TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 1724818.2.1
(1089 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AC002131.1|F12F1 Arabidopsis thaliana chromosome 1 BAC F... 249 1e-083
gb|AY026364.1| Arabidopsis thaliana leucine-rich repeat/ext... 249 1e-083
ref|NM_101076.1| Arabidopsis thaliana LRX1 (LEUCINE-RICH RE... 249 1e-083
emb|AX507988.1| Sequence 2683 from Patent WO0216655 249 1e-083
gb|AC005698.1|AC005698 Genomic sequence for Arabidopsis tha... 243 8e-082
gb|AC003113.2|AC003113 Genomic sequence for Arabidopsis tha... 243 8e-082
ref|NM_104924.1| Arabidopsis thaliana LRX2 (LEUCINE-RICH RE... 243 9e-082
emb|AX507698.1| Sequence 2393 from Patent WO0216655 243 9e-082
emb|AL161572.2|ATCHRIV68 Arabidopsis thaliana DNA chromosom... 247 2e-077
emb|AL021749.1|ATF20O9 Arabidopsis thaliana DNA chromosome ... 247 2e-077
ref|NM_118978.2| Arabidopsis thaliana ubiquitin-protein lig... 247 2e-077
gb|AY096640.1| Arabidopsis thaliana At4g28370 mRNA sequence 247 2e-077
ref|NM_118979.1| Arabidopsis thaliana protein binding AT4G2... 247 2e-077
emb|AJ270060.1| Arabidopsis thaliana DNA chromosome 4, long... 247 2e-076
gb|AC006601.1|AC006601 Arabidopsis thaliana chromosome V ma... 248 4e-074
gb|DQ056690.1| Arabidopsis thaliana leucine-rich repeat fam... 248 4e-074
ref|NM_122466.1| Arabidopsis thaliana protein binding AT5G2... 248 4e-074
gb|AE005172.1| Arabidopsis thaliana chromosome 1, top arm c... 249 8e-074
gb|AE005173.1| Arabidopsis thaliana chromosome 1, bottom ar... 243 1e-071
ref|NM_117407.2| Arabidopsis thaliana unknown protein AT4G1... 131 7e-070
emb|AX506996.1| Sequence 1691 from Patent WO0216655 131 7e-070
emb|AL161536.2|ATCHRIV36 Arabidopsis thaliana DNA chromosom... 131 7e-070
emb|AL049608.1|ATT9E8 Arabidopsis thaliana DNA chromosome 4... 131 7e-070
ref|NM_117983.2| Arabidopsis thaliana protein binding AT4G1... 136 3e-069
emb|AL161549.2|ATCHRIV49 Arabidopsis thaliana DNA chromosom... 136 3e-069
emb|AL035526.1|ATF28A21 Arabidopsis thaliana DNA chromosome... 136 4e-069
gb|G72110.1|G72110 At-8.5BJ-540 Arabidopsis genomic DNA (B.... 249 7e-069
gb|AC007504.3| Arabidopsis thaliana chromosome I BAC F13F21... 154 2e-068
gb|AC006438.4| Arabidopsis thaliana chromosome 2 clone F19G... 157 2e-068
ref|NM_103837.1| Arabidopsis thaliana structural constituen... 154 2e-068
ref|NM_127148.1| Arabidopsis thaliana structural constituen... 157 2e-068
dbj|AP002048.1| Arabidopsis thaliana genomic DNA, chromosom... 128 8e-068
ref|NM_113355.1| Arabidopsis thaliana protein binding AT3G2... 128 9e-068
emb|AL161584.2|ATCHRIV80 Arabidopsis thaliana DNA chromosom... 133 2e-067
emb|AL031032.1|ATF17I5 Arabidopsis thaliana DNA chromosome ... 133 2e-067
ref|NM_119558.1| Arabidopsis thaliana protein binding AT4G3... 133 2e-067
dbj|AP000735.1| Arabidopsis thaliana genomic DNA, chromosom... 160 3e-067
ref|NM_112788.2| Arabidopsis thaliana protein binding / str... 160 3e-067
gb|AY091043.1| Arabidopsis thaliana unknown protein (At3g19... 160 3e-067
gb|BX841161.1|BX841161 BX841161 Arabidopsis thaliana Flower... 111 8e-067
dbj|AB022223.1| Arabidopsis thaliana genomic DNA, chromosom... 111 2e-066
ref|NM_113179.3| Arabidopsis thaliana protein binding / str... 111 2e-066
ref|NC_003070.5| Arabidopsis thaliana chromosome 1, complet... 249 1e-064
dbj|BA000015.5| Arabidopsis thaliana DNA, chromosome 5, com... 248 2e-064
ref|NC_003076.4| Arabidopsis thaliana chromosome 5, complet... 248 2e-064
ref|NC_003075.3| Arabidopsis thaliana chromosome 4, complet... 247 4e-064
gb|CW798893.1|CW798893 WiscDsLox317F03 Arabidopsis thaliana... 157 3e-059
emb|BX824256.1|CNS0A7QT Arabidopsis thaliana Full-length cD... 103 4e-058
emb|AL161574.2|ATCHRIV70 Arabidopsis thaliana DNA chromosom... 204 8e-058
emb|AL096692.1|F17A13 Arabidopsis thaliana clone F17A13, **... 204 8e-058
ref|NM_119068.2| Arabidopsis thaliana protein binding AT4G2... 204 8e-058
gb|AY091036.1| Arabidopsis thaliana putative extensin (At4g... 204 8e-058
gb|AY085352.1| Arabidopsis thaliana clone 147694 mRNA, comp... 204 8e-058
gb|AY117248.1| Arabidopsis thaliana putative extensin (At4g... 204 8e-058
gb|BX839037.1|BX839037 BX839037 Arabidopsis thaliana Adult ... 136 2e-055
gb|AC005169.3| Arabidopsis thaliana chromosome 2 clone F6F2... 185 3e-055
gb|BT004135.1| Arabidopsis thaliana clone RAFL15-20-F01 (R2... 185 3e-055
ref|NM_127536.2| Arabidopsis thaliana protein binding AT2G1... 185 3e-055
gb|BT005020.1| Arabidopsis thaliana clone U20712 putative d... 185 3e-055
emb|BX818896.1|CNS0A9TN Arabidopsis thaliana Full-length cD... 116 7e-051
ref|NC_003074.4| Arabidopsis thaliana chromosome 3, complet... 160 8e-049
dbj|BA000014.8| Arabidopsis thaliana, chromosome 3, complet... 160 8e-049
ref|NC_003071.3| Arabidopsis thaliana chromosome 2, complet... 185 3e-045
gb|BX839831.1|BX839831 BX839831 Arabidopsis thaliana Hormon... 61 2e-043
gb|BT011626.1| Arabidopsis thaliana At1g49750 mRNA, complet... 94 3e-037
ref|NM_103862.2| Arabidopsis thaliana unknown protein AT1G4... 94 3e-037
gb|BT012269.1| Arabidopsis thaliana At1g49750 gene, complet... 94 3e-037
gb|BH169438.1|BH169438 SALK_001365 Arabidopsis thaliana TDN... 86 1e-036
gb|AV529565.1|AV529565 AV529565 Arabidopsis thaliana aboveg... 77 3e-036
ref|NM_112819.1| Arabidopsis thaliana protein binding AT3G1... 94 7e-036
gb|CC883471.1|CC883471 SALK_094400.48.50.x Arabidopsis thal... 128 9e-036
emb|BX815680.1|CNS0ADZF Arabidopsis thaliana Full-length cD... 88 3e-035
gb|BZ291504.1|BZ291504 SALK_120839.42.65.x Arabidopsis thal... 132 3e-034
gb|BH753506.1|BH753506 SALK_029225.55.25.x Arabidopsis thal... 148 4e-034
emb|AL086745.1|CNS00R7F Arabidopsis thaliana genome survey ... 131 2e-031
gb|AC011807.4|AC011807 Arabidopsis thaliana chromosome I BA... 85 3e-031
emb|CR395125.1| Arabidopsis thaliana T-DNA flanking sequenc... 94 2e-030
dbj|AB025624.1| Arabidopsis thaliana genomic DNA, chromosom... 83 4e-029
gb|AV546157.1|AV546157 AV546157 Arabidopsis thaliana roots ... 70 1e-028
emb|CR395124.1| Arabidopsis thaliana T-DNA flanking sequenc... 94 2e-028
ref|NM_179008.1| Arabidopsis thaliana protein binding AT4G0... 107 4e-028
gb|AQ957841.1|AQ957841 LERAS02TF LERA Arabidopsis thaliana ... 88 2e-026
emb|BX533459.1| Arabidopsis thaliana T-DNA flanking sequenc... 119 1e-025
dbj|AB073166.1| Arabidopsis thaliana DNA, chromosome 4 cent... 107 2e-024
gb|BZ291500.1|BZ291500 SALK_120835.35.90.x Arabidopsis thal... 100 5e-022
gb|AV554474.1|AV554474 AV554474 Arabidopsis thaliana roots ... 107 7e-022
gb|BZ384829.1|BZ384829 SALK_136073.42.70.x Arabidopsis thal... 73 7e-022
>gb|AC002131.1|F12F1 Arabidopsis thaliana chromosome 1 BAC F12F1 sequence, complete sequence
Length = 123386
Score = 249 bits (538), Expect(3) = 1e-083
Identities = 100/157 (63%), Positives = 123/157 (78%)
Frame = +3 / -1
Query: 516 SNNRFVGAFPAVVLALPSLRYLDLRFNDFEGPIPPPLFDRPLDAILLNSNRLRGPIPANL 695
SNNRFVG FP VVL+LPSL++LDLR+N+FEG IP LFDR LDAI LN NR R IP N+
Sbjct: 44003 SNNRFVGKFPKVVLSLPSLKFLDLRYNEFEGKIPSKLFDRELDAIFLNHNRFRFGIPKNM 43824
Query: 696 GNSPASVLVLAHNRLGGCIPPSIGRMAATLNEIVLIDDDLTGCVPPQVGLLTKLTVFDVS 875
GNSP S LVLA N LGGCIP SIG+M TLNE++L +D+LTGC+PPQ+G L K+TVFD++
Sbjct: 43823 GNSPVSALVLADNNLGGCIPGSIGQMGKTLNELILSNDNLTGCLPPQIGNLKKVTVFDIT 43644
Query: 876 GNHLQGPLPPAVGGMAVLQQLNVAGNLLRGPVPSAVC 986
N LQGPLP +VG M L++L+VA N G +P ++C
Sbjct: 43643 SNRLQGPLPSSVGNMKSLEELHVANNAFTGVIPPSIC 43533
Score = 87.7 bits (185), Expect(3) = 7e-030
Identities = 48/110 (43%), Positives = 58/110 (52%)
Frame = -3 / +1
Query: 973 GTGPLSRFPATLSCWRTAIPPTAGGSGP*RWLPLTSNTVSFVSRPTCGGTQPVRSSSMRT 794
G P+ AT S R + PT G+GP R + S TV+F+ P GG QPV+ S R
Sbjct: 43546 GITPVKALLAT*SSSRLFMLPTLDGNGPCRRFEVMSKTVTFLRFPI*GGKQPVKLSLERI 43725
Query: 793 ISLSVAAILPIDGGMQPPRRLCASTSTEAGELPRLAGMGPRRRLELRRMA 644
SLSV I PI GM PPR L A T E GE P G+ R RL + +A
Sbjct: 43726 SSLSVFPI*PILPGMHPPRLLSARTRAETGEFPMFLGIPNRNRLWFKNIA 43875
Score = 68.4 bits (143), Expect(3) = 1e-083
Identities = 24/33 (72%), Positives = 28/33 (84%)
Frame = +1 / -1
Query: 238 RTAIFSDPSNFTSNWAGPNVCAYNGIYCAPRPS 336
+ AIFSDP NFT+NW G +VC+YNGIYCAP PS
Sbjct: 44282 KKAIFSDPFNFTANWNGSDVCSYNGIYCAPSPS 44184
Score = 41.8 bits (85), Expect(3) = 7e-030
Identities = 20/31 (64%), Positives = 22/31 (70%)
Frame = -2 / +1
Query: 335 EGRGAQ*MPLYAHTLGPAQLEVKLDGSEKMA 243
EG GAQ*+PL T P QL VKL GSEK+A
Sbjct: 44185 EGEGAQ*IPL*EQTSEPFQLAVKLKGSEKIA 44277
Score = 41.8 bits (85), Expect(3) = 7e-030
Identities = 19/49 (38%), Positives = 23/49 (46%)
Frame = -3 / +1
Query: 568 EGSASTTAGKAPTKXXXXXXXXXXXXXXXSVSGSTPQKRLELRWSSARS 422
EG TT G PT +V G++PQKR EL W+ ARS
Sbjct: 43951 EGKERTTLGNLPTNRLLLRSSS*RSFMRLNVRGTSPQKRFELMWNRARS 44097
Score = 35.0 bits (70), Expect(3) = 1e-083
Identities = 12/14 (85%), Positives = 13/14 (92%)
Frame = +3 / -1
Query: 423 DLALLHLNSNRFCG 464
DLAL H+NSNRFCG
Sbjct: 44096 DLALFHINSNRFCG 44055
>gb|AY026364.1| Arabidopsis thaliana leucine-rich repeat/extensin 1 (LRX1) mRNA,
complete cds
Length = 2444
Score = 249 bits (538), Expect(3) = 1e-083
Identities = 100/157 (63%), Positives = 123/157 (78%)
Frame = +3 / +1
Query: 516 SNNRFVGAFPAVVLALPSLRYLDLRFNDFEGPIPPPLFDRPLDAILLNSNRLRGPIPANL 695
SNNRFVG FP VVL+LPSL++LDLR+N+FEG IP LFDR LDAI LN NR R IP N+
Sbjct: 499 SNNRFVGKFPKVVLSLPSLKFLDLRYNEFEGKIPSKLFDRELDAIFLNHNRFRFGIPKNM 678
Query: 696 GNSPASVLVLAHNRLGGCIPPSIGRMAATLNEIVLIDDDLTGCVPPQVGLLTKLTVFDVS 875
GNSP S LVLA N LGGCIP SIG+M TLNE++L +D+LTGC+PPQ+G L K+TVFD++
Sbjct: 679 GNSPVSALVLADNNLGGCIPGSIGQMGKTLNELILSNDNLTGCLPPQIGNLKKVTVFDIT 858
Query: 876 GNHLQGPLPPAVGGMAVLQQLNVAGNLLRGPVPSAVC 986
N LQGPLP +VG M L++L+VA N G +P ++C
Sbjct: 859 SNRLQGPLPSSVGNMKSLEELHVANNAFTGVIPPSIC 969
Score = 87.7 bits (185), Expect(3) = 8e-030
Identities = 48/110 (43%), Positives = 58/110 (52%)
Frame = -3 / -1
Query: 973 GTGPLSRFPATLSCWRTAIPPTAGGSGP*RWLPLTSNTVSFVSRPTCGGTQPVRSSSMRT 794
G P+ AT S R + PT G+GP R + S TV+F+ P GG QPV+ S R
Sbjct: 956 GITPVKALLAT*SSSRLFMLPTLDGNGPCRRFEVMSKTVTFLRFPI*GGKQPVKLSLERI 777
Query: 793 ISLSVAAILPIDGGMQPPRRLCASTSTEAGELPRLAGMGPRRRLELRRMA 644
SLSV I PI GM PPR L A T E GE P G+ R RL + +A
Sbjct: 776 SSLSVFPI*PILPGMHPPRLLSARTRAETGEFPMFLGIPNRNRLWFKNIA 627
Score = 68.4 bits (143), Expect(3) = 1e-083
Identities = 24/33 (72%), Positives = 28/33 (84%)
Frame = +1 / +1
Query: 238 RTAIFSDPSNFTSNWAGPNVCAYNGIYCAPRPS 336
+ AIFSDP NFT+NW G +VC+YNGIYCAP PS
Sbjct: 220 KKAIFSDPFNFTANWNGSDVCSYNGIYCAPSPS 318
Score = 41.8 bits (85), Expect(3) = 8e-030
Identities = 20/31 (64%), Positives = 22/31 (70%)
Frame = -2 / -1
Query: 335 EGRGAQ*MPLYAHTLGPAQLEVKLDGSEKMA 243
EG GAQ*+PL T P QL VKL GSEK+A
Sbjct: 317 EGEGAQ*IPL*EQTSEPFQLAVKLKGSEKIA 225
Score = 41.8 bits (85), Expect(3) = 8e-030
Identities = 19/49 (38%), Positives = 23/49 (46%)
Frame = -3 / -1
Query: 568 EGSASTTAGKAPTKXXXXXXXXXXXXXXXSVSGSTPQKRLELRWSSARS 422
EG TT G PT +V G++PQKR EL W+ ARS
Sbjct: 551 EGKERTTLGNLPTNRLLLRSSS*RSFMRLNVRGTSPQKRFELMWNRARS 405
Score = 35.0 bits (70), Expect(3) = 1e-083
Identities = 12/14 (85%), Positives = 13/14 (92%)
Frame = +3 / +1
Query: 423 DLALLHLNSNRFCG 464
DLAL H+NSNRFCG
Sbjct: 406 DLALFHINSNRFCG 447
>ref|NM_101076.1| Arabidopsis thaliana LRX1 (LEUCINE-RICH REPEAT/EXTENSIN 1)
AT1G12040 (LRX1) mRNA, complete cds
Length = 2444
Score = 249 bits (538), Expect(3) = 1e-083
Identities = 100/157 (63%), Positives = 123/157 (78%)
Frame = +3 / +1
Query: 516 SNNRFVGAFPAVVLALPSLRYLDLRFNDFEGPIPPPLFDRPLDAILLNSNRLRGPIPANL 695
SNNRFVG FP VVL+LPSL++LDLR+N+FEG IP LFDR LDAI LN NR R IP N+
Sbjct: 499 SNNRFVGKFPKVVLSLPSLKFLDLRYNEFEGKIPSKLFDRELDAIFLNHNRFRFGIPKNM 678
Query: 696 GNSPASVLVLAHNRLGGCIPPSIGRMAATLNEIVLIDDDLTGCVPPQVGLLTKLTVFDVS 875
GNSP S LVLA N LGGCIP SIG+M TLNE++L +D+LTGC+PPQ+G L K+TVFD++
Sbjct: 679 GNSPVSALVLADNNLGGCIPGSIGQMGKTLNELILSNDNLTGCLPPQIGNLKKVTVFDIT 858
Query: 876 GNHLQGPLPPAVGGMAVLQQLNVAGNLLRGPVPSAVC 986
N LQGPLP +VG M L++L+VA N G +P ++C
Sbjct: 859 SNRLQGPLPSSVGNMKSLEELHVANNAFTGVIPPSIC 969
Score = 87.7 bits (185), Expect(3) = 8e-030
Identities = 48/110 (43%), Positives = 58/110 (52%)
Frame = -3 / -1
Query: 973 GTGPLSRFPATLSCWRTAIPPTAGGSGP*RWLPLTSNTVSFVSRPTCGGTQPVRSSSMRT 794
G P+ AT S R + PT G+GP R + S TV+F+ P GG QPV+ S R
Sbjct: 956 GITPVKALLAT*SSSRLFMLPTLDGNGPCRRFEVMSKTVTFLRFPI*GGKQPVKLSLERI 777
Query: 793 ISLSVAAILPIDGGMQPPRRLCASTSTEAGELPRLAGMGPRRRLELRRMA 644
SLSV I PI GM PPR L A T E GE P G+ R RL + +A
Sbjct: 776 SSLSVFPI*PILPGMHPPRLLSARTRAETGEFPMFLGIPNRNRLWFKNIA 627
Score = 68.4 bits (143), Expect(3) = 1e-083
Identities = 24/33 (72%), Positives = 28/33 (84%)
Frame = +1 / +1
Query: 238 RTAIFSDPSNFTSNWAGPNVCAYNGIYCAPRPS 336
+ AIFSDP NFT+NW G +VC+YNGIYCAP PS
Sbjct: 220 KKAIFSDPFNFTANWNGSDVCSYNGIYCAPSPS 318
Score = 41.8 bits (85), Expect(3) = 8e-030
Identities = 20/31 (64%), Positives = 22/31 (70%)
