TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2161284.2.6
(621 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AV782349.1|AV782349 AV782349 RAFL4 Arabidopsis thaliana ... 180 4e-044
gb|AV821803.1|AV821803 AV821803 RAFL4 Arabidopsis thaliana ... 180 4e-044
gb|AV533918.1|AV533918 AV533918 Arabidopsis thaliana flower... 180 4e-044
gb|AV534287.1|AV534287 AV534287 Arabidopsis thaliana flower... 180 4e-044
gb|CK120023.1|CK120023 218p08.p1 AtM1 Arabidopsis thaliana ... 180 4e-044
gb|BT002035.1| Arabidopsis thaliana putative small nuclear ... 180 4e-044
gb|AY088256.1| Arabidopsis thaliana clone 4850 mRNA, comple... 180 4e-044
emb|BX820713.1|CNS0AA7G Arabidopsis thaliana Full-length cD... 180 4e-044
emb|BX821884.1|CNS0AA5U Arabidopsis thaliana Full-length cD... 180 4e-044
ref|NM_127954.1| Arabidopsis thaliana unknown protein AT2G2... 180 4e-044
gb|AV785010.1|AV785010 AV785010 RAFL6 Arabidopsis thaliana ... 174 3e-042
gb|AV823925.1|AV823925 AV823925 RAFL6 Arabidopsis thaliana ... 174 3e-042
gb|AV535171.1|AV535171 AV535171 Arabidopsis thaliana flower... 174 3e-042
gb|AV535455.1|AV535455 AV535455 Arabidopsis thaliana flower... 174 3e-042
gb|AY062818.1| Arabidopsis thaliana putative small nuclear ... 174 3e-042
emb|BX825656.1|CNS0A7P7 Arabidopsis thaliana Full-length cD... 174 3e-042
ref|NM_111983.4| Arabidopsis thaliana unknown protein AT3G1... 174 3e-042
gb|BP802121.1|BP802121 BP802121 RAFL14 Arabidopsis thaliana... 174 3e-042
gb|BP865594.1|BP865594 BP865594 RAFL21 Arabidopsis thaliana... 174 3e-042
gb|BT006498.1| Arabidopsis thaliana At2g23930 gene, complet... 174 3e-042
gb|BT001203.1| Arabidopsis thaliana putative small nuclear ... 173 5e-042
emb|BX825320.1|CNS0A7PN Arabidopsis thaliana Full-length cD... 172 7e-042
gb|BP653691.1|BP653691 BP653691 RAFL19 Arabidopsis thaliana... 170 5e-041
gb|BP866681.1|BP866681 BP866681 RAFL21 Arabidopsis thaliana... 168 2e-040
gb|BP859350.1|BP859350 BP859350 RAFL21 Arabidopsis thaliana... 127 1e-034
gb|AV532322.1|AV532322 AV532322 Arabidopsis thaliana flower... 143 5e-033
gb|BE662730.1|BE662730 EST00251 Arabidopsis Acute Ozone Rev... 142 9e-033
gb|AA597812.1|AA597812 29879 Lambda-PRL2 Arabidopsis thalia... 137 3e-031
gb|BP671940.1|BP671940 BP671940 RAFL21 Arabidopsis thaliana... 100 2e-028
gb|AC005170.3| Arabidopsis thaliana chromosome 2 clone T29E... 95 5e-025
gb|B68003.1|B68003 T23O17TR.1 TAMU Arabidopsis thaliana gen... 93 1e-024
gb|B29014.1|B29014 T23O17TR TAMU Arabidopsis thaliana genom... 93 1e-024
gb|AC008153.5|AC008153 Arabidopsis thaliana chromosome 3 BA... 94 4e-024
>gb|AV782349.1|AV782349 AV782349 RAFL4 Arabidopsis thaliana cDNA clone RAFL04-16-J17 3',
mRNA sequence
Length = 539
Score = 180 bits (387), Expect = 4e-044
Identities = 74/85 (87%), Positives = 81/85 (95%)
Frame = -3 / -2
Query: 484 TMSRSGQPPDLKKYMDKKLQIKMNANRVVIGTLRGFDQFMNLVVDNTVEVNGNDKTDIGM 305
TMSRSGQPPDLKKYMDKKLQIK+NANR+V GTLRGFDQFMNLVVDNTVEVNGNDKTDIGM
Sbjct: 457 TMSRSGQPPDLKKYMDKKLQIKLNANRMVTGTLRGFDQFMNLVVDNTVEVNGNDKTDIGM 278
Query: 304 VVIRGNSVVMIEALEPVARSQ*IIV 230
VVIRGNS+V +EALEPV RS *+++
Sbjct: 277 VVIRGNSIVTVEALEPVGRSS*LVI 203
Score = 107 bits (229), Expect = 3e-022
Identities = 52/80 (65%), Positives = 54/80 (67%)
Frame = +3 / +3
Query: 246 DLATGSSASXXXXXXXXXXXXXXSVLSFPLTSTVLSTTRFMNWSNPRSVPITTRFAFILI 425
DL TGS AS SVLS P TSTVLSTTRFMN SNPR VP+T R A LI
Sbjct: 219 DLPTGSRASTVTMLFPLITTIPMSVLSLPFTSTVLSTTRFMN*SNPRRVPVTIRLALSLI 398
Query: 426 *SFLSMYFLRSGGCPERLMV 485
SFLSMYFLRSGG PERL+V
Sbjct: 399 WSFLSMYFLRSGG*PERLIV 458
>gb|AV821803.1|AV821803 AV821803 RAFL4 Arabidopsis thaliana cDNA clone RAFL04-16-J17 5',
mRNA sequence
Length = 576
Score = 180 bits (387), Expect = 4e-044
Identities = 74/85 (87%), Positives = 81/85 (95%)
