TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 1716368.2.1
(1356 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BT004056.1| Arabidopsis thaliana clone RAFL15-26-E06 (R2... 215 3e-067
ref|NM_130074.2| Arabidopsis thaliana ATEXPB4 (ARABIDOPSIS ... 215 3e-067
emb|BX821210.1|CNS0A89M Arabidopsis thaliana Full-length cD... 215 3e-067
ref|NM_105241.3| Arabidopsis thaliana ATEXPB2 (ARABIDOPSIS ... 114 1e-058
gb|AY084478.1| Arabidopsis thaliana clone 109135 mRNA, comp... 122 3e-051
ref|NM_127640.1| Arabidopsis thaliana ATEXPB1 (ARABIDOPSIS ... 122 3e-051
gb|BT003932.1| Arabidopsis thaliana clone RAFL15-12-F16 (R2... 122 3e-051
gb|U95967.1|ATU95967 Arabidopsis thaliana beta-expansin mRN... 122 3e-051
gb|BT005024.1| Arabidopsis thaliana clone U20717 putative b... 122 3e-051
emb|AX589887.1| Sequence 69 from Patent WO02081695 122 3e-051
emb|AX652050.1| Sequence 948 from Patent WO03000898 122 3e-051
emb|CQ805662.1| Sequence 2073 from Patent WO2004035798 122 3e-051
gb|AC007234.3|AC007234 Genomic sequence for Arabidopsis tha... 100 4e-050
ref|NM_118965.2| Arabidopsis thaliana ATEXPB3 (ARABIDOPSIS ... 114 1e-048
gb|AY087228.1| Arabidopsis thaliana clone 33023 mRNA, compl... 114 1e-048
gb|AY039986.1| Arabidopsis thaliana putative beta-expansin/... 114 1e-048
gb|AY133801.1| Arabidopsis thaliana clone U10238 putative b... 114 1e-048
gb|CF652567.1|CF652567 63-L020523-066-003-M15-SP6P MPIZ-ADI... 114 1e-048
gb|AC007659.2|AC007659 Arabidopsis thaliana chromosome II s... 94 1e-047
gb|AY619565.1| Arabidopsis thaliana beta-expansin 6 (EXPB6)... 96 1e-047
gb|AE005173.1| Arabidopsis thaliana chromosome 1, bottom ar... 100 9e-042
gb|AC001229.1|F5I14 Sequence of BAC F5I14 from Arabidopsis ... 100 1e-040
emb|BX827016.1|CNS0A45X Arabidopsis thaliana Full-length cD... 114 3e-034
gb|AU236632.1|AU236632 AU236632 RAFL15 Arabidopsis thaliana... 103 7e-034
gb|AC006234.4| Arabidopsis thaliana chromosome 2 clone F5H1... 93 9e-033
gb|AU236831.1|AU236831 AU236831 RAFL15 Arabidopsis thaliana... 121 2e-031
emb|AL049803.1|F26K10 Arabidopsis thaliana clone F26K10, **... 87 8e-030
emb|AL161572.2|ATCHRIV68 Arabidopsis thaliana DNA chromosom... 87 4e-028
ref|NM_115921.1| Arabidopsis thaliana ATEXPB5 (ARABIDOPSIS ... 73 5e-028
emb|AL138646.2|ATT8B10 Arabidopsis thaliana DNA chromosome ... 63 2e-026
gb|B11878.1|B11878 F5I14-T7.2 IGF Arabidopsis thaliana geno... 92 2e-025
emb|AJ270060.1| Arabidopsis thaliana DNA chromosome 4, long... 87 1e-022
>gb|BT004056.1| Arabidopsis thaliana clone RAFL15-26-E06 (R20474) putative
beta-expansin (At2g45110) mRNA, complete cds
Length = 977
Score = 215 bits (464), Expect(3) = 3e-067
Identities = 80/153 (52%), Positives = 107/153 (69%)
Frame = -1 / +3
Query: 978 GDGSDGGACGYQTAVGKKPFDSMIAAGSTPLYRGGEGCGACYEVKCTTNAACSGQPVTIV 799
G GS GGACGY +AV P +M++AG L+ G+GCG CY+V C + ACSG P+T+
Sbjct: 210 GAGSTGGACGYGSAVANPPLYAMVSAGGPSLFNNGKGCGTCYQVVCIGHPACSGSPITVT 389
Query: 798 ITDQSPGGLFPGEVEHFDMSGTAMGAMARPGMADKLRAGGVLRILYRRVPCKYTGVNIAF 619
ITD+ PGG E H D+SG AMGA+A+PG AD+LR+ GV+R+ Y+R C Y G NI F
Sbjct: 390 ITDECPGGPCASEPVHIDLSGKAMGALAKPGQADQLRSAGVIRVNYKRAACLYRGTNIVF 569
Query: 618 KVDQGANPYYFDVLIEFEDDDGDLSAVDLMEAG 520
++D GANPYY ++E+E+ DGDLS V++ AG
Sbjct: 570 RMDAGANPYYISFVVEYENGDGDLSNVEIQPAG 668
Score = 46.4 bits (95), Expect(3) = 3e-067
Identities = 16/30 (53%), Positives = 24/30 (80%)
Frame = -1 / +3
Query: 426 TSDSRRVLVANNAIPAAWKPGKTYRSLVNY 337
+ +S +V+VA N IPA WKP ++YRS+VN+
Sbjct: 762 SGESHKVIVAYNVIPANWKPDESYRSIVNF 851
Score = 35.9 bits (72), Expect(3) = 3e-067
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = -1 / +3
Query: 531 MEAGSGVWTPMAHNWGATWRLNNGRKLKAPFGLRLTS 421
++ G + M A W++N+G L+ PF +RLTS
Sbjct: 654 IQPAGGSFISMQEMRSAVWKVNSGSALRGPFNIRLTS 764
>ref|NM_130074.2| Arabidopsis thaliana ATEXPB4 (ARABIDOPSIS THALIANA EXPANSIN B4)
AT2G45110 (ATEXPB4) mRNA, complete cds
Length = 956
Score = 215 bits (464), Expect(3) = 3e-067
Identities = 80/153 (52%), Positives = 107/153 (69%)
Frame = -1 / +3
Query: 978 GDGSDGGACGYQTAVGKKPFDSMIAAGSTPLYRGGEGCGACYEVKCTTNAACSGQPVTIV 799
G GS GGACGY +AV P +M++AG L+ G+GCG CY+V C + ACSG P+T+
Sbjct: 210 GAGSTGGACGYGSAVANPPLYAMVSAGGPSLFNNGKGCGTCYQVVCIGHPACSGSPITVT 389
Query: 798 ITDQSPGGLFPGEVEHFDMSGTAMGAMARPGMADKLRAGGVLRILYRRVPCKYTGVNIAF 619
ITD+ PGG E H D+SG AMGA+A+PG AD+LR+ GV+R+ Y+R C Y G NI F
Sbjct: 390 ITDECPGGPCASEPVHIDLSGKAMGALAKPGQADQLRSAGVIRVNYKRAACLYRGTNIVF 569
Query: 618 KVDQGANPYYFDVLIEFEDDDGDLSAVDLMEAG 520
++D GANPYY ++E+E+ DGDLS V++ AG
Sbjct: 570 RMDAGANPYYISFVVEYENGDGDLSNVEIQPAG 668
Score = 46.4 bits (95), Expect(3) = 3e-067
Identities = 16/30 (53%), Positives = 24/30 (80%)
Frame = -1 / +3
Query: 426 TSDSRRVLVANNAIPAAWKPGKTYRSLVNY 337
+ +S +V+VA N IPA WKP ++YRS+VN+
Sbjct: 762 SGESHKVIVAYNVIPANWKPDESYRSIVNF 851
