TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 131537.2.170
(744 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
dbj|AK221864.1| Arabidopsis thaliana mRNA for zwille/pinhea... 262 9e-078
ref|NM_122122.2| Arabidopsis thaliana unknown protein AT5G2... 262 1e-077
dbj|AK118258.1| Arabidopsis thaliana At5g21150 mRNA for put... 260 4e-077
emb|AJ544236.1|ATH544236 Arabidopsis thaliana mRNA for ARGO... 260 6e-077
gb|AY035081.1| Arabidopsis thaliana putative Argonaute (AGO... 259 7e-068
gb|AY051033.1| Arabidopsis thaliana putative argonaute AGO1... 259 7e-068
emb|AX505699.1| Sequence 394 from Patent WO0216655 259 7e-068
emb|BX820023.1|CNS0A9EM Arabidopsis thaliana Full-length cD... 259 7e-068
ref|NM_128262.2| Arabidopsis thaliana AGO4 (ARGONAUTE 4) AT... 259 7e-068
ref|NM_122111.2| Arabidopsis thaliana unknown protein AT5G2... 228 2e-067
ref|NM_128854.2| Arabidopsis thaliana unknown protein AT2G3... 208 7e-058
gb|AF296834.1|F22D1 Arabidopsis thaliana BAC F22D1 71 3e-056
gb|AC069325.6|AC069325 Genomic Sequence For Arabidopsis tha... 71 3e-056
gb|AV524024.1|AV524024 AV524024 Arabidopsis thaliana aboveg... 220 4e-056
gb|AV523440.1|AV523440 AV523440 Arabidopsis thaliana aboveg... 216 5e-055
gb|AC005623.3| Arabidopsis thaliana chromosome 2 clone T20P... 78 8e-051
gb|AC140977.1| Arabidopsis thaliana chromosome 5 BAC F13M11... 70 8e-051
gb|AV523915.1|AV523915 AV523915 Arabidopsis thaliana aboveg... 168 2e-040
gb|BX836647.1|BX836647 BX836647 Arabidopsis thaliana Flower... 161 4e-039
gb|AV556836.1|AV556836 AV556836 Arabidopsis thaliana green ... 149 9e-035
gb|AY394564.1| Arabidopsis thaliana ZIPPY mRNA, complete cds 149 9e-035
gb|AC073178.9|AC073178 Arabidopsis thaliana chromosome 1 BA... 149 9e-035
gb|AE005173.1| Arabidopsis thaliana chromosome 1, bottom ar... 149 9e-035
ref|NM_105611.3| Arabidopsis thaliana AGO7 (ARGONAUTE7) AT1... 149 9e-035
ref|NC_003070.5| Arabidopsis thaliana chromosome 1, complet... 149 9e-035
gb|CB260762.1|CB260762 67-E009520-012-003-F21-T7R MPIZ-ADIS... 143 6e-033
emb|AJ223508.1|ART223508 Arabidopsis thaliana mRNA for Zwil... 143 6e-033
emb|AX505737.1| Sequence 432 from Patent WO0216655 143 6e-033
ref|NM_123748.2| Arabidopsis thaliana ZLL (ZWILLE) AT5G4381... 143 6e-033
emb|BX815116.1|CNS0AAU5 Arabidopsis thaliana Full-length cD... 143 8e-033
gb|AV441187.1|AV441187 AV441187 Arabidopsis thaliana above-... 142 1e-032
gb|AV545970.1|AV545970 AV545970 Arabidopsis thaliana roots ... 142 1e-032
gb|AV563657.1|AV563657 AV563657 Arabidopsis thaliana green ... 142 1e-032
gb|CK119358.1|CK119358 212p13.p1 AtM1 Arabidopsis thaliana ... 142 1e-032
gb|U91995.1|ATU91995 Arabidopsis thaliana Argonaute protein... 142 1e-032
gb|AY080690.1| Arabidopsis thaliana At1g48410 mRNA sequence 142 1e-032
gb|BT000941.1| Arabidopsis thaliana clone C105223 putative ... 142 1e-032
emb|BX818680.1|CNS0ACI7 Arabidopsis thaliana Full-length cD... 142 1e-032
ref|NM_103737.2| Arabidopsis thaliana AGO1 (ARGONAUTE 1) AT... 142 1e-032
ref|NM_179453.1| Arabidopsis thaliana AGO1 (ARGONAUTE 1) AT... 142 1e-032
emb|BX943872.1| Arabidopsis thaliana T-DNA flanking sequenc... 71 2e-032
gb|AV523806.1|AV523806 AV523806 Arabidopsis thaliana aboveg... 137 4e-031
emb|BX821460.1|CNS0A8DH Arabidopsis thaliana Full-length cD... 137 5e-031
ref|NM_179779.1| Arabidopsis thaliana unknown protein AT2G2... 137 5e-031
gb|AC003033.3| Arabidopsis thaliana chromosome 2 BAC T21L14... 65 3e-030
gb|BX838222.1|BX838222 BX838222 Arabidopsis thaliana Siliqu... 131 2e-029
gb|AV523023.1|AV523023 AV523023 Arabidopsis thaliana aboveg... 127 5e-028
gb|AE005172.1| Arabidopsis thaliana chromosome 1, top arm c... 115 8e-028
gb|AC007654.2|AC007654 Genomic sequence for Arabidopsis tha... 115 8e-028
ref|NM_102867.1| Arabidopsis thaliana unknown protein AT1G3... 115 8e-028