Frame = -3 / +2
Query: 484 TMSRSGQPPDLKKYMDKKLQIKMNANRVVIGTLRGFDQFMNLVVDNTVEVNGNDKTDIGM 305
TMSRSGQPPDLKKYMDKKLQIK+NANR+V GTLRGFDQFMNLVVDNTVEVNGNDKTDIGM
Sbjct: 83 TMSRSGQPPDLKKYMDKKLQIKLNANRMVTGTLRGFDQFMNLVVDNTVEVNGNDKTDIGM 262
Query: 304 VVIRGNSVVMIEALEPVARSQ*IIV 230
VVIRGNS+V +EALEPV RS *+++
Sbjct: 263 VVIRGNSIVTVEALEPVGRSS*LVI 337
Score = 107 bits (229), Expect = 3e-022
Identities = 52/80 (65%), Positives = 54/80 (67%)
Frame = +3 / -1
Query: 246 DLATGSSASXXXXXXXXXXXXXXSVLSFPLTSTVLSTTRFMNWSNPRSVPITTRFAFILI 425
DL TGS AS SVLS P TSTVLSTTRFMN SNPR VP+T R A LI
Sbjct: 321 DLPTGSRASTVTMLFPLITTIPMSVLSLPFTSTVLSTTRFMN*SNPRRVPVTIRLALSLI 142
Query: 426 *SFLSMYFLRSGGCPERLMV 485
SFLSMYFLRSGG PERL+V
Sbjct: 141 WSFLSMYFLRSGG*PERLIV 82
>gb|AV533918.1|AV533918 AV533918 Arabidopsis thaliana flower buds Columbia Arabidopsis
thaliana cDNA clone FB070d02F 3', mRNA sequence
Length = 470
Score = 180 bits (387), Expect = 4e-044
Identities = 74/85 (87%), Positives = 81/85 (95%)
Frame = -3 / -2
Query: 484 TMSRSGQPPDLKKYMDKKLQIKMNANRVVIGTLRGFDQFMNLVVDNTVEVNGNDKTDIGM 305
TMSRSGQPPDLKKYMDKKLQIK+NANR+V GTLRGFDQFMNLVVDNTVEVNGNDKTDIGM
Sbjct: 427 TMSRSGQPPDLKKYMDKKLQIKLNANRMVTGTLRGFDQFMNLVVDNTVEVNGNDKTDIGM 248
Query: 304 VVIRGNSVVMIEALEPVARSQ*IIV 230
VVIRGNS+V +EALEPV RS *+++
Sbjct: 247 VVIRGNSIVTVEALEPVGRSS*LVI 173
Score = 107 bits (229), Expect = 3e-022
Identities = 52/80 (65%), Positives = 54/80 (67%)
Frame = +3 / +3
Query: 246 DLATGSSASXXXXXXXXXXXXXXSVLSFPLTSTVLSTTRFMNWSNPRSVPITTRFAFILI 425
DL TGS AS SVLS P TSTVLSTTRFMN SNPR VP+T R A LI
Sbjct: 189 DLPTGSRASTVTMLFPLITTIPMSVLSLPFTSTVLSTTRFMN*SNPRRVPVTIRLALSLI 368
Query: 426 *SFLSMYFLRSGGCPERLMV 485
SFLSMYFLRSGG PERL+V
Sbjct: 369 WSFLSMYFLRSGG*PERLIV 428
>gb|AV534287.1|AV534287 AV534287 Arabidopsis thaliana flower buds Columbia Arabidopsis
thaliana cDNA clone FB077f01F 3', mRNA sequence
Length = 463
Score = 180 bits (387), Expect = 4e-044
Identities = 74/85 (87%), Positives = 81/85 (95%)
Frame = -3 / -1
Query: 484 TMSRSGQPPDLKKYMDKKLQIKMNANRVVIGTLRGFDQFMNLVVDNTVEVNGNDKTDIGM 305
TMSRSGQPPDLKKYMDKKLQIK+NANR+V GTLRGFDQFMNLVVDNTVEVNGNDKTDIGM
Sbjct: 427 TMSRSGQPPDLKKYMDKKLQIKLNANRMVTGTLRGFDQFMNLVVDNTVEVNGNDKTDIGM 248
Query: 304 VVIRGNSVVMIEALEPVARSQ*IIV 230
VVIRGNS+V +EALEPV RS *+++
Sbjct: 247 VVIRGNSIVTVEALEPVGRSS*LVI 173
Score = 107 bits (229), Expect = 3e-022
Identities = 52/80 (65%), Positives = 54/80 (67%)
Frame = +3 / +3
Query: 246 DLATGSSASXXXXXXXXXXXXXXSVLSFPLTSTVLSTTRFMNWSNPRSVPITTRFAFILI 425
DL TGS AS SVLS P TSTVLSTTRFMN SNPR VP+T R A LI
Sbjct: 189 DLPTGSRASTVTMLFPLITTIPMSVLSLPFTSTVLSTTRFMN*SNPRRVPVTIRLALSLI 368
Query: 426 *SFLSMYFLRSGGCPERLMV 485
SFLSMYFLRSGG PERL+V
Sbjct: 369 WSFLSMYFLRSGG*PERLIV 428
>gb|CK120023.1|CK120023 218p08.p1 AtM1 Arabidopsis thaliana cDNA clone MPMGp2011P08218
5-PRIME, mRNA sequence
Length = 486
Score = 180 bits (387), Expect = 4e-044
Identities = 74/85 (87%), Positives = 81/85 (95%)
Frame = -3 / +3
Query: 484 TMSRSGQPPDLKKYMDKKLQIKMNANRVVIGTLRGFDQFMNLVVDNTVEVNGNDKTDIGM 305
TMSRSGQPPDLKKYMDKKLQIK+NANR+V GTLRGFDQFMNLVVDNTVEVNGNDKTDIGM
Sbjct: 60 TMSRSGQPPDLKKYMDKKLQIKLNANRMVTGTLRGFDQFMNLVVDNTVEVNGNDKTDIGM 239
Query: 304 VVIRGNSVVMIEALEPVARSQ*IIV 230
VVIRGNS+V +EALEPV RS *+++
Sbjct: 240 VVIRGNSIVTVEALEPVGRSS*LVI 314
Score = 107 bits (229), Expect = 3e-022
Identities = 52/80 (65%), Positives = 54/80 (67%)
Frame = +3 / -3
Query: 246 DLATGSSASXXXXXXXXXXXXXXSVLSFPLTSTVLSTTRFMNWSNPRSVPITTRFAFILI 425
DL TGS AS SVLS P TSTVLSTTRFMN SNPR VP+T R A LI
Sbjct: 298 DLPTGSRASTVTMLFPLITTIPMSVLSLPFTSTVLSTTRFMN*SNPRRVPVTIRLALSLI 119
Query: 426 *SFLSMYFLRSGGCPERLMV 485
SFLSMYFLRSGG PERL+V
Sbjct: 118 WSFLSMYFLRSGG*PERLIV 59
>gb|BT002035.1| Arabidopsis thaliana putative small nuclear ribonucleoprotein E