Score = 35.9 bits (72), Expect(3) = 3e-067
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = -1 / +3
Query: 531 MEAGSGVWTPMAHNWGATWRLNNGRKLKAPFGLRLTS 421
++ G + M A W++N+G L+ PF +RLTS
Sbjct: 654 IQPAGGSFISMQEMRSAVWKVNSGSALRGPFNIRLTS 764
>emb|BX821210.1|CNS0A89M Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTSIL25ZE08 of Silique of strain col-0 of Arabidopsis
thaliana (thale cress)
Length = 923
Score = 215 bits (464), Expect(3) = 3e-067
Identities = 80/153 (52%), Positives = 107/153 (69%)
Frame = -1 / +2
Query: 978 GDGSDGGACGYQTAVGKKPFDSMIAAGSTPLYRGGEGCGACYEVKCTTNAACSGQPVTIV 799
G GS GGACGY +AV P +M++AG L+ G+GCG CY+V C + ACSG P+T+
Sbjct: 179 GAGSTGGACGYGSAVANPPLYAMVSAGGPSLFNNGKGCGTCYQVVCIGHPACSGSPITVT 358
Query: 798 ITDQSPGGLFPGEVEHFDMSGTAMGAMARPGMADKLRAGGVLRILYRRVPCKYTGVNIAF 619
ITD+ PGG E H D+SG AMGA+A+PG AD+LR+ GV+R+ Y+R C Y G NI F
Sbjct: 359 ITDECPGGPCASEPVHIDLSGKAMGALAKPGQADQLRSAGVIRVNYKRAACLYRGTNIVF 538
Query: 618 KVDQGANPYYFDVLIEFEDDDGDLSAVDLMEAG 520
++D GANPYY ++E+E+ DGDLS V++ AG
Sbjct: 539 RMDAGANPYYISFVVEYENGDGDLSNVEIQPAG 637
Score = 46.4 bits (95), Expect(3) = 3e-067
Identities = 16/30 (53%), Positives = 24/30 (80%)
Frame = -1 / +2
Query: 426 TSDSRRVLVANNAIPAAWKPGKTYRSLVNY 337
+ +S +V+VA N IPA WKP ++YRS+VN+
Sbjct: 731 SGESHKVIVAYNVIPANWKPDESYRSIVNF 820
Score = 35.9 bits (72), Expect(3) = 3e-067
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = -1 / +2
Query: 531 MEAGSGVWTPMAHNWGATWRLNNGRKLKAPFGLRLTS 421
++ G + M A W++N+G L+ PF +RLTS
Sbjct: 623 IQPAGGSFISMQEMRSAVWKVNSGSALRGPFNIRLTS 733
>ref|NM_105241.3| Arabidopsis thaliana ATEXPB2 (ARABIDOPSIS THALIANA EXPANSIN B2)
AT1G65680 (ATEXPB2) mRNA, complete cds
Length = 822
Score = 114 bits (244), Expect(4) = 1e-058
Identities = 41/67 (61%), Positives = 52/67 (77%)
Frame = -1 / +1
Query: 978 GDGSDGGACGYQTAVGKKPFDSMIAAGSTPLYRGGEGCGACYEVKCTTNAACSGQPVTIV 799
G GSDGGACGY AV + PF M++AG L++ G+GCGACY+VKCT+ +ACS PVT+V
Sbjct: 178 GYGSDGGACGYGNAVAQPPFSKMVSAGGPSLFKSGKGCGACYQVKCTSKSACSKNPVTVV 357
Query: 798 ITDQSPG 778
ITD+ PG
Sbjct: 358 ITDECPG 378
Score = 89.5 bits (189), Expect(4) = 1e-058
Identities = 36/80 (45%), Positives = 53/80 (66%)
Frame = -1 / +1
Query: 762 EVEHFDMSGTAMGAMARPGMADKLRAGGVLRILYRRVPCKYTGVNIAFKVDQGANPYYFD 583
E HFD+SGTA GAMA G +LR G L+ILY++V C Y G + F+VD+G+N F
Sbjct: 388 ESVHFDLSGTAFGAMAISGQDSQLRNVGELQILYKKVECNYIGKTVTFQVDKGSNANSFA 567
Query: 582 VLIEFEDDDGDLSAVDLMEA 523
VL+ + + DG++ ++L +A
Sbjct: 568 VLVAYVNGDGEIGRIELKQA 627
Score = 42.8 bits (87), Expect(4) = 1e-058
Identities = 15/33 (45%), Positives = 21/33 (63%)
Frame = -1 / +1
Query: 519 SGVWTPMAHNWGATWRLNNGRKLKAPFGLRLTS 421
S W M+ +WGA W+L+ L+AP LR+TS
Sbjct: 634 SDKWLSMSQSWGAVWKLDVSSPLRAPLSLRVTS 732
Score = 40.0 bits (81), Expect(4) = 1e-058
Identities = 14/28 (50%), Positives = 21/28 (75%)
Frame = -1 / +1
Query: 420 DSRRVLVANNAIPAAWKPGKTYRSLVNY 337
+S + +VA+N IPA W+PG Y+S VN+
Sbjct: 736 ESGKTVVASNVIPANWQPGAIYKSNVNF 819
>gb|AY084478.1| Arabidopsis thaliana clone 109135 mRNA, complete sequence
Length = 1137
Score = 122 bits (261), Expect(2) = 3e-051
Identities = 48/98 (48%), Positives = 63/98 (64%)
Frame = -1 / +2
Query: 753 HFDMSGTAMGAMARPGMADKLRAGGVLRILYRRVPCKYTGVNIAFKVDQGANPYYFDVLI 574
HFD+SG A G MA PG +R G+L ILYRR CKY G NIAF V+ G+ Y+ +LI
Sbjct: 449 HFDLSGAAFGHMAIPGHNGVIRNRGLLNILYRRTACKYRGKNIAFHVNAGSTDYWLSLLI 628
Query: 573 EFEDDDGDLSAVDLMEAGSGVWTPMAHNWGATWRLNNG 460
E+ED +GD+ ++ + +AGS W M H WGA W + G
Sbjct: 629 EYEDGEGDIGSMHIRQAGSKEWISMKHIWGANWCIVEG 742
Score = 103 bits (219), Expect(2) = 3e-051
Identities = 39/68 (57%), Positives = 48/68 (70%)
Frame = -1 / +2
Query: 978 GDGSDGGACGYQTAVGKKPFDSMIAAGSTPLYRGGEGCGACYEVKCTTNAACSGQPVTIV 799
GDGS GGACGY + V KPF + + A S L++GGEGCGACY+V+C CS + VTI+
Sbjct: 221 GDGSSGGACGYGSLVDVKPFKARVGAVSPILFKGGEGCGACYKVRCLDKTICSKRAVTII 400
Query: 798 ITDQSPGG 775
TDQSP G
Sbjct: 401 ATDQSPSG 424
>ref|NM_127640.1| Arabidopsis thaliana ATEXPB1 (ARABIDOPSIS THALIANA EXPANSIN B1)
AT2G20750 (ATEXPB1) mRNA, complete cds
Length = 1137
Score = 122 bits (261), Expect(2) = 3e-051
Identities = 48/98 (48%), Positives = 63/98 (64%)
Frame = -1 / +2
Query: 753 HFDMSGTAMGAMARPGMADKLRAGGVLRILYRRVPCKYTGVNIAFKVDQGANPYYFDVLI 574
HFD+SG A G MA PG +R G+L ILYRR CKY G NIAF V+ G+ Y+ +LI
Sbjct: 449 HFDLSGAAFGHMAIPGHNGVIRNRGLLNILYRRTACKYRGKNIAFHVNAGSTDYWLSLLI 628
Query: 573 EFEDDDGDLSAVDLMEAGSGVWTPMAHNWGATWRLNNG 460
E+ED +GD+ ++ + +AGS W M H WGA W + G
Sbjct: 629 EYEDGEGDIGSMHIRQAGSKEWISMKHIWGANWCIVEG 742
Score = 103 bits (219), Expect(2) = 3e-051
Identities = 39/68 (57%), Positives = 48/68 (70%)
Frame = -1 / +2
Query: 978 GDGSDGGACGYQTAVGKKPFDSMIAAGSTPLYRGGEGCGACYEVKCTTNAACSGQPVTIV 799
GDGS GGACGY + V KPF + + A S L++GGEGCGACY+V+C CS + VTI+
Sbjct: 221 GDGSSGGACGYGSLVDVKPFKARVGAVSPILFKGGEGCGACYKVRCLDKTICSKRAVTII 400
