TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2192420.2.1
(738 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AF048706.1|AF048706 Arabidopsis thaliana CAD ATPase (AAA... 309 7e-083
gb|AF358779.1|AF358779 Arabidopsis thaliana katanin (KTN1) ... 309 7e-083
gb|AY059919.1| Arabidopsis thaliana CAD ATPase (AAA1) (F5I6... 309 7e-083
dbj|AB044785.1| Arabidopsis thaliana ftr mRNA for katanin, ... 309 7e-083
gb|BT000149.1| Arabidopsis thaliana CAD ATPase (AAA1) (At1g... 309 7e-083
ref|NM_106684.2| Arabidopsis thaliana ERH3 (ECTOPIC ROOT HA... 309 7e-083
gb|AE005173.1| Arabidopsis thaliana chromosome 1, bottom ar... 202 1e-067
gb|AC018848.6|AC018848 Arabidopsis thaliana chromosome 1 BA... 202 1e-067
gb|AF359248.1|AF359248 Arabidopsis thaliana katanin 1 (KTN1... 202 1e-067
emb|BX813765.1|CNS0ADG9 Arabidopsis thaliana Full-length cD... 142 4e-066
ref|NC_003070.5| Arabidopsis thaliana chromosome 1, complet... 202 1e-050
gb|BP609505.1|BP609505 BP609505 RAFL16 Arabidopsis thaliana... 198 2e-049
gb|AI996420.1|AI996420 701665317 A. thaliana, Columbia Col-... 185 1e-045
gb|BP611018.1|BP611018 BP611018 RAFL16 Arabidopsis thaliana... 181 2e-044
gb|AV565264.1|AV565264 AV565264 Arabidopsis thaliana green ... 169 1e-040
gb|BP590290.1|BP590290 BP590290 RAFL15 Arabidopsis thaliana... 164 3e-039
gb|BP587701.1|BP587701 BP587701 RAFL15 Arabidopsis thaliana... 111 4e-039
gb|BP606058.1|BP606058 BP606058 RAFL16 Arabidopsis thaliana... 157 4e-037
gb|AU227693.1|AU227693 AU227693 RAFL15 Arabidopsis thaliana... 91 6e-037
gb|BP598877.1|BP598877 BP598877 RAFL16 Arabidopsis thaliana... 100 3e-031
gb|AV796219.1|AV796219 AV796219 RAFL9 Arabidopsis thaliana ... 111 9e-028
gb|BP596280.1|BP596280 BP596280 RAFL15 Arabidopsis thaliana... 104 1e-022
gb|BP619228.1|BP619228 BP619228 RAFL16 Arabidopsis thaliana... 101 9e-021
>gb|AF048706.1|AF048706 Arabidopsis thaliana CAD ATPase (AAA1) mRNA, complete cds
Length = 1698
Score = 309 bits (669), Expect = 7e-083
Identities = 129/145 (88%), Positives = 140/145 (96%)
Frame = +1 / +1
Query: 4 SQKIVMVLAATNFPWDIDEALRRRLEKRIYIPLPDFESRKALININLRTVQIAADVNIDE 183
S+KIVMVLAATNFPWDIDEALRRRLEKRIYIPLPDFESRKALININLRTV++A+DVNI++
Sbjct: 1147 SRKIVMVLAATNFPWDIDEALRRRLEKRIYIPLPDFESRKALININLRTVEVASDVNIED 1326
Query: 184 VARRTEGYSGDDLTNVCRDASMNGMRRKIAGKTRDEIKNMSKDEIAKDPVAMCDFVEALV 363
VARRTEGYSGDDLTNVCRDASMNGMRRKIAGKTRDEIKNMSKD+I+ DPVAMCDF EA+
Sbjct: 1327 VARRTEGYSGDDLTNVCRDASMNGMRRKIAGKTRDEIKNMSKDDISNDPVAMCDFEEAIR 1506
Query: 364 KVQKSVSPSDIEKHEKWMAEFGSA* 438
KVQ SVS SDIEKHEKW++EFGSA*
Sbjct: 1507 KVQPSVSSSDIEKHEKWLSEFGSA* 1581
Score = 177 bits (381), Expect = 3e-043
Identities = 89/144 (61%), Positives = 96/144 (66%)
Frame = -2 / -2
Query: 434 ADPNSAIHFSCFSMSEGETLF*TFTRASTKSHMATGSLAISSFDMFLISSRVLPAILRLM 255
ADPNS HFSCFS+SE +TL TF AS+KSH+ATGS ISSFDMF ISS V PAILR +
Sbjct: 1577 ADPNSESHFSCFSISEEDTLGCTFLMASSKSHIATGSFDISSFDMFFISSLVFPAILRRI 1398
Query: 254 PFIEASRQTFVRSSPL*PSVLRATSSMLTSAAI*TVLRLMLISAFLLXXXXXXXXXXXXX 75
PFI+AS T VRSSPL PSVLRATSSMLTS A TVLRL+LI A L
Sbjct: 1397 PFIDASLHTLVRSSPLYPSVLRATSSMLTSLATSTVLRLILIRALRLSKSGSGIYIRFSN 1218
Query: 74 XXXXXXXXSHGKFVAARTITIFWL 3
SHGK VAA TITI L
Sbjct: 1217 LLLRASSMSHGKLVAANTITILRL 1146
Score = 148 bits (317), Expect = 2e-034
Identities = 62/141 (43%), Positives = 90/141 (63%)
Frame = -1 / -1
Query: 432 RPKLSHPLLMLLYV*RRDTLLNLHQSLHKVAHGHRVLGYLVL*HVLDLVAGLACYLAPHA 253
R KL PLL+ L + R T L+ L ++ H H ++ Y+V HVL L++ YL PH
Sbjct: 1575 RSKLREPLLVFLDIRGRHTRLHFPNGLFEITHCHWII*YIVFRHVLYLISRFPRYLTPHP 1396
Query: 252 IH*GIAANVCQIISTIAFCPPSNLVDVNICGYLNCSKINVDKCLSTFKIWKWNINTLLQP 73
+H* + A+V QI+ST+ F P ++ +VNI +LNCS+I++DK L+TFKIWKW+I T QP
Sbjct: 1395 VH*CVPAHVSQIVSTVPFRSPGHIFNVNITRHLNCSQIDIDKSLTTFKIWKWDIYTFFQP 1216
Query: 72 SPQCLINIPWKICSSQNHNNF 10
P+ I +P ++ S Q H F
Sbjct: 1215 PPESFIYVPREVGSCQYHYYF 1153
>gb|AF358779.1|AF358779 Arabidopsis thaliana katanin (KTN1) mRNA, complete cds
Length = 1707
Score = 309 bits (669), Expect = 7e-083
Identities = 129/145 (88%), Positives = 140/145 (96%)
Frame = +1 / +2
Query: 4 SQKIVMVLAATNFPWDIDEALRRRLEKRIYIPLPDFESRKALININLRTVQIAADVNIDE 183
S+KIVMVLAATNFPWDIDEALRRRLEKRIYIPLPDFESRKALININLRTV++A+DVNI++