Frame = -2 / -1
Query: 335 EGRGAQ*MPLYAHTLGPAQLEVKLDGSEKMA 243
EG GAQ*+PL T P QL VKL GSEK+A
Sbjct: 317 EGEGAQ*IPL*EQTSEPFQLAVKLKGSEKIA 225
Score = 41.8 bits (85), Expect(3) = 8e-030
Identities = 19/49 (38%), Positives = 23/49 (46%)
Frame = -3 / -1
Query: 568 EGSASTTAGKAPTKXXXXXXXXXXXXXXXSVSGSTPQKRLELRWSSARS 422
EG TT G PT +V G++PQKR EL W+ ARS
Sbjct: 551 EGKERTTLGNLPTNRLLLRSSS*RSFMRLNVRGTSPQKRFELMWNRARS 405
Score = 35.0 bits (70), Expect(3) = 1e-083
Identities = 12/14 (85%), Positives = 13/14 (92%)
Frame = +3 / +1
Query: 423 DLALLHLNSNRFCG 464
DLAL H+NSNRFCG
Sbjct: 406 DLALFHINSNRFCG 447
>emb|AX507988.1| Sequence 2683 from Patent WO0216655
Length = 2235
Score = 249 bits (538), Expect(3) = 1e-083
Identities = 100/157 (63%), Positives = 123/157 (78%)
Frame = +3 / +1
Query: 516 SNNRFVGAFPAVVLALPSLRYLDLRFNDFEGPIPPPLFDRPLDAILLNSNRLRGPIPANL 695
SNNRFVG FP VVL+LPSL++LDLR+N+FEG IP LFDR LDAI LN NR R IP N+
Sbjct: 463 SNNRFVGKFPKVVLSLPSLKFLDLRYNEFEGKIPSKLFDRELDAIFLNHNRFRFGIPKNM 642
Query: 696 GNSPASVLVLAHNRLGGCIPPSIGRMAATLNEIVLIDDDLTGCVPPQVGLLTKLTVFDVS 875
GNSP S LVLA N LGGCIP SIG+M TLNE++L +D+LTGC+PPQ+G L K+TVFD++
Sbjct: 643 GNSPVSALVLADNNLGGCIPGSIGQMGKTLNELILSNDNLTGCLPPQIGNLKKVTVFDIT 822
Query: 876 GNHLQGPLPPAVGGMAVLQQLNVAGNLLRGPVPSAVC 986
N LQGPLP +VG M L++L+VA N G +P ++C
Sbjct: 823 SNRLQGPLPSSVGNMKSLEELHVANNAFTGVIPPSIC 933
Score = 87.7 bits (185), Expect(3) = 8e-030
Identities = 48/110 (43%), Positives = 58/110 (52%)
Frame = -3 / -2
Query: 973 GTGPLSRFPATLSCWRTAIPPTAGGSGP*RWLPLTSNTVSFVSRPTCGGTQPVRSSSMRT 794
G P+ AT S R + PT G+GP R + S TV+F+ P GG QPV+ S R
Sbjct: 920 GITPVKALLAT*SSSRLFMLPTLDGNGPCRRFEVMSKTVTFLRFPI*GGKQPVKLSLERI 741
Query: 793 ISLSVAAILPIDGGMQPPRRLCASTSTEAGELPRLAGMGPRRRLELRRMA 644
SLSV I PI GM PPR L A T E GE P G+ R RL + +A
Sbjct: 740 SSLSVFPI*PILPGMHPPRLLSARTRAETGEFPMFLGIPNRNRLWFKNIA 591
Score = 68.4 bits (143), Expect(3) = 1e-083
Identities = 24/33 (72%), Positives = 28/33 (84%)
Frame = +1 / +1
Query: 238 RTAIFSDPSNFTSNWAGPNVCAYNGIYCAPRPS 336
+ AIFSDP NFT+NW G +VC+YNGIYCAP PS
Sbjct: 184 KKAIFSDPFNFTANWNGSDVCSYNGIYCAPSPS 282
Score = 41.8 bits (85), Expect(3) = 8e-030
Identities = 20/31 (64%), Positives = 22/31 (70%)
Frame = -2 / -2
Query: 335 EGRGAQ*MPLYAHTLGPAQLEVKLDGSEKMA 243
EG GAQ*+PL T P QL VKL GSEK+A
Sbjct: 281 EGEGAQ*IPL*EQTSEPFQLAVKLKGSEKIA 189
Score = 41.8 bits (85), Expect(3) = 8e-030
Identities = 19/49 (38%), Positives = 23/49 (46%)
Frame = -3 / -2
Query: 568 EGSASTTAGKAPTKXXXXXXXXXXXXXXXSVSGSTPQKRLELRWSSARS 422
EG TT G PT +V G++PQKR EL W+ ARS
Sbjct: 515 EGKERTTLGNLPTNRLLLRSSS*RSFMRLNVRGTSPQKRFELMWNRARS 369
Score = 35.0 bits (70), Expect(3) = 1e-083
Identities = 12/14 (85%), Positives = 13/14 (92%)
Frame = +3 / +1
Query: 423 DLALLHLNSNRFCG 464
DLAL H+NSNRFCG
Sbjct: 370 DLALFHINSNRFCG 411
>gb|AC005698.1|AC005698 Genomic sequence for Arabidopsis thaliana BAC T3P18 from Chromosome
1, complete sequence
Length = 97054
Score = 243 bits (526), Expect(3) = 8e-082
Identities = 100/157 (63%), Positives = 120/157 (76%)
Frame = +3 / +3
Query: 516 SNNRFVGAFPAVVLALPSLRYLDLRFNDFEGPIPPPLFDRPLDAILLNSNRLRGPIPANL 695
SNNRFVG FP VVL+LPSL++LDLR+N+FEG IP LFD+ LDAI LN NR IP N+
Sbjct: 4389 SNNRFVGKFPNVVLSLPSLKFLDLRYNEFEGSIPSKLFDKELDAIFLNHNRFMFGIPENM 4568
Query: 696 GNSPASVLVLAHNRLGGCIPPSIGRMAATLNEIVLIDDDLTGCVPPQVGLLTKLTVFDVS 875
GNSP S LVLA N LGGCIP SIG M TLNEI+L +D+LTGC+PPQ+G L +TVFD+S
Sbjct: 4569 GNSPVSALVLADNDLGGCIPGSIGLMGKTLNEIILSNDNLTGCLPPQIGNLKNVTVFDIS 4748
Query: 876 GNHLQGPLPPAVGGMAVLQQLNVAGNLLRGPVPSAVC 986
N L GPLP ++G M L+QLNVA N G +PS++C
Sbjct: 4749 FNRLSGPLPSSIGNMKSLEQLNVANNRFTGVIPSSIC 4859
Score = 99.1 bits (210), Expect(4) = 8e-034
Identities = 49/110 (44%), Positives = 63/110 (57%)
Frame = -3 / -1
Query: 973 GTGPLSRFPATLSCWRTAIPPTAGGSGP*RWLPLTSNTVSFVSRPTCGGTQPVRSSSMRT 794
G P++ ATLSC + + P G+GP + L L S TV+F+ P CGG QPV+ S R
Sbjct: 4846 GITPVNLLLATLSCSKLFMFPMLDGNGPLKRLKLISKTVTFLRFPICGGKQPVKLSLERM 4667
Query: 793 ISLSVAAILPIDGGMQPPRRLCASTSTEAGELPRLAGMGPRRRLELRRMA 644
ISL V I PI GMQPPR L A T + GE P +G+ RL + +A
Sbjct: 4666 ISLRVFPIKPILPGMQPPRSLSARTRADTGEFPMFSGIPNINRLWFKNIA 4517
Score = 66.6 bits (139), Expect(3) = 8e-082
Identities = 23/33 (69%), Positives = 28/33 (84%)
Frame = +1 / +3
Query: 238 RTAIFSDPSNFTSNWAGPNVCAYNGIYCAPRPS 336
+ AIFSDP NFT+NW G +VC+YNGI+CAP PS
Sbjct: 4110 KQAIFSDPFNFTANWNGSDVCSYNGIFCAPSPS 4208
Score = 40.0 bits (81), Expect(4) = 8e-034
Identities = 20/49 (40%), Positives = 23/49 (46%)
Frame = -3 / -1
Query: 568 EGSASTTAGKAPTKXXXXXXXXXXXXXXXSVSGSTPQKRLELRWSSARS 422
EG TT G PTK +V G++PQKR ELR ARS
Sbjct: 4441 EGKDKTTLGNFPTKRLLLKSSSKRSFMCLNVRGTSPQKRFELR*KRARS 4295
Score = 39.6 bits (80), Expect(4) = 8e-034
Identities = 19/31 (61%), Positives = 21/31 (67%)
Frame = -2 / -1
Query: 335 EGRGAQ*MPLYAHTLGPAQLEVKLDGSEKMA 243
EG GAQ +PL T P QL VKL GSEK+A
Sbjct: 4207 EGEGAQKIPL*EQTSEPFQLAVKLKGSEKIA 4115
Score = 35.9 bits (72), Expect(3) = 8e-082
Identities = 13/14 (92%), Positives = 13/14 (92%)
Frame = +3 / +3
Query: 423 DLALLHLNSNRFCG 464
DLAL HLNSNRFCG
Sbjct: 4296 DLALFHLNSNRFCG 4337
Score = 23.5 bits (45), Expect(4) = 8e-034
Identities = 10/15 (66%), Positives = 10/15 (66%)
Frame = -3 / -1
Query: 412 RGRSAGMWPAMSAWL 368
R S G PAMSAWL
Sbjct: 4288 RPSSRGK*PAMSAWL 4244
>gb|AC003113.2|AC003113 Genomic sequence for Arabidopsis thaliana BAC F24O1 from chromosome I,
complete sequence
Length = 86372
Score = 243 bits (526), Expect(3) = 8e-082
Identities = 100/157 (63%), Positives = 120/157 (76%)
Frame = +3 / +1
Query: 516 SNNRFVGAFPAVVLALPSLRYLDLRFNDFEGPIPPPLFDRPLDAILLNSNRLRGPIPANL 695
SNNRFVG FP VVL+LPSL++LDLR+N+FEG IP LFD+ LDAI LN NR IP N+
Sbjct: 79798 SNNRFVGKFPNVVLSLPSLKFLDLRYNEFEGSIPSKLFDKELDAIFLNHNRFMFGIPENM 79977
Query: 696 GNSPASVLVLAHNRLGGCIPPSIGRMAATLNEIVLIDDDLTGCVPPQVGLLTKLTVFDVS 875
GNSP S LVLA N LGGCIP SIG M TLNEI+L +D+LTGC+PPQ+G L +TVFD+S
Sbjct: 79978 GNSPVSALVLADNDLGGCIPGSIGLMGKTLNEIILSNDNLTGCLPPQIGNLKNVTVFDIS 80157
Query: 876 GNHLQGPLPPAVGGMAVLQQLNVAGNLLRGPVPSAVC 986
N L GPLP ++G M L+QLNVA N G +PS++C
Sbjct: 80158 FNRLSGPLPSSIGNMKSLEQLNVANNRFTGVIPSSIC 80268
Score = 99.1 bits (210), Expect(4) = 8e-034
Identities = 49/110 (44%), Positives = 63/110 (57%)
Frame = -3 / -1
Query: 973 GTGPLSRFPATLSCWRTAIPPTAGGSGP*RWLPLTSNTVSFVSRPTCGGTQPVRSSSMRT 794
G P++ ATLSC + + P G+GP + L L S TV+F+ P CGG QPV+ S R
Sbjct: 80255 GITPVNLLLATLSCSKLFMFPMLDGNGPLKRLKLISKTVTFLRFPICGGKQPVKLSLERM 80076
Query: 793 ISLSVAAILPIDGGMQPPRRLCASTSTEAGELPRLAGMGPRRRLELRRMA 644
ISL V I PI GMQPPR L A T + GE P +G+ RL + +A
Sbjct: 80075 ISLRVFPIKPILPGMQPPRSLSARTRADTGEFPMFSGIPNINRLWFKNIA 79926
Score = 66.6 bits (139), Expect(3) = 8e-082
Identities = 23/33 (69%), Positives = 28/33 (84%)
Frame = +1 / +1
Query: 238 RTAIFSDPSNFTSNWAGPNVCAYNGIYCAPRPS 336
+ AIFSDP NFT+NW G +VC+YNGI+CAP PS
Sbjct: 79519 KQAIFSDPFNFTANWNGSDVCSYNGIFCAPSPS 79617
Score = 40.0 bits (81), Expect(4) = 8e-034
Identities = 20/49 (40%), Positives = 23/49 (46%)
Frame = -3 / -1
Query: 568 EGSASTTAGKAPTKXXXXXXXXXXXXXXXSVSGSTPQKRLELRWSSARS 422
EG TT G PTK +V G++PQKR ELR ARS
Sbjct: 79850 EGKDKTTLGNFPTKRLLLKSSSKRSFMCLNVRGTSPQKRFELR*KRARS 79704
Score = 39.6 bits (80), Expect(4) = 8e-034
Identities = 19/31 (61%), Positives = 21/31 (67%)
Frame = -2 / -1
Query: 335 EGRGAQ*MPLYAHTLGPAQLEVKLDGSEKMA 243
EG GAQ +PL T P QL VKL GSEK+A
Sbjct: 79616 EGEGAQKIPL*EQTSEPFQLAVKLKGSEKIA 79524
Score = 35.9 bits (72), Expect(3) = 8e-082
Identities = 13/14 (92%), Positives = 13/14 (92%)
Frame = +3 / +1
Query: 423 DLALLHLNSNRFCG 464
DLAL HLNSNRFCG
Sbjct: 79705 DLALFHLNSNRFCG 79746
Score = 23.5 bits (45), Expect(4) = 8e-034
Identities = 10/15 (66%), Positives = 10/15 (66%)
Frame = -3 / -1
Query: 412 RGRSAGMWPAMSAWL 368
R S G PAMSAWL
Sbjct: 79697 RPSSRGK*PAMSAWL 79653
>ref|NM_104924.1| Arabidopsis thaliana LRX2 (LEUCINE-RICH REPEAT/EXTENSIN 2);
structural constituent of cell wall AT1G62440 (LRX2)
mRNA, complete cds
Length = 2481
Score = 243 bits (526), Expect(3) = 9e-082
Identities = 100/157 (63%), Positives = 120/157 (76%)
Frame = +3 / +1
Query: 516 SNNRFVGAFPAVVLALPSLRYLDLRFNDFEGPIPPPLFDRPLDAILLNSNRLRGPIPANL 695
SNNRFVG FP VVL+LPSL++LDLR+N+FEG IP LFD+ LDAI LN NR IP N+
Sbjct: 589 SNNRFVGKFPNVVLSLPSLKFLDLRYNEFEGSIPSKLFDKELDAIFLNHNRFMFGIPENM 768
Query: 696 GNSPASVLVLAHNRLGGCIPPSIGRMAATLNEIVLIDDDLTGCVPPQVGLLTKLTVFDVS 875
GNSP S LVLA N LGGCIP SIG M TLNEI+L +D+LTGC+PPQ+G L +TVFD+S
Sbjct: 769 GNSPVSALVLADNDLGGCIPGSIGLMGKTLNEIILSNDNLTGCLPPQIGNLKNVTVFDIS 948
Query: 876 GNHLQGPLPPAVGGMAVLQQLNVAGNLLRGPVPSAVC 986
N L GPLP ++G M L+QLNVA N G +PS++C
Sbjct: 949 FNRLSGPLPSSIGNMKSLEQLNVANNRFTGVIPSSIC 1059
Score = 99.1 bits (210), Expect(4) = 9e-034
Identities = 49/110 (44%), Positives = 63/110 (57%)
Frame = -3 / -2
Query: 973 GTGPLSRFPATLSCWRTAIPPTAGGSGP*RWLPLTSNTVSFVSRPTCGGTQPVRSSSMRT 794
G P++ ATLSC + + P G+GP + L L S TV+F+ P CGG QPV+ S R
Sbjct: 1046 GITPVNLLLATLSCSKLFMFPMLDGNGPLKRLKLISKTVTFLRFPICGGKQPVKLSLERM 867
Query: 793 ISLSVAAILPIDGGMQPPRRLCASTSTEAGELPRLAGMGPRRRLELRRMA 644
ISL V I PI GMQPPR L A T + GE P +G+ RL + +A
Sbjct: 866 ISLRVFPIKPILPGMQPPRSLSARTRADTGEFPMFSGIPNINRLWFKNIA 717
Score = 66.6 bits (139), Expect(3) = 9e-082
Identities = 23/33 (69%), Positives = 28/33 (84%)
Frame = +1 / +1
Query: 238 RTAIFSDPSNFTSNWAGPNVCAYNGIYCAPRPS 336
+ AIFSDP NFT+NW G +VC+YNGI+CAP PS
Sbjct: 310 KQAIFSDPFNFTANWNGSDVCSYNGIFCAPSPS 408
Score = 40.0 bits (81), Expect(4) = 9e-034
Identities = 20/49 (40%), Positives = 23/49 (46%)
Frame = -3 / -2
Query: 568 EGSASTTAGKAPTKXXXXXXXXXXXXXXXSVSGSTPQKRLELRWSSARS 422
EG TT G PTK +V G++PQKR ELR ARS
Sbjct: 641 EGKDKTTLGNFPTKRLLLKSSSKRSFMCLNVRGTSPQKRFELR*KRARS 495
Score = 39.6 bits (80), Expect(4) = 9e-034
Identities = 19/31 (61%), Positives = 21/31 (67%)
Frame = -2 / -2
Query: 335 EGRGAQ*MPLYAHTLGPAQLEVKLDGSEKMA 243
EG GAQ +PL T P QL VKL GSEK+A
Sbjct: 407 EGEGAQKIPL*EQTSEPFQLAVKLKGSEKIA 315
Score = 35.9 bits (72), Expect(3) = 9e-082
Identities = 13/14 (92%), Positives = 13/14 (92%)
Frame = +3 / +1
Query: 423 DLALLHLNSNRFCG 464
DLAL HLNSNRFCG
Sbjct: 496 DLALFHLNSNRFCG 537
Score = 23.5 bits (45), Expect(4) = 9e-034
Identities = 10/15 (66%), Positives = 10/15 (66%)
Frame = -3 / -2
Query: 412 RGRSAGMWPAMSAWL 368
R S G PAMSAWL
Sbjct: 488 RPSSRGK*PAMSAWL 444
>emb|AX507698.1| Sequence 2393 from Patent WO0216655
Length = 2361
Score = 243 bits (526), Expect(3) = 9e-082
Identities = 100/157 (63%), Positives = 120/157 (76%)
Frame = +3 / +1
Query: 516 SNNRFVGAFPAVVLALPSLRYLDLRFNDFEGPIPPPLFDRPLDAILLNSNRLRGPIPANL 695
SNNRFVG FP VVL+LPSL++LDLR+N+FEG IP LFD+ LDAI LN NR IP N+
Sbjct: 469 SNNRFVGKFPNVVLSLPSLKFLDLRYNEFEGSIPSKLFDKELDAIFLNHNRFMFGIPENM 648
Query: 696 GNSPASVLVLAHNRLGGCIPPSIGRMAATLNEIVLIDDDLTGCVPPQVGLLTKLTVFDVS 875
GNSP S LVLA N LGGCIP SIG M TLNEI+L +D+LTGC+PPQ+G L +TVFD+S
Sbjct: 649 GNSPVSALVLADNDLGGCIPGSIGLMGKTLNEIILSNDNLTGCLPPQIGNLKNVTVFDIS 828
Query: 876 GNHLQGPLPPAVGGMAVLQQLNVAGNLLRGPVPSAVC 986
N L GPLP ++G M L+QLNVA N G +PS++C
Sbjct: 829 FNRLSGPLPSSIGNMKSLEQLNVANNRFTGVIPSSIC 939
Score = 99.1 bits (210), Expect(4) = 9e-034
Identities = 49/110 (44%), Positives = 63/110 (57%)
Frame = -3 / -2
Query: 973 GTGPLSRFPATLSCWRTAIPPTAGGSGP*RWLPLTSNTVSFVSRPTCGGTQPVRSSSMRT 794
G P++ ATLSC + + P G+GP + L L S TV+F+ P CGG QPV+ S R
Sbjct: 926 GITPVNLLLATLSCSKLFMFPMLDGNGPLKRLKLISKTVTFLRFPICGGKQPVKLSLERM 747
Query: 793 ISLSVAAILPIDGGMQPPRRLCASTSTEAGELPRLAGMGPRRRLELRRMA 644
ISL V I PI GMQPPR L A T + GE P +G+ RL + +A
Sbjct: 746 ISLRVFPIKPILPGMQPPRSLSARTRADTGEFPMFSGIPNINRLWFKNIA 597
Score = 66.6 bits (139), Expect(3) = 9e-082
Identities = 23/33 (69%), Positives = 28/33 (84%)
Frame = +1 / +1
Query: 238 RTAIFSDPSNFTSNWAGPNVCAYNGIYCAPRPS 336
+ AIFSDP NFT+NW G +VC+YNGI+CAP PS
Sbjct: 190 KQAIFSDPFNFTANWNGSDVCSYNGIFCAPSPS 288
Score = 40.0 bits (81), Expect(4) = 9e-034
Identities = 20/49 (40%), Positives = 23/49 (46%)
Frame = -3 / -2
Query: 568 EGSASTTAGKAPTKXXXXXXXXXXXXXXXSVSGSTPQKRLELRWSSARS 422
EG TT G PTK +V G++PQKR ELR ARS
Sbjct: 521 EGKDKTTLGNFPTKRLLLKSSSKRSFMCLNVRGTSPQKRFELR*KRARS 375
Score = 39.6 bits (80), Expect(4) = 9e-034
Identities = 19/31 (61%), Positives = 21/31 (67%)
Frame = -2 / -2
Query: 335 EGRGAQ*MPLYAHTLGPAQLEVKLDGSEKMA 243
EG GAQ +PL T P QL VKL GSEK+A
Sbjct: 287 EGEGAQKIPL*EQTSEPFQLAVKLKGSEKIA 195
Score = 35.9 bits (72), Expect(3) = 9e-082
Identities = 13/14 (92%), Positives = 13/14 (92%)
Frame = +3 / +1
Query: 423 DLALLHLNSNRFCG 464
DLAL HLNSNRFCG
Sbjct: 376 DLALFHLNSNRFCG 417
Score = 23.5 bits (45), Expect(4) = 9e-034
Identities = 10/15 (66%), Positives = 10/15 (66%)
Frame = -3 / -2
Query: 412 RGRSAGMWPAMSAWL 368
R S G PAMSAWL
Sbjct: 368 RPSSRGK*PAMSAWL 324
>emb|AL161572.2|ATCHRIV68 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 68
Length = 199749
Score = 247 bits (534), Expect(3) = 2e-077