Query: 798 ITDQSPGG 775
TDQSP G
Sbjct: 401 ATDQSPSG 424
>gb|BT003932.1| Arabidopsis thaliana clone RAFL15-12-F16 (R20717) putative
beta-expansin pollen allergen protein (At2g20750) mRNA,
complete cds
Length = 1124
Score = 122 bits (261), Expect(2) = 3e-051
Identities = 48/98 (48%), Positives = 63/98 (64%)
Frame = -1 / +3
Query: 753 HFDMSGTAMGAMARPGMADKLRAGGVLRILYRRVPCKYTGVNIAFKVDQGANPYYFDVLI 574
HFD+SG A G MA PG +R G+L ILYRR CKY G NIAF V+ G+ Y+ +LI
Sbjct: 447 HFDLSGAAFGHMAIPGHNGVIRNRGLLNILYRRTACKYRGKNIAFHVNAGSTDYWLSLLI 626
Query: 573 EFEDDDGDLSAVDLMEAGSGVWTPMAHNWGATWRLNNG 460
E+ED +GD+ ++ + +AGS W M H WGA W + G
Sbjct: 627 EYEDGEGDIGSMHIRQAGSKEWISMKHIWGANWCIVEG 740
Score = 103 bits (219), Expect(2) = 3e-051
Identities = 39/68 (57%), Positives = 48/68 (70%)
Frame = -1 / +3
Query: 978 GDGSDGGACGYQTAVGKKPFDSMIAAGSTPLYRGGEGCGACYEVKCTTNAACSGQPVTIV 799
GDGS GGACGY + V KPF + + A S L++GGEGCGACY+V+C CS + VTI+
Sbjct: 219 GDGSSGGACGYGSLVDVKPFKARVGAVSPILFKGGEGCGACYKVRCLDKTICSKRAVTII 398
Query: 798 ITDQSPGG 775
TDQSP G
Sbjct: 399 ATDQSPSG 422
>gb|U95967.1|ATU95967 Arabidopsis thaliana beta-expansin mRNA, partial cds
Length = 1037
Score = 122 bits (261), Expect(2) = 3e-051
Identities = 48/98 (48%), Positives = 63/98 (64%)
Frame = -1 / +3
Query: 753 HFDMSGTAMGAMARPGMADKLRAGGVLRILYRRVPCKYTGVNIAFKVDQGANPYYFDVLI 574
HFD+SG A G MA PG +R G+L ILYRR CKY G NIAF V+ G+ Y+ +LI
Sbjct: 351 HFDLSGAAFGHMAIPGHNGVIRNRGLLNILYRRTACKYRGKNIAFHVNAGSTDYWLSLLI 530
Query: 573 EFEDDDGDLSAVDLMEAGSGVWTPMAHNWGATWRLNNG 460
E+ED +GD+ ++ + +AGS W M H WGA W + G
Sbjct: 531 EYEDGEGDIGSMHIRQAGSKEWISMKHIWGANWCIVEG 644
Score = 103 bits (219), Expect(2) = 3e-051
Identities = 39/68 (57%), Positives = 48/68 (70%)
Frame = -1 / +3
Query: 978 GDGSDGGACGYQTAVGKKPFDSMIAAGSTPLYRGGEGCGACYEVKCTTNAACSGQPVTIV 799
GDGS GGACGY + V KPF + + A S L++GGEGCGACY+V+C CS + VTI+
Sbjct: 123 GDGSSGGACGYGSLVDVKPFKARVGAVSPILFKGGEGCGACYKVRCLDKTICSKRAVTII 302
Query: 798 ITDQSPGG 775
TDQSP G
Sbjct: 303 ATDQSPSG 326
>gb|BT005024.1| Arabidopsis thaliana clone U20717 putative beta-expansin pollen
allergen protein (At2g20750) mRNA, complete cds
Length = 847
Score = 122 bits (261), Expect(2) = 3e-051
Identities = 48/98 (48%), Positives = 63/98 (64%)
Frame = -1 / +1
Query: 753 HFDMSGTAMGAMARPGMADKLRAGGVLRILYRRVPCKYTGVNIAFKVDQGANPYYFDVLI 574
HFD+SG A G MA PG +R G+L ILYRR CKY G NIAF V+ G+ Y+ +LI
Sbjct: 385 HFDLSGAAFGHMAIPGHNGVIRNRGLLNILYRRTACKYRGKNIAFHVNAGSTDYWLSLLI 564
Query: 573 EFEDDDGDLSAVDLMEAGSGVWTPMAHNWGATWRLNNG 460
E+ED +GD+ ++ + +AGS W M H WGA W + G
Sbjct: 565 EYEDGEGDIGSMHIRQAGSKEWISMKHIWGANWCIVEG 678
Score = 103 bits (219), Expect(2) = 3e-051
Identities = 39/68 (57%), Positives = 48/68 (70%)
Frame = -1 / +1
Query: 978 GDGSDGGACGYQTAVGKKPFDSMIAAGSTPLYRGGEGCGACYEVKCTTNAACSGQPVTIV 799
GDGS GGACGY + V KPF + + A S L++GGEGCGACY+V+C CS + VTI+
Sbjct: 157 GDGSSGGACGYGSLVDVKPFKARVGAVSPILFKGGEGCGACYKVRCLDKTICSKRAVTII 336
Query: 798 ITDQSPGG 775
TDQSP G
Sbjct: 337 ATDQSPSG 360
>emb|AX589887.1| Sequence 69 from Patent WO02081695
Length = 816
Score = 122 bits (261), Expect(2) = 3e-051
Identities = 48/98 (48%), Positives = 63/98 (64%)
Frame = -1 / +1
Query: 753 HFDMSGTAMGAMARPGMADKLRAGGVLRILYRRVPCKYTGVNIAFKVDQGANPYYFDVLI 574
HFD+SG A G MA PG +R G+L ILYRR CKY G NIAF V+ G+ Y+ +LI
Sbjct: 385 HFDLSGAAFGHMAIPGHNGVIRNRGLLNILYRRTACKYRGKNIAFHVNAGSTDYWLSLLI 564
Query: 573 EFEDDDGDLSAVDLMEAGSGVWTPMAHNWGATWRLNNG 460
E+ED +GD+ ++ + +AGS W M H WGA W + G
Sbjct: 565 EYEDGEGDIGSMHIRQAGSKEWISMKHIWGANWCIVEG 678
Score = 103 bits (219), Expect(2) = 3e-051
Identities = 39/68 (57%), Positives = 48/68 (70%)
Frame = -1 / +1
Query: 978 GDGSDGGACGYQTAVGKKPFDSMIAAGSTPLYRGGEGCGACYEVKCTTNAACSGQPVTIV 799
GDGS GGACGY + V KPF + + A S L++GGEGCGACY+V+C CS + VTI+
Sbjct: 157 GDGSSGGACGYGSLVDVKPFKARVGAVSPILFKGGEGCGACYKVRCLDKTICSKRAVTII 336
Query: 798 ITDQSPGG 775
TDQSP G
Sbjct: 337 ATDQSPSG 360
>emb|AX652050.1| Sequence 948 from Patent WO03000898
Length = 816
Score = 122 bits (261), Expect(2) = 3e-051
Identities = 48/98 (48%), Positives = 63/98 (64%)
Frame = -1 / +1
Query: 753 HFDMSGTAMGAMARPGMADKLRAGGVLRILYRRVPCKYTGVNIAFKVDQGANPYYFDVLI 574
HFD+SG A G MA PG +R G+L ILYRR CKY G NIAF V+ G+ Y+ +LI
Sbjct: 385 HFDLSGAAFGHMAIPGHNGVIRNRGLLNILYRRTACKYRGKNIAFHVNAGSTDYWLSLLI 564
Query: 573 EFEDDDGDLSAVDLMEAGSGVWTPMAHNWGATWRLNNG 460
E+ED +GD+ ++ + +AGS W M H WGA W + G
Sbjct: 565 EYEDGEGDIGSMHIRQAGSKEWISMKHIWGANWCIVEG 678
Score = 103 bits (219), Expect(2) = 3e-051
Identities = 39/68 (57%), Positives = 48/68 (70%)
Frame = -1 / +1
Query: 978 GDGSDGGACGYQTAVGKKPFDSMIAAGSTPLYRGGEGCGACYEVKCTTNAACSGQPVTIV 799
GDGS GGACGY + V KPF + + A S L++GGEGCGACY+V+C CS + VTI+
Sbjct: 157 GDGSSGGACGYGSLVDVKPFKARVGAVSPILFKGGEGCGACYKVRCLDKTICSKRAVTII 336
Query: 798 ITDQSPGG 775
TDQSP G
Sbjct: 337 ATDQSPSG 360