emb|BX943873.1| Arabidopsis thaliana T-DNA flanking sequenc... 65 2e-027
gb|BT005914.1| Arabidopsis thaliana At1g31280 gene, complet... 111 3e-023
dbj|AK118463.1| Arabidopsis thaliana At1g31280 mRNA for unk... 111 3e-023
ref|NM_102866.1| Arabidopsis thaliana AGO2 AT1G31280 (AGO2)... 111 3e-023
gb|AC005824.3| Arabidopsis thaliana chromosome 2 clone F15K... 51 1e-021
gb|AC006929.4| Arabidopsis thaliana chromosome 2 clone T1E2... 51 1e-021
dbj|AB026651.1| Arabidopsis thaliana genomic DNA, chromosom... 57 1e-021
gb|AF154272.1|AF154272 Arabidopsis thaliana PINHEAD (PINHEA... 57 1e-021
gb|CC794982.1|CC794982 SALK_060402.40.25.x Arabidopsis thal... 71 2e-021
gb|BP656191.1|BP656191 BP656191 RAFL19 Arabidopsis thaliana... 80 3e-021
>dbj|AK221864.1| Arabidopsis thaliana mRNA for zwille/pinhead-like protein, partial
cds, clone: RAFL22-12-J01
Length = 1966
Score = 262 bits (567), Expect(2) = 9e-078
Identities = 100/128 (78%), Positives = 115/128 (89%)
Frame = +2 / +3
Query: 5 WSPKFTVIVAQKNXHTKFFQTASPDNVLPGTVVDSKVCHPKNFDFYMCAHAGMIGTTRPT 184
W PKFTVIVAQKN HTKFFQ+ PDNV PGT++DS++CHP+NFDFY+CAHAGMIGTTRPT
Sbjct: 1281 WHPKFTVIVAQKNHHTKFFQSRGPDNVPPGTIIDSQICHPRNFDFYLCAHAGMIGTTRPT 1460
Query: 185 HYHVLHDEIGFNADEMQEFVHSLSYVYQRSTTAISVVAPVCYAHLAAAQVSTFLRLEEMS 364
HYHVL+DEIGF D++QE VHSLSYVYQRSTTAISVVAPVCYAHLAAAQ+ T ++ EE+S
Sbjct: 1461 HYHVLYDEIGFATDDLQELVHSLSYVYQRSTTAISVVAPVCYAHLAAAQMGTVMKYEELS 1640
Query: 365 DASSSQGG 388
+ SSS GG
Sbjct: 1641 ETSSSHGG 1664
Score = 155 bits (332), Expect(2) = 5e-042
Identities = 81/128 (63%), Positives = 87/128 (67%)
Frame = -1 / -1
Query: 387 PPWLEDASDISSNLRNVLTWAAARWA*HTGATTEMAVVLLWYT*ESE*TNSCISSALKPI 208
PPWLE+ SD SS V AAA+ A*HTGATTE+AVVLLW T*+ E T+S SS PI
Sbjct: 1663 PPWLEEVSDNSSYFITVPICAAAK*A*HTGATTEIAVVLLW*T*DRECTSSWRSSVANPI 1484
Query: 207 SSCRT**WVGLVVPIIPACAHM*KSKFLGWQTLLSTTVPGRTLSGDAV*KNLVWXFF*AT 28
SS RT * VGLVVPI+PA A *KSK G Q LS VPG TLSG KN VW FF AT
Sbjct: 1483 SSYRTW*CVGLVVPIMPAWAQR*KSKLRG*QIWLSMIVPGGTLSGPRDWKNFVWWFFWAT 1304
Query: 27 ITVNLGDH 4
ITVN G H
Sbjct: 1303 ITVNFGCH 1280
Score = 50.6 bits (104), Expect(2) = 9e-078
Identities = 19/34 (55%), Positives = 26/34 (76%)
Frame = +2 / +3
Query: 371 SSSQGGGHTSAGSAPVPELPRLHDKVRSSMFFC* 472
+SS GG T+ G+ PVP +P+LH+ V +SMFFC*
Sbjct: 1644 TSSSHGGMTTPGAVPVPPMPQLHNNVSTSMFFC* 1745
Score = 38.6 bits (78), Expect(2) = 5e-042
Identities = 16/28 (57%), Positives = 17/28 (60%)
Frame = -1 / -1
Query: 468 QKNMELLTLSCRRGSSGTGALPAEVCPP 385
QKNME+ TL C G GTG P V PP
Sbjct: 1741 QKNMEVETLLCSCGIGGTGTAPGVVIPP 1658
>ref|NM_122122.2| Arabidopsis thaliana unknown protein AT5G21150 mRNA, complete cds
Length = 3018
Score = 262 bits (567), Expect(2) = 1e-077
Identities = 100/128 (78%), Positives = 115/128 (89%)
Frame = +2 / +3
Query: 5 WSPKFTVIVAQKNXHTKFFQTASPDNVLPGTVVDSKVCHPKNFDFYMCAHAGMIGTTRPT 184
W PKFTVIVAQKN HTKFFQ+ PDNV PGT++DS++CHP+NFDFY+CAHAGMIGTTRPT
Sbjct: 2343 WHPKFTVIVAQKNHHTKFFQSRGPDNVPPGTIIDSQICHPRNFDFYLCAHAGMIGTTRPT 2522
Query: 185 HYHVLHDEIGFNADEMQEFVHSLSYVYQRSTTAISVVAPVCYAHLAAAQVSTFLRLEEMS 364
HYHVL+DEIGF D++QE VHSLSYVYQRSTTAISVVAPVCYAHLAAAQ+ T ++ EE+S
Sbjct: 2523 HYHVLYDEIGFATDDLQELVHSLSYVYQRSTTAISVVAPVCYAHLAAAQMGTVMKYEELS 2702
Query: 365 DASSSQGG 388
+ SSS GG
Sbjct: 2703 ETSSSHGG 2726
Score = 155 bits (332), Expect(2) = 5e-042
Identities = 81/128 (63%), Positives = 87/128 (67%)
Frame = -1 / -3
Query: 387 PPWLEDASDISSNLRNVLTWAAARWA*HTGATTEMAVVLLWYT*ESE*TNSCISSALKPI 208
PPWLE+ SD SS V AAA+ A*HTGATTE+AVVLLW T*+ E T+S SS PI
Sbjct: 2725 PPWLEEVSDNSSYFITVPICAAAK*A*HTGATTEIAVVLLW*T*DRECTSSWRSSVANPI 2546
Query: 207 SSCRT**WVGLVVPIIPACAHM*KSKFLGWQTLLSTTVPGRTLSGDAV*KNLVWXFF*AT 28
SS RT * VGLVVPI+PA A *KSK G Q LS VPG TLSG KN VW FF AT
Sbjct: 2545 SSYRTW*CVGLVVPIMPAWAQR*KSKLRG*QIWLSMIVPGGTLSGPRDWKNFVWWFFWAT 2366
Query: 27 ITVNLGDH 4
ITVN G H
Sbjct: 2365 ITVNFGCH 2342
Score = 50.1 bits (103), Expect(2) = 1e-077