Sbjct: 1160 SRKIVMVLAATNFPWDIDEALRRRLEKRIYIPLPDFESRKALININLRTVEVASDVNIED 1339
Query: 184 VARRTEGYSGDDLTNVCRDASMNGMRRKIAGKTRDEIKNMSKDEIAKDPVAMCDFVEALV 363
VARRTEGYSGDDLTNVCRDASMNGMRRKIAGKTRDEIKNMSKD+I+ DPVAMCDF EA+
Sbjct: 1340 VARRTEGYSGDDLTNVCRDASMNGMRRKIAGKTRDEIKNMSKDDISNDPVAMCDFEEAIR 1519
Query: 364 KVQKSVSPSDIEKHEKWMAEFGSA* 438
KVQ SVS SDIEKHEKW++EFGSA*
Sbjct: 1520 KVQPSVSSSDIEKHEKWLSEFGSA* 1594
Score = 177 bits (381), Expect = 3e-043
Identities = 89/144 (61%), Positives = 96/144 (66%)
Frame = -2 / -1
Query: 434 ADPNSAIHFSCFSMSEGETLF*TFTRASTKSHMATGSLAISSFDMFLISSRVLPAILRLM 255
ADPNS HFSCFS+SE +TL TF AS+KSH+ATGS ISSFDMF ISS V PAILR +
Sbjct: 1590 ADPNSESHFSCFSISEEDTLGCTFLMASSKSHIATGSFDISSFDMFFISSLVFPAILRRI 1411
Query: 254 PFIEASRQTFVRSSPL*PSVLRATSSMLTSAAI*TVLRLMLISAFLLXXXXXXXXXXXXX 75
PFI+AS T VRSSPL PSVLRATSSMLTS A TVLRL+LI A L
Sbjct: 1410 PFIDASLHTLVRSSPLYPSVLRATSSMLTSLATSTVLRLILIRALRLSKSGSGIYIRFSN 1231
Query: 74 XXXXXXXXSHGKFVAARTITIFWL 3
SHGK VAA TITI L
Sbjct: 1230 LLLRASSMSHGKLVAANTITILRL 1159
Score = 148 bits (317), Expect = 2e-034
Identities = 62/141 (43%), Positives = 90/141 (63%)
Frame = -1 / -3
Query: 432 RPKLSHPLLMLLYV*RRDTLLNLHQSLHKVAHGHRVLGYLVL*HVLDLVAGLACYLAPHA 253
R KL PLL+ L + R T L+ L ++ H H ++ Y+V HVL L++ YL PH
Sbjct: 1588 RSKLREPLLVFLDIRGRHTRLHFPNGLFEITHCHWII*YIVFRHVLYLISRFPRYLTPHP 1409
Query: 252 IH*GIAANVCQIISTIAFCPPSNLVDVNICGYLNCSKINVDKCLSTFKIWKWNINTLLQP 73
+H* + A+V QI+ST+ F P ++ +VNI +LNCS+I++DK L+TFKIWKW+I T QP
Sbjct: 1408 VH*CVPAHVSQIVSTVPFRSPGHIFNVNITRHLNCSQIDIDKSLTTFKIWKWDIYTFFQP 1229
Query: 72 SPQCLINIPWKICSSQNHNNF 10
P+ I +P ++ S Q H F
Sbjct: 1228 PPESFIYVPREVGSCQYHYYF 1166
>gb|AY059919.1| Arabidopsis thaliana CAD ATPase (AAA1) (F5I6.10) mRNA, complete cds
Length = 1885
Score = 309 bits (669), Expect = 7e-083
Identities = 129/145 (88%), Positives = 140/145 (96%)
Frame = +1 / +3
Query: 4 SQKIVMVLAATNFPWDIDEALRRRLEKRIYIPLPDFESRKALININLRTVQIAADVNIDE 183
S+KIVMVLAATNFPWDIDEALRRRLEKRIYIPLPDFESRKALININLRTV++A+DVNI++
Sbjct: 1293 SRKIVMVLAATNFPWDIDEALRRRLEKRIYIPLPDFESRKALININLRTVEVASDVNIED 1472
Query: 184 VARRTEGYSGDDLTNVCRDASMNGMRRKIAGKTRDEIKNMSKDEIAKDPVAMCDFVEALV 363
VARRTEGYSGDDLTNVCRDASMNGMRRKIAGKTRDEIKNMSKD+I+ DPVAMCDF EA+
Sbjct: 1473 VARRTEGYSGDDLTNVCRDASMNGMRRKIAGKTRDEIKNMSKDDISNDPVAMCDFEEAIR 1652
Query: 364 KVQKSVSPSDIEKHEKWMAEFGSA* 438
KVQ SVS SDIEKHEKW++EFGSA*
Sbjct: 1653 KVQPSVSSSDIEKHEKWLSEFGSA* 1727
Score = 177 bits (381), Expect = 3e-043
Identities = 89/144 (61%), Positives = 96/144 (66%)
Frame = -2 / -1
Query: 434 ADPNSAIHFSCFSMSEGETLF*TFTRASTKSHMATGSLAISSFDMFLISSRVLPAILRLM 255
ADPNS HFSCFS+SE +TL TF AS+KSH+ATGS ISSFDMF ISS V PAILR +
Sbjct: 1723 ADPNSESHFSCFSISEEDTLGCTFLMASSKSHIATGSFDISSFDMFFISSLVFPAILRRI 1544
Query: 254 PFIEASRQTFVRSSPL*PSVLRATSSMLTSAAI*TVLRLMLISAFLLXXXXXXXXXXXXX 75
PFI+AS T VRSSPL PSVLRATSSMLTS A TVLRL+LI A L
Sbjct: 1543 PFIDASLHTLVRSSPLYPSVLRATSSMLTSLATSTVLRLILIRALRLSKSGSGIYIRFSN 1364
Query: 74 XXXXXXXXSHGKFVAARTITIFWL 3
SHGK VAA TITI L
Sbjct: 1363 LLLRASSMSHGKLVAANTITILRL 1292
Score = 148 bits (317), Expect = 2e-034
Identities = 62/141 (43%), Positives = 90/141 (63%)
Frame = -1 / -3
Query: 432 RPKLSHPLLMLLYV*RRDTLLNLHQSLHKVAHGHRVLGYLVL*HVLDLVAGLACYLAPHA 253
R KL PLL+ L + R T L+ L ++ H H ++ Y+V HVL L++ YL PH
Sbjct: 1721 RSKLREPLLVFLDIRGRHTRLHFPNGLFEITHCHWII*YIVFRHVLYLISRFPRYLTPHP 1542
Query: 252 IH*GIAANVCQIISTIAFCPPSNLVDVNICGYLNCSKINVDKCLSTFKIWKWNINTLLQP 73
+H* + A+V QI+ST+ F P ++ +VNI +LNCS+I++DK L+TFKIWKW+I T QP
Sbjct: 1541 VH*CVPAHVSQIVSTVPFRSPGHIFNVNITRHLNCSQIDIDKSLTTFKIWKWDIYTFFQP 1362
Query: 72 SPQCLINIPWKICSSQNHNNF 10
P+ I +P ++ S Q H F
Sbjct: 1361 PPESFIYVPREVGSCQYHYYF 1299
>dbj|AB044785.1| Arabidopsis thaliana ftr mRNA for katanin, complete cds
Length = 1904
Score = 309 bits (669), Expect = 7e-083
Identities = 129/145 (88%), Positives = 140/145 (96%)
Frame = +1 / +1
Query: 4 SQKIVMVLAATNFPWDIDEALRRRLEKRIYIPLPDFESRKALININLRTVQIAADVNIDE 183
S+KIVMVLAATNFPWDIDEALRRRLEKRIYIPLPDFESRKALININLRTV++A+DVNI++
Sbjct: 1291 SRKIVMVLAATNFPWDIDEALRRRLEKRIYIPLPDFESRKALININLRTVEVASDVNIED 1470
Query: 184 VARRTEGYSGDDLTNVCRDASMNGMRRKIAGKTRDEIKNMSKDEIAKDPVAMCDFVEALV 363
VARRTEGYSGDDLTNVCRDASMNGMRRKIAGKTRDEIKNMSKD+I+ DPVAMCDF EA+
Sbjct: 1471 VARRTEGYSGDDLTNVCRDASMNGMRRKIAGKTRDEIKNMSKDDISNDPVAMCDFEEAIR 1650