>emb|CQ805662.1| Sequence 2073 from Patent WO2004035798
Length = 816
Score = 122 bits (261), Expect(2) = 3e-051
Identities = 48/98 (48%), Positives = 63/98 (64%)
Frame = -1 / +1
Query: 753 HFDMSGTAMGAMARPGMADKLRAGGVLRILYRRVPCKYTGVNIAFKVDQGANPYYFDVLI 574
HFD+SG A G MA PG +R G+L ILYRR CKY G NIAF V+ G+ Y+ +LI
Sbjct: 385 HFDLSGAAFGHMAIPGHNGVIRNRGLLNILYRRTACKYRGKNIAFHVNAGSTDYWLSLLI 564
Query: 573 EFEDDDGDLSAVDLMEAGSGVWTPMAHNWGATWRLNNG 460
E+ED +GD+ ++ + +AGS W M H WGA W + G
Sbjct: 565 EYEDGEGDIGSMHIRQAGSKEWISMKHIWGANWCIVEG 678
Score = 103 bits (219), Expect(2) = 3e-051
Identities = 39/68 (57%), Positives = 48/68 (70%)
Frame = -1 / +1
Query: 978 GDGSDGGACGYQTAVGKKPFDSMIAAGSTPLYRGGEGCGACYEVKCTTNAACSGQPVTIV 799
GDGS GGACGY + V KPF + + A S L++GGEGCGACY+V+C CS + VTI+
Sbjct: 157 GDGSSGGACGYGSLVDVKPFKARVGAVSPILFKGGEGCGACYKVRCLDKTICSKRAVTII 336
Query: 798 ITDQSPGG 775
TDQSP G
Sbjct: 337 ATDQSPSG 360
>gb|AC007234.3|AC007234 Genomic sequence for Arabidopsis thaliana BAC F1E22, complete sequence
Length = 92356
Score = 100 bits (212), Expect(5) = 4e-050
Identities = 37/67 (55%), Positives = 49/67 (73%)
Frame = -1 / +2
Query: 855 YEVKCTTNAACSGQPVTIVITDQSPGGLFPGEVEHFDMSGTAMGAMARPGMADKLRAGGV 676
Y++ C + ACS +P+T+ ITD+ PGG E HFD+SG AMGA+ARPG D+LR+ GV
Sbjct: 27455 YQILCNGHPACSRRPITVTITDECPGGPCASEPAHFDLSGKAMGALARPGQGDRLRSAGV 27634
Query: 675 LRILYRR 655
LR+ YRR
Sbjct: 27635 LRVYYRR 27655
Score = 67.0 bits (140), Expect(5) = 4e-050
Identities = 22/41 (53%), Positives = 31/41 (75%)
Frame = -1 / +3
Query: 969 SDGGACGYQTAVGKKPFDSMIAAGSTPLYRGGEGCGACYEV 847
++GGACGY AV + PF M++AG L++ G+GCGACY+V
Sbjct: 25080 NEGGACGYGNAVAQPPFSKMVSAGGPSLFKSGKGCGACYQV 25202
Score = 60.6 bits (126), Expect(5) = 4e-050
Identities = 21/44 (47%), Positives = 31/44 (70%)
Frame = -1 / +3
Query: 654 VPCKYTGVNIAFKVDQGANPYYFDVLIEFEDDDGDLSAVDLMEA 523
V C Y NIAF++D GANPYY ++E+E+ DGDL+ +++ A
Sbjct: 27864 VECLYRRTNIAFRMDPGANPYYISFVVEYENGDGDLAYIEIQPA 27995
Score = 46.9 bits (96), Expect(5) = 4e-050
Identities = 16/30 (53%), Positives = 25/30 (83%)
Frame = -1 / +3
Query: 426 TSDSRRVLVANNAIPAAWKPGKTYRSLVNY 337
+++S +V++A N IPA WKP +TYRS+VN+
Sbjct: 28092 SAESHKVVLAYNVIPANWKPNETYRSVVNF 28181
Score = 36.3 bits (73), Expect(5) = 4e-050
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = -1 / +3
Query: 531 MEAGSGVWTPMAHNWGATWRLNNGRKLKAPFGLRLTS 421
++ G + PM A W++++G L PF +RLTS
Sbjct: 27984 IQPADGEFIPMQEMRSAVWKISSGSPLTGPFNIRLTS 28094
>ref|NM_118965.2| Arabidopsis thaliana ATEXPB3 (ARABIDOPSIS THALIANA EXPANSIN B3)
AT4G28250 (ATEXPB3) mRNA, complete cds
Length = 1299
Score = 114 bits (244), Expect(2) = 1e-048
Identities = 41/98 (41%), Positives = 63/98 (64%)
Frame = -1 / +1
Query: 753 HFDMSGTAMGAMARPGMADKLRAGGVLRILYRRVPCKYTGVNIAFKVDQGANPYYFDVLI 574
HFD+SG G +A G + LR G++ ++YRR CKY G NIAF V++G+ ++ +L+
Sbjct: 460 HFDLSGAVFGRLAIAGESGPLRNRGLIPVIYRRTACKYRGKNIAFHVNEGSTDFWLSLLV 639
Query: 573 EFEDDDGDLSAVDLMEAGSGVWTPMAHNWGATWRLNNG 460
EFED +GD+ ++ + +AG+ W M H WGA W + G
Sbjct: 640 EFEDGEGDIGSMHIRQAGAREWLEMKHVWGANWCIIGG 753
Score = 102 bits (217), Expect(2) = 1e-048
Identities = 37/68 (54%), Positives = 49/68 (72%)
Frame = -1 / +1
Query: 981 NGDGSDGGACGYQTAVGKKPFDSMIAAGSTPLYRGGEGCGACYEVKCTTNAACSGQPVTI 802
NGDGSDGGACGY T V KP + + A + L++ GEGCGACY+V+C + CS + VT+
Sbjct: 238 NGDGSDGGACGYGTLVDVKPLHARVGAVNPILFKNGEGCGACYKVRCLDKSICSRRAVTV 417
Query: 801 VITDQSPG 778
+ITD+ PG
Sbjct: 418 IITDECPG 441
>gb|AY087228.1| Arabidopsis thaliana clone 33023 mRNA, complete sequence
Length = 1257
Score = 114 bits (244), Expect(2) = 1e-048
Identities = 41/98 (41%), Positives = 63/98 (64%)
Frame = -1 / +3
Query: 753 HFDMSGTAMGAMARPGMADKLRAGGVLRILYRRVPCKYTGVNIAFKVDQGANPYYFDVLI 574
HFD+SG G +A G + LR G++ ++YRR CKY G NIAF V++G+ ++ +L+
Sbjct: 465 HFDLSGAVFGRLAIAGESGPLRNRGLIPVIYRRTACKYRGKNIAFHVNEGSTDFWLSLLV 644
Query: 573 EFEDDDGDLSAVDLMEAGSGVWTPMAHNWGATWRLNNG 460
EFED +GD+ ++ + +AG+ W M H WGA W + G
Sbjct: 645 EFEDGEGDIGSMHIRQAGAREWLEMKHVWGANWCIIGG 758
Score = 102 bits (217), Expect(2) = 1e-048
Identities = 37/68 (54%), Positives = 49/68 (72%)
Frame = -1 / +3
Query: 981 NGDGSDGGACGYQTAVGKKPFDSMIAAGSTPLYRGGEGCGACYEVKCTTNAACSGQPVTI 802
NGDGSDGGACGY T V KP + + A + L++ GEGCGACY+V+C + CS + VT+
Sbjct: 243 NGDGSDGGACGYGTLVDVKPLHARVGAVNPILFKNGEGCGACYKVRCLDKSICSRRAVTV 422
Query: 801 VITDQSPG 778
+ITD+ PG
Sbjct: 423 IITDECPG 446
>gb|AY039986.1| Arabidopsis thaliana putative beta-expansin/allergen protein
(At4g28250) mRNA, complete cds
Length = 1216
Score = 114 bits (244), Expect(2) = 1e-048
Identities = 41/98 (41%), Positives = 63/98 (64%)
Frame = -1 / +1
Query: 753 HFDMSGTAMGAMARPGMADKLRAGGVLRILYRRVPCKYTGVNIAFKVDQGANPYYFDVLI 574
HFD+SG G +A G + LR G++ ++YRR CKY G NIAF V++G+ ++ +L+
Sbjct: 460 HFDLSGAVFGRLAIAGESGPLRNRGLIPVIYRRTACKYRGKNIAFHVNEGSTDFWLSLLV 639