(At2g23930) mRNA, complete cds
Length = 537
Score = 180 bits (387), Expect = 4e-044
Identities = 74/85 (87%), Positives = 81/85 (95%)
Frame = -3 / +1
Query: 484 TMSRSGQPPDLKKYMDKKLQIKMNANRVVIGTLRGFDQFMNLVVDNTVEVNGNDKTDIGM 305
TMSRSGQPPDLKKYMDKKLQIK+NANR+V GTLRGFDQFMNLVVDNTVEVNGNDKTDIGM
Sbjct: 82 TMSRSGQPPDLKKYMDKKLQIKLNANRMVTGTLRGFDQFMNLVVDNTVEVNGNDKTDIGM 261
Query: 304 VVIRGNSVVMIEALEPVARSQ*IIV 230
VVIRGNS+V +EALEPV RS *+++
Sbjct: 262 VVIRGNSIVTVEALEPVGRSS*LVI 336
Score = 107 bits (229), Expect = 3e-022
Identities = 52/80 (65%), Positives = 54/80 (67%)
Frame = +3 / -2
Query: 246 DLATGSSASXXXXXXXXXXXXXXSVLSFPLTSTVLSTTRFMNWSNPRSVPITTRFAFILI 425
DL TGS AS SVLS P TSTVLSTTRFMN SNPR VP+T R A LI
Sbjct: 320 DLPTGSRASTVTMLFPLITTIPMSVLSLPFTSTVLSTTRFMN*SNPRRVPVTIRLALSLI 141
Query: 426 *SFLSMYFLRSGGCPERLMV 485
SFLSMYFLRSGG PERL+V
Sbjct: 140 WSFLSMYFLRSGG*PERLIV 81
>gb|AY088256.1| Arabidopsis thaliana clone 4850 mRNA, complete sequence
Length = 548
Score = 180 bits (387), Expect = 4e-044
Identities = 74/85 (87%), Positives = 81/85 (95%)
Frame = -3 / +2
Query: 484 TMSRSGQPPDLKKYMDKKLQIKMNANRVVIGTLRGFDQFMNLVVDNTVEVNGNDKTDIGM 305
TMSRSGQPPDLKKYMDKKLQIK+NANR+V GTLRGFDQFMNLVVDNTVEVNGNDKTDIGM
Sbjct: 89 TMSRSGQPPDLKKYMDKKLQIKLNANRMVTGTLRGFDQFMNLVVDNTVEVNGNDKTDIGM 268
Query: 304 VVIRGNSVVMIEALEPVARSQ*IIV 230
VVIRGNS+V +EALEPV RS *+++
Sbjct: 269 VVIRGNSIVTVEALEPVGRSS*LVI 343
Score = 107 bits (229), Expect = 3e-022
Identities = 52/80 (65%), Positives = 54/80 (67%)
Frame = +3 / -3
Query: 246 DLATGSSASXXXXXXXXXXXXXXSVLSFPLTSTVLSTTRFMNWSNPRSVPITTRFAFILI 425
DL TGS AS SVLS P TSTVLSTTRFMN SNPR VP+T R A LI
Sbjct: 327 DLPTGSRASTVTMLFPLITTIPMSVLSLPFTSTVLSTTRFMN*SNPRRVPVTIRLALSLI 148
Query: 426 *SFLSMYFLRSGGCPERLMV 485
SFLSMYFLRSGG PERL+V
Sbjct: 147 WSFLSMYFLRSGG*PERLIV 88
>emb|BX820713.1|CNS0AA7G Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTPGH61ZH01 of Hormone Treated Callus of strain col-0
of Arabidopsis thaliana (thale cress)
Length = 497
Score = 180 bits (387), Expect = 4e-044
Identities = 74/85 (87%), Positives = 81/85 (95%)
Frame = -3 / +3
Query: 484 TMSRSGQPPDLKKYMDKKLQIKMNANRVVIGTLRGFDQFMNLVVDNTVEVNGNDKTDIGM 305
TMSRSGQPPDLKKYMDKKLQIK+NANR+V GTLRGFDQFMNLVVDNTVEVNGNDKTDIGM
Sbjct: 60 TMSRSGQPPDLKKYMDKKLQIKLNANRMVTGTLRGFDQFMNLVVDNTVEVNGNDKTDIGM 239
Query: 304 VVIRGNSVVMIEALEPVARSQ*IIV 230
VVIRGNS+V +EALEPV RS *+++
Sbjct: 240 VVIRGNSIVTVEALEPVGRSS*LVI 314
Score = 107 bits (229), Expect = 3e-022
Identities = 52/80 (65%), Positives = 54/80 (67%)
Frame = +3 / -2
Query: 246 DLATGSSASXXXXXXXXXXXXXXSVLSFPLTSTVLSTTRFMNWSNPRSVPITTRFAFILI 425
DL TGS AS SVLS P TSTVLSTTRFMN SNPR VP+T R A LI
Sbjct: 298 DLPTGSRASTVTMLFPLITTIPMSVLSLPFTSTVLSTTRFMN*SNPRRVPVTIRLALSLI 119
Query: 426 *SFLSMYFLRSGGCPERLMV 485
SFLSMYFLRSGG PERL+V
Sbjct: 118 WSFLSMYFLRSGG*PERLIV 59
>emb|BX821884.1|CNS0AA5U Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTSIL81ZG07 of Silique of strain col-0 of Arabidopsis
thaliana (thale cress)
Length = 486
Score = 180 bits (387), Expect = 4e-044
Identities = 74/85 (87%), Positives = 81/85 (95%)
Frame = -3 / +2
Query: 484 TMSRSGQPPDLKKYMDKKLQIKMNANRVVIGTLRGFDQFMNLVVDNTVEVNGNDKTDIGM 305
TMSRSGQPPDLKKYMDKKLQIK+NANR+V GTLRGFDQFMNLVVDNTVEVNGNDKTDIGM
Sbjct: 62 TMSRSGQPPDLKKYMDKKLQIKLNANRMVTGTLRGFDQFMNLVVDNTVEVNGNDKTDIGM 241
Query: 304 VVIRGNSVVMIEALEPVARSQ*IIV 230
VVIRGNS+V +EALEPV RS *+++
Sbjct: 242 VVIRGNSIVTVEALEPVGRSS*LVI 316
Score = 107 bits (229), Expect = 3e-022
Identities = 52/80 (65%), Positives = 54/80 (67%)
Frame = +3 / -1
Query: 246 DLATGSSASXXXXXXXXXXXXXXSVLSFPLTSTVLSTTRFMNWSNPRSVPITTRFAFILI 425
DL TGS AS SVLS P TSTVLSTTRFMN SNPR VP+T R A LI
Sbjct: 300 DLPTGSRASTVTMLFPLITTIPMSVLSLPFTSTVLSTTRFMN*SNPRRVPVTIRLALSLI 121
Query: 426 *SFLSMYFLRSGGCPERLMV 485