Query: 364 KVQKSVSPSDIEKHEKWMAEFGSA* 438
KVQ SVS SDIEKHEKW++EFGSA*
Sbjct: 1651 KVQPSVSSSDIEKHEKWLSEFGSA* 1725
Score = 177 bits (381), Expect = 3e-043
Identities = 89/144 (61%), Positives = 96/144 (66%)
Frame = -2 / -1
Query: 434 ADPNSAIHFSCFSMSEGETLF*TFTRASTKSHMATGSLAISSFDMFLISSRVLPAILRLM 255
ADPNS HFSCFS+SE +TL TF AS+KSH+ATGS ISSFDMF ISS V PAILR +
Sbjct: 1721 ADPNSESHFSCFSISEEDTLGCTFLMASSKSHIATGSFDISSFDMFFISSLVFPAILRRI 1542
Query: 254 PFIEASRQTFVRSSPL*PSVLRATSSMLTSAAI*TVLRLMLISAFLLXXXXXXXXXXXXX 75
PFI+AS T VRSSPL PSVLRATSSMLTS A TVLRL+LI A L
Sbjct: 1541 PFIDASLHTLVRSSPLYPSVLRATSSMLTSLATSTVLRLILIRALRLSKSGSGIYIRFSN 1362
Query: 74 XXXXXXXXSHGKFVAARTITIFWL 3
SHGK VAA TITI L
Sbjct: 1361 LLLRASSMSHGKLVAANTITILRL 1290
Score = 153 bits (328), Expect = 7e-036
Identities = 64/141 (45%), Positives = 90/141 (63%)
Frame = -1 / -3
Query: 432 RPKLSHPLLMLLYV*RRDTLLNLHQSLHKVAHGHRVLGYLVL*HVLDLVAGLACYLAPHA 253
R KL PLL+ L + R T L+ L ++ H H ++ Y+V HVL L+ YL PH
Sbjct: 1719 RSKLREPLLVFLDIRGRHTRLHFPNGLFEITHCHWII*YIVFRHVLYLIPRFPSYLTPHP 1540
Query: 252 IH*GIAANVCQIISTIAFCPPSNLVDVNICGYLNCSKINVDKCLSTFKIWKWNINTLLQP 73
+H* I A+V QI+STI F P ++ +VNI +L+CS+I++DK L+TFKIWKW+I T QP
Sbjct: 1539 VH*CIPAHVSQIVSTIPFRSPGHIFNVNITRHLDCSQIDIDKSLTTFKIWKWDIYTFFQP 1360
Query: 72 SPQCLINIPWKICSSQNHNNF 10
P+ I +PW++ S Q H F
Sbjct: 1359 PPESFIYVPWEVGSCQYHYYF 1297
>gb|BT000149.1| Arabidopsis thaliana CAD ATPase (AAA1) (At1g80350) mRNA, complete cds
Length = 1627
Score = 309 bits (669), Expect = 7e-083
Identities = 129/145 (88%), Positives = 140/145 (96%)
Frame = +1 / +1
Query: 4 SQKIVMVLAATNFPWDIDEALRRRLEKRIYIPLPDFESRKALININLRTVQIAADVNIDE 183
S+KIVMVLAATNFPWDIDEALRRRLEKRIYIPLPDFESRKALININLRTV++A+DVNI++
Sbjct: 1138 SRKIVMVLAATNFPWDIDEALRRRLEKRIYIPLPDFESRKALININLRTVEVASDVNIED 1317
Query: 184 VARRTEGYSGDDLTNVCRDASMNGMRRKIAGKTRDEIKNMSKDEIAKDPVAMCDFVEALV 363
VARRTEGYSGDDLTNVCRDASMNGMRRKIAGKTRDEIKNMSKD+I+ DPVAMCDF EA+
Sbjct: 1318 VARRTEGYSGDDLTNVCRDASMNGMRRKIAGKTRDEIKNMSKDDISNDPVAMCDFEEAIR 1497
Query: 364 KVQKSVSPSDIEKHEKWMAEFGSA* 438
KVQ SVS SDIEKHEKW++EFGSA*
Sbjct: 1498 KVQPSVSSSDIEKHEKWLSEFGSA* 1572
Score = 177 bits (381), Expect = 3e-043
Identities = 89/144 (61%), Positives = 96/144 (66%)
Frame = -2 / -3
Query: 434 ADPNSAIHFSCFSMSEGETLF*TFTRASTKSHMATGSLAISSFDMFLISSRVLPAILRLM 255
ADPNS HFSCFS+SE +TL TF AS+KSH+ATGS ISSFDMF ISS V PAILR +
Sbjct: 1568 ADPNSESHFSCFSISEEDTLGCTFLMASSKSHIATGSFDISSFDMFFISSLVFPAILRRI 1389
Query: 254 PFIEASRQTFVRSSPL*PSVLRATSSMLTSAAI*TVLRLMLISAFLLXXXXXXXXXXXXX 75
PFI+AS T VRSSPL PSVLRATSSMLTS A TVLRL+LI A L
Sbjct: 1388 PFIDASLHTLVRSSPLYPSVLRATSSMLTSLATSTVLRLILIRALRLSKSGSGIYIRFSN 1209
Query: 74 XXXXXXXXSHGKFVAARTITIFWL 3
SHGK VAA TITI L
Sbjct: 1208 LLLRASSMSHGKLVAANTITILRL 1137
Score = 148 bits (317), Expect = 2e-034
Identities = 62/141 (43%), Positives = 90/141 (63%)
Frame = -1 / -2
Query: 432 RPKLSHPLLMLLYV*RRDTLLNLHQSLHKVAHGHRVLGYLVL*HVLDLVAGLACYLAPHA 253
R KL PLL+ L + R T L+ L ++ H H ++ Y+V HVL L++ YL PH
Sbjct: 1566 RSKLREPLLVFLDIRGRHTRLHFPNGLFEITHCHWII*YIVFRHVLYLISRFPRYLTPHP 1387
Query: 252 IH*GIAANVCQIISTIAFCPPSNLVDVNICGYLNCSKINVDKCLSTFKIWKWNINTLLQP 73
+H* + A+V QI+ST+ F P ++ +VNI +LNCS+I++DK L+TFKIWKW+I T QP
Sbjct: 1386 VH*CVPAHVSQIVSTVPFRSPGHIFNVNITRHLNCSQIDIDKSLTTFKIWKWDIYTFFQP 1207
Query: 72 SPQCLINIPWKICSSQNHNNF 10
P+ I +P ++ S Q H F
Sbjct: 1206 PPESFIYVPREVGSCQYHYYF 1144
>ref|NM_106684.2| Arabidopsis thaliana ERH3 (ECTOPIC ROOT HAIR 3); ATP binding /
nucleoside-triphosphatase/ nucleotide binding AT1G80350
(ERH3) mRNA, complete cds
Length = 1902
Score = 309 bits (669), Expect = 7e-083
Identities = 129/145 (88%), Positives = 140/145 (96%)
Frame = +1 / +3
Query: 4 SQKIVMVLAATNFPWDIDEALRRRLEKRIYIPLPDFESRKALININLRTVQIAADVNIDE 183
S+KIVMVLAATNFPWDIDEALRRRLEKRIYIPLPDFESRKALININLRTV++A+DVNI++
Sbjct: 1293 SRKIVMVLAATNFPWDIDEALRRRLEKRIYIPLPDFESRKALININLRTVEVASDVNIED 1472
Query: 184 VARRTEGYSGDDLTNVCRDASMNGMRRKIAGKTRDEIKNMSKDEIAKDPVAMCDFVEALV 363
VARRTEGYSGDDLTNVCRDASMNGMRRKIAGKTRDEIKNMSKD+I+ DPVAMCDF EA+
Sbjct: 1473 VARRTEGYSGDDLTNVCRDASMNGMRRKIAGKTRDEIKNMSKDDISNDPVAMCDFEEAIR 1652
Query: 364 KVQKSVSPSDIEKHEKWMAEFGSA* 438
KVQ SVS SDIEKHEKW++EFGSA*
Sbjct: 1653 KVQPSVSSSDIEKHEKWLSEFGSA* 1727