Identities = 102/188 (54%), Positives = 130/188 (69%)
Frame = +3 / -1
Query: 423 DLALLHLNSNRFCGVXXXXXXXXXXXXXXXXSNNRFVGAFPAVVLALPSLRYLDLRFNDF 602
DLAL+HLNSNRFCG+ SNNRFVG FP VVLALPSL+YLDLR+N+F
Sbjct: 156072 DLALIHLNSNRFCGILPRSFANLSLLYELDLSNNRFVGPFPDVVLALPSLKYLDLRYNEF 155893
Query: 603 EGPIPPPLFDRPLDAILLNSNRLRGPIPANLGNSPASVLVLAHNRLGGCIPPSIGRMAAT 782
EGP+PP LF PLDAI +N+NRL IP + + ASV+V A+N GC+PP+I R A T
Sbjct: 155892 EGPLPPKLFSNPLDAIFVNNNRLTSLIPRDFTGTTASVVVFANNDFSGCLPPTIARFADT 155713
Query: 783 LNEIVLIDDDLTGCVPPQVGLLTKLTVFDVSGNHLQGPLPPAVGGMAVLQQLNVAGNLLR 962
L E++LI+ L+GC+PP+VG L KL V D+S N L GP+P ++ G+ L+QLN+ N+
Sbjct: 155712 LEELLLINSSLSGCLPPEVGYLYKLRVLDMSYNSLVGPVPYSLAGLGHLEQLNLEHNMFT 155533
Query: 963 GPVPSAVC 986
G VP VC
Sbjct: 155532 GTVPLGVC 155509
Score = 65.7 bits (137), Expect(4) = 2e-021
Identities = 41/113 (36%), Positives = 55/113 (48%)
Frame = -3 / +2
Query: 982 TADGTGPLSRFPATLSCWRTAIPPTAGGSGP*RWLPLTSNTVSFVSRPTCGGTQPVRSSS 803
T GT P++ + SC R P G+GP + L L S T+S PT GG P +
Sbjct: 155513 TPRGTVPVNMLCSRFSCSRWPSPARL*GTGPTKLL*LMSRTLSL*RYPTSGGRHPDKLEL 155692
Query: 802 MRTISLSVAAILPIDGGMQPPRRLCASTSTEAGELPRLAGMGPRRRLELRRMA 644
+R S V+A + GG QP + L A T+TEA + GM RL +MA
Sbjct: 155693 IRRSSSKVSAKRAMVGGRQPLKSLLAKTTTEAVVPVKSRGMRLVNRLLFTKMA 155851
Score = 61.6 bits (128), Expect(3) = 2e-077
Identities = 19/34 (55%), Positives = 27/34 (79%)
Frame = +1 / -1
Query: 238 RTAIFSDPSNFTSNWAGPNVCAYNGIYCAPRPSD 339
+ I+SDP N T++W GP+VC+Y GI+CAP PS+
Sbjct: 156258 KKVIYSDPKNLTADWVGPSVCSYTGIFCAPSPSN 156157
Score = 33.1 bits (66), Expect(4) = 2e-021
Identities = 16/28 (57%), Positives = 17/28 (60%)
Frame = -2 / +2
Query: 335 EGRGAQ*MPLYAHTLGPAQLEVKLDGSE 252
EG GAQ MP+ T GP Q VK GSE
Sbjct: 156161 EGDGAQKMPV*LQTEGPTQSAVKFFGSE 156244
Score = 31.8 bits (63), Expect(4) = 2e-021
Identities = 13/17 (76%), Positives = 13/17 (76%)
Frame = -3 / +2
Query: 472 GSTPQKRLELRWSSARS 422
GS PQKRL LRW ARS
Sbjct: 156023 GSMPQKRLLLRWMRARS 156073
Score = 29.0 bits (57), Expect(4) = 2e-021
Identities = 11/14 (78%), Positives = 12/14 (85%)
Frame = -3 / +2
Query: 568 EGSASTTAGKAPTK 527
EGSA TT+GK PTK
Sbjct: 155927 EGSARTTSGKGPTK 155968
Score = 22.6 bits (43), Expect(3) = 2e-077
Identities = 8/15 (53%), Positives = 10/15 (66%)
Frame = +3 / -1
Query: 369 NHADIAGHIPADLPL 413
NH DIAG +P + L
Sbjct: 156123 NHGDIAGFLPEAIGL 156079
>emb|AL021749.1|ATF20O9 Arabidopsis thaliana DNA chromosome 4, BAC clone F20O9 (ESSA project)
Length = 93695
Score = 247 bits (534), Expect(3) = 2e-077
Identities = 102/188 (54%), Positives = 130/188 (69%)
Frame = +3 / -1
Query: 423 DLALLHLNSNRFCGVXXXXXXXXXXXXXXXXSNNRFVGAFPAVVLALPSLRYLDLRFNDF 602
DLAL+HLNSNRFCG+ SNNRFVG FP VVLALPSL+YLDLR+N+F
Sbjct: 18155 DLALIHLNSNRFCGILPRSFANLSLLYELDLSNNRFVGPFPDVVLALPSLKYLDLRYNEF 17976
Query: 603 EGPIPPPLFDRPLDAILLNSNRLRGPIPANLGNSPASVLVLAHNRLGGCIPPSIGRMAAT 782
EGP+PP LF PLDAI +N+NRL IP + + ASV+V A+N GC+PP+I R A T
Sbjct: 17975 EGPLPPKLFSNPLDAIFVNNNRLTSLIPRDFTGTTASVVVFANNDFSGCLPPTIARFADT 17796
Query: 783 LNEIVLIDDDLTGCVPPQVGLLTKLTVFDVSGNHLQGPLPPAVGGMAVLQQLNVAGNLLR 962
L E++LI+ L+GC+PP+VG L KL V D+S N L GP+P ++ G+ L+QLN+ N+
Sbjct: 17795 LEELLLINSSLSGCLPPEVGYLYKLRVLDMSYNSLVGPVPYSLAGLGHLEQLNLEHNMFT 17616
Query: 963 GPVPSAVC 986
G VP VC
Sbjct: 17615 GTVPLGVC 17592
Score = 65.7 bits (137), Expect(4) = 2e-021
Identities = 41/113 (36%), Positives = 55/113 (48%)
Frame = -3 / +1
Query: 982 TADGTGPLSRFPATLSCWRTAIPPTAGGSGP*RWLPLTSNTVSFVSRPTCGGTQPVRSSS 803
T GT P++ + SC R P G+GP + L L S T+S PT GG P +
Sbjct: 17596 TPRGTVPVNMLCSRFSCSRWPSPARL*GTGPTKLL*LMSRTLSL*RYPTSGGRHPDKLEL 17775
Query: 802 MRTISLSVAAILPIDGGMQPPRRLCASTSTEAGELPRLAGMGPRRRLELRRMA 644
+R S V+A + GG QP + L A T+TEA + GM RL +MA
Sbjct: 17776 IRRSSSKVSAKRAMVGGRQPLKSLLAKTTTEAVVPVKSRGMRLVNRLLFTKMA 17934
Score = 61.6 bits (128), Expect(3) = 2e-077
Identities = 19/34 (55%), Positives = 27/34 (79%)
Frame = +1 / -1
Query: 238 RTAIFSDPSNFTSNWAGPNVCAYNGIYCAPRPSD 339
+ I+SDP N T++W GP+VC+Y GI+CAP PS+
Sbjct: 18341 KKVIYSDPKNLTADWVGPSVCSYTGIFCAPSPSN 18240
Score = 33.1 bits (66), Expect(4) = 2e-021
Identities = 16/28 (57%), Positives = 17/28 (60%)
Frame = -2 / +1
Query: 335 EGRGAQ*MPLYAHTLGPAQLEVKLDGSE 252
EG GAQ MP+ T GP Q VK GSE
Sbjct: 18244 EGDGAQKMPV*LQTEGPTQSAVKFFGSE 18327
Score = 31.8 bits (63), Expect(4) = 2e-021
Identities = 13/17 (76%), Positives = 13/17 (76%)
Frame = -3 / +1
Query: 472 GSTPQKRLELRWSSARS 422
GS PQKRL LRW ARS
Sbjct: 18106 GSMPQKRLLLRWMRARS 18156
Score = 29.0 bits (57), Expect(4) = 2e-021
Identities = 11/14 (78%), Positives = 12/14 (85%)
Frame = -3 / +1
Query: 568 EGSASTTAGKAPTK 527
EGSA TT+GK PTK
Sbjct: 18010 EGSARTTSGKGPTK 18051
Score = 22.6 bits (43), Expect(3) = 2e-077
Identities = 8/15 (53%), Positives = 10/15 (66%)
Frame = +3 / -1
Query: 369 NHADIAGHIPADLPL 413
NH DIAG +P + L
Sbjct: 18206 NHGDIAGFLPEAIGL 18162
>ref|NM_118978.2| Arabidopsis thaliana ubiquitin-protein ligase/ zinc ion binding
AT4G28370 mRNA, complete cds
Length = 3613
Score = 247 bits (534), Expect(3) = 2e-077
Identities = 102/188 (54%), Positives = 130/188 (69%)
Frame = +3 / -1
Query: 423 DLALLHLNSNRFCGVXXXXXXXXXXXXXXXXSNNRFVGAFPAVVLALPSLRYLDLRFNDF 602
DLAL+HLNSNRFCG+ SNNRFVG FP VVLALPSL+YLDLR+N+F
Sbjct: 2536 DLALIHLNSNRFCGILPRSFANLSLLYELDLSNNRFVGPFPDVVLALPSLKYLDLRYNEF 2357
Query: 603 EGPIPPPLFDRPLDAILLNSNRLRGPIPANLGNSPASVLVLAHNRLGGCIPPSIGRMAAT 782
EGP+PP LF PLDAI +N+NRL IP + + ASV+V A+N GC+PP+I R A T
Sbjct: 2356 EGPLPPKLFSNPLDAIFVNNNRLTSLIPRDFTGTTASVVVFANNDFSGCLPPTIARFADT 2177
Query: 783 LNEIVLIDDDLTGCVPPQVGLLTKLTVFDVSGNHLQGPLPPAVGGMAVLQQLNVAGNLLR 962
L E++LI+ L+GC+PP+VG L KL V D+S N L GP+P ++ G+ L+QLN+ N+
Sbjct: 2176 LEELLLINSSLSGCLPPEVGYLYKLRVLDMSYNSLVGPVPYSLAGLGHLEQLNLEHNMFT 1997
Query: 963 GPVPSAVC 986
G VP VC
Sbjct: 1996 GTVPLGVC 1973
Score = 65.7 bits (137), Expect(4) = 2e-021
Identities = 41/113 (36%), Positives = 55/113 (48%)
Frame = -3 / +3
Query: 982 TADGTGPLSRFPATLSCWRTAIPPTAGGSGP*RWLPLTSNTVSFVSRPTCGGTQPVRSSS 803
T GT P++ + SC R P G+GP + L L S T+S PT GG P +
Sbjct: 1977 TPRGTVPVNMLCSRFSCSRWPSPARL*GTGPTKLL*LMSRTLSL*RYPTSGGRHPDKLEL 2156
Query: 802 MRTISLSVAAILPIDGGMQPPRRLCASTSTEAGELPRLAGMGPRRRLELRRMA 644
+R S V+A + GG QP + L A T+TEA + GM RL +MA
Sbjct: 2157 IRRSSSKVSAKRAMVGGRQPLKSLLAKTTTEAVVPVKSRGMRLVNRLLFTKMA 2315
Score = 61.6 bits (128), Expect(3) = 2e-077
Identities = 19/34 (55%), Positives = 27/34 (79%)
Frame = +1 / -1
Query: 238 RTAIFSDPSNFTSNWAGPNVCAYNGIYCAPRPSD 339
+ I+SDP N T++W GP+VC+Y GI+CAP PS+
Sbjct: 2722 KKVIYSDPKNLTADWVGPSVCSYTGIFCAPSPSN 2621
Score = 33.1 bits (66), Expect(4) = 2e-021
Identities = 16/28 (57%), Positives = 17/28 (60%)
Frame = -2 / +3
Query: 335 EGRGAQ*MPLYAHTLGPAQLEVKLDGSE 252
EG GAQ MP+ T GP Q VK GSE
Sbjct: 2625 EGDGAQKMPV*LQTEGPTQSAVKFFGSE 2708
Score = 31.8 bits (63), Expect(4) = 2e-021
Identities = 13/17 (76%), Positives = 13/17 (76%)
Frame = -3 / +3
Query: 472 GSTPQKRLELRWSSARS 422
GS PQKRL LRW ARS
Sbjct: 2487 GSMPQKRLLLRWMRARS 2537
Score = 29.0 bits (57), Expect(4) = 2e-021
Identities = 11/14 (78%), Positives = 12/14 (85%)
Frame = -3 / +3
Query: 568 EGSASTTAGKAPTK 527
EGSA TT+GK PTK
Sbjct: 2391 EGSARTTSGKGPTK 2432
Score = 22.6 bits (43), Expect(3) = 2e-077
Identities = 8/15 (53%), Positives = 10/15 (66%)
Frame = +3 / -1
Query: 369 NHADIAGHIPADLPL 413
NH DIAG +P + L
Sbjct: 2587 NHGDIAGFLPEAIGL 2543
>gb|AY096640.1| Arabidopsis thaliana At4g28370 mRNA sequence
Length = 2333
Score = 247 bits (534), Expect(3) = 2e-077
Identities = 102/188 (54%), Positives = 130/188 (69%)
Frame = +3 / -1
Query: 423 DLALLHLNSNRFCGVXXXXXXXXXXXXXXXXSNNRFVGAFPAVVLALPSLRYLDLRFNDF 602
DLAL+HLNSNRFCG+ SNNRFVG FP VVLALPSL+YLDLR+N+F
Sbjct: 1580 DLALIHLNSNRFCGILPRSFANLSLLYELDLSNNRFVGPFPDVVLALPSLKYLDLRYNEF 1401
Query: 603 EGPIPPPLFDRPLDAILLNSNRLRGPIPANLGNSPASVLVLAHNRLGGCIPPSIGRMAAT 782
EGP+PP LF PLDAI +N+NRL IP + + ASV+V A+N GC+PP+I R A T
Sbjct: 1400 EGPLPPKLFSNPLDAIFVNNNRLTSLIPRDFTGTTASVVVFANNDFSGCLPPTIARFADT 1221
Query: 783 LNEIVLIDDDLTGCVPPQVGLLTKLTVFDVSGNHLQGPLPPAVGGMAVLQQLNVAGNLLR 962
L E++LI+ L+GC+PP+VG L KL V D+S N L GP+P ++ G+ L+QLN+ N+
Sbjct: 1220 LEELLLINSSLSGCLPPEVGYLYKLRVLDMSYNSLVGPVPYSLAGLGHLEQLNLEHNMFT 1041
Query: 963 GPVPSAVC 986
G VP VC
Sbjct: 1040 GTVPLGVC 1017
Score = 65.7 bits (137), Expect(4) = 2e-021
Identities = 41/113 (36%), Positives = 55/113 (48%)
Frame = -3 / +1
Query: 982 TADGTGPLSRFPATLSCWRTAIPPTAGGSGP*RWLPLTSNTVSFVSRPTCGGTQPVRSSS 803
T GT P++ + SC R P G+GP + L L S T+S PT GG P +
Sbjct: 1021 TPRGTVPVNMLCSRFSCSRWPSPARL*GTGPTKLL*LMSRTLSL*RYPTSGGRHPDKLEL 1200
Query: 802 MRTISLSVAAILPIDGGMQPPRRLCASTSTEAGELPRLAGMGPRRRLELRRMA 644
+R S V+A + GG QP + L A T+TEA + GM RL +MA
Sbjct: 1201 IRRSSSKVSAKRAMVGGRQPLKSLLAKTTTEAVVPVKSRGMRLVNRLLFTKMA 1359
Score = 61.6 bits (128), Expect(3) = 2e-077
Identities = 19/34 (55%), Positives = 27/34 (79%)
Frame = +1 / -1
Query: 238 RTAIFSDPSNFTSNWAGPNVCAYNGIYCAPRPSD 339
+ I+SDP N T++W GP+VC+Y GI+CAP PS+
Sbjct: 1766 KKVIYSDPKNLTADWVGPSVCSYTGIFCAPSPSN 1665
Score = 33.1 bits (66), Expect(4) = 2e-021
Identities = 16/28 (57%), Positives = 17/28 (60%)
Frame = -2 / +1
Query: 335 EGRGAQ*MPLYAHTLGPAQLEVKLDGSE 252
EG GAQ MP+ T GP Q VK GSE
Sbjct: 1669 EGDGAQKMPV*LQTEGPTQSAVKFFGSE 1752
Score = 31.8 bits (63), Expect(4) = 2e-021
Identities = 13/17 (76%), Positives = 13/17 (76%)
Frame = -3 / +1
Query: 472 GSTPQKRLELRWSSARS 422
GS PQKRL LRW ARS
Sbjct: 1531 GSMPQKRLLLRWMRARS 1581
Score = 29.0 bits (57), Expect(4) = 2e-021
Identities = 11/14 (78%), Positives = 12/14 (85%)
Frame = -3 / +1
Query: 568 EGSASTTAGKAPTK 527
EGSA TT+GK PTK
Sbjct: 1435 EGSARTTSGKGPTK 1476
Score = 22.6 bits (43), Expect(3) = 2e-077
Identities = 8/15 (53%), Positives = 10/15 (66%)
Frame = +3 / -1
Query: 369 NHADIAGHIPADLPL 413
NH DIAG +P + L
Sbjct: 1631 NHGDIAGFLPEAIGL 1587
>ref|NM_118979.1| Arabidopsis thaliana protein binding AT4G28380 mRNA, complete cds
Length = 1176
Score = 247 bits (534), Expect(3) = 2e-077
Identities = 102/188 (54%), Positives = 130/188 (69%)
Frame = +3 / +1
Query: 423 DLALLHLNSNRFCGVXXXXXXXXXXXXXXXXSNNRFVGAFPAVVLALPSLRYLDLRFNDF 602
DLAL+HLNSNRFCG+ SNNRFVG FP VVLALPSL+YLDLR+N+F
Sbjct: 343 DLALIHLNSNRFCGILPRSFANLSLLYELDLSNNRFVGPFPDVVLALPSLKYLDLRYNEF 522
Query: 603 EGPIPPPLFDRPLDAILLNSNRLRGPIPANLGNSPASVLVLAHNRLGGCIPPSIGRMAAT 782
EGP+PP LF PLDAI +N+NRL IP + + ASV+V A+N GC+PP+I R A T
Sbjct: 523 EGPLPPKLFSNPLDAIFVNNNRLTSLIPRDFTGTTASVVVFANNDFSGCLPPTIARFADT 702
Query: 783 LNEIVLIDDDLTGCVPPQVGLLTKLTVFDVSGNHLQGPLPPAVGGMAVLQQLNVAGNLLR 962
L E++LI+ L+GC+PP+VG L KL V D+S N L GP+P ++ G+ L+QLN+ N+
Sbjct: 703 LEELLLINSSLSGCLPPEVGYLYKLRVLDMSYNSLVGPVPYSLAGLGHLEQLNLEHNMFT 882
Query: 963 GPVPSAVC 986
G VP VC
Sbjct: 883 GTVPLGVC 906
Score = 65.7 bits (137), Expect(4) = 2e-021
Identities = 41/113 (36%), Positives = 55/113 (48%)
Frame = -3 / -2
Query: 982 TADGTGPLSRFPATLSCWRTAIPPTAGGSGP*RWLPLTSNTVSFVSRPTCGGTQPVRSSS 803
T GT P++ + SC R P G+GP + L L S T+S PT GG P +
Sbjct: 902 TPRGTVPVNMLCSRFSCSRWPSPARL*GTGPTKLL*LMSRTLSL*RYPTSGGRHPDKLEL 723
Query: 802 MRTISLSVAAILPIDGGMQPPRRLCASTSTEAGELPRLAGMGPRRRLELRRMA 644
+R S V+A + GG QP + L A T+TEA + GM RL +MA
Sbjct: 722 IRRSSSKVSAKRAMVGGRQPLKSLLAKTTTEAVVPVKSRGMRLVNRLLFTKMA 564
Score = 61.6 bits (128), Expect(3) = 2e-077
Identities = 19/34 (55%), Positives = 27/34 (79%)
Frame = +1 / +1
Query: 238 RTAIFSDPSNFTSNWAGPNVCAYNGIYCAPRPSD 339
+ I+SDP N T++W GP+VC+Y GI+CAP PS+
Sbjct: 157 KKVIYSDPKNLTADWVGPSVCSYTGIFCAPSPSN 258
Score = 33.1 bits (66), Expect(4) = 2e-021
Identities = 16/28 (57%), Positives = 17/28 (60%)
Frame = -2 / -2
Query: 335 EGRGAQ*MPLYAHTLGPAQLEVKLDGSE 252
EG GAQ MP+ T GP Q VK GSE
Sbjct: 254 EGDGAQKMPV*LQTEGPTQSAVKFFGSE 171
Score = 31.8 bits (63), Expect(4) = 2e-021
Identities = 13/17 (76%), Positives = 13/17 (76%)
Frame = -3 / -2
Query: 472 GSTPQKRLELRWSSARS 422
GS PQKRL LRW ARS
Sbjct: 392 GSMPQKRLLLRWMRARS 342
Score = 29.0 bits (57), Expect(4) = 2e-021
Identities = 11/14 (78%), Positives = 12/14 (85%)
Frame = -3 / -2
Query: 568 EGSASTTAGKAPTK 527
EGSA TT+GK PTK
Sbjct: 488 EGSARTTSGKGPTK 447
Score = 22.6 bits (43), Expect(3) = 2e-077
Identities = 8/15 (53%), Positives = 10/15 (66%)
Frame = +3 / +1
Query: 369 NHADIAGHIPADLPL 413
NH DIAG +P + L
Sbjct: 292 NHGDIAGFLPEAIGL 336
>emb|AJ270060.1| Arabidopsis thaliana DNA chromosome 4, long arm
Length = 14497843
Score = 247 bits (534), Expect(2) = 2e-076
Identities = 102/188 (54%), Positives = 130/188 (69%)
Frame = +3 / -2
Query: 423 DLALLHLNSNRFCGVXXXXXXXXXXXXXXXXSNNRFVGAFPAVVLALPSLRYLDLRFNDF 602
DLAL+HLNSNRFCG+ SNNRFVG FP VVLALPSL+YLDLR+N+F
Sbjct: 9953364 DLALIHLNSNRFCGILPRSFANLSLLYELDLSNNRFVGPFPDVVLALPSLKYLDLRYNEF 9953185
Query: 603 EGPIPPPLFDRPLDAILLNSNRLRGPIPANLGNSPASVLVLAHNRLGGCIPPSIGRMAAT 782
EGP+PP LF PLDAI +N+NRL IP + + ASV+V A+N GC+PP+I R A T