SFLSMYFLRSGG PERL+V
Sbjct: 120 WSFLSMYFLRSGG*PERLIV 61
>ref|NM_127954.1| Arabidopsis thaliana unknown protein AT2G23930 mRNA, complete cds
Length = 545
Score = 180 bits (387), Expect = 4e-044
Identities = 74/85 (87%), Positives = 81/85 (95%)
Frame = -3 / +2
Query: 484 TMSRSGQPPDLKKYMDKKLQIKMNANRVVIGTLRGFDQFMNLVVDNTVEVNGNDKTDIGM 305
TMSRSGQPPDLKKYMDKKLQIK+NANR+V GTLRGFDQFMNLVVDNTVEVNGNDKTDIGM
Sbjct: 86 TMSRSGQPPDLKKYMDKKLQIKLNANRMVTGTLRGFDQFMNLVVDNTVEVNGNDKTDIGM 265
Query: 304 VVIRGNSVVMIEALEPVARSQ*IIV 230
VVIRGNS+V +EALEPV RS *+++
Sbjct: 266 VVIRGNSIVTVEALEPVGRSS*LVI 340
Score = 107 bits (229), Expect = 3e-022
Identities = 52/80 (65%), Positives = 54/80 (67%)
Frame = +3 / -3
Query: 246 DLATGSSASXXXXXXXXXXXXXXSVLSFPLTSTVLSTTRFMNWSNPRSVPITTRFAFILI 425
DL TGS AS SVLS P TSTVLSTTRFMN SNPR VP+T R A LI
Sbjct: 324 DLPTGSRASTVTMLFPLITTIPMSVLSLPFTSTVLSTTRFMN*SNPRRVPVTIRLALSLI 145
Query: 426 *SFLSMYFLRSGGCPERLMV 485
SFLSMYFLRSGG PERL+V
Sbjct: 144 WSFLSMYFLRSGG*PERLIV 85
>gb|AV785010.1|AV785010 AV785010 RAFL6 Arabidopsis thaliana cDNA clone RAFL06-10-G07 3',
mRNA sequence
Length = 551
Score = 174 bits (374), Expect = 3e-042
Identities = 71/82 (86%), Positives = 79/82 (96%)
Frame = -3 / -2
Query: 490 AVTMSRSGQPPDLKKYMDKKLQIKMNANRVVIGTLRGFDQFMNLVVDNTVEVNGNDKTDI 311
+ +MSRSGQPPDLKKYMDKKLQIK+NANR+V+GTLRGFDQFMNLVVDNTVEVNG+DKTDI
Sbjct: 460 SASMSRSGQPPDLKKYMDKKLQIKLNANRMVVGTLRGFDQFMNLVVDNTVEVNGDDKTDI 281
Query: 310 GMVVIRGNSVVMIEALEPVARS 245
GMVVIRGNS+V +EALEPV RS
Sbjct: 280 GMVVIRGNSIVTVEALEPVGRS 215
Score = 102 bits (218), Expect = 9e-021
Identities = 53/96 (55%), Positives = 58/96 (60%)
Frame = +3 / +3
Query: 246 DLATGSSASXXXXXXXXXXXXXXSVLSFPLTSTVLSTTRFMNWSNPRSVPITTRFAFILI 425
DL TGS AS SVLS PLTSTVLSTTRFMN S PR VP T A LI
Sbjct: 216 DLPTGSRASTVTMLFPLITTIPMSVLSSPLTSTVLSTTRFMN*SKPRRVPTTILLALSLI 395
Query: 426 *SFLSMYFLRSGGCPERLMVTAT*PRTRERKGFASS 533
SFLSMYFLRSGG P+RL++ + E GF S+
Sbjct: 396 WSFLSMYFLRSGG*PDRLILAESEKTKNESLGFFSA 503
>gb|AV823925.1|AV823925 AV823925 RAFL6 Arabidopsis thaliana cDNA clone RAFL06-10-G07 5',
mRNA sequence
Length = 569
Score = 174 bits (374), Expect = 3e-042
Identities = 71/82 (86%), Positives = 79/82 (96%)
Frame = -3 / +3
Query: 490 AVTMSRSGQPPDLKKYMDKKLQIKMNANRVVIGTLRGFDQFMNLVVDNTVEVNGNDKTDI 311
+ +MSRSGQPPDLKKYMDKKLQIK+NANR+V+GTLRGFDQFMNLVVDNTVEVNG+DKTDI
Sbjct: 69 SASMSRSGQPPDLKKYMDKKLQIKLNANRMVVGTLRGFDQFMNLVVDNTVEVNGDDKTDI 248
Query: 310 GMVVIRGNSVVMIEALEPVARS 245
GMVVIRGNS+V +EALEPV RS
Sbjct: 249 GMVVIRGNSIVTVEALEPVGRS 314
Score = 102 bits (218), Expect = 9e-021
Identities = 53/96 (55%), Positives = 58/96 (60%)
Frame = +3 / -2
Query: 246 DLATGSSASXXXXXXXXXXXXXXSVLSFPLTSTVLSTTRFMNWSNPRSVPITTRFAFILI 425
DL TGS AS SVLS PLTSTVLSTTRFMN S PR VP T A LI
Sbjct: 313 DLPTGSRASTVTMLFPLITTIPMSVLSSPLTSTVLSTTRFMN*SKPRRVPTTILLALSLI 134
Query: 426 *SFLSMYFLRSGGCPERLMVTAT*PRTRERKGFASS 533
SFLSMYFLRSGG P+RL++ + E GF S+
Sbjct: 133 WSFLSMYFLRSGG*PDRLILAESEKTKNESLGFFSA 26
>gb|AV535171.1|AV535171 AV535171 Arabidopsis thaliana flower buds Columbia Arabidopsis
thaliana cDNA clone FB092a09F 3', mRNA sequence
Length = 523
Score = 174 bits (374), Expect = 3e-042
Identities = 71/82 (86%), Positives = 79/82 (96%)
Frame = -3 / -2
Query: 490 AVTMSRSGQPPDLKKYMDKKLQIKMNANRVVIGTLRGFDQFMNLVVDNTVEVNGNDKTDI 311
+ +MSRSGQPPDLKKYMDKKLQIK+NANR+V+GTLRGFDQFMNLVVDNTVEVNG+DKTDI
Sbjct: 462 SASMSRSGQPPDLKKYMDKKLQIKLNANRMVVGTLRGFDQFMNLVVDNTVEVNGDDKTDI 283
Query: 310 GMVVIRGNSVVMIEALEPVARS 245
GMVVIRGNS+V +EALEPV RS
Sbjct: 282 GMVVIRGNSIVTVEALEPVGRS 217
Score = 102 bits (218), Expect = 9e-021
Identities = 53/96 (55%), Positives = 58/96 (60%)
Frame = +3 / +2
Query: 246 DLATGSSASXXXXXXXXXXXXXXSVLSFPLTSTVLSTTRFMNWSNPRSVPITTRFAFILI 425
DL TGS AS SVLS PLTSTVLSTTRFMN S PR VP T A LI