Score = 177 bits (381), Expect = 3e-043
Identities = 89/144 (61%), Positives = 96/144 (66%)
Frame = -2 / -3
Query: 434 ADPNSAIHFSCFSMSEGETLF*TFTRASTKSHMATGSLAISSFDMFLISSRVLPAILRLM 255
ADPNS HFSCFS+SE +TL TF AS+KSH+ATGS ISSFDMF ISS V PAILR +
Sbjct: 1723 ADPNSESHFSCFSISEEDTLGCTFLMASSKSHIATGSFDISSFDMFFISSLVFPAILRRI 1544
Query: 254 PFIEASRQTFVRSSPL*PSVLRATSSMLTSAAI*TVLRLMLISAFLLXXXXXXXXXXXXX 75
PFI+AS T VRSSPL PSVLRATSSMLTS A TVLRL+LI A L
Sbjct: 1543 PFIDASLHTLVRSSPLYPSVLRATSSMLTSLATSTVLRLILIRALRLSKSGSGIYIRFSN 1364
Query: 74 XXXXXXXXSHGKFVAARTITIFWL 3
SHGK VAA TITI L
Sbjct: 1363 LLLRASSMSHGKLVAANTITILRL 1292
Score = 148 bits (317), Expect = 2e-034
Identities = 62/141 (43%), Positives = 90/141 (63%)
Frame = -1 / -2
Query: 432 RPKLSHPLLMLLYV*RRDTLLNLHQSLHKVAHGHRVLGYLVL*HVLDLVAGLACYLAPHA 253
R KL PLL+ L + R T L+ L ++ H H ++ Y+V HVL L++ YL PH
Sbjct: 1721 RSKLREPLLVFLDIRGRHTRLHFPNGLFEITHCHWII*YIVFRHVLYLISRFPRYLTPHP 1542
Query: 252 IH*GIAANVCQIISTIAFCPPSNLVDVNICGYLNCSKINVDKCLSTFKIWKWNINTLLQP 73
+H* + A+V QI+ST+ F P ++ +VNI +LNCS+I++DK L+TFKIWKW+I T QP
Sbjct: 1541 VH*CVPAHVSQIVSTVPFRSPGHIFNVNITRHLNCSQIDIDKSLTTFKIWKWDIYTFFQP 1362
Query: 72 SPQCLINIPWKICSSQNHNNF 10
P+ I +P ++ S Q H F
Sbjct: 1361 PPESFIYVPREVGSCQYHYYF 1299
>gb|AE005173.1| Arabidopsis thaliana chromosome 1, bottom arm complete sequence
Length = 14668883
Score = 202 bits (435), Expect(3) = 1e-067
Identities = 83/101 (82%), Positives = 94/101 (93%)
Frame = +1 / -3
Query: 136 INLRTVQIAADVNIDEVARRTEGYSGDDLTNVCRDASMNGMRRKIAGKTRDEIKNMSKDE 315
+N+ T Q+A+DVNI++VARRTEGYSGDDLTNVCRDASMNGMRRKIAGKTRDEIKNMSKD+
Sbjct: 14447013 MNIVTFQVASDVNIEDVARRTEGYSGDDLTNVCRDASMNGMRRKIAGKTRDEIKNMSKDD 14446834
Query: 316 IAKDPVAMCDFVEALVKVQKSVSPSDIEKHEKWMAEFGSA* 438
I+ DPVAMCDF EA+ KVQ SVS SDIEKHEKW++EFGSA*
Sbjct: 14446833 ISNDPVAMCDFEEAIRKVQPSVSSSDIEKHEKWLSEFGSA* 14446711
Score = 148 bits (317), Expect(3) = 6e-048
Identities = 70/96 (72%), Positives = 76/96 (79%)
Frame = -2 / +2
Query: 434 ADPNSAIHFSCFSMSEGETLF*TFTRASTKSHMATGSLAISSFDMFLISSRVLPAILRLM 255
ADPNS HFSCFS+SE +TL TF AS+KSH+ATGS ISSFDMF ISS V PAILR +
Sbjct: 14446715 ADPNSESHFSCFSISEEDTLGCTFLMASSKSHIATGSFDISSFDMFFISSLVFPAILRRI 14446894
Query: 254 PFIEASRQTFVRSSPL*PSVLRATSSMLTSAAI*TV 147
PFI+AS T VRSSPL PSVLRATSSMLTS A * V
Sbjct: 14446895 PFIDASLHTLVRSSPLYPSVLRATSSMLTSLAT*KV 14447002
Score = 57.9 bits (120), Expect(3) = 6e-048
Identities = 20/30 (66%), Positives = 25/30 (83%)
Frame = -1 / +3
Query: 156 LNCSKINVDKCLSTFKIWKWNINTLLQPSP 67
LNCS+I++DK L+TFKIWKW+I T QP P
Sbjct: 14447082 LNCSQIDIDKSLTTFKIWKWDIYTFFQPPP 14447171
Score = 52.4 bits (108), Expect(3) = 1e-067
Identities = 21/22 (95%), Positives = 22/22 (100%)
Frame = +1 / -3
Query: 4 SQKIVMVLAATNFPWDIDEALR 69
S+KIVMVLAATNFPWDIDEALR
Sbjct: 14447319 SRKIVMVLAATNFPWDIDEALR 14447254
Score = 43.7 bits (89), Expect(3) = 1e-067
Identities = 19/30 (63%), Positives = 22/30 (73%)
Frame = +2 / -2
Query: 68 GEGWRSVFIFHFQILKVERHLSTLILEQFR 157
G GW++V+I HFQILKV R LS I EQ R
Sbjct: 14447170 GGGWKNVYISHFQILKVVRLLSISI*EQLR 14447081
Score = 25.8 bits (50), Expect(3) = 6e-048
Identities = 11/15 (73%), Positives = 11/15 (73%)
Frame = -2 / +2
Query: 47 HGKFVAARTITIFWL 3
HGK VAA TITI L
Sbjct: 14447276 HGKLVAANTITILRL 14447320
>gb|AC018848.6|AC018848 Arabidopsis thaliana chromosome 1 BAC F5I6 genomic sequence, complete
sequence
Length = 132990
Score = 202 bits (435), Expect(3) = 1e-067
Identities = 83/101 (82%), Positives = 94/101 (93%)
Frame = +1 / -1
Query: 136 INLRTVQIAADVNIDEVARRTEGYSGDDLTNVCRDASMNGMRRKIAGKTRDEIKNMSKDE 315
+N+ T Q+A+DVNI++VARRTEGYSGDDLTNVCRDASMNGMRRKIAGKTRDEIKNMSKD+
Sbjct: 33321 MNIVTFQVASDVNIEDVARRTEGYSGDDLTNVCRDASMNGMRRKIAGKTRDEIKNMSKDD 33142
Query: 316 IAKDPVAMCDFVEALVKVQKSVSPSDIEKHEKWMAEFGSA* 438
I+ DPVAMCDF EA+ KVQ SVS SDIEKHEKW++EFGSA*
Sbjct: 33141 ISNDPVAMCDFEEAIRKVQPSVSSSDIEKHEKWLSEFGSA* 33019
Score = 148 bits (317), Expect(3) = 6e-048
Identities = 70/96 (72%), Positives = 76/96 (79%)
Frame = -2 / +2
Query: 434 ADPNSAIHFSCFSMSEGETLF*TFTRASTKSHMATGSLAISSFDMFLISSRVLPAILRLM 255
ADPNS HFSCFS+SE +TL TF AS+KSH+ATGS ISSFDMF ISS V PAILR +
Sbjct: 33023 ADPNSESHFSCFSISEEDTLGCTFLMASSKSHIATGSFDISSFDMFFISSLVFPAILRRI 33202