Sbjct: 9953184 EGPLPPKLFSNPLDAIFVNNNRLTSLIPRDFTGTTASVVVFANNDFSGCLPPTIARFADT 9953005
Query: 783 LNEIVLIDDDLTGCVPPQVGLLTKLTVFDVSGNHLQGPLPPAVGGMAVLQQLNVAGNLLR 962
L E++LI+ L+GC+PP+VG L KL V D+S N L GP+P ++ G+ L+QLN+ N+
Sbjct: 9953004 LEELLLINSSLSGCLPPEVGYLYKLRVLDMSYNSLVGPVPYSLAGLGHLEQLNLEHNMFT 9952825
Query: 963 GPVPSAVC 986
G VP VC
Sbjct: 9952824 GTVPLGVC 9952801
Score = 204 bits (441), Expect(2) = 8e-058
Identities = 89/188 (47%), Positives = 118/188 (62%)
Frame = +3 / +1
Query: 423 DLALLHLNSNRFCGVXXXXXXXXXXXXXXXXSNNRFVGAFPAVVLALPSLRYLDLRFNDF 602
DL +LHLNSNRF G SNN+ G FP V L +P+L YLDLRFN
Sbjct: 10332016 DLNILHLNSNRFSGQIPDSFKSLASLQELDLSNNKLSGPFPLVTLYIPNLVYLDLRFNSL 10332195
Query: 603 EGPIPPPLFDRPLDAILLNSNRLRGPIPANLGNSPASVLVLAHNRLGGCIPPSIGRMAAT 782
G IP LF++ LDAILLN+N+ G IP NLGNSPASV+ LA+NR G IP S G +
Sbjct: 10332196 TGFIPEELFNKRLDAILLNNNQFVGEIPRNLGNSPASVINLANNRFSGEIPTSFGLTGSR 10332375
Query: 783 LNEIVLIDDDLTGCVPPQVGLLTKLTVFDVSGNHLQGPLPPAVGGMAVLQQLNVAGNLLR 962
+ E++L+++ LTGC+P VG+ +++ VFDVS N L G +P + ++ ++ LN+A N
Sbjct: 10332376 VKEVLLLNNQLTGCIPESVGMFSEIEVFDVSYNALMGHVPDTISCLSAIEILNLAHNKFS 10332555
Query: 963 GPVPSAVC 986
G VP VC
Sbjct: 10332556 GEVPDLVC 10332579
Score = 136 bits (291), Expect(3) = 3e-051
Identities = 54/86 (62%), Positives = 66/86 (76%)
Frame = +3 / -2
Query: 516 SNNRFVGAFPAVVLALPSLRYLDLRFNDFEGPIPPPLFDRPLDAILLNSNRLRGPIPANL 695
SNNRF G FP VVL LPSL++LDLRFN+FEGP+P LF + LDAI +N NR R +P NL
Sbjct: 6190704 SNNRFAGIFPTVVLQLPSLKFLDLRFNEFEGPVPRELFSKDLDAIFINHNRFRFELPDNL 6190525
Query: 696 GNSPASVLVLAHNRLGGCIPPSIGRM 773
G+SP SV+V+A+N GCIP S+G M
Sbjct: 6190524 GDSPVSVIVVANNHFHGCIPTSLGDM 6190447
Score = 133 bits (286), Expect(3) = 2e-049
Identities = 54/86 (62%), Positives = 63/86 (73%)
Frame = +3 / -1
Query: 516 SNNRFVGAFPAVVLALPSLRYLDLRFNDFEGPIPPPLFDRPLDAILLNSNRLRGPIPANL 695
SNNRFVG FP VVL+ P ++Y DLRFNDFEG +PP LF + LDAI LN NR IP +L
Sbjct: 12194113 SNNRFVGPFPNVVLSWPDVKYFDLRFNDFEGQVPPELFKKELDAIFLNDNRFTSVIPESL 12193934
Query: 696 GNSPASVLVLAHNRLGGCIPPSIGRM 773
G SPASV+ A+N+ GCIP SIG M
Sbjct: 12193933 GESPASVVTFANNKFTGCIPKSIGNM 12193856
Score = 131 bits (281), Expect(3) = 5e-052
Identities = 52/86 (60%), Positives = 64/86 (74%)
Frame = +3 / +2
Query: 516 SNNRFVGAFPAVVLALPSLRYLDLRFNDFEGPIPPPLFDRPLDAILLNSNRLRGPIPANL 695
SNNRF G FP VVL LPSL++LDLRFN+FEG +P LF + LDAI +N NR R +P N
Sbjct: 3671855 SNNRFAGKFPTVVLQLPSLKFLDLRFNEFEGTVPKELFSKDLDAIFINHNRFRFELPENF 3672034
Query: 696 GNSPASVLVLAHNRLGGCIPPSIGRM 773
G+SP SV+VLA+NR GC+P S+ M
Sbjct: 3672035 GDSPVSVIVLANNRFHGCVPSSLVEM 3672112
Score = 89.0 bits (188), Expect(3) = 5e-052
Identities = 34/68 (50%), Positives = 49/68 (72%)
Frame = +3 / +2
Query: 783 LNEIVLIDDDLTGCVPPQVGLLTKLTVFDVSGNHLQGPLPPAVGGMAVLQQLNVAGNLLR 962
LNEI+ +++ L C+P +G L +TVFDVS N L GPLP +VG M ++QLNVA N+L
Sbjct: 3672119 LNEIIFMNNGLNSCLPSDIGRLKNVTVFDVSFNELVGPLPESVGEMVSVEQLNVAHNMLS 3672298
Query: 963 GPVPSAVC 986
G +P+++C
Sbjct: 3672299 GKIPASIC 3672322
Score = 80.8 bits (170), Expect(3) = 3e-051
Identities = 30/68 (44%), Positives = 44/68 (64%)
Frame = +3 / -2
Query: 783 LNEIVLIDDDLTGCVPPQVGLLTKLTVFDVSGNHLQGPLPPAVGGMAVLQQLNVAGNLLR 962
L EI+ +++ C+P Q+G L +TVFD S N L G LP ++GGM ++QLNVA N
Sbjct: 6190440 LEEIIFMENGFNSCLPSQIGRLKNVTVFDFSFNELVGSLPASIGGMVSMEQLNVAHNRFS 6190261
Query: 963 GPVPSAVC 986
G +P+ +C
Sbjct: 6190260 GKIPATIC 6190237
Score = 78.0 bits (164), Expect(3) = 2e-049
Identities = 30/68 (44%), Positives = 46/68 (67%)
Frame = +3 / -1
Query: 783 LNEIVLIDDDLTGCVPPQVGLLTKLTVFDVSGNHLQGPLPPAVGGMAVLQQLNVAGNLLR 962
LNEIV +D+DL GC P ++G L+ +TVFD S N G LP + G+ +++++++GN L
Sbjct: 12193849 LNEIVFMDNDLGGCFPSEIGKLSNVTVFDASKNSFIGRLPTSFVGLTSVEEIDISGNKLT 12193670
Query: 963 GPVPSAVC 986
G VP +C
Sbjct: 12193669 GLVPHNIC 12193646
Score = 61.6 bits (128), Expect(2) = 2e-076
Identities = 19/34 (55%), Positives = 27/34 (79%)
Frame = +1 / -2
Query: 238 RTAIFSDPSNFTSNWAGPNVCAYNGIYCAPRPSD 339
+ I+SDP N T++W GP+VC+Y GI+CAP PS+
Sbjct: 9953550 KKVIYSDPKNLTADWVGPSVCSYTGIFCAPSPSN 9953449
Score = 59.7 bits (124), Expect(3) = 3e-051
Identities = 19/30 (63%), Positives = 25/30 (83%)
Frame = +1 / -2
Query: 238 RTAIFSDPSNFTSNWAGPNVCAYNGIYCAP 327
+ AI SDP+NFT+NW G +VC+Y G+YCAP
Sbjct: 6190983 KQAILSDPNNFTTNWIGSDVCSYTGVYCAP 6190894
Score = 58.8 bits (122), Expect(3) = 5e-052
Identities = 19/30 (63%), Positives = 24/30 (80%)
Frame = +1 / +2
Query: 238 RTAIFSDPSNFTSNWAGPNVCAYNGIYCAP 327
+ AI SDP+NFTSNW G NVC Y G++C+P
Sbjct: 3671576 KQAILSDPNNFTSNWIGSNVCNYTGVFCSP 3671665
Score = 58.3 bits (121), Expect(3) = 2e-049
Identities = 21/39 (53%), Positives = 25/39 (64%)
Frame = +1 / -1
Query: 238 RTAIFSDPSNFTSNWAGPNVCAYNGIYCAPRPSDGALAV 354
+ AIFSDP N T NW GP+VC Y G+ CAP D + V
Sbjct: 12194392 KKAIFSDPFNTTGNWHGPHVCGYTGVVCAPALDDSDVTV 12194276
Score = 42.3 bits (86), Expect(2) = 8e-058
Identities = 12/29 (41%), Positives = 20/29 (68%)
Frame = +1 / +1
Query: 238 RTAIFSDPSNFTSNWAGPNVCAYNGIYCA 324
++A+ DPSN W G +VC+Y G++C+
Sbjct: 10331851 KSAMREDPSNVLKTWVGSDVCSYKGVFCS 10331937
>gb|AC006601.1|AC006601 Arabidopsis thaliana chromosome V map near 60.5 cM, complete sequence
Length = 110684
Score = 248 bits (536), Expect(3) = 4e-074
Identities = 102/188 (54%), Positives = 126/188 (67%)
Frame = +3 / +3
Query: 423 DLALLHLNSNRFCGVXXXXXXXXXXXXXXXXSNNRFVGAFPAVVLALPSLRYLDLRFNDF 602
D+AL H+NSNRFCG SNNRF G FP VV+ LP L+YLDLR+N+F
Sbjct: 52338 DIALFHVNSNRFCGTLPVGFSQLSLLFELDLSNNRFAGKFPEVVIGLPKLKYLDLRYNEF 52517
Query: 603 EGPIPPPLFDRPLDAILLNSNRLRGPIPANLGNSPASVLVLAHNRLGGCIPPSIGRMAAT 782
EG +P LFD+ LDA+ LNSNR R IP N+GNSP SVLVLA NR GCIPPS G+M T
Sbjct: 52518 EGELPESLFDKDLDALFLNSNRFRSKIPVNMGNSPVSVLVLASNRFEGCIPPSFGKMGKT 52697
Query: 783 LNEIVLIDDDLTGCVPPQVGLLTKLTVFDVSGNHLQGPLPPAVGGMAVLQQLNVAGNLLR 962
LNEI+L+D+ L C+P +GLL +TV D+S N L G LP ++G M L+ LNV N+L
Sbjct: 52698 LNEIILMDNGLQSCIPNDMGLLQNVTVLDISYNWLVGELPKSMGQMENLEVLNVERNMLS 52877
Query: 963 GPVPSAVC 986
G +P +C
Sbjct: 52878 GLIPDELC 52901
Score = 46.4 bits (95), Expect(3) = 4e-074
Identities = 16/34 (47%), Positives = 21/34 (61%)
Frame = +1 / +3
Query: 238 RTAIFSDPSNFTSNWAGPNVCAYNGIYCAPRPSD 339
+ A+ SDP N T+NW G VC YNG+ C+ D
Sbjct: 52152 KRAMISDPWNLTTNWFGSRVCDYNGVVCSESLDD 52253
Score = 25.8 bits (50), Expect(3) = 4e-074
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = +3 / +3
Query: 369 NHADIAGHIPADLPL 413
N DIAGH+P +L L
Sbjct: 52287 NQGDIAGHLPEELGL 52331
>gb|DQ056690.1| Arabidopsis thaliana leucine-rich repeat family protein (At5g25550)
mRNA, complete cds
Length = 1302
Score = 248 bits (536), Expect(3) = 4e-074
Identities = 102/188 (54%), Positives = 126/188 (67%)
Frame = +3 / +1
Query: 423 DLALLHLNSNRFCGVXXXXXXXXXXXXXXXXSNNRFVGAFPAVVLALPSLRYLDLRFNDF 602
D+AL H+NSNRFCG SNNRF G FP VV+ LP L+YLDLR+N+F
Sbjct: 370 DIALFHVNSNRFCGTLPVGFSQLSLLFELDLSNNRFAGKFPEVVIGLPKLKYLDLRYNEF 549
Query: 603 EGPIPPPLFDRPLDAILLNSNRLRGPIPANLGNSPASVLVLAHNRLGGCIPPSIGRMAAT 782
EG +P LFD+ LDA+ LNSNR R IP N+GNSP SVLVLA NR GCIPPS G+M T
Sbjct: 550 EGELPESLFDKDLDALFLNSNRFRSKIPVNMGNSPVSVLVLASNRFEGCIPPSFGKMGKT 729
Query: 783 LNEIVLIDDDLTGCVPPQVGLLTKLTVFDVSGNHLQGPLPPAVGGMAVLQQLNVAGNLLR 962
LNEI+L+D+ L C+P +GLL +TV D+S N L G LP ++G M L+ LNV N+L
Sbjct: 730 LNEIILMDNGLQSCIPNDMGLLQNVTVLDISYNWLVGELPKSMGQMENLEVLNVERNMLS 909
Query: 963 GPVPSAVC 986
G +P +C
Sbjct: 910 GLIPDELC 933
Score = 46.4 bits (95), Expect(3) = 4e-074
Identities = 16/34 (47%), Positives = 21/34 (61%)
Frame = +1 / +1
Query: 238 RTAIFSDPSNFTSNWAGPNVCAYNGIYCAPRPSD 339
+ A+ SDP N T+NW G VC YNG+ C+ D
Sbjct: 184 KRAMISDPWNLTTNWFGSRVCDYNGVVCSESLDD 285
Score = 25.8 bits (50), Expect(3) = 4e-074
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = +3 / +1
Query: 369 NHADIAGHIPADLPL 413
N DIAGH+P +L L
Sbjct: 319 NQGDIAGHLPEELGL 363
>ref|NM_122466.1| Arabidopsis thaliana protein binding AT5G25550 mRNA, complete cds
Length = 1302
Score = 248 bits (536), Expect(3) = 4e-074
Identities = 102/188 (54%), Positives = 126/188 (67%)
Frame = +3 / +1
Query: 423 DLALLHLNSNRFCGVXXXXXXXXXXXXXXXXSNNRFVGAFPAVVLALPSLRYLDLRFNDF 602
D+AL H+NSNRFCG SNNRF G FP VV+ LP L+YLDLR+N+F
Sbjct: 370 DIALFHVNSNRFCGTLPVGFSQLSLLFELDLSNNRFAGKFPEVVIGLPKLKYLDLRYNEF 549
Query: 603 EGPIPPPLFDRPLDAILLNSNRLRGPIPANLGNSPASVLVLAHNRLGGCIPPSIGRMAAT 782
EG +P LFD+ LDA+ LNSNR R IP N+GNSP SVLVLA NR GCIPPS G+M T
Sbjct: 550 EGELPESLFDKDLDALFLNSNRFRSKIPVNMGNSPVSVLVLASNRFEGCIPPSFGKMGKT 729
Query: 783 LNEIVLIDDDLTGCVPPQVGLLTKLTVFDVSGNHLQGPLPPAVGGMAVLQQLNVAGNLLR 962
LNEI+L+D+ L C+P +GLL +TV D+S N L G LP ++G M L+ LNV N+L
Sbjct: 730 LNEIILMDNGLQSCIPNDMGLLQNVTVLDISYNWLVGELPKSMGQMENLEVLNVERNMLS 909
Query: 963 GPVPSAVC 986
G +P +C
Sbjct: 910 GLIPDELC 933
Score = 46.4 bits (95), Expect(3) = 4e-074
Identities = 16/34 (47%), Positives = 21/34 (61%)
Frame = +1 / +1
Query: 238 RTAIFSDPSNFTSNWAGPNVCAYNGIYCAPRPSD 339
+ A+ SDP N T+NW G VC YNG+ C+ D
Sbjct: 184 KRAMISDPWNLTTNWFGSRVCDYNGVVCSESLDD 285
Score = 25.8 bits (50), Expect(3) = 4e-074
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = +3 / +1
Query: 369 NHADIAGHIPADLPL 413
N DIAGH+P +L L
Sbjct: 319 NQGDIAGHLPEELGL 363
>gb|AE005172.1| Arabidopsis thaliana chromosome 1, top arm complete sequence
Length = 14221815
Score = 249 bits (538), Expect(2) = 8e-074
Identities = 100/157 (63%), Positives = 123/157 (78%)
Frame = +3 / +2
Query: 516 SNNRFVGAFPAVVLALPSLRYLDLRFNDFEGPIPPPLFDRPLDAILLNSNRLRGPIPANL 695
SNNRFVG FP VVL+LPSL++LDLR+N+FEG IP LFDR LDAI LN NR R IP N+
Sbjct: 4070441 SNNRFVGKFPKVVLSLPSLKFLDLRYNEFEGKIPSKLFDRELDAIFLNHNRFRFGIPKNM 4070620
Query: 696 GNSPASVLVLAHNRLGGCIPPSIGRMAATLNEIVLIDDDLTGCVPPQVGLLTKLTVFDVS 875
GNSP S LVLA N LGGCIP SIG+M TLNE++L +D+LTGC+PPQ+G L K+TVFD++
Sbjct: 4070621 GNSPVSALVLADNNLGGCIPGSIGQMGKTLNELILSNDNLTGCLPPQIGNLKKVTVFDIT 4070800
Query: 876 GNHLQGPLPPAVGGMAVLQQLNVAGNLLRGPVPSAVC 986
N LQGPLP +VG M L++L+VA N G +P ++C
Sbjct: 4070801 SNRLQGPLPSSVGNMKSLEELHVANNAFTGVIPPSIC 4070911
Score = 87.7 bits (185), Expect(3) = 6e-030
Identities = 48/110 (43%), Positives = 58/110 (52%)
Frame = -3 / -1
Query: 973 GTGPLSRFPATLSCWRTAIPPTAGGSGP*RWLPLTSNTVSFVSRPTCGGTQPVRSSSMRT 794
G P+ AT S R + PT G+GP R + S TV+F+ P GG QPV+ S R
Sbjct: 4070898 GITPVKALLAT*SSSRLFMLPTLDGNGPCRRFEVMSKTVTFLRFPI*GGKQPVKLSLERI 4070719
Query: 793 ISLSVAAILPIDGGMQPPRRLCASTSTEAGELPRLAGMGPRRRLELRRMA 644
SLSV I PI GM PPR L A T E GE P G+ R RL + +A
Sbjct: 4070718 SSLSVFPI*PILPGMHPPRLLSARTRAETGEFPMFLGIPNRNRLWFKNIA 4070569
Score = 68.4 bits (143), Expect(2) = 8e-074
Identities = 24/33 (72%), Positives = 28/33 (84%)
Frame = +1 / +2
Query: 238 RTAIFSDPSNFTSNWAGPNVCAYNGIYCAPRPS 336
+ AIFSDP NFT+NW G +VC+YNGIYCAP PS
Sbjct: 4070162 KKAIFSDPFNFTANWNGSDVCSYNGIYCAPSPS 4070260
Score = 41.8 bits (85), Expect(3) = 6e-030
Identities = 20/31 (64%), Positives = 22/31 (70%)
Frame = -2 / -1
Query: 335 EGRGAQ*MPLYAHTLGPAQLEVKLDGSEKMA 243
EG GAQ*+PL T P QL VKL GSEK+A
Sbjct: 4070259 EGEGAQ*IPL*EQTSEPFQLAVKLKGSEKIA 4070167
Score = 41.8 bits (85), Expect(3) = 6e-030
Identities = 19/49 (38%), Positives = 23/49 (46%)
Frame = -3 / -1
Query: 568 EGSASTTAGKAPTKXXXXXXXXXXXXXXXSVSGSTPQKRLELRWSSARS 422
EG TT G PT +V G++PQKR EL W+ ARS
Sbjct: 4070493 EGKERTTLGNLPTNRLLLRSSS*RSFMRLNVRGTSPQKRFELMWNRARS 4070347
>gb|AE005173.1| Arabidopsis thaliana chromosome 1, bottom arm complete sequence
Length = 14668883
Score = 243 bits (526), Expect(2) = 1e-071
Identities = 100/157 (63%), Positives = 120/157 (76%)
Frame = +3 / +1
Query: 516 SNNRFVGAFPAVVLALPSLRYLDLRFNDFEGPIPPPLFDRPLDAILLNSNRLRGPIPANL 695
SNNRFVG FP VVL+LPSL++LDLR+N+FEG IP LFD+ LDAI LN NR IP N+
Sbjct: 7354717 SNNRFVGKFPNVVLSLPSLKFLDLRYNEFEGSIPSKLFDKELDAIFLNHNRFMFGIPENM 7354896
Query: 696 GNSPASVLVLAHNRLGGCIPPSIGRMAATLNEIVLIDDDLTGCVPPQVGLLTKLTVFDVS 875
GNSP S LVLA N LGGCIP SIG M TLNEI+L +D+LTGC+PPQ+G L +TVFD+S
Sbjct: 7354897 GNSPVSALVLADNDLGGCIPGSIGLMGKTLNEIILSNDNLTGCLPPQIGNLKNVTVFDIS 7355076
Query: 876 GNHLQGPLPPAVGGMAVLQQLNVAGNLLRGPVPSAVC 986
N L GPLP ++G M L+QLNVA N G +PS++C
Sbjct: 7355077 FNRLSGPLPSSIGNMKSLEQLNVANNRFTGVIPSSIC 7355187
Score = 154 bits (330), Expect(3) = 2e-064
Identities = 62/117 (52%), Positives = 77/117 (65%)
Frame = +3 / -1
Query: 423 DLALLHLNSNRFCGVXXXXXXXXXXXXXXXXSNNRFVGAFPAVVLALPSLRYLDLRFNDF 602
DLAL H+NSNRFCG+ SNNRFVG FP V L+ PSL++LDLR+N+F
Sbjct: 2678975 DLALFHINSNRFCGIIPKSLSKLALMYEFDVSNNRFVGQFPEVSLSWPSLKFLDLRYNEF 2678796
Query: 603 EGPIPPPLFDRPLDAILLNSNRLRGPIPANLGNSPASVLVLAHNRLGGCIPPSIGRM 773
EG +P +FD+ LDAI LN+NR IP +G S ASV+ A+N+ GCIP SIG M
Sbjct: 2678795 EGSLPSEIFDKDLDAIFLNNNRFESVIPGTIGKSKASVVTFANNKFSGCIPKSIGNM 2678625
Score = 99.1 bits (210), Expect(3) = 4e-032
Identities = 49/110 (44%), Positives = 63/110 (57%)
Frame = -3 / -1
Query: 973 GTGPLSRFPATLSCWRTAIPPTAGGSGP*RWLPLTSNTVSFVSRPTCGGTQPVRSSSMRT 794
G P++ ATLSC + + P G+GP + L L S TV+F+ P CGG QPV+ S R
Sbjct: 7355174 GITPVNLLLATLSCSKLFMFPMLDGNGPLKRLKLISKTVTFLRFPICGGKQPVKLSLERM 7354995