Sbjct: 218 DLPTGSRASTVTMLFPLITTIPMSVLSSPLTSTVLSTTRFMN*SKPRRVPTTILLALSLI 397
Query: 426 *SFLSMYFLRSGGCPERLMVTAT*PRTRERKGFASS 533
SFLSMYFLRSGG P+RL++ + E GF S+
Sbjct: 398 WSFLSMYFLRSGG*PDRLILAESEKTKNESLGFFSA 505
>gb|AV535455.1|AV535455 AV535455 Arabidopsis thaliana flower buds Columbia Arabidopsis
thaliana cDNA clone FB096f12F 3', mRNA sequence
Length = 506
Score = 174 bits (374), Expect = 3e-042
Identities = 71/82 (86%), Positives = 79/82 (96%)
Frame = -3 / -3
Query: 490 AVTMSRSGQPPDLKKYMDKKLQIKMNANRVVIGTLRGFDQFMNLVVDNTVEVNGNDKTDI 311
+ +MSRSGQPPDLKKYMDKKLQIK+NANR+V+GTLRGFDQFMNLVVDNTVEVNG+DKTDI
Sbjct: 462 SASMSRSGQPPDLKKYMDKKLQIKLNANRMVVGTLRGFDQFMNLVVDNTVEVNGDDKTDI 283
Query: 310 GMVVIRGNSVVMIEALEPVARS 245
GMVVIRGNS+V +EALEPV RS
Sbjct: 282 GMVVIRGNSIVTVEALEPVGRS 217
Score = 102 bits (218), Expect = 9e-021
Identities = 53/96 (55%), Positives = 58/96 (60%)
Frame = +3 / +2
Query: 246 DLATGSSASXXXXXXXXXXXXXXSVLSFPLTSTVLSTTRFMNWSNPRSVPITTRFAFILI 425
DL TGS AS SVLS PLTSTVLSTTRFMN S PR VP T A LI
Sbjct: 218 DLPTGSRASTVTMLFPLITTIPMSVLSSPLTSTVLSTTRFMN*SKPRRVPTTILLALSLI 397
Query: 426 *SFLSMYFLRSGGCPERLMVTAT*PRTRERKGFASS 533
SFLSMYFLRSGG P+RL++ + E GF S+
Sbjct: 398 WSFLSMYFLRSGG*PDRLILAESEKTKNESLGFFSA 505
>gb|AY062818.1| Arabidopsis thaliana putative small nuclear ribonucleoprotein
polypeptide G (At3g11500; F24K9.17) mRNA, complete cds
Length = 530
Score = 174 bits (374), Expect = 3e-042
Identities = 71/82 (86%), Positives = 79/82 (96%)
Frame = -3 / +2
Query: 490 AVTMSRSGQPPDLKKYMDKKLQIKMNANRVVIGTLRGFDQFMNLVVDNTVEVNGNDKTDI 311
+ +MSRSGQPPDLKKYMDKKLQIK+NANR+V+GTLRGFDQFMNLVVDNTVEVNG+DKTDI
Sbjct: 68 SASMSRSGQPPDLKKYMDKKLQIKLNANRMVVGTLRGFDQFMNLVVDNTVEVNGDDKTDI 247
Query: 310 GMVVIRGNSVVMIEALEPVARS 245
GMVVIRGNS+V +EALEPV RS
Sbjct: 248 GMVVIRGNSIVTVEALEPVGRS 313
Score = 102 bits (218), Expect = 9e-021
Identities = 53/96 (55%), Positives = 58/96 (60%)
Frame = +3 / -3
Query: 246 DLATGSSASXXXXXXXXXXXXXXSVLSFPLTSTVLSTTRFMNWSNPRSVPITTRFAFILI 425
DL TGS AS SVLS PLTSTVLSTTRFMN S PR VP T A LI
Sbjct: 312 DLPTGSRASTVTMLFPLITTIPMSVLSSPLTSTVLSTTRFMN*SKPRRVPTTILLALSLI 133
Query: 426 *SFLSMYFLRSGGCPERLMVTAT*PRTRERKGFASS 533
SFLSMYFLRSGG P+RL++ + E GF S+
Sbjct: 132 WSFLSMYFLRSGG*PDRLILAESEKTKNESLGFFSA 25
>emb|BX825656.1|CNS0A7P7 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTSIL54ZA08 of Silique of strain col-0 of Arabidopsis
thaliana (thale cress)
Length = 468
Score = 174 bits (374), Expect = 3e-042
Identities = 71/82 (86%), Positives = 79/82 (96%)
Frame = -3 / +2
Query: 490 AVTMSRSGQPPDLKKYMDKKLQIKMNANRVVIGTLRGFDQFMNLVVDNTVEVNGNDKTDI 311
+ +MSRSGQPPDLKKYMDKKLQIK+NANR+V+GTLRGFDQFMNLVVDNTVEVNG+DKTDI
Sbjct: 110 SASMSRSGQPPDLKKYMDKKLQIKLNANRMVVGTLRGFDQFMNLVVDNTVEVNGDDKTDI 289
Query: 310 GMVVIRGNSVVMIEALEPVARS 245
GMVVIRGNS+V +EALEPV RS
Sbjct: 290 GMVVIRGNSIVTVEALEPVGRS 355
Score = 102 bits (218), Expect = 9e-021
Identities = 53/96 (55%), Positives = 58/96 (60%)
Frame = +3 / -1
Query: 246 DLATGSSASXXXXXXXXXXXXXXSVLSFPLTSTVLSTTRFMNWSNPRSVPITTRFAFILI 425
DL TGS AS SVLS PLTSTVLSTTRFMN S PR VP T A LI
Sbjct: 354 DLPTGSRASTVTMLFPLITTIPMSVLSSPLTSTVLSTTRFMN*SKPRRVPTTILLALSLI 175
Query: 426 *SFLSMYFLRSGGCPERLMVTAT*PRTRERKGFASS 533
SFLSMYFLRSGG P+RL++ + E GF S+
Sbjct: 174 WSFLSMYFLRSGG*PDRLILAESEKTKNESLGFFSA 67
>ref|NM_111983.4| Arabidopsis thaliana unknown protein AT3G11500 mRNA, complete cds
Length = 575
Score = 174 bits (374), Expect = 3e-042
Identities = 71/82 (86%), Positives = 79/82 (96%)
Frame = -3 / +2
Query: 490 AVTMSRSGQPPDLKKYMDKKLQIKMNANRVVIGTLRGFDQFMNLVVDNTVEVNGNDKTDI 311
+ +MSRSGQPPDLKKYMDKKLQIK+NANR+V+GTLRGFDQFMNLVVDNTVEVNG+DKTDI
Sbjct: 110 SASMSRSGQPPDLKKYMDKKLQIKLNANRMVVGTLRGFDQFMNLVVDNTVEVNGDDKTDI 289
Query: 310 GMVVIRGNSVVMIEALEPVARS 245