Query: 254 PFIEASRQTFVRSSPL*PSVLRATSSMLTSAAI*TV 147
PFI+AS T VRSSPL PSVLRATSSMLTS A * V
Sbjct: 33203 PFIDASLHTLVRSSPLYPSVLRATSSMLTSLAT*KV 33310
Score = 57.9 bits (120), Expect(3) = 6e-048
Identities = 20/30 (66%), Positives = 25/30 (83%)
Frame = -1 / +3
Query: 156 LNCSKINVDKCLSTFKIWKWNINTLLQPSP 67
LNCS+I++DK L+TFKIWKW+I T QP P
Sbjct: 33390 LNCSQIDIDKSLTTFKIWKWDIYTFFQPPP 33479
Score = 52.4 bits (108), Expect(3) = 1e-067
Identities = 21/22 (95%), Positives = 22/22 (100%)
Frame = +1 / -1
Query: 4 SQKIVMVLAATNFPWDIDEALR 69
S+KIVMVLAATNFPWDIDEALR
Sbjct: 33627 SRKIVMVLAATNFPWDIDEALR 33562
Score = 43.7 bits (89), Expect(3) = 1e-067
Identities = 19/30 (63%), Positives = 22/30 (73%)
Frame = +2 / -3
Query: 68 GEGWRSVFIFHFQILKVERHLSTLILEQFR 157
G GW++V+I HFQILKV R LS I EQ R
Sbjct: 33478 GGGWKNVYISHFQILKVVRLLSISI*EQLR 33389
Score = 25.8 bits (50), Expect(3) = 6e-048
Identities = 11/15 (73%), Positives = 11/15 (73%)
Frame = -2 / +2
Query: 47 HGKFVAARTITIFWL 3
HGK VAA TITI L
Sbjct: 33584 HGKLVAANTITILRL 33628
>gb|AF359248.1|AF359248 Arabidopsis thaliana katanin 1 (KTN1) gene, complete cds
Length = 4600
Score = 202 bits (435), Expect(3) = 1e-067
Identities = 83/101 (82%), Positives = 94/101 (93%)
Frame = +1 / +2
Query: 136 INLRTVQIAADVNIDEVARRTEGYSGDDLTNVCRDASMNGMRRKIAGKTRDEIKNMSKDE 315
+N+ T Q+A+DVNI++VARRTEGYSGDDLTNVCRDASMNGMRRKIAGKTRDEIKNMSKD+
Sbjct: 3260 MNIVTFQVASDVNIEDVARRTEGYSGDDLTNVCRDASMNGMRRKIAGKTRDEIKNMSKDD 3439
Query: 316 IAKDPVAMCDFVEALVKVQKSVSPSDIEKHEKWMAEFGSA* 438
I+ DPVAMCDF EA+ KVQ SVS SDIEKHEKW++EFGSA*
Sbjct: 3440 ISNDPVAMCDFEEAIRKVQPSVSSSDIEKHEKWLSEFGSA* 3562
Score = 148 bits (317), Expect(3) = 6e-048
Identities = 70/96 (72%), Positives = 76/96 (79%)
Frame = -2 / -2
Query: 434 ADPNSAIHFSCFSMSEGETLF*TFTRASTKSHMATGSLAISSFDMFLISSRVLPAILRLM 255
ADPNS HFSCFS+SE +TL TF AS+KSH+ATGS ISSFDMF ISS V PAILR +
Sbjct: 3558 ADPNSESHFSCFSISEEDTLGCTFLMASSKSHIATGSFDISSFDMFFISSLVFPAILRRI 3379
Query: 254 PFIEASRQTFVRSSPL*PSVLRATSSMLTSAAI*TV 147
PFI+AS T VRSSPL PSVLRATSSMLTS A * V
Sbjct: 3378 PFIDASLHTLVRSSPLYPSVLRATSSMLTSLAT*KV 3271
Score = 57.9 bits (120), Expect(3) = 6e-048
Identities = 20/30 (66%), Positives = 25/30 (83%)
Frame = -1 / -3
Query: 156 LNCSKINVDKCLSTFKIWKWNINTLLQPSP 67
LNCS+I++DK L+TFKIWKW+I T QP P
Sbjct: 3191 LNCSQIDIDKSLTTFKIWKWDIYTFFQPPP 3102
Score = 52.4 bits (108), Expect(3) = 1e-067
Identities = 21/22 (95%), Positives = 22/22 (100%)
Frame = +1 / +2
Query: 4 SQKIVMVLAATNFPWDIDEALR 69
S+KIVMVLAATNFPWDIDEALR
Sbjct: 2954 SRKIVMVLAATNFPWDIDEALR 3019
Score = 43.7 bits (89), Expect(3) = 1e-067
Identities = 19/30 (63%), Positives = 22/30 (73%)
Frame = +2 / +1
Query: 68 GEGWRSVFIFHFQILKVERHLSTLILEQFR 157
G GW++V+I HFQILKV R LS I EQ R
Sbjct: 3103 GGGWKNVYISHFQILKVVRLLSISI*EQLR 3192
Score = 25.8 bits (50), Expect(3) = 6e-048
Identities = 11/15 (73%), Positives = 11/15 (73%)
Frame = -2 / -2
Query: 47 HGKFVAARTITIFWL 3
HGK VAA TITI L
Sbjct: 2997 HGKLVAANTITILRL 2953
>emb|BX813765.1|CNS0ADG9 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTFB38ZH06 of Flowers and buds of strain col-0 of
Arabidopsis thaliana (thale cress)
Length = 1821
Score = 142 bits (305), Expect(2) = 4e-066
Identities = 59/69 (85%), Positives = 64/69 (92%)
Frame = +1 / +1
Query: 232 CRDASMNGMRRKIAGKTRDEIKNMSKDEIAKDPVAMCDFVEALVKVQKSVSPSDIEKHEK 411
CRDASMNGMRRKIAGKTRDEIKNMSKD+I+ DPVAMCDF EA+ KVQ SVS SDIEKHEK
Sbjct: 1498 CRDASMNGMRRKIAGKTRDEIKNMSKDDISNDPVAMCDFEEAIRKVQPSVSSSDIEKHEK 1677
Query: 412 WMAEFGSA* 438
W++EFGSA*
Sbjct: 1678 WISEFGSA* 1704
Score = 131 bits (281), Expect(2) = 4e-066
Identities = 54/60 (90%), Positives = 60/60 (100%)
Frame = +1 / +2
Query: 4 SQKIVMVLAATNFPWDIDEALRRRLEKRIYIPLPDFESRKALININLRTVQIAADVNIDE 183
S+KIVMVLAATNFPWDIDEALRRRLEKRIYIPLPDFESRKALININLRTV++A+DVNI++
Sbjct: 1277 SRKIVMVLAATNFPWDIDEALRRRLEKRIYIPLPDFESRKALININLRTVEVASDVNIED 1456
Score = 108 bits (231), Expect(2) = 1e-039
Identities = 48/66 (72%), Positives = 54/66 (81%)
Frame = -2 / -2
Query: 434 ADPNSAIHFSCFSMSEGETLF*TFTRASTKSHMATGSLAISSFDMFLISSRVLPAILRLM 255
ADPNS IHFSCFS+SE +TL TF AS+KSH+ATGS ISSFDMF ISS V PAILR +
Sbjct: 1700 ADPNSEIHFSCFSISEEDTLGCTFLMASSKSHIATGSFDISSFDMFFISSLVFPAILRRI 1521
Query: 254 PFIEAS 237
PFI+AS
Sbjct: 1520 PFIDAS 1503