Query: 573 EFEDDDGDLSAVDLMEAGSGVWTPMAHNWGATWRLNNG 460
EFED +GD+ ++ + +AG+ W M H WGA W + G
Sbjct: 640 EFEDGEGDIGSMHIRQAGAREWLEMKHVWGANWCIIGG 753
Score = 102 bits (217), Expect(2) = 1e-048
Identities = 37/68 (54%), Positives = 49/68 (72%)
Frame = -1 / +1
Query: 981 NGDGSDGGACGYQTAVGKKPFDSMIAAGSTPLYRGGEGCGACYEVKCTTNAACSGQPVTI 802
NGDGSDGGACGY T V KP + + A + L++ GEGCGACY+V+C + CS + VT+
Sbjct: 238 NGDGSDGGACGYGTLVDVKPLHARVGAVNPILFKNGEGCGACYKVRCLDKSICSRRAVTV 417
Query: 801 VITDQSPG 778
+ITD+ PG
Sbjct: 418 IITDECPG 441
>gb|AY133801.1| Arabidopsis thaliana clone U10238 putative beta-expansin/allergen
protein (At4g28250) mRNA, complete cds
Length = 826
Score = 114 bits (244), Expect(2) = 1e-048
Identities = 41/98 (41%), Positives = 63/98 (64%)
Frame = -1 / +1
Query: 753 HFDMSGTAMGAMARPGMADKLRAGGVLRILYRRVPCKYTGVNIAFKVDQGANPYYFDVLI 574
HFD+SG G +A G + LR G++ ++YRR CKY G NIAF V++G+ ++ +L+
Sbjct: 364 HFDLSGAVFGRLAIAGESGPLRNRGLIPVIYRRTACKYRGKNIAFHVNEGSTDFWLSLLV 543
Query: 573 EFEDDDGDLSAVDLMEAGSGVWTPMAHNWGATWRLNNG 460
EFED +GD+ ++ + +AG+ W M H WGA W + G
Sbjct: 544 EFEDGEGDIGSMHIRQAGAREWLEMKHVWGANWCIIGG 657
Score = 102 bits (217), Expect(2) = 1e-048
Identities = 37/68 (54%), Positives = 49/68 (72%)
Frame = -1 / +1
Query: 981 NGDGSDGGACGYQTAVGKKPFDSMIAAGSTPLYRGGEGCGACYEVKCTTNAACSGQPVTI 802
NGDGSDGGACGY T V KP + + A + L++ GEGCGACY+V+C + CS + VT+
Sbjct: 142 NGDGSDGGACGYGTLVDVKPLHARVGAVNPILFKNGEGCGACYKVRCLDKSICSRRAVTV 321
Query: 801 VITDQSPG 778
+ITD+ PG
Sbjct: 322 IITDECPG 345
>gb|CF652567.1|CF652567 63-L020523-066-003-M15-SP6P MPIZ-ADIS-066 Arabidopsis thaliana cDNA
clone MPIZp2001M153Q 5-PRIME, mRNA sequence
Length = 816
Score = 114 bits (244), Expect(2) = 1e-048
Identities = 41/98 (41%), Positives = 63/98 (64%)
Frame = -1 / +2
Query: 753 HFDMSGTAMGAMARPGMADKLRAGGVLRILYRRVPCKYTGVNIAFKVDQGANPYYFDVLI 574
HFD+SG G +A G + LR G++ ++YRR CKY G NIAF V++G+ ++ +L+
Sbjct: 449 HFDLSGAVFGRLAIAGESGPLRNRGLIPVIYRRTACKYRGKNIAFHVNEGSTDFWLSLLV 628
Query: 573 EFEDDDGDLSAVDLMEAGSGVWTPMAHNWGATWRLNNG 460
EFED +GD+ ++ + +AG+ W M H WGA W + G
Sbjct: 629 EFEDGEGDIGSMHIRQAGAREWLEMKHVWGANWCIIGG 742
Score = 102 bits (217), Expect(2) = 1e-048
Identities = 37/68 (54%), Positives = 49/68 (72%)
Frame = -1 / +2
Query: 981 NGDGSDGGACGYQTAVGKKPFDSMIAAGSTPLYRGGEGCGACYEVKCTTNAACSGQPVTI 802
NGDGSDGGACGY T V KP + + A + L++ GEGCGACY+V+C + CS + VT+
Sbjct: 227 NGDGSDGGACGYGTLVDVKPLHARVGAVNPILFKNGEGCGACYKVRCLDKSICSRRAVTV 406
Query: 801 VITDQSPG 778
+ITD+ PG
Sbjct: 407 IITDECPG 430
>gb|AC007659.2|AC007659 Arabidopsis thaliana chromosome II section 241 of 255 of the complete
sequence. Sequence from clones T13E15, T14P1
Length = 87885
Score = 94.1 bits (199), Expect(5) = 1e-047
Identities = 36/67 (53%), Positives = 48/67 (71%)
Frame = -1 / +3
Query: 855 YEVKCTTNAACSGQPVTIVITDQSPGGLFPGEVEHFDMSGTAMGAMARPGMADKLRAGGV 676
Y V C + ACSG P+T+ ITD+ PGG E H D+SG AMGA+A+PG AD+LR+ GV
Sbjct: 65982 Y*VVCIGHPACSGSPITVTITDECPGGPCASEPVHIDLSGKAMGALAKPGQADQLRSAGV 66161
Query: 675 LRILYRR 655
+R+ Y+R
Sbjct: 66162 IRVNYKR 66182
Score = 65.7 bits (137), Expect(5) = 1e-047
Identities = 23/43 (53%), Positives = 31/43 (72%)
Frame = -1 / +2
Query: 648 CKYTGVNIAFKVDQGANPYYFDVLIEFEDDDGDLSAVDLMEAG 520
C Y G NI F++D GANPYY ++E+E+ DGDLS V++ AG
Sbjct: 66551 CLYRGTNIVFRMDAGANPYYISFVVEYENGDGDLSNVEIQPAG 66679
Score = 60.2 bits (125), Expect(5) = 1e-047
Identities = 20/40 (50%), Positives = 28/40 (70%)
Frame = -1 / +2
Query: 963 GGACGYQTAVGKKPFDSMIAAGSTPLYRGGEGCGACYEVK 844
GGACGY +AV P +M++AG L+ G+GCG CY+V+
Sbjct: 65471 GGACGYGSAVANPPLYAMVSAGGPSLFNNGKGCGTCYQVR 65590
Score = 46.4 bits (95), Expect(5) = 1e-047
Identities = 16/30 (53%), Positives = 24/30 (80%)
Frame = -1 / +2
Query: 426 TSDSRRVLVANNAIPAAWKPGKTYRSLVNY 337
+ +S +V+VA N IPA WKP ++YRS+VN+
Sbjct: 66773 SGESHKVIVAYNVIPANWKPDESYRSIVNF 66862
Score = 35.9 bits (72), Expect(5) = 1e-047
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = -1 / +2
Query: 531 MEAGSGVWTPMAHNWGATWRLNNGRKLKAPFGLRLTS 421
++ G + M A W++N+G L+ PF +RLTS
Sbjct: 66665 IQPAGGSFISMQEMRSAVWKVNSGSALRGPFNIRLTS 66775
>gb|AY619565.1| Arabidopsis thaliana beta-expansin 6 (EXPB6) gene, complete cds
Length = 2504
Score = 96.4 bits (204), Expect(5) = 1e-047
Identities = 36/67 (53%), Positives = 48/67 (71%)
Frame = -1 / +2
Query: 855 YEVKCTTNAACSGQPVTIVITDQSPGGLFPGEVEHFDMSGTAMGAMARPGMADKLRAGGV 676
Y++ C + ACS +P+T+ ITD+ PGG E HFD+SG AMGA+ARPG D+LR+ GV
Sbjct: 1769 YQILCNGHPACSRRPITVTITDECPGGPCASEPAHFDLSGKAMGALARPGQGDRLRSAGV 1948
Query: 675 LRILYRR 655
LR+ Y R
Sbjct: 1949 LRVYYIR 1969
Score = 62.0 bits (129), Expect(5) = 1e-047
Identities = 22/45 (48%), Positives = 31/45 (68%)
Frame = -1 / +1
Query: 654 VPCKYTGVNIAFKVDQGANPYYFDVLIEFEDDDGDLSAVDLMEAG 520
V C Y NIAF++D GANPYY ++E+E+ DGDL+ ++ AG
Sbjct: 2179 VECLYRRTNIAFRMDPGANPYYISFVVEYENGDGDLAYTEIQPAG 2313