GMVVIRGNS+V +EALEPV RS
Sbjct: 290 GMVVIRGNSIVTVEALEPVGRS 355
Score = 102 bits (218), Expect = 9e-021
Identities = 53/96 (55%), Positives = 58/96 (60%)
Frame = +3 / -3
Query: 246 DLATGSSASXXXXXXXXXXXXXXSVLSFPLTSTVLSTTRFMNWSNPRSVPITTRFAFILI 425
DL TGS AS SVLS PLTSTVLSTTRFMN S PR VP T A LI
Sbjct: 354 DLPTGSRASTVTMLFPLITTIPMSVLSSPLTSTVLSTTRFMN*SKPRRVPTTILLALSLI 175
Query: 426 *SFLSMYFLRSGGCPERLMVTAT*PRTRERKGFASS 533
SFLSMYFLRSGG P+RL++ + E GF S+
Sbjct: 174 WSFLSMYFLRSGG*PDRLILAESEKTKNESLGFFSA 67
>gb|BP802121.1|BP802121 BP802121 RAFL14 Arabidopsis thaliana cDNA clone RAFL23-23-A06 5',
mRNA sequence
Length = 359
Score = 174 bits (374), Expect = 3e-042
Identities = 71/82 (86%), Positives = 79/82 (96%)
Frame = -3 / +2
Query: 490 AVTMSRSGQPPDLKKYMDKKLQIKMNANRVVIGTLRGFDQFMNLVVDNTVEVNGNDKTDI 311
+ +MSRSGQPPDLKKYMDKKLQIK+NANR+V+GTLRGFDQFMNLVVDNTVEVNG+DKTDI
Sbjct: 86 SASMSRSGQPPDLKKYMDKKLQIKLNANRMVVGTLRGFDQFMNLVVDNTVEVNGDDKTDI 265
Query: 310 GMVVIRGNSVVMIEALEPVARS 245
GMVVIRGNS+V +EALEPV RS
Sbjct: 266 GMVVIRGNSIVTVEALEPVGRS 331
Score = 102 bits (218), Expect = 9e-021
Identities = 53/96 (55%), Positives = 58/96 (60%)
Frame = +3 / -3
Query: 246 DLATGSSASXXXXXXXXXXXXXXSVLSFPLTSTVLSTTRFMNWSNPRSVPITTRFAFILI 425
DL TGS AS SVLS PLTSTVLSTTRFMN S PR VP T A LI
Sbjct: 330 DLPTGSRASTVTMLFPLITTIPMSVLSSPLTSTVLSTTRFMN*SKPRRVPTTILLALSLI 151
Query: 426 *SFLSMYFLRSGGCPERLMVTAT*PRTRERKGFASS 533
SFLSMYFLRSGG P+RL++ + E GF S+
Sbjct: 150 WSFLSMYFLRSGG*PDRLILAESEKTKNESLGFFSA 43
>gb|BP865594.1|BP865594 BP865594 RAFL21 Arabidopsis thaliana cDNA clone RAFL21-74-M05 5',
mRNA sequence
Length = 371
Score = 174 bits (374), Expect = 3e-042
Identities = 71/82 (86%), Positives = 79/82 (96%)
Frame = -3 / +1
Query: 490 AVTMSRSGQPPDLKKYMDKKLQIKMNANRVVIGTLRGFDQFMNLVVDNTVEVNGNDKTDI 311
+ +MSRSGQPPDLKKYMDKKLQIK+NANR+V+GTLRGFDQFMNLVVDNTVEVNG+DKTDI
Sbjct: 124 SASMSRSGQPPDLKKYMDKKLQIKLNANRMVVGTLRGFDQFMNLVVDNTVEVNGDDKTDI 303
Query: 310 GMVVIRGNSVVMIEALEPVARS 245
GMVVIRGNS+V +EALEPV RS
Sbjct: 304 GMVVIRGNSIVTVEALEPVGRS 369
Score = 102 bits (218), Expect = 9e-021
Identities = 53/96 (55%), Positives = 58/96 (60%)
Frame = +3 / -1
Query: 246 DLATGSSASXXXXXXXXXXXXXXSVLSFPLTSTVLSTTRFMNWSNPRSVPITTRFAFILI 425
DL TGS AS SVLS PLTSTVLSTTRFMN S PR VP T A LI
Sbjct: 368 DLPTGSRASTVTMLFPLITTIPMSVLSSPLTSTVLSTTRFMN*SKPRRVPTTILLALSLI 189
Query: 426 *SFLSMYFLRSGGCPERLMVTAT*PRTRERKGFASS 533
SFLSMYFLRSGG P+RL++ + E GF S+
Sbjct: 188 WSFLSMYFLRSGG*PDRLILAESEKTKNESLGFFSA 81
>gb|BT006498.1| Arabidopsis thaliana At2g23930 gene, complete cds
Length = 243
Score = 174 bits (374), Expect = 3e-042
Identities = 73/81 (90%), Positives = 77/81 (95%)
Frame = -3 / +1
Query: 481 MSRSGQPPDLKKYMDKKLQIKMNANRVVIGTLRGFDQFMNLVVDNTVEVNGNDKTDIGMV 302
MSRSGQPPDLKKYMDKKLQIK+NANR+V GTLRGFDQFMNLVVDNTVEVNGNDKTDIGMV
Sbjct: 1 MSRSGQPPDLKKYMDKKLQIKLNANRMVTGTLRGFDQFMNLVVDNTVEVNGNDKTDIGMV 180
Query: 301 VIRGNSVVMIEALEPVARSQ* 239
VIRGNS+V +EALEPV RS *
Sbjct: 181 VIRGNSIVTVEALEPVGRSS* 243
Score = 105 bits (224), Expect = 1e-021
Identities = 51/78 (65%), Positives = 52/78 (66%)
Frame = +3 / -2
Query: 246 DLATGSSASXXXXXXXXXXXXXXSVLSFPLTSTVLSTTRFMNWSNPRSVPITTRFAFILI 425
DL TGS AS SVLS P TSTVLSTTRFMN SNPR VP+T R A LI
Sbjct: 236 DLPTGSRASTVTMLFPLITTIPMSVLSLPFTSTVLSTTRFMN*SNPRRVPVTIRLALSLI 57
Query: 426 *SFLSMYFLRSGGCPERL 479
SFLSMYFLRSGG PERL
Sbjct: 56 WSFLSMYFLRSGG*PERL 3
>gb|BT001203.1| Arabidopsis thaliana putative small nuclear ribonucleoprotein
polypeptide G (At3g11500) mRNA, complete cds
Length = 389
Score = 173 bits (372), Expect = 5e-042
Identities = 71/79 (89%), Positives = 77/79 (97%)
Frame = -3 / +1
Query: 481 MSRSGQPPDLKKYMDKKLQIKMNANRVVIGTLRGFDQFMNLVVDNTVEVNGNDKTDIGMV 302
MSRSGQPPDLKKYMDKKLQIK+NANR+V+GTLRGFDQFMNLVVDNTVEVNG+DKTDIGMV