Score = 77.1 bits (162), Expect(2) = 1e-039
Identities = 29/58 (50%), Positives = 41/58 (70%)
Frame = -1 / -3
Query: 183 LVDVNICGYLNCSKINVDKCLSTFKIWKWNINTLLQPSPQCLINIPWKICSSQNHNNF 10
+ +VNI +LNCS+I++DK L+TFKIWKW+I T QP P+ I +P ++ S Q H F
Sbjct: 1456 IFNVNITRHLNCSQIDIDKSLTTFKIWKWDIYTFFQPPPESFIYVPREVGSCQYHYYF 1283
>ref|NC_003070.5| Arabidopsis thaliana chromosome 1, complete sequence
Length = 30432563
Score = 202 bits (435), Expect = 1e-050
Identities = 83/101 (82%), Positives = 94/101 (93%)
Frame = +1 / -3
Query: 136 INLRTVQIAADVNIDEVARRTEGYSGDDLTNVCRDASMNGMRRKIAGKTRDEIKNMSKDE 315
+N+ T Q+A+DVNI++VARRTEGYSGDDLTNVCRDASMNGMRRKIAGKTRDEIKNMSKD+
Sbjct: 30210693 MNIVTFQVASDVNIEDVARRTEGYSGDDLTNVCRDASMNGMRRKIAGKTRDEIKNMSKDD 30210514
Query: 316 IAKDPVAMCDFVEALVKVQKSVSPSDIEKHEKWMAEFGSA* 438
I+ DPVAMCDF EA+ KVQ SVS SDIEKHEKW++EFGSA*
Sbjct: 30210513 ISNDPVAMCDFEEAIRKVQPSVSSSDIEKHEKWLSEFGSA* 30210391
Score = 148 bits (317), Expect = 2e-034
Identities = 70/96 (72%), Positives = 76/96 (79%)
Frame = -2 / +2
Query: 434 ADPNSAIHFSCFSMSEGETLF*TFTRASTKSHMATGSLAISSFDMFLISSRVLPAILRLM 255
ADPNS HFSCFS+SE +TL TF AS+KSH+ATGS ISSFDMF ISS V PAILR +
Sbjct: 30210395 ADPNSESHFSCFSISEEDTLGCTFLMASSKSHIATGSFDISSFDMFFISSLVFPAILRRI 30210574
Query: 254 PFIEASRQTFVRSSPL*PSVLRATSSMLTSAAI*TV 147
PFI+AS T VRSSPL PSVLRATSSMLTS A * V
Sbjct: 30210575 PFIDASLHTLVRSSPLYPSVLRATSSMLTSLAT*KV 30210682
>gb|BP609505.1|BP609505 BP609505 RAFL16 Arabidopsis thaliana cDNA clone RAFL16-82-G01 3',
mRNA sequence
Length = 474
Score = 198 bits (426), Expect = 2e-049
Identities = 81/96 (84%), Positives = 91/96 (94%)
Frame = +1 / -3
Query: 151 VQIAADVNIDEVARRTEGYSGDDLTNVCRDASMNGMRRKIAGKTRDEIKNMSKDEIAKDP 330
V++A+DVNI++VARRTEGYSGDDLTNVCRDASMNGMRRKIAGKTRDEIKNMSKD+I+ DP
Sbjct: 472 VEVASDVNIEDVARRTEGYSGDDLTNVCRDASMNGMRRKIAGKTRDEIKNMSKDDISNDP 293
Query: 331 VAMCDFVEALVKVQKSVSPSDIEKHEKWMAEFGSA* 438
VAMCDF EA+ KVQ SVS SDIEKHEKW++EFGSA*
Sbjct: 292 VAMCDFEEAIRKVQPSVSSSDIEKHEKWLSEFGSA* 185
Score = 146 bits (314), Expect = 6e-034
Identities = 68/92 (73%), Positives = 74/92 (80%)
Frame = -2 / +3
Query: 434 ADPNSAIHFSCFSMSEGETLF*TFTRASTKSHMATGSLAISSFDMFLISSRVLPAILRLM 255
ADPNS HFSCFS+SE +TL TF AS+KSH+ATGS ISSFDMF ISS V PAILR +
Sbjct: 189 ADPNSESHFSCFSISEEDTLGCTFLMASSKSHIATGSFDISSFDMFFISSLVFPAILRRI 368
Query: 254 PFIEASRQTFVRSSPL*PSVLRATSSMLTSAA 159
PFI+AS T VRSSPL PSVLRATSSMLTS A
Sbjct: 369 PFIDASLHTLVRSSPLYPSVLRATSSMLTSLA 464
>gb|AI996420.1|AI996420 701665317 A. thaliana, Columbia Col-0, root-1 Arabidopsis thaliana
cDNA clone 701665317, mRNA sequence
Length = 464
Score = 185 bits (399), Expect = 1e-045
Identities = 78/106 (73%), Positives = 89/106 (83%)
Frame = +1 / -1
Query: 121 KALININLRTVQIAADVNIDEVARRTEGYSGDDLTNVCRDASMNGMRRKIAGKTRDEIKN 300
+ IN TV++ +DVNI++V RR EGYSGDD TNV RDASMNGMRRKIAGKTRDEIKN
Sbjct: 458 RLFINTI*ETVEVXSDVNIEDVXRRXEGYSGDDXTNVXRDASMNGMRRKIAGKTRDEIKN 279
Query: 301 MSKDEIAKDPVAMCDFVEALVKVQKSVSPSDIEKHEKWMAEFGSA* 438
MSKD+I+ DPVAMCDF EA+ KVQ SVS SDI KHEKW++EFGSA*
Sbjct: 278 MSKDDISNDPVAMCDFEEAIRKVQPSVSSSDIXKHEKWLSEFGSA* 141
Score = 141 bits (303), Expect = 2e-032
Identities = 67/104 (64%), Positives = 77/104 (74%)
Frame = -2 / +1
Query: 434 ADPNSAIHFSCFSMSEGETLF*TFTRASTKSHMATGSLAISSFDMFLISSRVLPAILRLM 255
ADPNS HFSC S+SE +TL TF AS+KSH+ATGS ISSFDMF ISS V PAILR +
Sbjct: 145 ADPNSESHFSCXSISEXDTLGCTFLMASSKSHIATGSFDISSFDMFFISSLVFPAILRRI 324
Query: 254 PFIEASRQTFVRSSPL*PSVLRATSSMLTSAAI*TVLRLMLISA 123
PFI+AS T V SSPL PS LR TSSMLTS TV +++LI +
Sbjct: 325 PFIDASLXTLVXSSPLYPSXLRXTSSMLTSLXTSTVSQIVLIKS 456
>gb|BP611018.1|BP611018 BP611018 RAFL16 Arabidopsis thaliana cDNA clone RAFL16-84-E09 3',
mRNA sequence
Length = 425
Score = 181 bits (390), Expect = 2e-044
Identities = 75/86 (87%), Positives = 81/86 (94%)
Frame = +1 / -3
Query: 181 EVARRTEGYSGDDLTNVCRDASMNGMRRKIAGKTRDEIKNMSKDEIAKDPVAMCDFVEAL 360
+VARRTEGYSGDDLTNVCRDASMNGMRRKIAGKTRDEIKNMSKD+I+ DPVAMCDF EA+
Sbjct: 423 DVARRTEGYSGDDLTNVCRDASMNGMRRKIAGKTRDEIKNMSKDDISNDPVAMCDFEEAI 244
Query: 361 VKVQKSVSPSDIEKHEKWMAEFGSA* 438
KVQ SVS SDIEKHEKW++EFGSA*
Sbjct: 243 RKVQPSVSSSDIEKHEKWLSEFGSA* 166
Score = 135 bits (289), Expect = 2e-030
Identities = 62/85 (72%), Positives = 68/85 (80%)
Frame = -2 / +2