Identities = 19/34 (55%), Positives = 26/34 (76%)
Frame = +2 / +3
Query: 371 SSSQGGGHTSAGSAPVPELPRLHDKVRSSMFFC* 472
+SS GG T+ G+ PVP +P+LH+ V +SMFFC*
Sbjct: 2706 TSSSHGGITTPGAVPVPPMPQLHNNVSTSMFFC* 2807
Score = 38.6 bits (78), Expect(2) = 5e-042
Identities = 16/28 (57%), Positives = 17/28 (60%)
Frame = -1 / -3
Query: 468 QKNMELLTLSCRRGSSGTGALPAEVCPP 385
QKNME+ TL C G GTG P V PP
Sbjct: 2803 QKNMEVETLLCSCGIGGTGTAPGVVIPP 2720
>dbj|AK118258.1| Arabidopsis thaliana At5g21150 mRNA for putative zwille/pinhead,
complete cds, clone: RAFL19-56-B01
Length = 3090
Score = 260 bits (563), Expect(2) = 4e-077
Identities = 99/128 (77%), Positives = 114/128 (89%)
Frame = +2 / +2
Query: 5 WSPKFTVIVAQKNXHTKFFQTASPDNVLPGTVVDSKVCHPKNFDFYMCAHAGMIGTTRPT 184
W PKFTVIVAQKN HTKFFQ+ PDNV PGT++DS++CHP+NFDFY+CAHAGMIGTTRPT
Sbjct: 2408 WHPKFTVIVAQKNHHTKFFQSRGPDNVPPGTIIDSQICHPRNFDFYLCAHAGMIGTTRPT 2587
Query: 185 HYHVLHDEIGFNADEMQEFVHSLSYVYQRSTTAISVVAPVCYAHLAAAQVSTFLRLEEMS 364
HYHVL+DEIGF D++QE VHSLSYVYQRSTTAISVV PVCYAHLAAAQ+ T ++ EE+S
Sbjct: 2588 HYHVLYDEIGFATDDLQELVHSLSYVYQRSTTAISVVVPVCYAHLAAAQMGTVMKYEELS 2767
Query: 365 DASSSQGG 388
+ SSS GG
Sbjct: 2768 ETSSSHGG 2791
Score = 153 bits (328), Expect(2) = 2e-041
Identities = 80/128 (62%), Positives = 86/128 (67%)
Frame = -1 / -1
Query: 387 PPWLEDASDISSNLRNVLTWAAARWA*HTGATTEMAVVLLWYT*ESE*TNSCISSALKPI 208
PPWLE+ SD SS V AAA+ A*HTG TTE+AVVLLW T*+ E T+S SS PI
Sbjct: 2790 PPWLEEVSDNSSYFITVPICAAAK*A*HTGTTTEIAVVLLW*T*DRECTSSWRSSVANPI 2611
Query: 207 SSCRT**WVGLVVPIIPACAHM*KSKFLGWQTLLSTTVPGRTLSGDAV*KNLVWXFF*AT 28
SS RT * VGLVVPI+PA A *KSK G Q LS VPG TLSG KN VW FF AT
Sbjct: 2610 SSYRTW*CVGLVVPIMPAWAQR*KSKLRG*QIWLSMIVPGGTLSGPRDWKNFVWWFFWAT 2431
Query: 27 ITVNLGDH 4
ITVN G H
Sbjct: 2430 ITVNFGCH 2407
Score = 50.1 bits (103), Expect(2) = 4e-077
Identities = 19/34 (55%), Positives = 26/34 (76%)
Frame = +2 / +2
Query: 371 SSSQGGGHTSAGSAPVPELPRLHDKVRSSMFFC* 472
+SS GG T+ G+ PVP +P+LH+ V +SMFFC*
Sbjct: 2771 TSSSHGGITTPGAVPVPPMPQLHNNVSTSMFFC* 2872
Score = 38.6 bits (78), Expect(2) = 2e-041
Identities = 16/28 (57%), Positives = 17/28 (60%)
Frame = -1 / -1
Query: 468 QKNMELLTLSCRRGSSGTGALPAEVCPP 385
QKNME+ TL C G GTG P V PP
Sbjct: 2868 QKNMEVETLLCSCGIGGTGTAPGVVIPP 2785
>emb|AJ544236.1|ATH544236 Arabidopsis thaliana mRNA for ARGONAUTE9 protein (At5g21150 gene)
Length = 2897
Score = 260 bits (562), Expect(2) = 6e-077
Identities = 99/128 (77%), Positives = 115/128 (89%)
Frame = +2 / +1
Query: 5 WSPKFTVIVAQKNXHTKFFQTASPDNVLPGTVVDSKVCHPKNFDFYMCAHAGMIGTTRPT 184
W PKFTVIVAQKN HTKFFQ+ PDNV PGT++DS++CHP+NFDFY+CAHAGMIGTTRPT
Sbjct: 2227 WHPKFTVIVAQKNHHTKFFQSRGPDNVPPGTIIDSQICHPRNFDFYLCAHAGMIGTTRPT 2406
Query: 185 HYHVLHDEIGFNADEMQEFVHSLSYVYQRSTTAISVVAPVCYAHLAAAQVSTFLRLEEMS 364
HYHVL+DEIGF D++QE VHSLS+VYQRSTTAISVVAPVCYAHLAAAQ+ T ++ EE+S
Sbjct: 2407 HYHVLYDEIGFATDDLQELVHSLSHVYQRSTTAISVVAPVCYAHLAAAQMGTVMKYEELS 2586
Query: 365 DASSSQGG 388
+ SSS GG
Sbjct: 2587 ETSSSHGG 2610
Score = 152 bits (327), Expect(2) = 1e-041
Identities = 80/128 (62%), Positives = 86/128 (67%)
Frame = -1 / -1
Query: 387 PPWLEDASDISSNLRNVLTWAAARWA*HTGATTEMAVVLLWYT*ESE*TNSCISSALKPI 208
PPWLE+ SD SS V AAA+ A*HTGATTE+AVVLLW T + E T+S SS PI
Sbjct: 2609 PPWLEEVSDNSSYFITVPICAAAK*A*HTGATTEIAVVLLW*TWDRECTSSWRSSVANPI 2430
Query: 207 SSCRT**WVGLVVPIIPACAHM*KSKFLGWQTLLSTTVPGRTLSGDAV*KNLVWXFF*AT 28
SS RT * VGLVVPI+PA A *KSK G Q LS VPG TLSG KN VW FF AT
Sbjct: 2429 SSYRTW*CVGLVVPIMPAWAQR*KSKLRG*QIWLSMIVPGGTLSGPRDWKNFVWWFFWAT 2250
Query: 27 ITVNLGDH 4
ITVN G H
Sbjct: 2249 ITVNFGCH 2226
Score = 50.1 bits (103), Expect(2) = 6e-077
Identities = 19/34 (55%), Positives = 26/34 (76%)
Frame = +2 / +1
Query: 371 SSSQGGGHTSAGSAPVPELPRLHDKVRSSMFFC* 472
+SS GG T+ G+ PVP +P+LH+ V +SMFFC*
Sbjct: 2590 TSSSHGGITTPGTVPVPPMPQLHNNVSTSMFFC* 2691
Score = 39.6 bits (80), Expect(2) = 1e-041