Query: 793 ISLSVAAILPIDGGMQPPRRLCASTSTEAGELPRLAGMGPRRRLELRRMA 644
ISL V I PI GMQPPR L A T + GE P +G+ RL + +A
Sbjct: 7354994 ISLRVFPIKPILPGMQPPRSLSARTRADTGEFPMFSGIPNINRLWFKNIA 7354845
Score = 84.9 bits (179), Expect(2) = 3e-029
Identities = 32/68 (47%), Positives = 47/68 (69%)
Frame = +3 / -2
Query: 783 LNEIVLIDDDLTGCVPPQVGLLTKLTVFDVSGNHLQGPLPPAVGGMAVLQQLNVAGNLLR 962
L E++ +++ LTGC+P Q+G LT+ TVFDV N L GP+P + G + ++QLN+AGN
Sbjct: 2770972 LQEVLFLNNKLTGCLPYQIGNLTRATVFDVGFNQLTGPIPYSFGCLETMEQLNLAGNKFY 2770793
Query: 963 GPVPSAVC 986
G +P VC
Sbjct: 2770792 GTIPEIVC 2770769
Score = 83.5 bits (176), Expect(2) = 3e-029
Identities = 35/75 (46%), Positives = 47/75 (62%)
Frame = +3 / -1
Query: 516 SNNRFVGAFPAVVLALPSLRYLDLRFNDFEGPIPPPLFDRPLDAILLNSNRLRGPIPANL 695
SNN+ G FP VL +L +LDLRFN F G +PP +F+ LD + +N+N L +P NL
Sbjct: 2771354 SNNKLTGDFPTSVLKGNNLTFLDLRFNSFSGSVPPQVFNLDLDVLFINNNNLVQKLPLNL 2771175
Query: 696 GNSPASVLVLAHNRL 740
G+ A L A+NRL
Sbjct: 2771174 GSITALYLTFANNRL 2771130
Score = 73.0 bits (153), Expect(3) = 2e-064
Identities = 31/68 (45%), Positives = 43/68 (63%)
Frame = +3 / -1
Query: 783 LNEIVLIDDDLTGCVPPQVGLLTKLTVFDVSGNHLQGPLPPAVGGMAVLQQLNVAGNLLR 962
LNEIV ++LTGC P ++GLL +TVFD S N G LP + G+A ++QL+++ N L
Sbjct: 2678618 LNEIVFTGNNLTGCFPNEIGLLNNVTVFDASKNGFVGSLPSTLSGLASVEQLDLSHNKLT 2678439
Query: 963 GPVPSAVC 986
G V C
Sbjct: 2678438 GFVVDKFC 2678415
Score = 66.6 bits (139), Expect(2) = 1e-071
Identities = 23/33 (69%), Positives = 28/33 (84%)
Frame = +1 / +1
Query: 238 RTAIFSDPSNFTSNWAGPNVCAYNGIYCAPRPS 336
+ AIFSDP NFT+NW G +VC+YNGI+CAP PS
Sbjct: 7354438 KQAIFSDPFNFTANWNGSDVCSYNGIFCAPSPS 7354536
Score = 61.1 bits (127), Expect(3) = 2e-064
Identities = 21/39 (53%), Positives = 28/39 (71%)
Frame = +1 / -1
Query: 238 RTAIFSDPSNFTSNWAGPNVCAYNGIYCAPRPSDGALAV 354
+ AI+SDP T+NW G +VC+YNG+YCAP D +L V
Sbjct: 2679161 KKAIYSDPFKTTANWVGSDVCSYNGVYCAPALDDDSLTV 2679045
Score = 40.0 bits (81), Expect(3) = 4e-032
Identities = 20/49 (40%), Positives = 23/49 (46%)
Frame = -3 / -1
Query: 568 EGSASTTAGKAPTKXXXXXXXXXXXXXXXSVSGSTPQKRLELRWSSARS 422
EG TT G PTK +V G++PQKR ELR ARS
Sbjct: 7354769 EGKDKTTLGNFPTKRLLLKSSSKRSFMCLNVRGTSPQKRFELR*KRARS 7354623
Score = 39.6 bits (80), Expect(3) = 4e-032
Identities = 19/31 (61%), Positives = 21/31 (67%)
Frame = -2 / -1
Query: 335 EGRGAQ*MPLYAHTLGPAQLEVKLDGSEKMA 243
EG GAQ +PL T P QL VKL GSEK+A
Sbjct: 7354535 EGEGAQKIPL*EQTSEPFQLAVKLKGSEKIA 7354443
>ref|NM_117407.2| Arabidopsis thaliana unknown protein AT4G13340 mRNA, complete cds
Length = 2448
Score = 131 bits (281), Expect(5) = 7e-070
Identities = 52/86 (60%), Positives = 64/86 (74%)
Frame = +3 / +1
Query: 516 SNNRFVGAFPAVVLALPSLRYLDLRFNDFEGPIPPPLFDRPLDAILLNSNRLRGPIPANL 695
SNNRF G FP VVL LPSL++LDLRFN+FEG +P LF + LDAI +N NR R +P N
Sbjct: 508 SNNRFAGKFPTVVLQLPSLKFLDLRFNEFEGTVPKELFSKDLDAIFINHNRFRFELPENF 687
Query: 696 GNSPASVLVLAHNRLGGCIPPSIGRM 773
G+SP SV+VLA+NR GC+P S+ M
Sbjct: 688 GDSPVSVIVLANNRFHGCVPSSLVEM 765
Score = 89.0 bits (188), Expect(5) = 7e-070
Identities = 34/68 (50%), Positives = 49/68 (72%)
Frame = +3 / +1
Query: 783 LNEIVLIDDDLTGCVPPQVGLLTKLTVFDVSGNHLQGPLPPAVGGMAVLQQLNVAGNLLR 962
LNEI+ +++ L C+P +G L +TVFDVS N L GPLP +VG M ++QLNVA N+L
Sbjct: 772 LNEIIFMNNGLNSCLPSDIGRLKNVTVFDVSFNELVGPLPESVGEMVSVEQLNVAHNMLS 951
Query: 963 GPVPSAVC 986
G +P+++C
Sbjct: 952 GKIPASIC 975
Score = 58.8 bits (122), Expect(5) = 7e-070
Identities = 19/30 (63%), Positives = 24/30 (80%)
Frame = +1 / +1
Query: 238 RTAIFSDPSNFTSNWAGPNVCAYNGIYCAP 327
+ AI SDP+NFTSNW G NVC Y G++C+P
Sbjct: 229 KQAILSDPNNFTSNWIGSNVCNYTGVFCSP 318
Score = 34.5 bits (69), Expect(5) = 7e-070
Identities = 12/14 (85%), Positives = 13/14 (92%)
Frame = +3 / +1
Query: 423 DLALLHLNSNRFCG 464
DLAL H+NSNRFCG
Sbjct: 415 DLALFHVNSNRFCG 456
Score = 28.6 bits (56), Expect(5) = 7e-070
Identities = 10/15 (66%), Positives = 13/15 (86%)
Frame = +3 / +1
Query: 369 NHADIAGHIPADLPL 413
NHADIAG++P +L L
Sbjct: 364 NHADIAGYLPEELGL 408
>emb|AX506996.1| Sequence 1691 from Patent WO0216655
Length = 2283
Score = 131 bits (281), Expect(5) = 7e-070
Identities = 52/86 (60%), Positives = 64/86 (74%)
Frame = +3 / +1
Query: 516 SNNRFVGAFPAVVLALPSLRYLDLRFNDFEGPIPPPLFDRPLDAILLNSNRLRGPIPANL 695
SNNRF G FP VVL LPSL++LDLRFN+FEG +P LF + LDAI +N NR R +P N
Sbjct: 508 SNNRFAGKFPTVVLQLPSLKFLDLRFNEFEGTVPKELFSKDLDAIFINHNRFRFELPENF 687
Query: 696 GNSPASVLVLAHNRLGGCIPPSIGRM 773
G+SP SV+VLA+NR GC+P S+ M
Sbjct: 688 GDSPVSVIVLANNRFHGCVPSSLVEM 765
Score = 89.0 bits (188), Expect(5) = 7e-070
Identities = 34/68 (50%), Positives = 49/68 (72%)
Frame = +3 / +1
Query: 783 LNEIVLIDDDLTGCVPPQVGLLTKLTVFDVSGNHLQGPLPPAVGGMAVLQQLNVAGNLLR 962
LNEI+ +++ L C+P +G L +TVFDVS N L GPLP +VG M ++QLNVA N+L
Sbjct: 772 LNEIIFMNNGLNSCLPSDIGRLKNVTVFDVSFNELVGPLPESVGEMVSVEQLNVAHNMLS 951
Query: 963 GPVPSAVC 986
G +P+++C
Sbjct: 952 GKIPASIC 975
Score = 58.8 bits (122), Expect(5) = 7e-070
Identities = 19/30 (63%), Positives = 24/30 (80%)
Frame = +1 / +1
Query: 238 RTAIFSDPSNFTSNWAGPNVCAYNGIYCAP 327
+ AI SDP+NFTSNW G NVC Y G++C+P
Sbjct: 229 KQAILSDPNNFTSNWIGSNVCNYTGVFCSP 318
Score = 34.5 bits (69), Expect(5) = 7e-070
Identities = 12/14 (85%), Positives = 13/14 (92%)
Frame = +3 / +1
Query: 423 DLALLHLNSNRFCG 464
DLAL H+NSNRFCG
Sbjct: 415 DLALFHVNSNRFCG 456
Score = 28.6 bits (56), Expect(5) = 7e-070
Identities = 10/15 (66%), Positives = 13/15 (86%)
Frame = +3 / +1
Query: 369 NHADIAGHIPADLPL 413
NHADIAG++P +L L
Sbjct: 364 NHADIAGYLPEELGL 408
>emb|AL161536.2|ATCHRIV36 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 36
Length = 199634
Score = 131 bits (281), Expect(5) = 7e-070
Identities = 52/86 (60%), Positives = 64/86 (74%)
Frame = +3 / +3
Query: 516 SNNRFVGAFPAVVLALPSLRYLDLRFNDFEGPIPPPLFDRPLDAILLNSNRLRGPIPANL 695
SNNRF G FP VVL LPSL++LDLRFN+FEG +P LF + LDAI +N NR R +P N
Sbjct: 45858 SNNRFAGKFPTVVLQLPSLKFLDLRFNEFEGTVPKELFSKDLDAIFINHNRFRFELPENF 46037
Query: 696 GNSPASVLVLAHNRLGGCIPPSIGRM 773
G+SP SV+VLA+NR GC+P S+ M
Sbjct: 46038 GDSPVSVIVLANNRFHGCVPSSLVEM 46115
Score = 89.0 bits (188), Expect(5) = 7e-070
Identities = 34/68 (50%), Positives = 49/68 (72%)
Frame = +3 / +3
Query: 783 LNEIVLIDDDLTGCVPPQVGLLTKLTVFDVSGNHLQGPLPPAVGGMAVLQQLNVAGNLLR 962
LNEI+ +++ L C+P +G L +TVFDVS N L GPLP +VG M ++QLNVA N+L
Sbjct: 46122 LNEIIFMNNGLNSCLPSDIGRLKNVTVFDVSFNELVGPLPESVGEMVSVEQLNVAHNMLS 46301
Query: 963 GPVPSAVC 986
G +P+++C
Sbjct: 46302 GKIPASIC 46325
Score = 58.8 bits (122), Expect(5) = 7e-070
Identities = 19/30 (63%), Positives = 24/30 (80%)
Frame = +1 / +3
Query: 238 RTAIFSDPSNFTSNWAGPNVCAYNGIYCAP 327
+ AI SDP+NFTSNW G NVC Y G++C+P
Sbjct: 45579 KQAILSDPNNFTSNWIGSNVCNYTGVFCSP 45668
Score = 34.5 bits (69), Expect(5) = 7e-070
Identities = 12/14 (85%), Positives = 13/14 (92%)
Frame = +3 / +3
Query: 423 DLALLHLNSNRFCG 464
DLAL H+NSNRFCG
Sbjct: 45765 DLALFHVNSNRFCG 45806
Score = 28.6 bits (56), Expect(5) = 7e-070
Identities = 10/15 (66%), Positives = 13/15 (86%)
Frame = +3 / +3
Query: 369 NHADIAGHIPADLPL 413
NHADIAG++P +L L
Sbjct: 45714 NHADIAGYLPEELGL 45758
>emb|AL049608.1|ATT9E8 Arabidopsis thaliana DNA chromosome 4, BAC clone T9E8, partial sequence
(ESSA project)
Length = 95432
Score = 131 bits (281), Expect(5) = 7e-070
Identities = 52/86 (60%), Positives = 64/86 (74%)
Frame = +3 / +2
Query: 516 SNNRFVGAFPAVVLALPSLRYLDLRFNDFEGPIPPPLFDRPLDAILLNSNRLRGPIPANL 695
SNNRF G FP VVL LPSL++LDLRFN+FEG +P LF + LDAI +N NR R +P N
Sbjct: 29879 SNNRFAGKFPTVVLQLPSLKFLDLRFNEFEGTVPKELFSKDLDAIFINHNRFRFELPENF 30058
Query: 696 GNSPASVLVLAHNRLGGCIPPSIGRM 773
G+SP SV+VLA+NR GC+P S+ M
Sbjct: 30059 GDSPVSVIVLANNRFHGCVPSSLVEM 30136
Score = 89.0 bits (188), Expect(5) = 7e-070
Identities = 34/68 (50%), Positives = 49/68 (72%)
Frame = +3 / +2
Query: 783 LNEIVLIDDDLTGCVPPQVGLLTKLTVFDVSGNHLQGPLPPAVGGMAVLQQLNVAGNLLR 962
LNEI+ +++ L C+P +G L +TVFDVS N L GPLP +VG M ++QLNVA N+L
Sbjct: 30143 LNEIIFMNNGLNSCLPSDIGRLKNVTVFDVSFNELVGPLPESVGEMVSVEQLNVAHNMLS 30322
Query: 963 GPVPSAVC 986
G +P+++C
Sbjct: 30323 GKIPASIC 30346
Score = 58.8 bits (122), Expect(5) = 7e-070
Identities = 19/30 (63%), Positives = 24/30 (80%)
Frame = +1 / +2
Query: 238 RTAIFSDPSNFTSNWAGPNVCAYNGIYCAP 327
+ AI SDP+NFTSNW G NVC Y G++C+P
Sbjct: 29600 KQAILSDPNNFTSNWIGSNVCNYTGVFCSP 29689
Score = 34.5 bits (69), Expect(5) = 7e-070
Identities = 12/14 (85%), Positives = 13/14 (92%)
Frame = +3 / +2
Query: 423 DLALLHLNSNRFCG 464
DLAL H+NSNRFCG
Sbjct: 29786 DLALFHVNSNRFCG 29827
Score = 28.6 bits (56), Expect(5) = 7e-070
Identities = 10/15 (66%), Positives = 13/15 (86%)
Frame = +3 / +2
Query: 369 NHADIAGHIPADLPL 413
NHADIAG++P +L L
Sbjct: 29735 NHADIAGYLPEELGL 29779
>ref|NM_117983.2| Arabidopsis thaliana protein binding AT4G18670 mRNA, complete cds
Length = 2976
Score = 136 bits (291), Expect(5) = 3e-069
Identities = 54/86 (62%), Positives = 66/86 (76%)
Frame = +3 / +1
Query: 516 SNNRFVGAFPAVVLALPSLRYLDLRFNDFEGPIPPPLFDRPLDAILLNSNRLRGPIPANL 695
SNNRF G FP VVL LPSL++LDLRFN+FEGP+P LF + LDAI +N NR R +P NL
Sbjct: 544 SNNRFAGIFPTVVLQLPSLKFLDLRFNEFEGPVPRELFSKDLDAIFINHNRFRFELPDNL 723
Query: 696 GNSPASVLVLAHNRLGGCIPPSIGRM 773
G+SP SV+V+A+N GCIP S+G M
Sbjct: 724 GDSPVSVIVVANNHFHGCIPTSLGDM 801
Score = 80.8 bits (170), Expect(5) = 3e-069
Identities = 30/68 (44%), Positives = 44/68 (64%)
Frame = +3 / +1
Query: 783 LNEIVLIDDDLTGCVPPQVGLLTKLTVFDVSGNHLQGPLPPAVGGMAVLQQLNVAGNLLR 962
L EI+ +++ C+P Q+G L +TVFD S N L G LP ++GGM ++QLNVA N
Sbjct: 808 LEEIIFMENGFNSCLPSQIGRLKNVTVFDFSFNELVGSLPASIGGMVSMEQLNVAHNRFS 987
Query: 963 GPVPSAVC 986
G +P+ +C
Sbjct: 988 GKIPATIC 1011
Score = 59.7 bits (124), Expect(5) = 3e-069
Identities = 19/30 (63%), Positives = 25/30 (83%)
Frame = +1 / +1
Query: 238 RTAIFSDPSNFTSNWAGPNVCAYNGIYCAP 327
+ AI SDP+NFT+NW G +VC+Y G+YCAP
Sbjct: 265 KQAILSDPNNFTTNWIGSDVCSYTGVYCAP 354
Score = 35.0 bits (70), Expect(5) = 3e-069
Identities = 12/14 (85%), Positives = 13/14 (92%)
Frame = +3 / +1
Query: 423 DLALLHLNSNRFCG 464
DLAL H+NSNRFCG
Sbjct: 451 DLALFHINSNRFCG 492
Score = 28.6 bits (56), Expect(5) = 3e-069
Identities = 10/15 (66%), Positives = 13/15 (86%)
Frame = +3 / +1
Query: 369 NHADIAGHIPADLPL 413
NHADIAG++P +L L
Sbjct: 400 NHADIAGYLPQELGL 444
>emb|AL161549.2|ATCHRIV49 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 49
Length = 199075
Score = 136 bits (291), Expect(5) = 3e-069
Identities = 54/86 (62%), Positives = 66/86 (76%)
Frame = +3 / -3
Query: 516 SNNRFVGAFPAVVLALPSLRYLDLRFNDFEGPIPPPLFDRPLDAILLNSNRLRGPIPANL 695
SNNRF G FP VVL LPSL++LDLRFN+FEGP+P LF + LDAI +N NR R +P NL
Sbjct: 56087 SNNRFAGIFPTVVLQLPSLKFLDLRFNEFEGPVPRELFSKDLDAIFINHNRFRFELPDNL 55908
Query: 696 GNSPASVLVLAHNRLGGCIPPSIGRM 773
G+SP SV+V+A+N GCIP S+G M
Sbjct: 55907 GDSPVSVIVVANNHFHGCIPTSLGDM 55830
Score = 80.8 bits (170), Expect(5) = 3e-069
Identities = 30/68 (44%), Positives = 44/68 (64%)
Frame = +3 / -3
Query: 783 LNEIVLIDDDLTGCVPPQVGLLTKLTVFDVSGNHLQGPLPPAVGGMAVLQQLNVAGNLLR 962
L EI+ +++ C+P Q+G L +TVFD S N L G LP ++GGM ++QLNVA N
Sbjct: 55823 LEEIIFMENGFNSCLPSQIGRLKNVTVFDFSFNELVGSLPASIGGMVSMEQLNVAHNRFS 55644
Query: 963 GPVPSAVC 986
G +P+ +C
Sbjct: 55643 GKIPATIC 55620
Score = 59.7 bits (124), Expect(5) = 3e-069
Identities = 19/30 (63%), Positives = 25/30 (83%)
Frame = +1 / -3
Query: 238 RTAIFSDPSNFTSNWAGPNVCAYNGIYCAP 327
+ AI SDP+NFT+NW G +VC+Y G+YCAP
Sbjct: 56366 KQAILSDPNNFTTNWIGSDVCSYTGVYCAP 56277
Score = 35.0 bits (70), Expect(5) = 3e-069
Identities = 12/14 (85%), Positives = 13/14 (92%)
Frame = +3 / -3
Query: 423 DLALLHLNSNRFCG 464
DLAL H+NSNRFCG
Sbjct: 56180 DLALFHINSNRFCG 56139
Score = 28.6 bits (56), Expect(5) = 3e-069
Identities = 10/15 (66%), Positives = 13/15 (86%)
Frame = +3 / -3
Query: 369 NHADIAGHIPADLPL 413
NHADIAG++P +L L
Sbjct: 56231 NHADIAGYLPQELGL 56187
>emb|AL035526.1|ATF28A21 Arabidopsis thaliana DNA chromosome 4, BAC clone F28A21 (ESSA project)
Length = 94301
Score = 136 bits (291), Expect(5) = 4e-069
Identities = 54/86 (62%), Positives = 66/86 (76%)
Frame = +3 / -1
Query: 516 SNNRFVGAFPAVVLALPSLRYLDLRFNDFEGPIPPPLFDRPLDAILLNSNRLRGPIPANL 695
SNNRF G FP VVL LPSL++LDLRFN+FEGP+P LF + LDAI +N NR R +P NL
Sbjct: 36806 SNNRFAGIFPTVVLQLPSLKFLDLRFNEFEGPVPRELFSKDLDAIFINHNRFRFELPDNL 36627
Query: 696 GNSPASVLVLAHNRLGGCIPPSIGRM 773
G+SP SV+V+A+N GCIP S+G M
Sbjct: 36626 GDSPVSVIVVANNHFHGCIPTSLGDM 36549
Score = 80.8 bits (170), Expect(5) = 4e-069
Identities = 30/68 (44%), Positives = 44/68 (64%)
Frame = +3 / -1
Query: 783 LNEIVLIDDDLTGCVPPQVGLLTKLTVFDVSGNHLQGPLPPAVGGMAVLQQLNVAGNLLR 962
L EI+ +++ C+P Q+G L +TVFD S N L G LP ++GGM ++QLNVA N
Sbjct: 36542 LEEIIFMENGFNSCLPSQIGRLKNVTVFDFSFNELVGSLPASIGGMVSMEQLNVAHNRFS 36363
Query: 963 GPVPSAVC 986
G +P+ +C
Sbjct: 36362 GKIPATIC 36339
Score = 59.7 bits (124), Expect(5) = 4e-069
Identities = 19/30 (63%), Positives = 25/30 (83%)
Frame = +1 / -1
Query: 238 RTAIFSDPSNFTSNWAGPNVCAYNGIYCAP 327