Sbjct: 1 MSRSGQPPDLKKYMDKKLQIKLNANRMVVGTLRGFDQFMNLVVDNTVEVNGDDKTDIGMV 180
Query: 301 VIRGNSVVMIEALEPVARS 245
VIRGNS+V +EALEPV RS
Sbjct: 181 VIRGNSIVTVEALEPVGRS 237
>emb|BX825320.1|CNS0A7PN Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTSIL29ZB11 of Silique of strain col-0 of Arabidopsis
thaliana (thale cress)
Length = 557
Score = 172 bits (371), Expect = 7e-042
Identities = 70/82 (85%), Positives = 79/82 (96%)
Frame = -3 / +2
Query: 490 AVTMSRSGQPPDLKKYMDKKLQIKMNANRVVIGTLRGFDQFMNLVVDNTVEVNGNDKTDI 311
+ +M+RSGQPPDLKKYMDKKLQIK+NANR+V+GTLRGFDQFMNLVVDNTVEVNG+DKTDI
Sbjct: 95 SASMNRSGQPPDLKKYMDKKLQIKLNANRMVVGTLRGFDQFMNLVVDNTVEVNGDDKTDI 274
Query: 310 GMVVIRGNSVVMIEALEPVARS 245
GMVVIRGNS+V +EALEPV RS
Sbjct: 275 GMVVIRGNSIVTVEALEPVGRS 340
>gb|BP653691.1|BP653691 BP653691 RAFL19 Arabidopsis thaliana cDNA clone RAFL19-14-O07 3',
mRNA sequence
Length = 404
Score = 170 bits (365), Expect = 5e-041
Identities = 69/79 (87%), Positives = 77/79 (97%)
Frame = -3 / -3
Query: 490 AVTMSRSGQPPDLKKYMDKKLQIKMNANRVVIGTLRGFDQFMNLVVDNTVEVNGNDKTDI 311
+ +MSRSGQPPDLKKYMDKKLQIK+NANR+V+GTLRGFDQFMNLVVDNTVEVNG+DKTDI
Sbjct: 366 SASMSRSGQPPDLKKYMDKKLQIKLNANRMVVGTLRGFDQFMNLVVDNTVEVNGDDKTDI 187
Query: 310 GMVVIRGNSVVMIEALEPV 254
GMVVIRGNS+V +EALEPV
Sbjct: 186 GMVVIRGNSIVTVEALEPV 130
>gb|BP866681.1|BP866681 BP866681 RAFL21 Arabidopsis thaliana cDNA clone RAFL21-78-I22 5',
mRNA sequence
Length = 391
Score = 168 bits (361), Expect = 2e-040
Identities = 68/78 (87%), Positives = 76/78 (97%)
Frame = -3 / +2
Query: 490 AVTMSRSGQPPDLKKYMDKKLQIKMNANRVVIGTLRGFDQFMNLVVDNTVEVNGNDKTDI 311
+ +MSRSGQPPDLKKYMDKKLQIK+NANR+V+GTLRGFDQFMNLVVDNTVEVNG+DKTDI
Sbjct: 89 SASMSRSGQPPDLKKYMDKKLQIKLNANRMVVGTLRGFDQFMNLVVDNTVEVNGDDKTDI 268
Query: 310 GMVVIRGNSVVMIEALEP 257
GMVVIRGNS+V +EALEP
Sbjct: 269 GMVVIRGNSIVTVEALEP 322
>gb|BP859350.1|BP859350 BP859350 RAFL21 Arabidopsis thaliana cDNA clone RAFL25-40-F24 5',
mRNA sequence
Length = 392
Score = 127 bits (272), Expect(2) = 1e-034
Identities = 51/56 (91%), Positives = 56/56 (100%)
Frame = -3 / +2
Query: 484 TMSRSGQPPDLKKYMDKKLQIKMNANRVVIGTLRGFDQFMNLVVDNTVEVNGNDKT 317
+MSRSGQPPDLKKYMDKKLQIK+NANR+V+GTLRGFDQFMNLVVDNTVEVNG+DKT
Sbjct: 74 SMSRSGQPPDLKKYMDKKLQIKLNANRMVVGTLRGFDQFMNLVVDNTVEVNGDDKT 241
Score = 40.9 bits (83), Expect(2) = 1e-034
Identities = 17/21 (80%), Positives = 19/21 (90%)
Frame = -3 / +3
Query: 322 KTDIGMVVIRGNSVVMIEALE 260
K DIGMVVIRGNS+V +EALE
Sbjct: 237 KPDIGMVVIRGNSLVTVEALE 299
>gb|AV532322.1|AV532322 AV532322 Arabidopsis thaliana flower buds Columbia Arabidopsis
thaliana cDNA clone FB040b12F 3', mRNA sequence
Length = 412
Score = 143 bits (307), Expect = 5e-033
Identities = 59/70 (84%), Positives = 66/70 (94%)
Frame = -3 / -1
Query: 439 DKKLQIKMNANRVVIGTLRGFDQFMNLVVDNTVEVNGNDKTDIGMVVIRGNSVVMIEALE 260
DKKLQIK+NANR+V GTLRGFDQFMNLVVDNTVEVNGNDKTDIGMVVIRGNS+V +EALE
Sbjct: 412 DKKLQIKLNANRMVTGTLRGFDQFMNLVVDNTVEVNGNDKTDIGMVVIRGNSIVTVEALE 233
Query: 259 PVARSQ*IIV 230
PV RS *+++
Sbjct: 232 PVGRSS*LVI 203
>gb|BE662730.1|BE662730 EST00251 Arabidopsis Acute Ozone Reverse-Subtracted Library
Arabidopsis thaliana cDNA clone AtAOzHA7 similar to
small nuclear ribosomal protein E, mRNA sequence
Length = 263
Score = 142 bits (305), Expect = 9e-033
Identities = 59/68 (86%), Positives = 64/68 (94%)
Frame = -3 / -2
Query: 448 KYMDKKLQIKMNANRVVIGTLRGFDQFMNLVVDNTVEVNGNDKTDIGMVVIRGNSVVMIE 269
+YMDKKLQIK+NANR+V GTLRGFDQFMNLVVDNTVEVNGNDKTDI MVVIRGNS+V +E
Sbjct: 244 RYMDKKLQIKLNANRMVTGTLRGFDQFMNLVVDNTVEVNGNDKTDIXMVVIRGNSIVTVE 65
Query: 268 ALEPVARS 245
ALEPV RS
Sbjct: 64 ALEPVGRS 41
>gb|AA597812.1|AA597812 29879 Lambda-PRL2 Arabidopsis thaliana cDNA clone 244N10T7, mRNA
sequence
Length = 379
Score = 137 bits (294), Expect = 3e-031