Identities = 16/28 (57%), Positives = 18/28 (64%)
Frame = -1 / -1
Query: 468 QKNMELLTLSCRRGSSGTGALPAEVCPP 385
QKNME+ TL C G GTG +P V PP
Sbjct: 2687 QKNMEVETLLCSCGIGGTGTVPGVVIPP 2604
>gb|AY035081.1| Arabidopsis thaliana putative Argonaute (AGO1) protein (At2g27040)
mRNA, complete cds
Length = 3171
Score = 259 bits (560), Expect = 7e-068
Identities = 97/128 (75%), Positives = 116/128 (90%)
Frame = +2 / +2
Query: 5 WSPKFTVIVAQKNXHTKFFQTASPDNVLPGTVVDSKVCHPKNFDFYMCAHAGMIGTTRPT 184
W+PKF ++VAQKN HTKFFQ SP+NV PGT++D+K+CHPKN DFY+CAHAGMIGTTRPT
Sbjct: 2441 WNPKFLLLVAQKNHHTKFFQPTSPENVPPGTIIDNKICHPKNNDFYLCAHAGMIGTTRPT 2620
Query: 185 HYHVLHDEIGFNADEMQEFVHSLSYVYQRSTTAISVVAPVCYAHLAAAQVSTFLRLEEMS 364
HYHVL+DEIGF+ADE+QE VHSLSYVYQRST+AISVVAP+CYAHLAAAQ+ TF++ E+ S
Sbjct: 2621 HYHVLYDEIGFSADELQELVHSLSYVYQRSTSAISVVAPICYAHLAAAQLGTFMKFEDQS 2800
Query: 365 DASSSQGG 388
+ SSS GG
Sbjct: 2801 ETSSSHGG 2824
Score = 153 bits (329), Expect(2) = 2e-040
Identities = 84/129 (65%), Positives = 89/129 (68%)
Frame = -1 / -1
Query: 387 PPWLEDASDISSNLRNVLTWAAARWA*HTGATTEMAVVLLWYT*ESE*TNSCISSALKPI 208
PPWL+D SD SSN NV + AAA+ A* GATTEMA+VLLWYT*ESE T+S SSA KPI
Sbjct: 2823 PPWLDDVSD*SSNFMNVPS*AAAK*A*QIGATTEMALVLLWYT*ESEWTSS*SSSAEKPI 2644
Query: 207 SSCRT**WVGLVVPIIPACAHM*KSKFLGWQTLLSTTVPGRTLSGDAV*KNLVWXFF*AT 28
SS RT * VG VVPIIPA A *KS F G LLS VPG T SGD KNLV FF*AT
Sbjct: 2643 SSYRTW**VGRVVPIIPA*AQR*KSLFFG*HILLSMIVPGGTFSGDVGWKNLV**FF*AT 2464
Query: 27 ITVNLGDHF 1
N G F
Sbjct: 2463 NKRNFGFQF 2437
Score = 34.5 bits (69), Expect(2) = 2e-040
Identities = 17/29 (58%), Positives = 17/29 (58%)
Frame = -1 / -1
Query: 471 *QKNMELLTLSCRRGSSGTGALPAEVCPP 385
*QKNMEL TLS GS T P V PP
Sbjct: 2904 *QKNMELATLSLSLGSCATEIGPGAVIPP 2818
>gb|AY051033.1| Arabidopsis thaliana putative argonaute AGO1 protein (At2g27040)
mRNA, complete cds
Length = 2806
Score = 259 bits (560), Expect = 7e-068
Identities = 97/128 (75%), Positives = 116/128 (90%)
Frame = +2 / +1
Query: 5 WSPKFTVIVAQKNXHTKFFQTASPDNVLPGTVVDSKVCHPKNFDFYMCAHAGMIGTTRPT 184
W+PKF ++VAQKN HTKFFQ SP+NV PGT++D+K+CHPKN DFY+CAHAGMIGTTRPT
Sbjct: 2311 WNPKFLLLVAQKNHHTKFFQPTSPENVPPGTIIDNKICHPKNNDFYLCAHAGMIGTTRPT 2490
Query: 185 HYHVLHDEIGFNADEMQEFVHSLSYVYQRSTTAISVVAPVCYAHLAAAQVSTFLRLEEMS 364
HYHVL+DEIGF+ADE+QE VHSLSYVYQRST+AISVVAP+CYAHLAAAQ+ TF++ E+ S
Sbjct: 2491 HYHVLYDEIGFSADELQELVHSLSYVYQRSTSAISVVAPICYAHLAAAQLGTFMKFEDQS 2670
Query: 365 DASSSQGG 388
+ SSS GG
Sbjct: 2671 ETSSSHGG 2694
Score = 153 bits (329), Expect(2) = 2e-040
Identities = 84/129 (65%), Positives = 89/129 (68%)
Frame = -1 / -3
Query: 387 PPWLEDASDISSNLRNVLTWAAARWA*HTGATTEMAVVLLWYT*ESE*TNSCISSALKPI 208
PPWL+D SD SSN NV + AAA+ A* GATTEMA+VLLWYT*ESE T+S SSA KPI
Sbjct: 2693 PPWLDDVSD*SSNFMNVPS*AAAK*A*QIGATTEMALVLLWYT*ESEWTSS*SSSAEKPI 2514
Query: 207 SSCRT**WVGLVVPIIPACAHM*KSKFLGWQTLLSTTVPGRTLSGDAV*KNLVWXFF*AT 28
SS RT * VG VVPIIPA A *KS F G LLS VPG T SGD KNLV FF*AT
Sbjct: 2513 SSYRTW**VGRVVPIIPA*AQR*KSLFFG*HILLSMIVPGGTFSGDVGWKNLV**FF*AT 2334
Query: 27 ITVNLGDHF 1
N G F
Sbjct: 2333 NKRNFGFQF 2307
Score = 34.5 bits (69), Expect(2) = 2e-040
Identities = 17/29 (58%), Positives = 17/29 (58%)
Frame = -1 / -3
Query: 471 *QKNMELLTLSCRRGSSGTGALPAEVCPP 385
*QKNMEL TLS GS T P V PP
Sbjct: 2774 *QKNMELATLSLSLGSCATEIGPGAVIPP 2688
>emb|AX505699.1| Sequence 394 from Patent WO0216655
Length = 2793
Score = 259 bits (560), Expect = 7e-068
Identities = 97/128 (75%), Positives = 116/128 (90%)
Frame = +2 / +1
Query: 5 WSPKFTVIVAQKNXHTKFFQTASPDNVLPGTVVDSKVCHPKNFDFYMCAHAGMIGTTRPT 184
W+PKF ++VAQKN HTKFFQ SP+NV PGT++D+K+CHPKN DFY+CAHAGMIGTTRPT
Sbjct: 2329 WNPKFLLLVAQKNHHTKFFQPTSPENVPPGTIIDNKICHPKNNDFYLCAHAGMIGTTRPT 2508
Query: 185 HYHVLHDEIGFNADEMQEFVHSLSYVYQRSTTAISVVAPVCYAHLAAAQVSTFLRLEEMS 364
HYHVL+DEIGF+ADE+QE VHSLSYVYQRST+AISVVAP+CYAHLAAAQ+ TF++ E+ S
Sbjct: 2509 HYHVLYDEIGFSADELQELVHSLSYVYQRSTSAISVVAPICYAHLAAAQLGTFMKFEDQS 2688