+ AI SDP+NFT+NW G +VC+Y G+YCAP
Sbjct: 37085 KQAILSDPNNFTTNWIGSDVCSYTGVYCAP 36996
Score = 35.0 bits (70), Expect(5) = 4e-069
Identities = 12/14 (85%), Positives = 13/14 (92%)
Frame = +3 / -1
Query: 423 DLALLHLNSNRFCG 464
DLAL H+NSNRFCG
Sbjct: 36899 DLALFHINSNRFCG 36858
Score = 28.6 bits (56), Expect(5) = 4e-069
Identities = 10/15 (66%), Positives = 13/15 (86%)
Frame = +3 / -1
Query: 369 NHADIAGHIPADLPL 413
NHADIAG++P +L L
Sbjct: 36950 NHADIAGYLPQELGL 36906
>gb|G72110.1|G72110 At-8.5BJ-540 Arabidopsis genomic DNA (B. Jordan) Arabidopsis
thaliana STS genomic, sequence tagged site
Length = 897
Score = 249 bits (538), Expect(2) = 7e-069
Identities = 100/157 (63%), Positives = 123/157 (78%)
Frame = +3 / +2
Query: 516 SNNRFVGAFPAVVLALPSLRYLDLRFNDFEGPIPPPLFDRPLDAILLNSNRLRGPIPANL 695
SNNRFVG FP VVL+LPSL++LDLR+N+FEG IP LFDR LDAI LN NR R IP N+
Sbjct: 149 SNNRFVGKFPKVVLSLPSLKFLDLRYNEFEGKIPSKLFDRELDAIFLNHNRFRFGIPKNM 328
Query: 696 GNSPASVLVLAHNRLGGCIPPSIGRMAATLNEIVLIDDDLTGCVPPQVGLLTKLTVFDVS 875
GNSP S LVLA N LGGCIP SIG+M TLNE++L +D+LTGC+PPQ+G L K+TVFD++
Sbjct: 329 GNSPVSALVLADNNLGGCIPGSIGQMGKTLNELILSNDNLTGCLPPQIGNLKKVTVFDIT 508
Query: 876 GNHLQGPLPPAVGGMAVLQQLNVAGNLLRGPVPSAVC 986
N LQGPLP +VG M L++L+VA N G +P ++C
Sbjct: 509 SNRLQGPLPSSVGNMKSLEELHVANNAFTGVIPPSIC 619
Score = 87.7 bits (185), Expect(2) = 1e-022
Identities = 48/110 (43%), Positives = 58/110 (52%)
Frame = -3 / -1
Query: 973 GTGPLSRFPATLSCWRTAIPPTAGGSGP*RWLPLTSNTVSFVSRPTCGGTQPVRSSSMRT 794
G P+ AT S R + PT G+GP R + S TV+F+ P GG QPV+ S R
Sbjct: 606 GITPVKALLAT*SSSRLFMLPTLDGNGPCRRFEVMSKTVTFLRFPI*GGKQPVKLSLERI 427
Query: 793 ISLSVAAILPIDGGMQPPRRLCASTSTEAGELPRLAGMGPRRRLELRRMA 644
SLSV I PI GM PPR L A T E GE P G+ R RL + +A
Sbjct: 426 SSLSVFPI*PILPGMHPPRLLSARTRAETGEFPMFLGIPNRNRLWFKNIA 277
Score = 41.8 bits (85), Expect(2) = 1e-022
Identities = 19/49 (38%), Positives = 23/49 (46%)
Frame = -3 / -1
Query: 568 EGSASTTAGKAPTKXXXXXXXXXXXXXXXSVSGSTPQKRLELRWSSARS 422
EG TT G PT +V G++PQKR EL W+ ARS
Sbjct: 201 EGKERTTLGNLPTNRLLLRSSS*RSFMRLNVRGTSPQKRFELMWNRARS 55
Score = 35.0 bits (70), Expect(2) = 7e-069
Identities = 12/14 (85%), Positives = 13/14 (92%)
Frame = +3 / +2
Query: 423 DLALLHLNSNRFCG 464
DLAL H+NSNRFCG
Sbjct: 56 DLALFHINSNRFCG 97
>gb|AC007504.3| Arabidopsis thaliana chromosome I BAC F13F21 genomic sequence, complete
sequence
Length = 125021
Score = 154 bits (330), Expect(4) = 2e-068
Identities = 62/117 (52%), Positives = 77/117 (65%)
Frame = +3 / +1
Query: 423 DLALLHLNSNRFCGVXXXXXXXXXXXXXXXXSNNRFVGAFPAVVLALPSLRYLDLRFNDF 602
DLAL H+NSNRFCG+ SNNRFVG FP V L+ PSL++LDLR+N+F
Sbjct: 24196 DLALFHINSNRFCGIIPKSLSKLALMYEFDVSNNRFVGQFPEVSLSWPSLKFLDLRYNEF 24375
Query: 603 EGPIPPPLFDRPLDAILLNSNRLRGPIPANLGNSPASVLVLAHNRLGGCIPPSIGRM 773
EG +P +FD+ LDAI LN+NR IP +G S ASV+ A+N+ GCIP SIG M
Sbjct: 24376 EGSLPSEIFDKDLDAIFLNNNRFESVIPGTIGKSKASVVTFANNKFSGCIPKSIGNM 24546
Score = 73.0 bits (153), Expect(4) = 2e-068
Identities = 31/68 (45%), Positives = 43/68 (63%)
Frame = +3 / +1
Query: 783 LNEIVLIDDDLTGCVPPQVGLLTKLTVFDVSGNHLQGPLPPAVGGMAVLQQLNVAGNLLR 962
LNEIV ++LTGC P ++GLL +TVFD S N G LP + G+A ++QL+++ N L
Sbjct: 24553 LNEIVFTGNNLTGCFPNEIGLLNNVTVFDASKNGFVGSLPSTLSGLASVEQLDLSHNKLT 24732
Query: 963 GPVPSAVC 986
G V C
Sbjct: 24733 GFVVDKFC 24756
Score = 61.1 bits (127), Expect(4) = 2e-068
Identities = 21/39 (53%), Positives = 28/39 (71%)
Frame = +1 / +1
Query: 238 RTAIFSDPSNFTSNWAGPNVCAYNGIYCAPRPSDGALAV 354
+ AI+SDP T+NW G +VC+YNG+YCAP D +L V
Sbjct: 24010 KKAIYSDPFKTTANWVGSDVCSYNGVYCAPALDDDSLTV 24126
Score = 31.3 bits (62), Expect(4) = 2e-068
Identities = 11/15 (73%), Positives = 13/15 (86%)
Frame = +3 / +1
Query: 369 NHADIAGHIPADLPL 413
NHADIAGH+P +L L
Sbjct: 24145 NHADIAGHLPPELGL 24189
>gb|AC006438.4| Arabidopsis thaliana chromosome 2 clone F19G14 map mi398, complete
sequence
Length = 91106
Score = 157 bits (338), Expect(4) = 2e-068
Identities = 62/117 (52%), Positives = 80/117 (68%)
Frame = +3 / +2
Query: 423 DLALLHLNSNRFCGVXXXXXXXXXXXXXXXXSNNRFVGAFPAVVLALPSLRYLDLRFNDF 602
D+A+ HLNSNRFCG+ SNNRFVG FP+VVL+ P+++++D+R+NDF
Sbjct: 36596 DVAMFHLNSNRFCGIIPKSFEKLSLMHEFDVSNNRFVGPFPSVVLSWPAVKFIDVRYNDF 36775
Query: 603 EGPIPPPLFDRPLDAILLNSNRLRGPIPANLGNSPASVLVLAHNRLGGCIPPSIGRM 773
EG +PP LF + LDAI LN+NR IP +LG S ASV+ AHN+ GCIP SIG M
Sbjct: 36776 EGQVPPELFKKDLDAIFLNNNRFTSTIPDSLGESSASVVTFAHNKFSGCIPRSIGNM 36946
Score = 73.5 bits (154), Expect(4) = 2e-068
Identities = 27/68 (39%), Positives = 42/68 (61%)
Frame = +3 / +2
Query: 783 LNEIVLIDDDLTGCVPPQVGLLTKLTVFDVSGNHLQGPLPPAVGGMAVLQQLNVAGNLLR 962
LNEI+ D+ L GC P ++G L + VFD S N G LPP+ G+ +++ +++GN L
Sbjct: 36953 LNEIIFKDNSLGGCFPSEIGKLANVNVFDASMNSFTGVLPPSFVGLTSMEEFDISGNKLT 37132
Query: 963 GPVPSAVC 986
G +P +C
Sbjct: 37133 GFIPENIC 37156
Score = 59.3 bits (123), Expect(4) = 2e-068
Identities = 20/39 (51%), Positives = 27/39 (69%)
Frame = +1 / +2
Query: 238 RTAIFSDPSNFTSNWAGPNVCAYNGIYCAPRPSDGALAV 354
+ A++SDP N T NW GP+VC Y G++CAP D +AV
Sbjct: 36410 KKAVYSDPFNTTGNWHGPHVCGYTGVFCAPALDDPDVAV 36526
Score = 29.0 bits (57), Expect(4) = 2e-068
Identities = 11/15 (73%), Positives = 13/15 (86%)
Frame = +3 / +2
Query: 369 NHADIAGHIPADLPL 413
N ADIAGH+PA+L L
Sbjct: 36545 NGADIAGHLPAELGL 36589
>ref|NM_103837.1| Arabidopsis thaliana structural constituent of cell wall AT1G49490
mRNA, complete cds
Length = 2544
Score = 154 bits (330), Expect(4) = 2e-068
Identities = 62/117 (52%), Positives = 77/117 (65%)
Frame = +3 / +1
Query: 423 DLALLHLNSNRFCGVXXXXXXXXXXXXXXXXSNNRFVGAFPAVVLALPSLRYLDLRFNDF 602
DLAL H+NSNRFCG+ SNNRFVG FP V L+ PSL++LDLR+N+F
Sbjct: 394 DLALFHINSNRFCGIIPKSLSKLALMYEFDVSNNRFVGQFPEVSLSWPSLKFLDLRYNEF 573
Query: 603 EGPIPPPLFDRPLDAILLNSNRLRGPIPANLGNSPASVLVLAHNRLGGCIPPSIGRM 773
EG +P +FD+ LDAI LN+NR IP +G S ASV+ A+N+ GCIP SIG M
Sbjct: 574 EGSLPSEIFDKDLDAIFLNNNRFESVIPGTIGKSKASVVTFANNKFSGCIPKSIGNM 744
Score = 73.0 bits (153), Expect(4) = 2e-068
Identities = 31/68 (45%), Positives = 43/68 (63%)
Frame = +3 / +1
Query: 783 LNEIVLIDDDLTGCVPPQVGLLTKLTVFDVSGNHLQGPLPPAVGGMAVLQQLNVAGNLLR 962
LNEIV ++LTGC P ++GLL +TVFD S N G LP + G+A ++QL+++ N L
Sbjct: 751 LNEIVFTGNNLTGCFPNEIGLLNNVTVFDASKNGFVGSLPSTLSGLASVEQLDLSHNKLT 930
Query: 963 GPVPSAVC 986
G V C
Sbjct: 931 GFVVDKFC 954
Score = 61.1 bits (127), Expect(4) = 2e-068
Identities = 21/39 (53%), Positives = 28/39 (71%)
Frame = +1 / +1
Query: 238 RTAIFSDPSNFTSNWAGPNVCAYNGIYCAPRPSDGALAV 354
+ AI+SDP T+NW G +VC+YNG+YCAP D +L V
Sbjct: 208 KKAIYSDPFKTTANWVGSDVCSYNGVYCAPALDDDSLTV 324
Score = 31.3 bits (62), Expect(4) = 2e-068
Identities = 11/15 (73%), Positives = 13/15 (86%)
Frame = +3 / +1
Query: 369 NHADIAGHIPADLPL 413
NHADIAGH+P +L L
Sbjct: 343 NHADIAGHLPPELGL 387
>ref|NM_127148.1| Arabidopsis thaliana structural constituent of cell wall AT2G15880
mRNA, complete cds
Length = 2184
Score = 157 bits (338), Expect(4) = 2e-068
Identities = 62/117 (52%), Positives = 80/117 (68%)
Frame = +3 / +1
Query: 423 DLALLHLNSNRFCGVXXXXXXXXXXXXXXXXSNNRFVGAFPAVVLALPSLRYLDLRFNDF 602
D+A+ HLNSNRFCG+ SNNRFVG FP+VVL+ P+++++D+R+NDF
Sbjct: 397 DVAMFHLNSNRFCGIIPKSFEKLSLMHEFDVSNNRFVGPFPSVVLSWPAVKFIDVRYNDF 576
Query: 603 EGPIPPPLFDRPLDAILLNSNRLRGPIPANLGNSPASVLVLAHNRLGGCIPPSIGRM 773
EG +PP LF + LDAI LN+NR IP +LG S ASV+ AHN+ GCIP SIG M
Sbjct: 577 EGQVPPELFKKDLDAIFLNNNRFTSTIPDSLGESSASVVTFAHNKFSGCIPRSIGNM 747
Score = 73.5 bits (154), Expect(4) = 2e-068
Identities = 27/68 (39%), Positives = 42/68 (61%)
Frame = +3 / +1
Query: 783 LNEIVLIDDDLTGCVPPQVGLLTKLTVFDVSGNHLQGPLPPAVGGMAVLQQLNVAGNLLR 962
LNEI+ D+ L GC P ++G L + VFD S N G LPP+ G+ +++ +++GN L
Sbjct: 754 LNEIIFKDNSLGGCFPSEIGKLANVNVFDASMNSFTGVLPPSFVGLTSMEEFDISGNKLT 933
Query: 963 GPVPSAVC 986
G +P +C
Sbjct: 934 GFIPENIC 957
Score = 59.3 bits (123), Expect(4) = 2e-068
Identities = 20/39 (51%), Positives = 27/39 (69%)
Frame = +1 / +1
Query: 238 RTAIFSDPSNFTSNWAGPNVCAYNGIYCAPRPSDGALAV 354
+ A++SDP N T NW GP+VC Y G++CAP D +AV
Sbjct: 211 KKAVYSDPFNTTGNWHGPHVCGYTGVFCAPALDDPDVAV 327
Score = 29.0 bits (57), Expect(4) = 2e-068
Identities = 11/15 (73%), Positives = 13/15 (86%)
Frame = +3 / +1
Query: 369 NHADIAGHIPADLPL 413
N ADIAGH+PA+L L
Sbjct: 346 NGADIAGHLPAELGL 390
>dbj|AP002048.1| Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MXP5
Length = 35471
Score = 128 bits (275), Expect(5) = 8e-068
Identities = 52/86 (60%), Positives = 63/86 (73%)
Frame = +3 / -2
Query: 516 SNNRFVGAFPAVVLALPSLRYLDLRFNDFEGPIPPPLFDRPLDAILLNSNRLRGPIPANL 695
SNNRF G FP VVL LPSL++LDLRFN+FEG +P LF + LDAI +N NR R +P N
Sbjct: 28954 SNNRFAGKFPTVVLHLPSLKFLDLRFNEFEGTVPKELFSKNLDAIFINHNRFRFELPENF 28775
Query: 696 GNSPASVLVLAHNRLGGCIPPSIGRM 773
G+SP SV+VLA+N GCIP S+ M
Sbjct: 28774 GDSPVSVIVLANNHFHGCIPTSLVEM 28697
Score = 93.6 bits (198), Expect(5) = 8e-068
Identities = 36/68 (52%), Positives = 50/68 (73%)
Frame = +3 / -2
Query: 783 LNEIVLIDDDLTGCVPPQVGLLTKLTVFDVSGNHLQGPLPPAVGGMAVLQQLNVAGNLLR 962
LNEI+ +++ L C+P +G L +TVFDVS N L GPLP +VGGM ++QLNVA NLL
Sbjct: 28690 LNEIIFMNNGLNSCLPADIGRLKNVTVFDVSFNELVGPLPESVGGMVEVEQLNVAHNLLS 28511
Query: 963 GPVPSAVC 986
G +P+++C
Sbjct: 28510 GKIPASIC 28487
Score = 50.1 bits (103), Expect(5) = 8e-068
Identities = 16/29 (55%), Positives = 21/29 (72%)
Frame = +1 / -2
Query: 238 RTAIFSDPSNFTSNWAGPNVCAYNGIYCA 324
+ AI SDP+N T NW G NVC Y G++C+
Sbjct: 29233 KQAILSDPNNITVNWIGSNVCNYTGVFCS 29147
Score = 34.5 bits (69), Expect(5) = 8e-068
Identities = 12/14 (85%), Positives = 13/14 (92%)
Frame = +3 / -2
Query: 423 DLALLHLNSNRFCG 464
DLAL H+NSNRFCG
Sbjct: 29047 DLALFHVNSNRFCG 29006
Score = 28.6 bits (56), Expect(5) = 8e-068
Identities = 10/15 (66%), Positives = 13/15 (86%)
Frame = +3 / -2
Query: 369 NHADIAGHIPADLPL 413
NHADIAG++P +L L
Sbjct: 29098 NHADIAGYLPEELGL 29054
>ref|NM_113355.1| Arabidopsis thaliana protein binding AT3G24480 mRNA, complete cds
Length = 1485
Score = 128 bits (275), Expect(5) = 9e-068
Identities = 52/86 (60%), Positives = 63/86 (73%)
Frame = +3 / +1
Query: 516 SNNRFVGAFPAVVLALPSLRYLDLRFNDFEGPIPPPLFDRPLDAILLNSNRLRGPIPANL 695
SNNRF G FP VVL LPSL++LDLRFN+FEG +P LF + LDAI +N NR R +P N
Sbjct: 532 SNNRFAGKFPTVVLHLPSLKFLDLRFNEFEGTVPKELFSKNLDAIFINHNRFRFELPENF 711
Query: 696 GNSPASVLVLAHNRLGGCIPPSIGRM 773
G+SP SV+VLA+N GCIP S+ M
Sbjct: 712 GDSPVSVIVLANNHFHGCIPTSLVEM 789
Score = 93.6 bits (198), Expect(5) = 9e-068
Identities = 36/68 (52%), Positives = 50/68 (73%)
Frame = +3 / +1
Query: 783 LNEIVLIDDDLTGCVPPQVGLLTKLTVFDVSGNHLQGPLPPAVGGMAVLQQLNVAGNLLR 962
LNEI+ +++ L C+P +G L +TVFDVS N L GPLP +VGGM ++QLNVA NLL
Sbjct: 796 LNEIIFMNNGLNSCLPADIGRLKNVTVFDVSFNELVGPLPESVGGMVEVEQLNVAHNLLS 975
Query: 963 GPVPSAVC 986
G +P+++C
Sbjct: 976 GKIPASIC 999
Score = 50.1 bits (103), Expect(5) = 9e-068
Identities = 16/29 (55%), Positives = 21/29 (72%)
Frame = +1 / +1
Query: 238 RTAIFSDPSNFTSNWAGPNVCAYNGIYCA 324
+ AI SDP+N T NW G NVC Y G++C+
Sbjct: 253 KQAILSDPNNITVNWIGSNVCNYTGVFCS 339
Score = 34.5 bits (69), Expect(5) = 9e-068
Identities = 12/14 (85%), Positives = 13/14 (92%)
Frame = +3 / +1
Query: 423 DLALLHLNSNRFCG 464
DLAL H+NSNRFCG
Sbjct: 439 DLALFHVNSNRFCG 480
Score = 28.6 bits (56), Expect(5) = 9e-068
Identities = 10/15 (66%), Positives = 13/15 (86%)
Frame = +3 / +1
Query: 369 NHADIAGHIPADLPL 413
NHADIAG++P +L L
Sbjct: 388 NHADIAGYLPEELGL 432
>emb|AL161584.2|ATCHRIV80 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 80
Length = 192861
Score = 133 bits (286), Expect(5) = 2e-067
Identities = 54/86 (62%), Positives = 63/86 (73%)
Frame = +3 / -2
Query: 516 SNNRFVGAFPAVVLALPSLRYLDLRFNDFEGPIPPPLFDRPLDAILLNSNRLRGPIPANL 695
SNNRFVG FP VVL+ P ++Y DLRFNDFEG +PP LF + LDAI LN NR IP +L
Sbjct: 114884 SNNRFVGPFPNVVLSWPDVKYFDLRFNDFEGQVPPELFKKELDAIFLNDNRFTSVIPESL 114705
Query: 696 GNSPASVLVLAHNRLGGCIPPSIGRM 773
G SPASV+ A+N+ GCIP SIG M
Sbjct: 114704 GESPASVVTFANNKFTGCIPKSIGNM 114627
Score = 78.0 bits (164), Expect(5) = 2e-067
Identities = 30/68 (44%), Positives = 46/68 (67%)
Frame = +3 / -2
Query: 783 LNEIVLIDDDLTGCVPPQVGLLTKLTVFDVSGNHLQGPLPPAVGGMAVLQQLNVAGNLLR 962
LNEIV +D+DL GC P ++G L+ +TVFD S N G LP + G+ +++++++GN L
Sbjct: 114620 LNEIVFMDNDLGGCFPSEIGKLSNVTVFDASKNSFIGRLPTSFVGLTSVEEIDISGNKLT 114441
Query: 963 GPVPSAVC 986
G VP +C
Sbjct: 114440 GLVPHNIC 114417
Score = 58.3 bits (121), Expect(5) = 2e-067
Identities = 21/39 (53%), Positives = 25/39 (64%)
Frame = +1 / -2
Query: 238 RTAIFSDPSNFTSNWAGPNVCAYNGIYCAPRPSDGALAV 354
+ AIFSDP N T NW GP+VC Y G+ CAP D + V
Sbjct: 115163 KKAIFSDPFNTTGNWHGPHVCGYTGVVCAPALDDSDVTV 115047
Score = 35.0 bits (70), Expect(5) = 2e-067
Identities = 11/15 (73%), Positives = 14/15 (93%)
Frame = +3 / -2
Query: 423 DLALLHLNSNRFCGV 467
D+A+ HLNSNRFCG+
Sbjct: 114977 DVAMFHLNSNRFCGI 114933
Score = 29.0 bits (57), Expect(5) = 2e-067
Identities = 11/15 (73%), Positives = 13/15 (86%)
Frame = +3 / -2
Query: 369 NHADIAGHIPADLPL 413