Query: 434 ADPNSAIHFSCFSMSEGETLF*TFTRASTKSHMATGSLAISSFDMFLISSRVLPAILRLM 255
ADPNS HFSCFS+SE +TL TF AS+KSH+ATGS ISSFDMF ISS V PAILR +
Sbjct: 170 ADPNSESHFSCFSISEEDTLGCTFLMASSKSHIATGSFDISSFDMFFISSLVFPAILRRI 349
Query: 254 PFIEASRQTFVRSSPL*PSVLRATS 180
PFI+AS T VRSSPL PSVLRATS
Sbjct: 350 PFIDASLHTLVRSSPLYPSVLRATS 424
>gb|AV565264.1|AV565264 AV565264 Arabidopsis thaliana green siliques Columbia Arabidopsis
thaliana cDNA clone SQ220g02F 3', mRNA sequence
Length = 429
Score = 169 bits (363), Expect = 1e-040
Identities = 70/84 (83%), Positives = 76/84 (90%)
Frame = +1 / -3
Query: 187 ARRTEGYSGDDLTNVCRDASMNGMRRKIAGKTRDEIKNMSKDEIAKDPVAMCDFVEALVK 366
ARRTEGYSG+DLTNVCRDASMNGMRRKIAGKT DEIKNMSKD+I+ DPVAMCDF EA+ K
Sbjct: 427 ARRTEGYSGNDLTNVCRDASMNGMRRKIAGKTTDEIKNMSKDDISNDPVAMCDFEEAIRK 248
Query: 367 VQKSVSPSDIEKHEKWMAEFGSA* 438
VQ SVS SD EKHEKW++EFG A*
Sbjct: 247 VQPSVSSSDFEKHEKWLSEFGFA* 176
Score = 123 bits (263), Expect = 7e-027
Identities = 57/83 (68%), Positives = 64/83 (77%)
Frame = -2 / +3
Query: 434 ADPNSAIHFSCFSMSEGETLF*TFTRASTKSHMATGSLAISSFDMFLISSRVLPAILRLM 255
A+PNS HFSCFS SE +TL TF AS+KSH+ATGS ISSFDMF ISS V PAILR +
Sbjct: 180 ANPNSESHFSCFSKSEEDTLGCTFLMASSKSHIATGSFDISSFDMFFISSVVFPAILRRI 359
Query: 254 PFIEASRQTFVRSSPL*PSVLRA 186
PFI+AS T V+S PL PSVLRA
Sbjct: 360 PFIDASLHTLVKSFPLYPSVLRA 428
>gb|BP590290.1|BP590290 BP590290 RAFL15 Arabidopsis thaliana cDNA clone RAFL15-10-E22 3',
mRNA sequence
Length = 424
Score = 164 bits (352), Expect = 3e-039
Identities = 68/80 (85%), Positives = 74/80 (92%)
Frame = +1 / -1
Query: 199 EGYSGDDLTNVCRDASMNGMRRKIAGKTRDEIKNMSKDEIAKDPVAMCDFVEALVKVQKS 378
EGY+ DDLTNVCRDASMNGMRRKIAGKTRDEIKNMSKD+I+ DPVAMCDF EA+ KVQ S
Sbjct: 424 EGYT*DDLTNVCRDASMNGMRRKIAGKTRDEIKNMSKDDISNDPVAMCDFEEAIRKVQPS 245
Query: 379 VSPSDIEKHEKWMAEFGSA* 438
VS SDIEKHEKW++EFGSA*
Sbjct: 244 VSSSDIEKHEKWLSEFGSA* 185
Score = 116 bits (248), Expect = 8e-025
Identities = 53/78 (67%), Positives = 60/78 (76%)
Frame = -2 / +3
Query: 434 ADPNSAIHFSCFSMSEGETLF*TFTRASTKSHMATGSLAISSFDMFLISSRVLPAILRLM 255
ADPNS HFSCFS+SE +TL TF AS+KSH+ATGS ISSFDMF ISS V PAILR +
Sbjct: 189 ADPNSESHFSCFSISEEDTLGCTFLMASSKSHIATGSFDISSFDMFFISSLVFPAILRRI 368
Query: 254 PFIEASRQTFVRSSPL*P 201
PFI+AS T VRSS + P
Sbjct: 369 PFIDASLHTLVRSSQVYP 422
>gb|BP587701.1|BP587701 BP587701 RAFL15 Arabidopsis thaliana cDNA clone RAFL15-43-J06 3',
mRNA sequence
Length = 417
Score = 111 bits (236), Expect(2) = 4e-039
Identities = 47/61 (77%), Positives = 52/61 (85%)
Frame = +1 / -2
Query: 256 MRRKIAGKTRDEIKNMSKDEIAKDPVAMCDFVEALVKVQKSVSPSDIEKHEKWMAEFGSA 435
MR GKTRDEIKNMSKD+I+ DPVAMCDF EA+ KVQ SVS SDIEKHEKW++EFGSA
Sbjct: 323 MRPPPPGKTRDEIKNMSKDDISNDPVAMCDFEEAIRKVQPSVSSSDIEKHEKWLSEFGSA 144
Query: 436 * 438
*
Sbjct: 143 * 141
Score = 86.3 bits (182), Expect(2) = 3e-026
Identities = 38/54 (70%), Positives = 42/54 (77%)
Frame = -2 / +1
Query: 434 ADPNSAIHFSCFSMSEGETLF*TFTRASTKSHMATGSLAISSFDMFLISSRVLP 273
ADPNS HFSCFS+SE +TL TF AS+KSH+ATGS ISSFDMF ISS V P
Sbjct: 145 ADPNSESHFSCFSISEEDTLGCTFLMASSKSHIATGSFDISSFDMFFISSLVFP 306
Score = 73.0 bits (153), Expect(2) = 4e-039
Identities = 30/39 (76%), Positives = 33/39 (84%)
Frame = +1 / -3
Query: 163 ADVNIDEVARRTEGYSGDDLTNVCRDASMNGMRRKIAGK 279
+DVNI++VARRTEGYSGDDLTNVCRDASMNG GK
Sbjct: 415 SDVNIEDVARRTEGYSGDDLTNVCRDASMNGCGPPPRGK 299
Score = 54.7 bits (113), Expect(2) = 3e-026
Identities = 25/30 (83%), Positives = 26/30 (86%)
Frame = -2 / +3
Query: 254 PFIEASRQTFVRSSPL*PSVLRATSSMLTS 165
PFI+AS T VRSSPL PSVLRATSSMLTS
Sbjct: 324 PFIDASLHTLVRSSPLYPSVLRATSSMLTS 413
>gb|BP606058.1|BP606058 BP606058 RAFL16 Arabidopsis thaliana cDNA clone RAFL16-69-G12 3',
mRNA sequence
Length = 409
Score = 157 bits (337), Expect = 4e-037
Identities = 65/75 (86%), Positives = 70/75 (93%)
Frame = +1 / -1
Query: 214 DDLTNVCRDASMNGMRRKIAGKTRDEIKNMSKDEIAKDPVAMCDFVEALVKVQKSVSPSD 393
DDLTNVCRDASMNGMRRKIAGKTRDEIKNMSKD+I+ DPVAMCDF EA+ KVQ SVS SD
Sbjct: 409 DDLTNVCRDASMNGMRRKIAGKTRDEIKNMSKDDISNDPVAMCDFEEAIRKVQPSVSSSD 230
Query: 394 IEKHEKWMAEFGSA* 438
IEKHEKW++EFGSA*
Sbjct: 229 IEKHEKWLSEFGSA* 185
Score = 113 bits (241), Expect = 7e-024
Identities = 51/73 (69%), Positives = 57/73 (78%)
Frame = -2 / +3
Query: 434 ADPNSAIHFSCFSMSEGETLF*TFTRASTKSHMATGSLAISSFDMFLISSRVLPAILRLM 255