Identities = 57/69 (82%), Positives = 64/69 (92%)
Frame = -3 / +3
Query: 436 KKLQIKMNANRVVIGTLRGFDQFMNLVVDNTVEVNGNDKTDIGMVVIRGNSVVMIEALEP 257
KKLQIK+NANR+V GTLRGF QFMNLVVDNTVEVNGNDKTDIGMVVIRGNS+V +EALEP
Sbjct: 3 KKLQIKLNANRMVTGTLRGFXQFMNLVVDNTVEVNGNDKTDIGMVVIRGNSIVTVEALEP 182
Query: 256 VARSQ*IIV 230
V RS *+++
Sbjct: 183 VGRSS*LVI 209
>gb|BP671940.1|BP671940 BP671940 RAFL21 Arabidopsis thaliana cDNA clone RAFL21-42-F17 3',
mRNA sequence
Length = 416
Score = 100 bits (212), Expect(2) = 2e-028
Identities = 41/48 (85%), Positives = 46/48 (95%)
Frame = -3 / -1
Query: 373 QFMNLVVDNTVEVNGNDKTDIGMVVIRGNSVVMIEALEPVARSQ*IIV 230
QFMNLVVDNTVEVNGNDKTDIGMVVIRGNS+V +EALEPVARS *+++
Sbjct: 347 QFMNLVVDNTVEVNGNDKTDIGMVVIRGNSIVTVEALEPVARSS*LVI 204
Score = 47.8 bits (98), Expect(2) = 2e-028
Identities = 19/22 (86%), Positives = 21/22 (95%)
Frame = -3 / -2
Query: 442 MDKKLQIKMNANRVVIGTLRGF 377
MDKKLQIK+NANR+V GTLRGF
Sbjct: 415 MDKKLQIKLNANRMVTGTLRGF 350
>gb|AC005170.3| Arabidopsis thaliana chromosome 2 clone T29E15 map CIC06C07, complete
sequence
Length = 108056
Score = 94.5 bits (200), Expect(2) = 5e-025
Identities = 38/42 (90%), Positives = 41/42 (97%)
Frame = -3 / +3
Query: 424 IKMNANRVVIGTLRGFDQFMNLVVDNTVEVNGNDKTDIGMVV 299
+K+NANR+V GTLRGFDQFMNLVVDNTVEVNGNDKTDIGMVV
Sbjct: 45852 VKLNANRMVTGTLRGFDQFMNLVVDNTVEVNGNDKTDIGMVV 45977
Score = 41.8 bits (85), Expect(2) = 5e-025
Identities = 16/24 (66%), Positives = 21/24 (87%)
Frame = -3 / +3
Query: 301 VIRGNSVVMIEALEPVARSQ*IIV 230
VIRGNS+V +EALEPV RS *+++
Sbjct: 46056 VIRGNSIVTVEALEPVGRSS*LVI 46127
>gb|B68003.1|B68003 T23O17TR.1 TAMU Arabidopsis thaliana genomic clone T23O17, DNA
sequence
Length = 544
Score = 93.2 bits (197), Expect(2) = 1e-024
Identities = 38/41 (92%), Positives = 40/41 (97%)
Frame = -3 / +2
Query: 421 KMNANRVVIGTLRGFDQFMNLVVDNTVEVNGNDKTDIGMVV 299
K+NANR+V GTLRGFDQFMNLVVDNTVEVNGNDKTDIGMVV
Sbjct: 2 KLNANRMVTGTLRGFDQFMNLVVDNTVEVNGNDKTDIGMVV 124
Score = 41.8 bits (85), Expect(2) = 1e-024
Identities = 16/24 (66%), Positives = 21/24 (87%)
Frame = -3 / +2
Query: 301 VIRGNSVVMIEALEPVARSQ*IIV 230
VIRGNS+V +EALEPV RS *+++
Sbjct: 203 VIRGNSIVTVEALEPVGRSS*LVI 274
>gb|B29014.1|B29014 T23O17TR TAMU Arabidopsis thaliana genomic clone T23O17, DNA
sequence
Length = 467
Score = 93.2 bits (197), Expect(2) = 1e-024
Identities = 38/41 (92%), Positives = 40/41 (97%)
Frame = -3 / +2
Query: 421 KMNANRVVIGTLRGFDQFMNLVVDNTVEVNGNDKTDIGMVV 299
K+NANR+V GTLRGFDQFMNLVVDNTVEVNGNDKTDIGMVV
Sbjct: 2 KLNANRMVTGTLRGFDQFMNLVVDNTVEVNGNDKTDIGMVV 124
Score = 41.8 bits (85), Expect(2) = 1e-024
Identities = 16/24 (66%), Positives = 21/24 (87%)
Frame = -3 / +2
Query: 301 VIRGNSVVMIEALEPVARSQ*IIV 230
VIRGNS+V +EALEPV RS *+++
Sbjct: 203 VIRGNSIVTVEALEPVGRSS*LVI 274
>gb|AC008153.5|AC008153 Arabidopsis thaliana chromosome 3 BAC F24K9 genomic sequence, complete
sequence
Length = 117296
Score = 94.1 bits (199), Expect(2) = 4e-024
Identities = 37/42 (88%), Positives = 42/42 (100%)
Frame = -3 / -3
Query: 424 IKMNANRVVIGTLRGFDQFMNLVVDNTVEVNGNDKTDIGMVV 299
+K+NANR+V+GTLRGFDQFMNLVVDNTVEVNG+DKTDIGMVV
Sbjct: 64431 VKLNANRMVVGTLRGFDQFMNLVVDNTVEVNGDDKTDIGMVV 64306
Score = 39.1 bits (79), Expect(2) = 4e-024
Identities = 16/21 (76%), Positives = 18/21 (85%)
Frame = -3 / -1
Query: 307 MVVIRGNSVVMIEALEPVARS 245
M VIRGNS+V +EALEPV RS
Sbjct: 64226 MQVIRGNSIVTVEALEPVGRS 64164
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 1,165,582,153
Number of Sequences: 1013581
Number of extensions: 15611903
Number of successful extensions: 139966
Number of sequences better than 1.0e-020: 37
length of database: 302,980,290
effective HSP length: 55
effective length of database: 247,233,335
effective search space used: 37332233585
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)