N ADIAGH+PA+L L
Sbjct: 115028 NGADIAGHLPAELGL 114984
>emb|AL031032.1|ATF17I5 Arabidopsis thaliana DNA chromosome 4, BAC clone F17I5 (ESSA project)
Length = 86748
Score = 133 bits (286), Expect(5) = 2e-067
Identities = 54/86 (62%), Positives = 63/86 (73%)
Frame = +3 / -3
Query: 516 SNNRFVGAFPAVVLALPSLRYLDLRFNDFEGPIPPPLFDRPLDAILLNSNRLRGPIPANL 695
SNNRFVG FP VVL+ P ++Y DLRFNDFEG +PP LF + LDAI LN NR IP +L
Sbjct: 65860 SNNRFVGPFPNVVLSWPDVKYFDLRFNDFEGQVPPELFKKELDAIFLNDNRFTSVIPESL 65681
Query: 696 GNSPASVLVLAHNRLGGCIPPSIGRM 773
G SPASV+ A+N+ GCIP SIG M
Sbjct: 65680 GESPASVVTFANNKFTGCIPKSIGNM 65603
Score = 78.0 bits (164), Expect(5) = 2e-067
Identities = 30/68 (44%), Positives = 46/68 (67%)
Frame = +3 / -3
Query: 783 LNEIVLIDDDLTGCVPPQVGLLTKLTVFDVSGNHLQGPLPPAVGGMAVLQQLNVAGNLLR 962
LNEIV +D+DL GC P ++G L+ +TVFD S N G LP + G+ +++++++GN L
Sbjct: 65596 LNEIVFMDNDLGGCFPSEIGKLSNVTVFDASKNSFIGRLPTSFVGLTSVEEIDISGNKLT 65417
Query: 963 GPVPSAVC 986
G VP +C
Sbjct: 65416 GLVPHNIC 65393
Score = 58.3 bits (121), Expect(5) = 2e-067
Identities = 21/39 (53%), Positives = 25/39 (64%)
Frame = +1 / -3
Query: 238 RTAIFSDPSNFTSNWAGPNVCAYNGIYCAPRPSDGALAV 354
+ AIFSDP N T NW GP+VC Y G+ CAP D + V
Sbjct: 66139 KKAIFSDPFNTTGNWHGPHVCGYTGVVCAPALDDSDVTV 66023
Score = 35.0 bits (70), Expect(5) = 2e-067
Identities = 11/15 (73%), Positives = 14/15 (93%)
Frame = +3 / -3
Query: 423 DLALLHLNSNRFCGV 467
D+A+ HLNSNRFCG+
Sbjct: 65953 DVAMFHLNSNRFCGI 65909
Score = 29.0 bits (57), Expect(5) = 2e-067
Identities = 11/15 (73%), Positives = 13/15 (86%)
Frame = +3 / -3
Query: 369 NHADIAGHIPADLPL 413
N ADIAGH+PA+L L
Sbjct: 66004 NGADIAGHLPAELGL 65960
>ref|NM_119558.1| Arabidopsis thaliana protein binding AT4G33970 mRNA, complete cds
Length = 2100
Score = 133 bits (286), Expect(5) = 2e-067
Identities = 54/86 (62%), Positives = 63/86 (73%)
Frame = +3 / +1
Query: 516 SNNRFVGAFPAVVLALPSLRYLDLRFNDFEGPIPPPLFDRPLDAILLNSNRLRGPIPANL 695
SNNRFVG FP VVL+ P ++Y DLRFNDFEG +PP LF + LDAI LN NR IP +L
Sbjct: 568 SNNRFVGPFPNVVLSWPDVKYFDLRFNDFEGQVPPELFKKELDAIFLNDNRFTSVIPESL 747
Query: 696 GNSPASVLVLAHNRLGGCIPPSIGRM 773
G SPASV+ A+N+ GCIP SIG M
Sbjct: 748 GESPASVVTFANNKFTGCIPKSIGNM 825
Score = 78.0 bits (164), Expect(5) = 2e-067
Identities = 30/68 (44%), Positives = 46/68 (67%)
Frame = +3 / +1
Query: 783 LNEIVLIDDDLTGCVPPQVGLLTKLTVFDVSGNHLQGPLPPAVGGMAVLQQLNVAGNLLR 962
LNEIV +D+DL GC P ++G L+ +TVFD S N G LP + G+ +++++++GN L
Sbjct: 832 LNEIVFMDNDLGGCFPSEIGKLSNVTVFDASKNSFIGRLPTSFVGLTSVEEIDISGNKLT 1011
Query: 963 GPVPSAVC 986
G VP +C
Sbjct: 1012 GLVPHNIC 1035
Score = 58.3 bits (121), Expect(5) = 2e-067
Identities = 21/39 (53%), Positives = 25/39 (64%)
Frame = +1 / +1
Query: 238 RTAIFSDPSNFTSNWAGPNVCAYNGIYCAPRPSDGALAV 354
+ AIFSDP N T NW GP+VC Y G+ CAP D + V
Sbjct: 289 KKAIFSDPFNTTGNWHGPHVCGYTGVVCAPALDDSDVTV 405
Score = 35.0 bits (70), Expect(5) = 2e-067
Identities = 11/15 (73%), Positives = 14/15 (93%)
Frame = +3 / +1
Query: 423 DLALLHLNSNRFCGV 467
D+A+ HLNSNRFCG+
Sbjct: 475 DVAMFHLNSNRFCGI 519
Score = 29.0 bits (57), Expect(5) = 2e-067
Identities = 11/15 (73%), Positives = 13/15 (86%)
Frame = +3 / +1
Query: 369 NHADIAGHIPADLPL 413
N ADIAGH+PA+L L
Sbjct: 424 NGADIAGHLPAELGL 468
>dbj|AP000735.1| Arabidopsis thaliana genomic DNA, chromosome 3, TAC clone:K13E13
Length = 79186
Score = 160 bits (345), Expect(4) = 3e-067
Identities = 63/117 (53%), Positives = 79/117 (67%)
Frame = +3 / -3
Query: 423 DLALLHLNSNRFCGVXXXXXXXXXXXXXXXXSNNRFVGAFPAVVLALPSLRYLDLRFNDF 602
D+AL H+NSNRFCGV SNNRFVG FP V L+ PSL++LD+R+NDF
Sbjct: 40244 DVALFHVNSNRFCGVIPKSLSKLTLMYEFDVSNNRFVGPFPTVALSWPSLKFLDIRYNDF 40065
Query: 603 EGPIPPPLFDRPLDAILLNSNRLRGPIPANLGNSPASVLVLAHNRLGGCIPPSIGRM 773
EG +PP +FD+ LDAI LN+NR IP +G S ASV+ AHN+ GCIP +IG+M
Sbjct: 40064 EGKLPPEIFDKDLDAIFLNNNRFESTIPETIGKSTASVVTFAHNKFSGCIPKTIGQM 39894
Score = 69.8 bits (146), Expect(4) = 3e-067
Identities = 28/68 (41%), Positives = 43/68 (63%)
Frame = +3 / -3
Query: 783 LNEIVLIDDDLTGCVPPQVGLLTKLTVFDVSGNHLQGPLPPAVGGMAVLQQLNVAGNLLR 962
LNEIV I ++L+GC+P ++G L +TVFD S N G LP + G+A ++Q++ + N
Sbjct: 39887 LNEIVFIGNNLSGCLPNEIGSLNNVTVFDASSNGFVGSLPSTLSGLANVEQMDFSYNKFT 39708
Query: 963 GPVPSAVC 986
G V +C
Sbjct: 39707 GFVTDNIC 39684
Score = 56.5 bits (117), Expect(4) = 3e-067
Identities = 18/39 (46%), Positives = 27/39 (69%)
Frame = +1 / -3
Query: 238 RTAIFSDPSNFTSNWAGPNVCAYNGIYCAPRPSDGALAV 354
+ A +SDP N +NW GP+VC+Y G++CAP D ++ V
Sbjct: 40430 KKAFYSDPFNTAANWVGPDVCSYKGVFCAPALDDPSVLV 40314
Score = 28.6 bits (56), Expect(4) = 3e-067
Identities = 10/15 (66%), Positives = 13/15 (86%)
Frame = +3 / -3
Query: 369 NHADIAGHIPADLPL 413
NHADIAG++P +L L
Sbjct: 40295 NHADIAGYLPPELGL 40251
>ref|NM_112788.2| Arabidopsis thaliana protein binding / structural constituent of
cell wall AT3G19020 mRNA, complete cds
Length = 3147
Score = 160 bits (345), Expect(4) = 3e-067
Identities = 63/117 (53%), Positives = 79/117 (67%)
Frame = +3 / +1
Query: 423 DLALLHLNSNRFCGVXXXXXXXXXXXXXXXXSNNRFVGAFPAVVLALPSLRYLDLRFNDF 602
D+AL H+NSNRFCGV SNNRFVG FP V L+ PSL++LD+R+NDF
Sbjct: 508 DVALFHVNSNRFCGVIPKSLSKLTLMYEFDVSNNRFVGPFPTVALSWPSLKFLDIRYNDF 687
Query: 603 EGPIPPPLFDRPLDAILLNSNRLRGPIPANLGNSPASVLVLAHNRLGGCIPPSIGRM 773
EG +PP +FD+ LDAI LN+NR IP +G S ASV+ AHN+ GCIP +IG+M
Sbjct: 688 EGKLPPEIFDKDLDAIFLNNNRFESTIPETIGKSTASVVTFAHNKFSGCIPKTIGQM 858
Score = 69.8 bits (146), Expect(4) = 3e-067
Identities = 28/68 (41%), Positives = 43/68 (63%)
Frame = +3 / +1
Query: 783 LNEIVLIDDDLTGCVPPQVGLLTKLTVFDVSGNHLQGPLPPAVGGMAVLQQLNVAGNLLR 962
LNEIV I ++L+GC+P ++G L +TVFD S N G LP + G+A ++Q++ + N
Sbjct: 865 LNEIVFIGNNLSGCLPNEIGSLNNVTVFDASSNGFVGSLPSTLSGLANVEQMDFSYNKFT 1044
Query: 963 GPVPSAVC 986
G V +C
Sbjct: 1045 GFVTDNIC 1068
Score = 56.5 bits (117), Expect(4) = 3e-067
Identities = 18/39 (46%), Positives = 27/39 (69%)
Frame = +1 / +1
Query: 238 RTAIFSDPSNFTSNWAGPNVCAYNGIYCAPRPSDGALAV 354
+ A +SDP N +NW GP+VC+Y G++CAP D ++ V
Sbjct: 322 KKAFYSDPFNTAANWVGPDVCSYKGVFCAPALDDPSVLV 438
Score = 28.6 bits (56), Expect(4) = 3e-067
Identities = 10/15 (66%), Positives = 13/15 (86%)
Frame = +3 / +1
Query: 369 NHADIAGHIPADLPL 413
NHADIAG++P +L L
Sbjct: 457 NHADIAGYLPPELGL 501
>gb|AY091043.1| Arabidopsis thaliana unknown protein (At3g19020) mRNA, partial cds
Length = 2193
Score = 160 bits (345), Expect(4) = 3e-067
Identities = 63/117 (53%), Positives = 79/117 (67%)
Frame = +3 / +1
Query: 423 DLALLHLNSNRFCGVXXXXXXXXXXXXXXXXSNNRFVGAFPAVVLALPSLRYLDLRFNDF 602
D+AL H+NSNRFCGV SNNRFVG FP V L+ PSL++LD+R+NDF
Sbjct: 490 DVALFHVNSNRFCGVIPKSLSKLTLMYEFDVSNNRFVGPFPTVALSWPSLKFLDIRYNDF 669
Query: 603 EGPIPPPLFDRPLDAILLNSNRLRGPIPANLGNSPASVLVLAHNRLGGCIPPSIGRM 773
EG +PP +FD+ LDAI LN+NR IP +G S ASV+ AHN+ GCIP +IG+M
Sbjct: 670 EGKLPPEIFDKDLDAIFLNNNRFESTIPETIGKSTASVVTFAHNKFSGCIPKTIGQM 840
Score = 69.8 bits (146), Expect(4) = 3e-067
Identities = 28/68 (41%), Positives = 43/68 (63%)
Frame = +3 / +1
Query: 783 LNEIVLIDDDLTGCVPPQVGLLTKLTVFDVSGNHLQGPLPPAVGGMAVLQQLNVAGNLLR 962
LNEIV I ++L+GC+P ++G L +TVFD S N G LP + G+A ++Q++ + N
Sbjct: 847 LNEIVFIGNNLSGCLPNEIGSLNNVTVFDASSNGFVGSLPSTLSGLANVEQMDFSYNKFT 1026
Query: 963 GPVPSAVC 986
G V +C
Sbjct: 1027 GFVTDNIC 1050
Score = 56.5 bits (117), Expect(4) = 3e-067
Identities = 18/39 (46%), Positives = 27/39 (69%)
Frame = +1 / +1
Query: 238 RTAIFSDPSNFTSNWAGPNVCAYNGIYCAPRPSDGALAV 354
+ A +SDP N +NW GP+VC+Y G++CAP D ++ V
Sbjct: 304 KKAFYSDPFNTAANWVGPDVCSYKGVFCAPALDDPSVLV 420
Score = 28.6 bits (56), Expect(4) = 3e-067
Identities = 10/15 (66%), Positives = 13/15 (86%)
Frame = +3 / +1
Query: 369 NHADIAGHIPADLPL 413
NHADIAG++P +L L
Sbjct: 439 NHADIAGYLPPELGL 483
>gb|BX841161.1|BX841161 BX841161 Arabidopsis thaliana Flowers and buds Col-0 Arabidopsis
thaliana cDNA clone GSLTFB18ZG09 5PRIM, mRNA sequence
Length = 1005
Score = 111 bits (238), Expect(5) = 8e-067
Identities = 43/81 (53%), Positives = 60/81 (74%)
Frame = +3 / +3
Query: 516 SNNRFVGAFPAVVLALPSLRYLDLRFNDFEGPIPPPLFDRPLDAILLNSNRLRGPIPANL 695
SNN+ G FP+V+ +LPSL++LD+RFN+F+G +P LFD LDA+ +N N+ + +P N+
Sbjct: 378 SNNKLSGEFPSVIFSLPSLKFLDIRFNEFQGDVPSQLFDLNLDALFINDNKFQFRLPRNI 557
Query: 696 GNSPASVLVLAHNRLGGCIPP 758
GNSP SVLVLA+N L G P
Sbjct: 558 GNSPVSVLVLANNDLQGSCVP 620
Score = 106 bits (226), Expect(5) = 8e-067
Identities = 40/82 (48%), Positives = 57/82 (69%)
Frame = +3 / +3
Query: 741 GGCIPPSIGRMAATLNEIVLIDDDLTGCVPPQVGLLTKLTVFDVSGNHLQGPLPPAVGGM 920
G C+PPS +M TL+EI++ + LTGC+ ++GLL +LTVFDVS N+L G LP +G M
Sbjct: 606 GSCVPPSFYKMGKTLHEIIITNSQLTGCLNREIGLLNQLTVFDVSNNNLVGSLPETIGDM 785
Query: 921 AVLQQLNVAGNLLRGPVPSAVC 986
L+QLN+A N G +P ++C
Sbjct: 786 KSLEQLNIAHNKFSGYIPDSIC 851
Score = 58.3 bits (121), Expect(5) = 8e-067
Identities = 19/27 (70%), Positives = 22/27 (81%)
Frame = +1 / +3
Query: 247 IFSDPSNFTSNWAGPNVCAYNGIYCAP 327
I SDP+ FTSNW GPNVC Y G++CAP
Sbjct: 108 ITSDPNGFTSNWCGPNVCNYTGVFCAP 188
Score = 29.5 bits (58), Expect(5) = 8e-067
Identities = 11/14 (78%), Positives = 12/14 (85%)
Frame = +3 / +3
Query: 423 DLALLHLNSNRFCG 464
DLAL H+NSNRF G
Sbjct: 285 DLALFHINSNRFQG 326
Score = 26.3 bits (51), Expect(5) = 8e-067
Identities = 9/15 (60%), Positives = 13/15 (86%)
Frame = +3 / +3
Query: 369 NHADIAGHIPADLPL 413
NHA+IAG++P +L L
Sbjct: 234 NHANIAGYLPLELGL 278
>dbj|AB022223.1| Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MWI23
Length = 77273
Score = 111 bits (238), Expect(5) = 2e-066
Identities = 43/81 (53%), Positives = 60/81 (74%)
Frame = +3 / -2
Query: 516 SNNRFVGAFPAVVLALPSLRYLDLRFNDFEGPIPPPLFDRPLDAILLNSNRLRGPIPANL 695
SNN+ G FP+V+ +LPSL++LD+RFN+F+G +P LFD LDA+ +N N+ + +P N+
Sbjct: 53227 SNNKLSGEFPSVIFSLPSLKFLDIRFNEFQGDVPSQLFDLNLDALFINDNKFQFRLPRNI 53048
Query: 696 GNSPASVLVLAHNRLGGCIPP 758
GNSP SVLVLA+N L G P
Sbjct: 53047 GNSPVSVLVLANNDLQGSCVP 52985
Score = 105 bits (223), Expect(5) = 2e-066
Identities = 40/82 (48%), Positives = 57/82 (69%)
Frame = +3 / -2
Query: 741 GGCIPPSIGRMAATLNEIVLIDDDLTGCVPPQVGLLTKLTVFDVSGNHLQGPLPPAVGGM 920
G C+PPS +M TL+EI++ + LTGC+ ++GLL +LTVFDVS N+L G LP +G M
Sbjct: 52999 GSCVPPSFYKMGKTLHEIIITNSQLTGCLNREIGLLNQLTVFDVSYNNLVGSLPETIGDM 52820
Query: 921 AVLQQLNVAGNLLRGPVPSAVC 986
L+QLN+A N G +P ++C
Sbjct: 52819 KSLEQLNIAHNKFSGYIPESIC 52754
Score = 58.3 bits (121), Expect(5) = 2e-066
Identities = 19/27 (70%), Positives = 22/27 (81%)
Frame = +1 / -2
Query: 247 IFSDPSNFTSNWAGPNVCAYNGIYCAP 327
I SDP+ FTSNW GPNVC Y G++CAP
Sbjct: 53497 ITSDPNGFTSNWCGPNVCNYTGVFCAP 53417
Score = 29.5 bits (58), Expect(5) = 2e-066
Identities = 11/14 (78%), Positives = 12/14 (85%)
Frame = +3 / -2
Query: 423 DLALLHLNSNRFCG 464
DLAL H+NSNRF G
Sbjct: 53320 DLALFHINSNRFQG 53279
Score = 26.3 bits (51), Expect(5) = 2e-066
Identities = 9/15 (60%), Positives = 13/15 (86%)
Frame = +3 / -2
Query: 369 NHADIAGHIPADLPL 413
NHA+IAG++P +L L
Sbjct: 53371 NHANIAGYLPLELGL 53327
>ref|NM_113179.3| Arabidopsis thaliana protein binding / structural constituent of
cell wall AT3G22800 mRNA, complete cds
Length = 1669
Score = 111 bits (238), Expect(5) = 2e-066
Identities = 43/81 (53%), Positives = 60/81 (74%)
Frame = +3 / +1
Query: 516 SNNRFVGAFPAVVLALPSLRYLDLRFNDFEGPIPPPLFDRPLDAILLNSNRLRGPIPANL 695
SNN+ G FP+V+ +LPSL++LD+RFN+F+G +P LFD LDA+ +N N+ + +P N+
Sbjct: 544 SNNKLSGEFPSVIFSLPSLKFLDIRFNEFQGDVPSQLFDLNLDALFINDNKFQFRLPRNI 723
Query: 696 GNSPASVLVLAHNRLGGCIPP 758
GNSP SVLVLA+N L G P
Sbjct: 724 GNSPVSVLVLANNDLQGSCVP 786
Score = 105 bits (223), Expect(5) = 2e-066
Identities = 40/82 (48%), Positives = 57/82 (69%)
Frame = +3 / +1
Query: 741 GGCIPPSIGRMAATLNEIVLIDDDLTGCVPPQVGLLTKLTVFDVSGNHLQGPLPPAVGGM 920
G C+PPS +M TL+EI++ + LTGC+ ++GLL +LTVFDVS N+L G LP +G M
Sbjct: 772 GSCVPPSFYKMGKTLHEIIITNSQLTGCLNREIGLLNQLTVFDVSYNNLVGSLPETIGDM 951
Query: 921 AVLQQLNVAGNLLRGPVPSAVC 986
L+QLN+A N G +P ++C
Sbjct: 952 KSLEQLNIAHNKFSGYIPESIC 1017
Score = 58.3 bits (121), Expect(5) = 2e-066
Identities = 19/27 (70%), Positives = 22/27 (81%)
Frame = +1 / +1
Query: 247 IFSDPSNFTSNWAGPNVCAYNGIYCAP 327
I SDP+ FTSNW GPNVC Y G++CAP
Sbjct: 274 ITSDPNGFTSNWCGPNVCNYTGVFCAP 354
Score = 29.5 bits (58), Expect(5) = 2e-066
Identities = 11/14 (78%), Positives = 12/14 (85%)
Frame = +3 / +1
Query: 423 DLALLHLNSNRFCG 464
DLAL H+NSNRF G
Sbjct: 451 DLALFHINSNRFQG 492
Score = 26.3 bits (51), Expect(5) = 2e-066
Identities = 9/15 (60%), Positives = 13/15 (86%)
Frame = +3 / +1
Query: 369 NHADIAGHIPADLPL 413
NHA+IAG++P +L L
Sbjct: 400 NHANIAGYLPLELGL 444
>ref|NC_003070.5| Arabidopsis thaliana chromosome 1, complete sequence
Length = 30432563
Score = 249 bits (538), Expect = 1e-064
Identities = 100/157 (63%), Positives = 123/157 (78%)
Frame = +3 / +1
Query: 516 SNNRFVGAFPAVVLALPSLRYLDLRFNDFEGPIPPPLFDRPLDAILLNSNRLRGPIPANL 695
SNNRFVG FP VVL+LPSL++LDLR+N+FEG IP LFDR LDAI LN NR R IP N+
Sbjct: 4070620 SNNRFVGKFPKVVLSLPSLKFLDLRYNEFEGKIPSKLFDRELDAIFLNHNRFRFGIPKNM 4070799