Query: 365 DASSSQGG 388
+ SSS GG
Sbjct: 2689 ETSSSHGG 2712
Score = 153 bits (329), Expect(2) = 2e-040
Identities = 84/129 (65%), Positives = 89/129 (68%)
Frame = -1 / -2
Query: 387 PPWLEDASDISSNLRNVLTWAAARWA*HTGATTEMAVVLLWYT*ESE*TNSCISSALKPI 208
PPWL+D SD SSN NV + AAA+ A* GATTEMA+VLLWYT*ESE T+S SSA KPI
Sbjct: 2711 PPWLDDVSD*SSNFMNVPS*AAAK*A*QIGATTEMALVLLWYT*ESEWTSS*SSSAEKPI 2532
Query: 207 SSCRT**WVGLVVPIIPACAHM*KSKFLGWQTLLSTTVPGRTLSGDAV*KNLVWXFF*AT 28
SS RT * VG VVPIIPA A *KS F G LLS VPG T SGD KNLV FF*AT
Sbjct: 2531 SSYRTW**VGRVVPIIPA*AQR*KSLFFG*HILLSMIVPGGTFSGDVGWKNLV**FF*AT 2352
Query: 27 ITVNLGDHF 1
N G F
Sbjct: 2351 NKRNFGFQF 2325
Score = 34.5 bits (69), Expect(2) = 2e-040
Identities = 17/29 (58%), Positives = 17/29 (58%)
Frame = -1 / -2
Query: 471 *QKNMELLTLSCRRGSSGTGALPAEVCPP 385
*QKNMEL TLS GS T P V PP
Sbjct: 2792 *QKNMELATLSLSLGSCATEIGPGAVIPP 2706
>emb|BX820023.1|CNS0A9EM Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTLS63ZA02 of Adult vegetative tissue of strain col-0
of Arabidopsis thaliana (thale cress)
Length = 838
Score = 259 bits (560), Expect = 7e-068
Identities = 97/128 (75%), Positives = 116/128 (90%)
Frame = +2 / +2
Query: 5 WSPKFTVIVAQKNXHTKFFQTASPDNVLPGTVVDSKVCHPKNFDFYMCAHAGMIGTTRPT 184
W+PKF ++VAQKN HTKFFQ SP+NV PGT++D+K+CHPKN DFY+CAHAGMIGTTRPT
Sbjct: 155 WNPKFLLLVAQKNHHTKFFQPTSPENVPPGTIIDNKICHPKNNDFYLCAHAGMIGTTRPT 334
Query: 185 HYHVLHDEIGFNADEMQEFVHSLSYVYQRSTTAISVVAPVCYAHLAAAQVSTFLRLEEMS 364
HYHVL+DEIGF+ADE+QE VHSLSYVYQRST+AISVVAP+CYAHLAAAQ+ TF++ E+ S
Sbjct: 335 HYHVLYDEIGFSADELQELVHSLSYVYQRSTSAISVVAPICYAHLAAAQLGTFMKFEDQS 514
Query: 365 DASSSQGG 388
+ SSS GG
Sbjct: 515 ETSSSHGG 538
Score = 153 bits (329), Expect(2) = 2e-040
Identities = 84/129 (65%), Positives = 89/129 (68%)
Frame = -1 / -2
Query: 387 PPWLEDASDISSNLRNVLTWAAARWA*HTGATTEMAVVLLWYT*ESE*TNSCISSALKPI 208
PPWL+D SD SSN NV + AAA+ A* GATTEMA+VLLWYT*ESE T+S SSA KPI
Sbjct: 537 PPWLDDVSD*SSNFMNVPS*AAAK*A*QIGATTEMALVLLWYT*ESEWTSS*SSSAEKPI 358
Query: 207 SSCRT**WVGLVVPIIPACAHM*KSKFLGWQTLLSTTVPGRTLSGDAV*KNLVWXFF*AT 28
SS RT * VG VVPIIPA A *KS F G LLS VPG T SGD KNLV FF*AT
Sbjct: 357 SSYRTW**VGRVVPIIPA*AQR*KSLFFG*HILLSMIVPGGTFSGDVGWKNLV**FF*AT 178
Query: 27 ITVNLGDHF 1
N G F
Sbjct: 177 NKRNFGFQF 151
Score = 34.5 bits (69), Expect(2) = 2e-040
Identities = 17/29 (58%), Positives = 17/29 (58%)
Frame = -1 / -2
Query: 471 *QKNMELLTLSCRRGSSGTGALPAEVCPP 385
*QKNMEL TLS GS T P V PP
Sbjct: 618 *QKNMELATLSLSLGSCATEIGPGAVIPP 532
>ref|NM_128262.2| Arabidopsis thaliana AGO4 (ARGONAUTE 4) AT2G27040 (AGO4) mRNA,
complete cds
Length = 3166
Score = 259 bits (560), Expect = 7e-068
Identities = 97/128 (75%), Positives = 116/128 (90%)
Frame = +2 / +2
Query: 5 WSPKFTVIVAQKNXHTKFFQTASPDNVLPGTVVDSKVCHPKNFDFYMCAHAGMIGTTRPT 184
W+PKF ++VAQKN HTKFFQ SP+NV PGT++D+K+CHPKN DFY+CAHAGMIGTTRPT
Sbjct: 2441 WNPKFLLLVAQKNHHTKFFQPTSPENVPPGTIIDNKICHPKNNDFYLCAHAGMIGTTRPT 2620
Query: 185 HYHVLHDEIGFNADEMQEFVHSLSYVYQRSTTAISVVAPVCYAHLAAAQVSTFLRLEEMS 364
HYHVL+DEIGF+ADE+QE VHSLSYVYQRST+AISVVAP+CYAHLAAAQ+ TF++ E+ S
Sbjct: 2621 HYHVLYDEIGFSADELQELVHSLSYVYQRSTSAISVVAPICYAHLAAAQLGTFMKFEDQS 2800
Query: 365 DASSSQGG 388
+ SSS GG
Sbjct: 2801 ETSSSHGG 2824
Score = 153 bits (329), Expect(2) = 2e-040
Identities = 84/129 (65%), Positives = 89/129 (68%)
Frame = -1 / -2
Query: 387 PPWLEDASDISSNLRNVLTWAAARWA*HTGATTEMAVVLLWYT*ESE*TNSCISSALKPI 208
PPWL+D SD SSN NV + AAA+ A* GATTEMA+VLLWYT*ESE T+S SSA KPI
Sbjct: 2823 PPWLDDVSD*SSNFMNVPS*AAAK*A*QIGATTEMALVLLWYT*ESEWTSS*SSSAEKPI 2644
Query: 207 SSCRT**WVGLVVPIIPACAHM*KSKFLGWQTLLSTTVPGRTLSGDAV*KNLVWXFF*AT 28
SS RT * VG VVPIIPA A *KS F G LLS VPG T SGD KNLV FF*AT
Sbjct: 2643 SSYRTW**VGRVVPIIPA*AQR*KSLFFG*HILLSMIVPGGTFSGDVGWKNLV**FF*AT 2464
Query: 27 ITVNLGDHF 1
N G F
Sbjct: 2463 NKRNFGFQF 2437
Score = 34.5 bits (69), Expect(2) = 2e-040