ADPNS HFSCFS+SE +TL TF AS+KSH+ATGS ISSFDMF ISS V PAILR +
Sbjct: 189 ADPNSESHFSCFSISEEDTLGCTFLMASSKSHIATGSFDISSFDMFFISSLVFPAILRRI 368
Query: 254 PFIEASRQTFVRS 216
PFI+AS T VRS
Sbjct: 369 PFIDASLHTLVRS 407
>gb|AU227693.1|AU227693 AU227693 RAFL15 Arabidopsis thaliana cDNA clone RAFL15-18-M01 3',
mRNA sequence
Length = 459
Score = 90.9 bits (192), Expect(4) = 6e-037
Identities = 37/48 (77%), Positives = 43/48 (89%)
Frame = +1 / -3
Query: 295 KNMSKDEIAKDPVAMCDFVEALVKVQKSVSPSDIEKHEKWMAEFGSA* 438
K+MSKD+I+ DPVAMCDF EA+ KVQ SVS SDIEKHEKW++EFGSA*
Sbjct: 289 KDMSKDDISNDPVAMCDFEEAIRKVQPSVSSSDIEKHEKWLSEFGSA* 146
Score = 55.6 bits (115), Expect(4) = 6e-037
Identities = 22/28 (78%), Positives = 28/28 (100%)
Frame = +1 / -1
Query: 121 KALININLRTVQIAADVNIDEVARRTEG 204
KALININLRTV++A+DVNI++VARRT+G
Sbjct: 459 KALININLRTVEVASDVNIEDVARRTKG 376
Score = 35.9 bits (72), Expect(4) = 6e-037
Identities = 15/20 (75%), Positives = 16/20 (80%)
Frame = +1 / -1
Query: 250 NGMRRKIAGKTRDEIKNMSK 309
+GM RKIAGKTRDEIK K
Sbjct: 333 HGMPRKIAGKTRDEIKTCRK 274
Score = 29.9 bits (59), Expect(4) = 6e-037
Identities = 11/11 (100%), Positives = 11/11 (100%)
Frame = +1 / -3
Query: 199 EGYSGDDLTNV 231
EGYSGDDLTNV
Sbjct: 382 EGYSGDDLTNV 350
>gb|BP598877.1|BP598877 BP598877 RAFL16 Arabidopsis thaliana cDNA clone RAFL16-05-A02 3',
mRNA sequence
Length = 408
Score = 100 bits (213), Expect(2) = 3e-031
Identities = 42/56 (75%), Positives = 48/56 (85%)
Frame = +1 / -1
Query: 271 AGKTRDEIKNMSKDEIAKDPVAMCDFVEALVKVQKSVSPSDIEKHEKWMAEFGSA* 438
AGK +IKNMSKD+I+ DPVAMCDF EA+ KVQ SVS SDIEKHEKW++EFGSA*
Sbjct: 354 AGKREIKIKNMSKDDISNDPVAMCDFEEAIRKVQPSVSSSDIEKHEKWLSEFGSA* 187
Score = 57.0 bits (118), Expect(2) = 3e-031
Identities = 23/26 (88%), Positives = 24/26 (92%)
Frame = +1 / -3
Query: 220 LTNVCRDASMNGMRRKIAGKTRDEIK 297
LTNVCRDASMNGMRRKI GKTRD+ K
Sbjct: 406 LTNVCRDASMNGMRRKIGGKTRDKNK 329
>gb|AV796219.1|AV796219 AV796219 RAFL9 Arabidopsis thaliana cDNA clone RAFL09-07-A21 3',
mRNA sequence
Length = 426
Score = 111 bits (238), Expect(2) = 9e-028
Identities = 48/73 (65%), Positives = 57/73 (78%)
Frame = +1 / -1
Query: 169 VNIDEVARRTEGYSGDDLTNVCRDASMNGMRRKIAGKTRDEIKNMSKDEIAKDPVAMCDF 348
VN + +ARRTEGY+G DLTNVCR AS+NGMRRKI KTRDEIKN+SK +I+ PV MCDF
Sbjct: 426 VNNENLARRTEGYTGHDLTNVCRYASINGMRRKITVKTRDEIKNISKHDISHYPVPMCDF 247
Query: 349 VEALVKVQKSVSP 387
+A+ KVQ P
Sbjct: 246 EQAIRKVQPLCLP 208
Score = 34.1 bits (68), Expect(2) = 9e-028
Identities = 14/21 (66%), Positives = 18/21 (85%)
Frame = +1 / -3
Query: 376 SVSPSDIEKHEKWMAEFGSA* 438
+VS SDIEKHEK +++FG A*
Sbjct: 220 AVSSSDIEKHEKCLSDFGFA* 158
>gb|BP596280.1|BP596280 BP596280 RAFL15 Arabidopsis thaliana cDNA clone RAFL15-33-N19 3',
mRNA sequence
Length = 443
Score = 104 bits (221), Expect(2) = 1e-022
Identities = 42/44 (95%), Positives = 44/44 (100%)
Frame = +1 / -3
Query: 172 NIDEVARRTEGYSGDDLTNVCRDASMNGMRRKIAGKTRDEIKNM 303
NI++VARRTEGYSGDDLTNVCRDASMNGMRRKIAGKTRDEIKNM
Sbjct: 441 NIEDVARRTEGYSGDDLTNVCRDASMNGMRRKIAGKTRDEIKNM 310
Score = 24.4 bits (47), Expect(2) = 1e-022
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = +3 / -3
Query: 378 CLAFRHREA*EVDG*VWVCL 437
C+ +RE EV *VW+CL
Sbjct: 234 CVFL*YRETREVAL*VWICL 175
>gb|BP619228.1|BP619228 BP619228 RAFL16 Arabidopsis thaliana cDNA clone RAFL16-31-I17 3',
mRNA sequence
Length = 435
Score = 101 bits (216), Expect(2) = 9e-021
Identities = 42/55 (76%), Positives = 49/55 (89%)
Frame = +1 / -3
Query: 274 GKTRDEIKNMSKDEIAKDPVAMCDFVEALVKVQKSVSPSDIEKHEKWMAEFGSA* 438
G+TRD IKN+SKD+I+ DPVAMCDF EA+ KVQ SVS SDIEKHEKW++EFGSA*
Sbjct: 349 GETRD*IKNISKDDISNDPVAMCDFEEAIRKVQPSVSSSDIEKHEKWLSEFGSA* 185
Score = 21.7 bits (41), Expect(2) = 9e-021
Identities = 8/9 (88%), Positives = 8/9 (88%)
Frame = +1 / -3
Query: 211 GDDLTNVCR 237
GDDLTNV R
Sbjct: 409 GDDLTNVSR 383
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 1,519,021,573
Number of Sequences: 1013581
Number of extensions: 20886013
Number of successful extensions: 169981
Number of sequences better than 1.0e-020: 27
length of database: 302,980,290
effective HSP length: 56
effective length of database: 246,219,754
effective search space used: 46535533506
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)