Query: 696 GNSPASVLVLAHNRLGGCIPPSIGRMAATLNEIVLIDDDLTGCVPPQVGLLTKLTVFDVS 875
GNSP S LVLA N LGGCIP SIG+M TLNE++L +D+LTGC+PPQ+G L K+TVFD++
Sbjct: 4070800 GNSPVSALVLADNNLGGCIPGSIGQMGKTLNELILSNDNLTGCLPPQIGNLKKVTVFDIT 4070979
Query: 876 GNHLQGPLPPAVGGMAVLQQLNVAGNLLRGPVPSAVC 986
N LQGPLP +VG M L++L+VA N G +P ++C
Sbjct: 4070980 SNRLQGPLPSSVGNMKSLEELHVANNAFTGVIPPSIC 4071090
Score = 243 bits (526), Expect = 6e-063
Identities = 100/157 (63%), Positives = 120/157 (76%)
Frame = +3 / +2
Query: 516 SNNRFVGAFPAVVLALPSLRYLDLRFNDFEGPIPPPLFDRPLDAILLNSNRLRGPIPANL 695
SNNRFVG FP VVL+LPSL++LDLR+N+FEG IP LFD+ LDAI LN NR IP N+
Sbjct: 23117066 SNNRFVGKFPNVVLSLPSLKFLDLRYNEFEGSIPSKLFDKELDAIFLNHNRFMFGIPENM 23117245
Query: 696 GNSPASVLVLAHNRLGGCIPPSIGRMAATLNEIVLIDDDLTGCVPPQVGLLTKLTVFDVS 875
GNSP S LVLA N LGGCIP SIG M TLNEI+L +D+LTGC+PPQ+G L +TVFD+S
Sbjct: 23117246 GNSPVSALVLADNDLGGCIPGSIGLMGKTLNEIILSNDNLTGCLPPQIGNLKNVTVFDIS 23117425
Query: 876 GNHLQGPLPPAVGGMAVLQQLNVAGNLLRGPVPSAVC 986
N L GPLP ++G M L+QLNVA N G +PS++C
Sbjct: 23117426 FNRLSGPLPSSIGNMKSLEQLNVANNRFTGVIPSSIC 23117536
Score = 154 bits (330), Expect = 6e-036
Identities = 62/117 (52%), Positives = 77/117 (65%)
Frame = +3 / -1
Query: 423 DLALLHLNSNRFCGVXXXXXXXXXXXXXXXXSNNRFVGAFPAVVLALPSLRYLDLRFNDF 602
DLAL H+NSNRFCG+ SNNRFVG FP V L+ PSL++LDLR+N+F
Sbjct: 18323381 DLALFHINSNRFCGIIPKSLSKLALMYEFDVSNNRFVGQFPEVSLSWPSLKFLDLRYNEF 18323202
Query: 603 EGPIPPPLFDRPLDAILLNSNRLRGPIPANLGNSPASVLVLAHNRLGGCIPPSIGRM 773
EG +P +FD+ LDAI LN+NR IP +G S ASV+ A+N+ GCIP SIG M
Sbjct: 18323201 EGSLPSEIFDKDLDAIFLNNNRFESVIPGTIGKSKASVVTFANNKFSGCIPKSIGNM 18323031
>dbj|BA000015.5| Arabidopsis thaliana DNA, chromosome 5, complete sequence
Length = 23810767
Score = 248 bits (536), Expect = 2e-064
Identities = 102/188 (54%), Positives = 126/188 (67%)
Frame = +3 / +2
Query: 423 DLALLHLNSNRFCGVXXXXXXXXXXXXXXXXSNNRFVGAFPAVVLALPSLRYLDLRFNDF 602
D+AL H+NSNRFCG SNNRF G FP VV+ LP L+YLDLR+N+F
Sbjct: 8384921 DIALFHVNSNRFCGTLPVGFSQLSLLFELDLSNNRFAGKFPEVVIGLPKLKYLDLRYNEF 8385100
Query: 603 EGPIPPPLFDRPLDAILLNSNRLRGPIPANLGNSPASVLVLAHNRLGGCIPPSIGRMAAT 782
EG +P LFD+ LDA+ LNSNR R IP N+GNSP SVLVLA NR GCIPPS G+M T
Sbjct: 8385101 EGELPESLFDKDLDALFLNSNRFRSKIPVNMGNSPVSVLVLASNRFEGCIPPSFGKMGKT 8385280
Query: 783 LNEIVLIDDDLTGCVPPQVGLLTKLTVFDVSGNHLQGPLPPAVGGMAVLQQLNVAGNLLR 962
LNEI+L+D+ L C+P +GLL +TV D+S N L G LP ++G M L+ LNV N+L
Sbjct: 8385281 LNEIILMDNGLQSCIPNDMGLLQNVTVLDISYNWLVGELPKSMGQMENLEVLNVERNMLS 8385460
Query: 963 GPVPSAVC 986
G +P +C
Sbjct: 8385461 GLIPDELC 8385484
>ref|NC_003076.4| Arabidopsis thaliana chromosome 5, complete sequence
Length = 26992728
Score = 248 bits (536), Expect = 2e-064
Identities = 102/188 (54%), Positives = 126/188 (67%)
Frame = +3 / +1
Query: 423 DLALLHLNSNRFCGVXXXXXXXXXXXXXXXXSNNRFVGAFPAVVLALPSLRYLDLRFNDF 602
D+AL H+NSNRFCG SNNRF G FP VV+ LP L+YLDLR+N+F
Sbjct: 8894551 DIALFHVNSNRFCGTLPVGFSQLSLLFELDLSNNRFAGKFPEVVIGLPKLKYLDLRYNEF 8894730
Query: 603 EGPIPPPLFDRPLDAILLNSNRLRGPIPANLGNSPASVLVLAHNRLGGCIPPSIGRMAAT 782
EG +P LFD+ LDA+ LNSNR R IP N+GNSP SVLVLA NR GCIPPS G+M T
Sbjct: 8894731 EGELPESLFDKDLDALFLNSNRFRSKIPVNMGNSPVSVLVLASNRFEGCIPPSFGKMGKT 8894910
Query: 783 LNEIVLIDDDLTGCVPPQVGLLTKLTVFDVSGNHLQGPLPPAVGGMAVLQQLNVAGNLLR 962
LNEI+L+D+ L C+P +GLL +TV D+S N L G LP ++G M L+ LNV N+L
Sbjct: 8894911 LNEIILMDNGLQSCIPNDMGLLQNVTVLDISYNWLVGELPKSMGQMENLEVLNVERNMLS 8895090
Query: 963 GPVPSAVC 986
G +P +C
Sbjct: 8895091 GLIPDELC 8895114
>ref|NC_003075.3| Arabidopsis thaliana chromosome 4, complete sequence
Length = 18585042
Score = 247 bits (534), Expect = 4e-064
Identities = 102/188 (54%), Positives = 130/188 (69%)
Frame = +3 / -3
Query: 423 DLALLHLNSNRFCGVXXXXXXXXXXXXXXXXSNNRFVGAFPAVVLALPSLRYLDLRFNDF 602
DLAL+HLNSNRFCG+ SNNRFVG FP VVLALPSL+YLDLR+N+F
Sbjct: 14040595 DLALIHLNSNRFCGILPRSFANLSLLYELDLSNNRFVGPFPDVVLALPSLKYLDLRYNEF 14040416
Query: 603 EGPIPPPLFDRPLDAILLNSNRLRGPIPANLGNSPASVLVLAHNRLGGCIPPSIGRMAAT 782
EGP+PP LF PLDAI +N+NRL IP + + ASV+V A+N GC+PP+I R A T
Sbjct: 14040415 EGPLPPKLFSNPLDAIFVNNNRLTSLIPRDFTGTTASVVVFANNDFSGCLPPTIARFADT 14040236
Query: 783 LNEIVLIDDDLTGCVPPQVGLLTKLTVFDVSGNHLQGPLPPAVGGMAVLQQLNVAGNLLR 962
L E++LI+ L+GC+PP+VG L KL V D+S N L GP+P ++ G+ L+QLN+ N+
Sbjct: 14040235 LEELLLINSSLSGCLPPEVGYLYKLRVLDMSYNSLVGPVPYSLAGLGHLEQLNLEHNMFT 14040056
Query: 963 GPVPSAVC 986
G VP VC
Sbjct: 14040055 GTVPLGVC 14040032
Score = 204 bits (441), Expect = 3e-051
Identities = 89/188 (47%), Positives = 118/188 (62%)
Frame = +3 / +1
Query: 423 DLALLHLNSNRFCGVXXXXXXXXXXXXXXXXSNNRFVGAFPAVVLALPSLRYLDLRFNDF 602
DL +LHLNSNRF G SNN+ G FP V L +P+L YLDLRFN
Sbjct: 14419246 DLNILHLNSNRFSGQIPDSFKSLASLQELDLSNNKLSGPFPLVTLYIPNLVYLDLRFNSL 14419425
Query: 603 EGPIPPPLFDRPLDAILLNSNRLRGPIPANLGNSPASVLVLAHNRLGGCIPPSIGRMAAT 782
G IP LF++ LDAILLN+N+ G IP NLGNSPASV+ LA+NR G IP S G +
Sbjct: 14419426 TGFIPEELFNKRLDAILLNNNQFVGEIPRNLGNSPASVINLANNRFSGEIPTSFGLTGSR 14419605
Query: 783 LNEIVLIDDDLTGCVPPQVGLLTKLTVFDVSGNHLQGPLPPAVGGMAVLQQLNVAGNLLR 962
+ E++L+++ LTGC+P VG+ +++ VFDVS N L G +P + ++ ++ LN+A N
Sbjct: 14419606 VKEVLLLNNQLTGCIPESVGMFSEIEVFDVSYNALMGHVPDTISCLSAIEILNLAHNKFS 14419785
Query: 963 GPVPSAVC 986
G VP VC
Sbjct: 14419786 GEVPDLVC 14419809
Score = 136 bits (291), Expect = 1e-030
Identities = 54/86 (62%), Positives = 66/86 (76%)
Frame = +3 / -3
Query: 516 SNNRFVGAFPAVVLALPSLRYLDLRFNDFEGPIPPPLFDRPLDAILLNSNRLRGPIPANL 695
SNNRF G FP VVL LPSL++LDLRFN+FEGP+P LF + LDAI +N NR R +P NL
Sbjct: 10277959 SNNRFAGIFPTVVLQLPSLKFLDLRFNEFEGPVPRELFSKDLDAIFINHNRFRFELPDNL 10277780
Query: 696 GNSPASVLVLAHNRLGGCIPPSIGRM 773
G+SP SV+V+A+N GCIP S+G M
Sbjct: 10277779 GDSPVSVIVVANNHFHGCIPTSLGDM 10277702
Score = 133 bits (286), Expect = 7e-030
Identities = 54/86 (62%), Positives = 63/86 (73%)
Frame = +3 / -2
Query: 516 SNNRFVGAFPAVVLALPSLRYLDLRFNDFEGPIPPPLFDRPLDAILLNSNRLRGPIPANL 695
SNNRFVG FP VVL+ P ++Y DLRFNDFEG +PP LF + LDAI LN NR IP +L
Sbjct: 16281332 SNNRFVGPFPNVVLSWPDVKYFDLRFNDFEGQVPPELFKKELDAIFLNDNRFTSVIPESL 16281153
Query: 696 GNSPASVLVLAHNRLGGCIPPSIGRM 773
G SPASV+ A+N+ GCIP SIG M
Sbjct: 16281152 GESPASVVTFANNKFTGCIPKSIGNM 16281075
Score = 131 bits (281), Expect = 3e-029
Identities = 52/86 (60%), Positives = 64/86 (74%)
Frame = +3 / +3
Query: 516 SNNRFVGAFPAVVLALPSLRYLDLRFNDFEGPIPPPLFDRPLDAILLNSNRLRGPIPANL 695
SNNRF G FP VVL LPSL++LDLRFN+FEG +P LF + LDAI +N NR R +P N
Sbjct: 7759113 SNNRFAGKFPTVVLQLPSLKFLDLRFNEFEGTVPKELFSKDLDAIFINHNRFRFELPENF 7759292
Query: 696 GNSPASVLVLAHNRLGGCIPPSIGRM 773
G+SP SV+VLA+NR GC+P S+ M
Sbjct: 7759293 GDSPVSVIVLANNRFHGCVPSSLVEM 7759370
Score = 107 bits (228), Expect = 7e-022
Identities = 44/97 (45%), Positives = 64/97 (65%)
Frame = +3 / -3
Query: 696 GNSPASVLVLAHNRLGGCIPPSIGRMAATLNEIVLIDDDLTGCVPPQVGLLTKLTVFDVS 875
G + L LA+N+ G +P SI R +TL E++ +++D TGC+P ++G LT +V D+
Sbjct: 4071448 GTTHILFLTLANNKFNGPLPRSILRSMSTLTEVLFLNNDFTGCIPHEIGFLTGASVIDIG 4071269
Query: 876 GNHLQGPLPPAVGGMAVLQQLNVAGNLLRGPVPSAVC 986
GN L GPLP ++ + ++QLN AGNLL G VP AVC
Sbjct: 4071268 GNKLTGPLPLSLMCLEKVEQLNFAGNLLFGAVPEAVC 4071158
>gb|CW798893.1|CW798893 WiscDsLox317F03 Arabidopsis thaliana T-DNA insertion flanking
sequences Arabidopsis thaliana genomic, DNA sequence
Length = 822
Score = 157 bits (338), Expect(4) = 3e-059
Identities = 62/117 (52%), Positives = 80/117 (68%)
Frame = +3 / +2
Query: 423 DLALLHLNSNRFCGVXXXXXXXXXXXXXXXXSNNRFVGAFPAVVLALPSLRYLDLRFNDF 602
D+A+ HLNSNRFCG+ SNNRFVG FP+VVL+ P+++++D+R+NDF
Sbjct: 290 DVAMFHLNSNRFCGIIPKSFEKLSLMHEFDVSNNRFVGPFPSVVLSWPAVKFIDVRYNDF 469
Query: 603 EGPIPPPLFDRPLDAILLNSNRLRGPIPANLGNSPASVLVLAHNRLGGCIPPSIGRM 773
EG +PP LF + LDAI LN+NR IP +LG S ASV+ AHN+ GCIP SIG M
Sbjct: 470 EGQVPPELFKKDLDAIFLNNNRFTSTIPDSLGESSASVVTFAHNKFSGCIPRSIGNM 640
Score = 59.3 bits (123), Expect(4) = 3e-059
Identities = 23/57 (40%), Positives = 34/57 (59%)
Frame = +3 / +3
Query: 783 LNEIVLIDDDLTGCVPPQVGLLTKLTVFDVSGNHLQGPLPPAVGGMAVLQQLNVAGN 953
LNEI+ D+ L GC P +G L + VFD S N G LPP+ G+ ++ +++GN
Sbjct: 648 LNEIIFKDNSLGGCFPSXIGKLAXVNVFDXSMNSFXGVLPPSFVGLTSMEXFDISGN 818
Score = 42.8 bits (87), Expect(4) = 3e-059
Identities = 16/36 (44%), Positives = 20/36 (55%)
Frame = +1 / +2
Query: 247 IFSDPSNFTSNWAGPNVCAYNGIYCAPRPSDGALAV 354
+ S+ N + NW GP VC Y G CAP D +AV
Sbjct: 113 VXSNXXNTSGNWHGPXVCGYXGXVCAPALDDPDVAV 220
Score = 29.0 bits (57), Expect(4) = 3e-059
Identities = 11/15 (73%), Positives = 13/15 (86%)
Frame = +3 / +2
Query: 369 NHADIAGHIPADLPL 413
N ADIAGH+PA+L L
Sbjct: 239 NGADIAGHLPAELGL 283
>emb|BX824256.1|CNS0A7QT Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTPGH34ZA06 of Hormone Treated Callus of strain col-0
of Arabidopsis thaliana (thale cress)
Length = 1579
Score = 103 bits (220), Expect(5) = 4e-058
Identities = 40/81 (49%), Positives = 58/81 (71%)
Frame = +3 / +2
Query: 516 SNNRFVGAFPAVVLALPSLRYLDLRFNDFEGPIPPPLFDRPLDAILLNSNRLRGPIPANL 695
S+N+ G FP+V+ +LPSL++ D+RFN+F+G +P LFD LDA+ +N N+ + +P +
Sbjct: 506 SDNKVCGEFPSVIFSLPSLKFRDIRFNEFQGDVPSQLFDLNLDALFINDNKFQCRLPRKI 685
Query: 696 GNSPASVLVLAHNRLGGCIPP 758
GNSP SVLVLA+N L G P
Sbjct: 686 GNSPVSVLVLANNDLQGSCLP 748
Score = 90.4 bits (191), Expect(5) = 4e-058
Identities = 35/82 (42%), Positives = 53/82 (64%)
Frame = +3 / +2
Query: 741 GGCIPPSIGRMAATLNEIVLIDDDLTGCVPPQVGLLTKLTVFDVSGNHLQGPLPPAVGGM 920
G C+PPS +M TL+EI++ + LTGC+ ++GL +LTVFDVS N+L G LP +G +
Sbjct: 734 GSCLPPSFYKMGKTLHEIIMTNSQLTGCLNREIGLRNQLTVFDVSHNNLVGSLPETIGDI 913
Query: 921 AVLQQLNVAGNLLRGPVPSAVC 986
L+Q N+A +P ++C
Sbjct: 914 KSLEQ*NIAHKKFSRYIPQSIC 979
Score = 56.1 bits (116), Expect(5) = 4e-058
Identities = 19/27 (70%), Positives = 21/27 (77%)
Frame = +1 / +2
Query: 247 IFSDPSNFTSNWAGPNVCAYNGIYCAP 327
I SDP+ FTSNW GPNVC Y G+ CAP
Sbjct: 236 ITSDPNGFTSNWCGPNVCDYTGVCCAP 316
Score = 29.5 bits (58), Expect(5) = 4e-058
Identities = 11/14 (78%), Positives = 12/14 (85%)
Frame = +3 / +2
Query: 423 DLALLHLNSNRFCG 464
DLAL H+NSNRF G
Sbjct: 413 DLALFHMNSNRFRG 454
Score = 23.1 bits (44), Expect(5) = 4e-058
Identities = 8/15 (53%), Positives = 12/15 (80%)
Frame = +3 / +2
Query: 369 NHADIAGHIPADLPL 413
NHA++AG+ P +L L
Sbjct: 362 NHANVAGYGPLELGL 406
>emb|AL161574.2|ATCHRIV70 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 70
Length = 198429
Score = 204 bits (441), Expect(2) = 8e-058
Identities = 89/188 (47%), Positives = 118/188 (62%)
Frame = +3 / +2
Query: 423 DLALLHLNSNRFCGVXXXXXXXXXXXXXXXXSNNRFVGAFPAVVLALPSLRYLDLRFNDF 602
DL +LHLNSNRF G SNN+ G FP V L +P+L YLDLRFN
Sbjct: 147320 DLNILHLNSNRFSGQIPDSFKSLASLQELDLSNNKLSGPFPLVTLYIPNLVYLDLRFNSL 147499
Query: 603 EGPIPPPLFDRPLDAILLNSNRLRGPIPANLGNSPASVLVLAHNRLGGCIPPSIGRMAAT 782
G IP LF++ LDAILLN+N+ G IP NLGNSPASV+ LA+NR G IP S G +
Sbjct: 147500 TGFIPEELFNKRLDAILLNNNQFVGEIPRNLGNSPASVINLANNRFSGEIPTSFGLTGSR 147679
Query: 783 LNEIVLIDDDLTGCVPPQVGLLTKLTVFDVSGNHLQGPLPPAVGGMAVLQQLNVAGNLLR 962
+ E++L+++ LTGC+P VG+ +++ VFDVS N L G +P + ++ ++ LN+A N
Sbjct: 147680 VKEVLLLNNQLTGCIPESVGMFSEIEVFDVSYNALMGHVPDTISCLSAIEILNLAHNKFS 147859
Query: 963 GPVPSAVC 986
G VP VC
Sbjct: 147860 GEVPDLVC 147883
Score = 42.3 bits (86), Expect(2) = 8e-058
Identities = 12/29 (41%), Positives = 20/29 (68%)
Frame = +1 / +2
Query: 238 RTAIFSDPSNFTSNWAGPNVCAYNGIYCA 324
++A+ DPSN W G +VC+Y G++C+
Sbjct: 147155 KSAMREDPSNVLKTWVGSDVCSYKGVFCS 147241
>emb|AL096692.1|F17A13 Arabidopsis thaliana clone F17A13, *** SEQUENCING IN PROGRESS ***
Length = 100310
Score = 204 bits (441), Expect(2) = 8e-058
Identities = 89/188 (47%), Positives = 118/188 (62%)
Frame = +3 / +1
Query: 423 DLALLHLNSNRFCGVXXXXXXXXXXXXXXXXSNNRFVGAFPAVVLALPSLRYLDLRFNDF 602
DL +LHLNSNRF G SNN+ G FP V L +P+L YLDLRFN
Sbjct: 29281 DLNILHLNSNRFSGQIPDSFKSLASLQELDLSNNKLSGPFPLVTLYIPNLVYLDLRFNSL 29460
Query: 603 EGPIPPPLFDRPLDAILLNSNRLRGPIPANLGNSPASVLVLAHNRLGGCIPPSIGRMAAT 782
G IP LF++ LDAILLN+N+ G IP NLGNSPASV+ LA+NR G IP S G +
Sbjct: 29461 TGFIPEELFNKRLDAILLNNNQFVGEIPRNLGNSPASVINLANNRFSGEIPTSFGLTGSR 29640
Query: 783 LNEIVLIDDDLTGCVPPQVGLLTKLTVFDVSGNHLQGPLPPAVGGMAVLQQLNVAGNLLR 962
+ E++L+++ LTGC+P VG+ +++ VFDVS N L G +P + ++ ++ LN+A N
Sbjct: 29641 VKEVLLLNNQLTGCIPESVGMFSEIEVFDVSYNALMGHVPDTISCLSAIEILNLAHNKFS 29820
Query: 963 GPVPSAVC 986
G VP VC
Sbjct: 29821 GEVPDLVC 29844
Score = 42.3 bits (86), Expect(2) = 8e-058
Identities = 12/29 (41%), Positives = 20/29 (68%)
Frame = +1 / +1
Query: 238 RTAIFSDPSNFTSNWAGPNVCAYNGIYCA 324
++A+ DPSN W G +VC+Y G++C+
Sbjct: 29116 KSAMREDPSNVLKTWVGSDVCSYKGVFCS 29202
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 939,100,839
Number of Sequences: 1013581
Number of extensions: 9839949
Number of successful extensions: 83835
Number of sequences better than 1.0e-020: 100
length of database: 302,980,290
effective HSP length: 57
effective length of database: 245,206,173
effective search space used: 74787882765
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)