Identities = 17/29 (58%), Positives = 17/29 (58%)
Frame = -1 / -2
Query: 471 *QKNMELLTLSCRRGSSGTGALPAEVCPP 385
*QKNMEL TLS GS T P V PP
Sbjct: 2904 *QKNMELATLSLSLGSCATEIGPGAVIPP 2818
>ref|NM_122111.2| Arabidopsis thaliana unknown protein AT5G21030 mRNA, complete cds
Length = 2553
Score = 228 bits (493), Expect(2) = 2e-067
Identities = 87/118 (73%), Positives = 104/118 (88%)
Frame = +2 / +1
Query: 35 QKNXHTKFFQTASPDNVLPGTVVDSKVCHPKNFDFYMCAHAGMIGTTRPTHYHVLHDEIG 214
Q N HTKFFQT SP+NVLPGT++DS +CH N DFY+CAHAG IGTTRPTHYHVL+DEIG
Sbjct: 2119 QINHHTKFFQTESPNNVLPGTIIDSNICHQHNNDFYLCAHAGKIGTTRPTHYHVLYDEIG 2298
Query: 215 FNADEMQEFVHSLSYVYQRSTTAISVVAPVCYAHLAAAQVSTFLRLEEMSDASSSQGG 388
F+ D++QE VHSLSYVYQRSTTAIS+VAP+CYAHLAAAQ++T ++ E+MS+ SSS GG
Sbjct: 2299 FDTDQLQELVHSLSYVYQRSTTAISLVAPICYAHLAAAQMATAMKFEDMSETSSSHGG 2472
Score = 127 bits (271), Expect(2) = 6e-033
Identities = 69/116 (59%), Positives = 76/116 (65%)
Frame = -1 / -2
Query: 387 PPWLEDASDISSNLRNVLTWAAARWA*HTGATTEMAVVLLWYT*ESE*TNSCISSALKPI 208
PPWL++ SD+SSN V AAA+ A*H GAT EMAVVL W T*+SE T+S S PI
Sbjct: 2471 PPWLDEVSDMSSNFIAVAICAAAK*A*HIGATREMAVVLRW*T*DSECTSSWS*SVSNPI 2292
Query: 207 SSCRT**WVGLVVPIIPACAHM*KSKFLGWQTLLSTTVPGRTLSGDAV*KNLVWXF 40
SS T * VGLVVPI PA A *KS Q LLS VPGRTL G +V KN VW F
Sbjct: 2291 SS*STW*CVGLVVPIFPA*AQR*KSLLCW*QMLLSIIVPGRTLLGLSVWKNFVWWF 2124
Score = 50.1 bits (103), Expect(2) = 2e-067
Identities = 20/34 (58%), Positives = 26/34 (76%)
Frame = +2 / +1
Query: 371 SSSQGGGHTSAGSAPVPELPRLHDKVRSSMFFC* 472
+SS GG T+AG+ PVP +P+L+ V SSMFFC*
Sbjct: 2452 TSSSHGGITTAGAVPVPPMPKLNTNVASSMFFC* 2553
Score = 36.3 bits (73), Expect(2) = 6e-033
Identities = 16/28 (57%), Positives = 17/28 (60%)
Frame = -1 / -2
Query: 468 QKNMELLTLSCRRGSSGTGALPAEVCPP 385
QKN+EL TL G GTG PA V PP
Sbjct: 2549 QKNIELATLVFSFGMGGTGTAPAVVIPP 2466
>ref|NM_128854.2| Arabidopsis thaliana unknown protein AT2G32940 mRNA, complete cds
Length = 2637
Score = 208 bits (448), Expect(2) = 7e-058
Identities = 83/119 (69%), Positives = 97/119 (81%)
Frame = +2 / +1
Query: 11 PKFTVIVAQKNXHTKFFQTASPDNVLPGTVVDSKVCHPKNFDFYMCAHAGMIGTTRPTHY 190
PKFTVIVAQKN HTK FQ P+NV GTVVD+K+ HP N+DFYMCAHAG IGT+RP HY
Sbjct: 2215 PKFTVIVAQKNHHTKLFQAKGPENVPAGTVVDTKIVHPTNYDFYMCAHAGKIGTSRPAHY 2394
Query: 191 HVLHDEIGFNADEMQEFVHSLSYVYQRSTTAISVVAPVCYAHLAAAQVSTFLRLEEMSD 367
HVL DEIGF+ D++Q +HSLSYV QRSTTA S+VAPV YAHLAAAQV+ F + E +S+
Sbjct: 2395 HVLLDEIGFSPDDLQNLIHSLSYVNQRSTTATSIVAPVRYAHLAAAQVAQFTKFEGISE 2571
Score = 139 bits (299), Expect(2) = 8e-036
Identities = 74/120 (61%), Positives = 79/120 (65%)
Frame = -1 / -2
Query: 369 ASDISSNLRNVLTWAAARWA*HTGATTEMAVVLLWYT*ESE*TNSCISSALKPISSCRT* 190
+SDI SN N T AAAR A TGAT E+AVVL W T*E E C SS KPISS T
Sbjct: 2573 SSDIPSNFVNCAT*AAAR*AYRTGATIEVAVVLRWLT*EREWMRFCKSSGEKPISSSNTW 2394
Query: 189 *WVGLVVPIIPACAHM*KSKFLGWQTLLSTTVPGRTLSGDAV*KNLVWXFF*ATITVNLG 10
* GL VPI PA AHM*KS F+G L+STTVP T SG * NLVW FF*AT+TVN G
Sbjct: 2393 **AGLEVPIFPA*AHM*KS*FVGCTILVSTTVPAGTFSGPLA*NNLVWWFF*ATMTVNFG 2214
Score = 38.6 bits (78), Expect(2) = 7e-058
Identities = 14/19 (73%), Positives = 16/19 (84%)
Frame = +2 / +1
Query: 416 VPELPRLHDKVRSSMFFC* 472
VPELPRLH+ V +MFFC*
Sbjct: 2581 VPELPRLHENVEGNMFFC* 2637
Score = 33.1 bits (66), Expect(2) = 8e-036
Identities = 14/18 (77%), Positives = 14/18 (77%)
Frame = -1 / -2
Query: 468 QKNMELLTLSCRRGSSGT 415
QKNM T SCRRGSSGT
Sbjct: 2633 QKNMLPSTFSCRRGSSGT 2580
>gb|AF296834.1|F22D1 Arabidopsis thaliana BAC F22D1
Length = 96102
Score = 71.2 bits (149), Expect(6) = 3e-056
Identities = 26/32 (81%), Positives = 30/32 (93%)
Frame = +2 / -1
Query: 167 GTTRPTHYHVLHDEIGFNADEMQEFVHSLSYV 262
GTTRPTHYHVL+DEIGF+ D++QE VHSLSYV
Sbjct: 84063 GTTRPTHYHVLYDEIGFDTDQLQELVHSLSYV 83968
Score = 58.8 bits (122), Expect(6) = 3e-056
Identities = 24/39 (61%), Positives = 28/39 (71%)
Frame = +2 / -3
Query: 2 KWSPKFTVIVAQKNXHTKFFQTASPDNVLPGTVVDSKVC 118