Score = 47.3 bits (97), Expect(5) = 1e-047
Identities = 17/30 (56%), Positives = 24/30 (80%)
Frame = -1 / +1
Query: 426 TSDSRRVLVANNAIPAAWKPGKTYRSLVNY 337
+++S V+VA N IPA WKP +TYRS+VN+
Sbjct: 2407 SAESHNVVVAYNVIPANWKPNETYRSVVNF 2496
Score = 39.1 bits (79), Expect(5) = 1e-047
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = -1 / +1
Query: 531 MEAGSGVWTPMAHNWGATWRLNNGRKLKAPFGLRLTS 421
++ G + PM A W++N+G L PF +RLTS
Sbjct: 2299 IQPAGGTFIPMQEMRSAVWKVNSGSPLTGPFNIRLTS 2409
Score = 36.8 bits (74), Expect(5) = 1e-047
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = -1 / +2
Query: 939 AVGKKPFDSMIAAGSTPLYRGGEGCGACYEV 847
AV P M++AG ++ G GCG C++V
Sbjct: 1307 AVANPPLYGMVSAGGPSVFNNGIGCGTCFQV 1399
>gb|AE005173.1| Arabidopsis thaliana chromosome 1, bottom arm complete sequence
Length = 14668883
Score = 100 bits (212), Expect(5) = 9e-042
Identities = 37/67 (55%), Positives = 49/67 (73%)
Frame = -1 / +1
Query: 855 YEVKCTTNAACSGQPVTIVITDQSPGGLFPGEVEHFDMSGTAMGAMARPGMADKLRAGGV 676
Y++ C + ACS +P+T+ ITD+ PGG E HFD+SG AMGA+ARPG D+LR+ GV
Sbjct: 8671252 YQILCNGHPACSRRPITVTITDECPGGPCASEPAHFDLSGKAMGALARPGQGDRLRSAGV 8671431
Query: 675 LRILYRR 655
LR+ YRR
Sbjct: 8671432 LRVYYRR 8671452
Score = 67.0 bits (140), Expect(5) = 9e-042
Identities = 22/41 (53%), Positives = 31/41 (75%)
Frame = -1 / +2
Query: 969 SDGGACGYQTAVGKKPFDSMIAAGSTPLYRGGEGCGACYEV 847
++GGACGY AV + PF M++AG L++ G+GCGACY+V
Sbjct: 8668877 NEGGACGYGNAVAQPPFSKMVSAGGPSLFKSGKGCGACYQV 8668999
Score = 60.6 bits (126), Expect(5) = 9e-042
Identities = 21/44 (47%), Positives = 31/44 (70%)
Frame = -1 / +2
Query: 654 VPCKYTGVNIAFKVDQGANPYYFDVLIEFEDDDGDLSAVDLMEA 523
V C Y NIAF++D GANPYY ++E+E+ DGDL+ +++ A
Sbjct: 8671661 VECLYRRTNIAFRMDPGANPYYISFVVEYENGDGDLAYIEIQPA 8671792
Score = 46.9 bits (96), Expect(5) = 9e-042
Identities = 16/30 (53%), Positives = 25/30 (83%)
Frame = -1 / +2
Query: 426 TSDSRRVLVANNAIPAAWKPGKTYRSLVNY 337
+++S +V++A N IPA WKP +TYRS+VN+
Sbjct: 8671889 SAESHKVVLAYNVIPANWKPNETYRSVVNF 8671978
Score = 36.3 bits (73), Expect(5) = 9e-042
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = -1 / +2
Query: 531 MEAGSGVWTPMAHNWGATWRLNNGRKLKAPFGLRLTS 421
++ G + PM A W++++G L PF +RLTS
Sbjct: 8671781 IQPADGEFIPMQEMRSAVWKISSGSPLTGPFNIRLTS 8671891
>gb|AC001229.1|F5I14 Sequence of BAC F5I14 from Arabidopsis thaliana chromosome 1, complete
sequence
Length = 109560
Score = 100 bits (212), Expect(3) = 1e-040
Identities = 37/67 (55%), Positives = 49/67 (73%)
Frame = -1 / +3
Query: 855 YEVKCTTNAACSGQPVTIVITDQSPGGLFPGEVEHFDMSGTAMGAMARPGMADKLRAGGV 676
Y++ C + ACS +P+T+ ITD+ PGG E HFD+SG AMGA+ARPG D+LR+ GV
Sbjct: 109008 YQILCNGHPACSRRPITVTITDECPGGPCASEPAHFDLSGKAMGALARPGQGDRLRSAGV 109187
Query: 675 LRILYRR 655
LR+ YRR
Sbjct: 109188 LRVYYRR 109208
Score = 67.0 bits (140), Expect(3) = 1e-040
Identities = 22/41 (53%), Positives = 31/41 (75%)
Frame = -1 / +1
Query: 969 SDGGACGYQTAVGKKPFDSMIAAGSTPLYRGGEGCGACYEV 847
++GGACGY AV + PF M++AG L++ G+GCGACY+V
Sbjct: 106633 NEGGACGYGNAVAQPPFSKMVSAGGPSLFKSGKGCGACYQV 106755
Score = 60.6 bits (126), Expect(3) = 1e-040
Identities = 21/44 (47%), Positives = 31/44 (70%)
Frame = -1 / +1
Query: 654 VPCKYTGVNIAFKVDQGANPYYFDVLIEFEDDDGDLSAVDLMEA 523
V C Y NIAF++D GANPYY ++E+E+ DGDL+ +++ A
Sbjct: 109417 VECLYRRTNIAFRMDPGANPYYISFVVEYENGDGDLAYIEIQPA 109548
>emb|BX827016.1|CNS0A45X Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTFB87ZG06 of Flowers and buds of strain col-0 of
Arabidopsis thaliana (thale cress)
Length = 1257
Score = 114 bits (244), Expect(3) = 3e-034
Identities = 41/98 (41%), Positives = 63/98 (64%)
Frame = -1 / +2
Query: 753 HFDMSGTAMGAMARPGMADKLRAGGVLRILYRRVPCKYTGVNIAFKVDQGANPYYFDVLI 574
HFD+SG G +A G + LR G++ ++YRR CKY G NIAF V++G+ ++ +L+
Sbjct: 449 HFDLSGAVFGRLAIAGESGPLRNRGLIPVIYRRTACKYRGKNIAFHVNEGSTDFWLSMLV 628
Query: 573 EFEDDDGDLSAVDLMEAGSGVWTPMAHNWGATWRLNNG 460
EFED +GD+ ++ + +AG+ W M H WGA W + G
Sbjct: 629 EFEDGEGDIGSMHIRQAGAREWLEMKHVWGANWCIIGG 742
Score = 46.4 bits (95), Expect(3) = 3e-034
Identities = 21/63 (33%), Positives = 29/63 (46%)
Frame = -1 / +3
Query: 954 CGYQTAVGKKPFDSMIAAGSTPLYRGGEGCGACYEVKCTTNAACSGQPVTIVITDQSPGG 775
CGY T V KP + + A + L++ GEGCG T A G+P+ + P
Sbjct: 255 CGYGTLVDVKPLHARVGAVNPILFKNGEGCGLVTRFDAWTRAFVPGEPLPS*LPMSVPAA 434
Query: 774 LFP 766
L P
Sbjct: 435 LKP 443
Score = 25.8 bits (50), Expect(3) = 3e-034
Identities = 9/9 (100%), Positives = 9/9 (100%)
Frame = -1 / +2
Query: 981 NGDGSDGGA 955
NGDGSDGGA
Sbjct: 227 NGDGSDGGA 253
>gb|AU236632.1|AU236632 AU236632 RAFL15 Arabidopsis thaliana cDNA clone RAFL15-12-F16 5',
mRNA sequence
Length = 651
Score = 103 bits (219), Expect(2) = 7e-034
Identities = 39/68 (57%), Positives = 48/68 (70%)
Frame = -1 / +3
Query: 978 GDGSDGGACGYQTAVGKKPFDSMIAAGSTPLYRGGEGCGACYEVKCTTNAACSGQPVTIV 799
