFNEIVHHFTECMYVHMYNTKLRGGS 571
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 2,320,180,210
Number of Sequences: 1013581
Number of extensions: 30220026
Number of successful extensions: 141373
Number of sequences better than 1.0e-020: 13
length of database: 302,980,290
effective HSP length: 57
effective length of database: 245,206,173
effective search space used: 89990665491
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)