K PKFT+I+AQ N HTKFFQT SP+NVLPG + C
Sbjct: 84397 K*DPKFTLIIAQINHHTKFFQTESPNNVLPGKQLQIFFC 84281
Score = 57.0 bits (118), Expect(6) = 3e-056
Identities = 21/32 (65%), Positives = 28/32 (87%)
Frame = +2 / -1
Query: 293 VAPVCYAHLAAAQVSTFLRLEEMSDASSSQGG 388
VAP+CYAHLAAAQ++T ++ E+MS+ SSS GG
Sbjct: 83760 VAPICYAHLAAAQMATAMKFEDMSETSSSHGG 83665
Score = 52.8 bits (109), Expect(6) = 3e-056
Identities = 17/34 (50%), Positives = 25/34 (73%)
Frame = +2 / -3
Query: 92 GTVVDSKVCHPKNFDFYMCAHAGMIGTTRPTHYH 193
GT++DS +CH N DFY+CAHAG I + + +Y+
Sbjct: 84220 GTIIDSNICHQHNNDFYLCAHAGKIVSDKYIYYY 84119
Score = 50.1 bits (103), Expect(6) = 3e-056
Identities = 20/34 (58%), Positives = 26/34 (76%)
Frame = +2 / -1
Query: 371 SSSQGGGHTSAGSAPVPELPRLHDKVRSSMFFC* 472
+SS GG T+AG+ PVP +P+L+ V SSMFFC*
Sbjct: 83685 TSSSHGGITTAGAVPVPPMPKLNTNVASSMFFC* 83584
Score = 23.1 bits (44), Expect(6) = 3e-056
Identities = 9/10 (90%), Positives = 10/10 (100%)
Frame = +2 / -3
Query: 263 YQRSTTAISV 292
YQRSTTAIS+
Sbjct: 83866 YQRSTTAISL 83837
>gb|AC069325.6|AC069325 Genomic Sequence For Arabidopsis thaliana Clone T10F18 From Chromosome
V, complete sequence
Length = 84413
Score = 71.2 bits (149), Expect(6) = 3e-056
Identities = 26/32 (81%), Positives = 30/32 (93%)
Frame = +2 / +3
Query: 167 GTTRPTHYHVLHDEIGFNADEMQEFVHSLSYV 262
GTTRPTHYHVL+DEIGF+ D++QE VHSLSYV
Sbjct: 69651 GTTRPTHYHVLYDEIGFDTDQLQELVHSLSYV 69746
Score = 69.8 bits (146), Expect(5) = 3e-051
Identities = 26/32 (81%), Positives = 29/32 (90%)
Frame = +2 / -2
Query: 167 GTTRPTHYHVLHDEIGFNADEMQEFVHSLSYV 262
GTTRPTHYHVL+DEIGF D++QE VHSLSYV
Sbjct: 12403 GTTRPTHYHVLYDEIGFATDDLQELVHSLSYV 12308
Score = 64.3 bits (134), Expect(5) = 3e-051
Identities = 24/32 (75%), Positives = 26/32 (81%)
Frame = +2 / -2
Query: 5 WSPKFTVIVAQKNXHTKFFQTASPDNVLPGTV 100
W PKFTVIVAQKN HTKFFQ+ PDNV PG +
Sbjct: 12742 WHPKFTVIVAQKNHHTKFFQSRGPDNVPPGKI 12647
Score = 62.5 bits (130), Expect(5) = 3e-051
Identities = 24/48 (50%), Positives = 34/48 (70%)
Frame = +2 / -3
Query: 245 HSLSYVYQRSTTAISVVAPVCYAHLAAAQVSTFLRLEEMSDASSSQGG 388
H + Y+ + + + VAPVCYAHLAAAQ+ T ++ EE+S+ SSS GG
Sbjct: 12132 HYVQYLNSQVSLCLFAVAPVCYAHLAAAQMGTVMKYEELSETSSSHGG 11989
Score = 62.5 bits (130), Expect(5) = 3e-051
Identities = 19/25 (76%), Positives = 25/25 (100%)
Frame = +2 / -3
Query: 92 GTVVDSKVCHPKNFDFYMCAHAGMI 166
GT++DS++CHP+NFDFY+CAHAGMI
Sbjct: 12570 GTIIDSQICHPRNFDFYLCAHAGMI 12496
Score = 58.8 bits (122), Expect(6) = 3e-056
Identities = 24/39 (61%), Positives = 28/39 (71%)
Frame = +2 / +2
Query: 2 KWSPKFTVIVAQKNXHTKFFQTASPDNVLPGTVVDSKVC 118
K PKFT+I+AQ N HTKFFQT SP+NVLPG + C
Sbjct: 69317 K*DPKFTLIIAQINHHTKFFQTESPNNVLPGKQLQIFFC 69433
Score = 57.0 bits (118), Expect(6) = 3e-056
Identities = 21/32 (65%), Positives = 28/32 (87%)
Frame = +2 / +3
Query: 293 VAPVCYAHLAAAQVSTFLRLEEMSDASSSQGG 388
VAP+CYAHLAAAQ++T ++ E+MS+ SSS GG
Sbjct: 69954 VAPICYAHLAAAQMATAMKFEDMSETSSSHGG 70049
Score = 52.8 bits (109), Expect(6) = 3e-056
Identities = 17/34 (50%), Positives = 25/34 (73%)
Frame = +2 / +2
Query: 92 GTVVDSKVCHPKNFDFYMCAHAGMIGTTRPTHYH 193
GT++DS +CH N DFY+CAHAG I + + +Y+
Sbjct: 69494 GTIIDSNICHQHNNDFYLCAHAGKIVSDKYIYYY 69595
Score = 50.1 bits (103), Expect(5) = 3e-051
Identities = 19/34 (55%), Positives = 26/34 (76%)
Frame = +2 / -3
Query: 371 SSSQGGGHTSAGSAPVPELPRLHDKVRSSMFFC* 472
+SS GG T+ G+ PVP +P+LH+ V +SMFFC*
Sbjct: 12009 TSSSHGGITTPGAVPVPPMPQLHNNVSTSMFFC* 11908
Score = 50.1 bits (103), Expect(6) = 3e-056
Identities = 20/34 (58%), Positives = 26/34 (76%)
Frame = +2 / +3
Query: 371 SSSQGGGHTSAGSAPVPELPRLHDKVRSSMFFC* 472
+SS GG T+AG+ PVP +P+L+ V SSMFFC*
Sbjct: 70029 TSSSHGGITTAGAVPVPPMPKLNTNVASSMFFC* 70130
Score = 23.1 bits (44), Expect(6) = 3e-056
Identities = 9/10 (90%), Positives = 10/10 (100%)
Frame = +2 / +2
Query: 263 YQRSTTAISV 292
YQRSTTAIS+
Sbjct: 69848 YQRSTTAISL 69877