GDGS GGACGY + V KPF + + A S L++GGEGCGACY+V+C CS + VTI+
Sbjct: 243 GDGSSGGACGYGSLVDVKPFKARVGAVSPILFKGGEGCGACYKVRCLDKTICSKRAVTII 422
Query: 798 ITDQSPGG 775
TDQSP G
Sbjct: 423 ATDQSPSG 446
Score = 64.3 bits (134), Expect(2) = 7e-034
Identities = 27/45 (60%), Positives = 30/45 (66%)
Frame = -1 / +3
Query: 753 HFDMSGTAMGAMARPGMADKLRAGGVLRILYRRVPCKYTGVNIAF 619
HFD+SG A G MA PG +R G+L ILYRR CKY G NIAF
Sbjct: 471 HFDLSGAAFGHMAIPGHNGVIRNRGLLNILYRRTACKYRGKNIAF 605
>gb|AC006234.4| Arabidopsis thaliana chromosome 2 clone F5H14 map mi148, complete
sequence
Length = 129667
Score = 93.2 bits (197), Expect(4) = 9e-033
Identities = 35/63 (55%), Positives = 44/63 (69%)
Frame = -1 / -2
Query: 963 GGACGYQTAVGKKPFDSMIAAGSTPLYRGGEGCGACYEVKCTTNAACSGQPVTIVITDQS 784
GGACGY + V KPF + + A S L++GGEGCGACY+V+C CS + VTI+ TDQS
Sbjct: 90228 GGACGYGSLVDVKPFKARVGAVSPILFKGGEGCGACYKVRCLDKTICSKRAVTIIATDQS 90049
Query: 783 PGG 775
P G
Sbjct: 90048 PSG 90040
Score = 56.1 bits (116), Expect(4) = 9e-033
Identities = 20/47 (42%), Positives = 31/47 (65%)
Frame = -1 / -2
Query: 666 LYRRVPCKYTGVNIAFKVDQGANPYYFDVLIEFEDDDGDLSAVDLME 526
L R CKY G NIAF V+ G+ Y+ +LIE+ED +GD+ ++ + +
Sbjct: 89694 LQNRTACKYRGKNIAFHVNAGSTDYWLSLLIEYEDGEGDIGSMHIRQ 89554
Score = 44.6 bits (91), Expect(4) = 9e-033
Identities = 19/33 (57%), Positives = 22/33 (66%)
Frame = -1 / -2
Query: 753 HFDMSGTAMGAMARPGMADKLRAGGVLRILYRR 655
HFD+SG A G MA PG +R G+L ILYRR
Sbjct: 90015 HFDLSGAAFGHMAIPGHNGVIRNRGLLNILYRR 89917
Score = 34.1 bits (68), Expect(4) = 9e-033
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = -1 / -3
Query: 531 MEAGSGVWTPMAHNWGATWRLNNG 460
M+AGS W M H WGA W + G
Sbjct: 89477 MKAGSKEWISMKHIWGANWCIVEG 89406
>gb|AU236831.1|AU236831 AU236831 RAFL15 Arabidopsis thaliana cDNA clone RAFL15-26-E06 5',
mRNA sequence
Length = 582
Score = 121 bits (259), Expect(2) = 2e-031
Identities = 45/89 (50%), Positives = 60/89 (67%)
Frame = -1 / +1
Query: 978 GDGSDGGACGYQTAVGKKPFDSMIAAGSTPLYRGGEGCGACYEVKCTTNAACSGQPVTIV 799
G GS GGACGY +AV P +M++AG L+ G+GCG CY+V C + ACSG P+T+
Sbjct: 211 GAGSTGGACGYGSAVANPPLYAMVSAGGPSLFNNGKGCGTCYQVVCIGHPACSGSPITVT 390
Query: 798 ITDQSPGGLFPGEVEHFDMSGTAMGAMAR 712
ITD+ PGG E H D+SG AMGA+++
Sbjct: 391 ITDECPGGPCASEPVHIDLSGKAMGALSQ 477
Score = 37.7 bits (76), Expect(2) = 2e-031
Identities = 13/27 (48%), Positives = 19/27 (70%)
Frame = -1 / +3
Query: 714 RPGMADKLRAGGVLRILYRRVPCKYTG 634
+PG AD+L + GV+R+ Y+R C Y G
Sbjct: 477 KPGQADQL*SAGVIRVNYKRAACLYRG 557
>emb|AL049803.1|F26K10 Arabidopsis thaliana clone F26K10, *** SEQUENCING IN PROGRESS ***
Length = 49311
Score = 86.8 bits (183), Expect(4) = 8e-030
Identities = 31/62 (50%), Positives = 43/62 (69%)
Frame = -1 / -3
Query: 963 GGACGYQTAVGKKPFDSMIAAGSTPLYRGGEGCGACYEVKCTTNAACSGQPVTIVITDQS 784
GGACGY T V KP + + A + L++ GEGCGACY+V+C + CS + VT++ITD+
Sbjct: 28453 GGACGYGTLVDVKPLHARVGAVNPILFKNGEGCGACYKVRCLDKSICSRRAVTVIITDEC 28274
Query: 783 PG 778
PG
Sbjct: 28273 PG 28268
Score = 56.1 bits (116), Expect(4) = 8e-030
Identities = 18/45 (40%), Positives = 32/45 (71%)
Frame = -1 / -2
Query: 660 RRVPCKYTGVNIAFKVDQGANPYYFDVLIEFEDDDGDLSAVDLME 526
+R CKY G NIAF V++G+ ++ +L+EFED +GD+ ++ + +
Sbjct: 27848 KRTACKYRGKNIAFHVNEGSTDFWLSLLVEFEDGEGDIGSMHIRQ 27714
Score = 37.7 bits (76), Expect(4) = 8e-030
Identities = 14/33 (42%), Positives = 21/33 (63%)
Frame = -1 / -3
Query: 753 HFDMSGTAMGAMARPGMADKLRAGGVLRILYRR 655
HFD+SG G +A G + LR G++ ++YRR
Sbjct: 28249 HFDLSGAVFGRLAIAGESGPLRNRGLIPVIYRR 28151
Score = 33.1 bits (66), Expect(4) = 8e-030
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = -1 / -3
Query: 534 LMEAGSGVWTPMAHNWGATWRLNNG 460
L++AG+ W M H WGA W + G
Sbjct: 27421 LVQAGAREWLEMKHVWGANWCIIGG 27347
>emb|AL161572.2|ATCHRIV68 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 68
Length = 199749
Score = 86.8 bits (183), Expect(4) = 4e-028
Identities = 31/62 (50%), Positives = 43/62 (69%)
Frame = -1 / -2
Query: 963 GGACGYQTAVGKKPFDSMIAAGSTPLYRGGEGCGACYEVKCTTNAACSGQPVTIVITDQS 784
GGACGY T V KP + + A + L++ GEGCGACY+V+C + CS + VT++ITD+
Sbjct: 117173 GGACGYGTLVDVKPLHARVGAVNPILFKNGEGCGACYKVRCLDKSICSRRAVTVIITDEC 116994
Query: 783 PG 778
PG
Sbjct: 116993 PG 116988
Score = 56.1 bits (116), Expect(4) = 4e-028
Identities = 18/45 (40%), Positives = 32/45 (71%)
Frame = -1 / -1
Query: 660 RRVPCKYTGVNIAFKVDQGANPYYFDVLIEFEDDDGDLSAVDLME 526
+R CKY G NIAF V++G+ ++ +L+EFED +GD+ ++ + +
Sbjct: 116568 KRTACKYRGKNIAFHVNEGSTDFWLSLLVEFEDGEGDIGSMHIRQ 116434
Score = 37.7 bits (76), Expect(4) = 4e-028
Identities = 14/33 (42%), Positives = 21/33 (63%)
Frame = -1 / -2
Query: 753 HFDMSGTAMGAMARPGMADKLRAGGVLRILYRR 655
HFD+SG G +A G + LR G++ ++YRR
Sbjct: 116969 HFDLSGAVFGRLAIAGESGPLRNRGLIPVIYRR 116871
Score = 33.1 bits (66), Expect(4) = 4e-028
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = -1 / -2
Query: 534 LMEAGSGVWTPMAHNWGATWRLNNG 460
L++AG+ W M H WGA W + G
Sbjct: 116141 LVQAGAREWLEMKHVWGANWCIIGG 116067
>ref|NM_115921.1| Arabidopsis thaliana ATEXPB5 (ARABIDOPSIS THALIANA EXPANSIN B5)
AT3G60570 (ATEXPB5) mRNA, complete cds
Length = 759
Score = 73.0 bits (153), Expect(4) = 5e-028
Identities = 25/46 (54%), Positives = 33/46 (71%)
Frame = -1 / +1
Query: 978 GDGSDGGACGYQTAVGKKPFDSMIAAGSTPLYRGGEGCGACYEVKC 841
G G+ GGACGY AV K P+ M++AG L++ G+GCGACY +KC
Sbjct: 139 GPGTTGGACGYGDAVAKHPYRCMVSAGGPSLFKDGKGCGACYRLKC 276
Score = 43.7 bits (89), Expect(4) = 5e-028
Identities = 15/36 (41%), Positives = 23/36 (63%)
Frame = -1 / +1
Query: 627 IAFKVDQGANPYYFDVLIEFEDDDGDLSAVDLMEAG 520
IA VD GANPYY ++F + DG+ + +++ AG
Sbjct: 445 IAIHVDAGANPYYMSFAVKFANGDGNFACIEVQPAG 552
Score = 36.8 bits (74), Expect(4) = 5e-028
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = -1 / +1
Query: 417 SRRVLVANNAIPAAWKPGKTYRSLVNYP*KEKYR 316
S + ++A IP W PG Y S VN+P + K +
Sbjct: 655 SGKKIIAKGVIPEKWSPGAIYHSKVNFPVQRKQK 756
Score = 35.9 bits (72), Expect(4) = 5e-028
Identities = 15/37 (40%), Positives = 20/37 (54%)
Frame = -1 / +1
Query: 531 MEAGSGVWTPMAHNWGATWRLNNGRKLKAPFGLRLTS 421
++ G + M A WRL+ G LK PF +RLTS
Sbjct: 538 VQPAGGQYMKMEEMRSAVWRLSPGVPLKGPFNIRLTS 648
>emb|AL138646.2|ATT8B10 Arabidopsis thaliana DNA chromosome 3, BAC clone T8B10
Length = 103787
Score = 62.9 bits (131), Expect(5) = 2e-026
Identities = 22/39 (56%), Positives = 28/39 (71%)
Frame = -1 / +2
Query: 963 GGACGYQTAVGKKPFDSMIAAGSTPLYRGGEGCGACYEV 847
GGACGY AV K P+ M++AG L++ G+GCGACY V
Sbjct: 93047 GGACGYGDAVAKHPYRCMVSAGGPSLFKDGKGCGACYRV 93163
Score = 48.7 bits (100), Expect(5) = 2e-026
Identities = 17/43 (39%), Positives = 26/43 (60%)
Frame = -1 / +3
Query: 648 CKYTGVNIAFKVDQGANPYYFDVLIEFEDDDGDLSAVDLMEAG 520
CK+ IA VD GANPYY ++F + DG+ + +++ AG
Sbjct: 93675 CKHPKTMIAIHVDAGANPYYMSFAVKFANGDGNFACIEVQPAG 93803
Score = 45.1 bits (92), Expect(5) = 2e-026
Identities = 18/36 (50%), Positives = 25/36 (69%)
Frame = -1 / +2
Query: 762 EVEHFDMSGTAMGAMARPGMADKLRAGGVLRILYRR 655
E HFD+SG A GA+A+ G D+LR G L++ Y+R
Sbjct: 93326 ESVHFDLSGKAFGALAKRGKGDQLRNLGELKVSYKR 93433
Score = 36.8 bits (74), Expect(5) = 2e-026
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = -1 / +3
Query: 417 SRRVLVANNAIPAAWKPGKTYRSLVNYP*KEKYR 316
S + ++A IP W PG Y S VN+P + K +
Sbjct: 93906 SGKKIIAKGVIPEKWSPGAIYHSKVNFPVQRKQK 94007
Score = 35.9 bits (72), Expect(5) = 2e-026
Identities = 15/37 (40%), Positives = 20/37 (54%)
Frame = -1 / +3
Query: 531 MEAGSGVWTPMAHNWGATWRLNNGRKLKAPFGLRLTS 421
++ G + M A WRL+ G LK PF +RLTS
Sbjct: 93789 VQPAGGQYMKMEEMRSAVWRLSPGVPLKGPFNIRLTS 93899
>gb|B11878.1|B11878 F5I14-T7.2 IGF Arabidopsis thaliana genomic clone F5I14, DNA
sequence
Length = 1162
Score = 91.8 bits (194), Expect(2) = 2e-025
Identities = 35/67 (52%), Positives = 48/67 (71%)
Frame = -1 / -3
Query: 855 YEVKCTTNAACSGQPVTIVITDQSPGGLFPGEVEHFDMSGTAMGAMARPGMADKLRAGGV 676
Y+++C + A S +P+T+ ITD+ GG E HFD+SG AMGA+ARPG D+LR+ GV
Sbjct: 578 YQIECNGHPAFSRRPITVTITDECLGGPCASEPAHFDLSGKAMGALARPGQGDRLRSAGV 399
Query: 675 LRILYRR 655
LR+ YRR
Sbjct: 398 LRVYYRR 378
Score = 51.0 bits (105), Expect(2) = 2e-025
Identities = 19/47 (40%), Positives = 30/47 (63%)
Frame = -1 / -1
Query: 654 VPCKYTGVNIAFKVDQGANPYYFDVLIEFEDDDGDLSAVDLMEAGSG 514
V C Y NIAF++D GANPYY ++E+E+ DL+ +++ + G
Sbjct: 169 VECLYRRTNIAFRMDPGANPYYISFVVEYENGVLDLADLEIQPSVGG 29
>emb|AJ270060.1| Arabidopsis thaliana DNA chromosome 4, long arm
Length = 14497843
Score = 86.8 bits (183), Expect(3) = 1e-022
Identities = 31/62 (50%), Positives = 43/62 (69%)
Frame = -1 / -3
Query: 963 GGACGYQTAVGKKPFDSMIAAGSTPLYRGGEGCGACYEVKCTTNAACSGQPVTIVITDQS 784
GGACGY T V KP + + A + L++ GEGCGACY+V+C + CS + VT++ITD+
Sbjct: 9914465 GGACGYGTLVDVKPLHARVGAVNPILFKNGEGCGACYKVRCLDKSICSRRAVTVIITDEC 9914286
Query: 783 PG 778
PG
Sbjct: 9914285 PG 9914280
Score = 56.1 bits (116), Expect(3) = 1e-022
Identities = 18/45 (40%), Positives = 32/45 (71%)
Frame = -1 / -2
Query: 660 RRVPCKYTGVNIAFKVDQGANPYYFDVLIEFEDDDGDLSAVDLME 526
+R CKY G NIAF V++G+ ++ +L+EFED +GD+ ++ + +
Sbjct: 9913860 KRTACKYRGKNIAFHVNEGSTDFWLSLLVEFEDGEGDIGSMHIRQ 9913726
Score = 37.7 bits (76), Expect(3) = 1e-022
Identities = 14/33 (42%), Positives = 21/33 (63%)
Frame = -1 / -3
Query: 753 HFDMSGTAMGAMARPGMADKLRAGGVLRILYRR 655
HFD+SG G +A G + LR G++ ++YRR
Sbjct: 9914261 HFDLSGAVFGRLAIAGESGPLRNRGLIPVIYRR 9914163
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 2,138,307,291
Number of Sequences: 1013581
Number of extensions: 26732669
Number of successful extensions: 148928
Number of sequences better than 1.0e-020: 36
length of database: 302,980,290
effective HSP length: 58
effective length of database: 244,192,592
effective search space used: 95967688656
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)