>gb|AV524024.1|AV524024 AV524024 Arabidopsis thaliana aboveground organs two to six-week
old Arabidopsis thaliana cDNA clone APZL49a09F 3', mRNA
sequence
Length = 611
Score = 220 bits (475), Expect = 4e-056
Identities = 83/110 (75%), Positives = 99/110 (90%)
Frame = +2 / -2
Query: 59 FQTASPDNVLPGTVVDSKVCHPKNFDFYMCAHAGMIGTTRPTHYHVLHDEIGFNADEMQE 238
FQ SP+NV PGT++D+K+CHPK DFY+CAHAGMIGTTRPTHYHVL+DEIGF+ADE+QE
Sbjct: 610 FQPTSPENVPPGTIIDNKICHPKTNDFYLCAHAGMIGTTRPTHYHVLYDEIGFSADELQE 431
Query: 239 FVHSLSYVYQRSTTAISVVAPVCYAHLAAAQVSTFLRLEEMSDASSSQGG 388
VHSLSYVYQRST+AISVVAP+CYAHLAAAQ+ TF++ E+ S+ SSS GG
Sbjct: 430 LVHSLSYVYQRSTSAISVVAPICYAHLAAAQLGTFMKFEDQSETSSSHGG 281
Score = 134 bits (288), Expect(2) = 1e-034
Identities = 71/106 (66%), Positives = 76/106 (71%)
Frame = -1 / +3
Query: 387 PPWLEDASDISSNLRNVLTWAAARWA*HTGATTEMAVVLLWYT*ESE*TNSCISSALKPI 208
PPWL+D SD SSN NV + AAA+ A* GATTEMA+VLLWYT*ESE T+S SSA KPI
Sbjct: 282 PPWLDDVSD*SSNFMNVPS*AAAK*A*QIGATTEMALVLLWYT*ESEWTSS*SSSAEKPI 461
Query: 207 SSCRT**WVGLVVPIIPACAHM*KSKFLGWQTLLSTTVPGRTLSGD 70
SS RT * VG VVPIIPA A *KS G LLS VPG T SGD
Sbjct: 462 SSYRTW**VGRVVPIIPA*AQR*KSLVFG*HILLSMIVPGGTFSGD 599
Score = 34.5 bits (69), Expect(2) = 1e-034
Identities = 17/29 (58%), Positives = 17/29 (58%)
Frame = -1 / +3
Query: 471 *QKNMELLTLSCRRGSSGTGALPAEVCPP 385
*QKNMEL TLS GS T P V PP
Sbjct: 201 *QKNMELATLSLSLGSCATEIGPGAVIPP 287
>gb|AV523440.1|AV523440 AV523440 Arabidopsis thaliana aboveground organs two to six-week
old Arabidopsis thaliana cDNA clone APZL27f05F 3', mRNA
sequence
Length = 544
Score = 216 bits (467), Expect = 5e-055
Identities = 81/105 (77%), Positives = 97/105 (92%)
Frame = +2 / -3
Query: 74 PDNVLPGTVVDSKVCHPKNFDFYMCAHAGMIGTTRPTHYHVLHDEIGFNADEMQEFVHSL 253
P+NV PGT++D+K+CHPKN DFY+CAHAGMIGTTRPTHYHVL+DEIGF+ADE+QE VHSL
Sbjct: 542 PENVPPGTIIDNKICHPKNNDFYLCAHAGMIGTTRPTHYHVLYDEIGFSADELQELVHSL 363
Query: 254 SYVYQRSTTAISVVAPVCYAHLAAAQVSTFLRLEEMSDASSSQGG 388
SYVYQRST+AISVVAP+CYAHLAAAQ+ TF++ E+ S+ SSS GG
Sbjct: 362 SYVYQRSTSAISVVAPICYAHLAAAQLGTFMKFEDQSETSSSHGG 228
Score = 135 bits (289), Expect(2) = 7e-035
Identities = 71/105 (67%), Positives = 76/105 (72%)
Frame = -1 / +1
Query: 387 PPWLEDASDISSNLRNVLTWAAARWA*HTGATTEMAVVLLWYT*ESE*TNSCISSALKPI 208
PPWL+D SD SSN NV + AAA+ A* GATTEMA+VLLWYT*ESE T+S SSA KPI
Sbjct: 229 PPWLDDVSD*SSNFMNVPS*AAAK*A*QIGATTEMALVLLWYT*ESEWTSS*SSSAEKPI 408
Query: 207 SSCRT**WVGLVVPIIPACAHM*KSKFLGWQTLLSTTVPGRTLSG 73
SS RT * VG VVPIIPA A *KS F G LLS VPG T SG
Sbjct: 409 SSYRTW**VGRVVPIIPA*AQR*KSLFFG*HILLSMIVPGGTFSG 543
Score = 34.5 bits (69), Expect(2) = 7e-035
Identities = 17/29 (58%), Positives = 17/29 (58%)
Frame = -1 / +1
Query: 471 *QKNMELLTLSCRRGSSGTGALPAEVCPP 385
*QKNMEL TLS GS T P V PP
Sbjct: 148 *QKNMELATLSLSLGSCATEIGPGAVIPP 234
>gb|AC005623.3| Arabidopsis thaliana chromosome 2 clone T20P8 map B68, complete
sequence
Length = 99345
Score = 77.6 bits (163), Expect(5) = 8e-051
Identities = 29/33 (87%), Positives = 32/33 (96%)
Frame = +2 / -1
Query: 167 GTTRPTHYHVLHDEIGFNADEMQEFVHSLSYVY 265
GTTRPTHYHVL+DEIGF+ADE+QE VHSLSYVY
Sbjct: 36762 GTTRPTHYHVLYDEIGFSADELQELVHSLSYVY 36664
Score = 60.2 bits (125), Expect(5) = 8e-051
Identities = 19/25 (76%), Positives = 24/25 (96%)
Frame = +2 / -3
Query: 92 GTVVDSKVCHPKNFDFYMCAHAGMI 166
GT++D+K+CHPKN DFY+CAHAGMI
Sbjct: 36922 GTIIDNKICHPKNNDFYLCAHAGMI 36848
Score = 58.8 bits (122), Expect(5) = 8e-051
Identities = 21/30 (70%), Positives = 25/30 (83%)
Frame = +2 / -2
Query: 5 WSPKFTVIVAQKNXHTKFFQTASPDNVLPG 94
W+PKF ++VAQKN HTKFFQ SP+NV PG
Sbjct: 37088 WNPKFLLLVAQKNHHTKFFQPTSPENVPPG 36999
Score = 57.9 bits (120), Expect(5) = 8e-051
Identities = 21/32 (65%), Positives = 27/32 (84%)
Frame = +2 / -2
Query: 293 VAPVCYAHLAAAQVSTFLRLEEMSDASSSQGG 388
VAP+CYAHLAAAQ+ TF++ E+ S+ SSS GG
Sbjct: 36446 VAPICYAHLAAAQLGTFMKFEDQSETSSSHGG 36351
Score = 44.6 bits (91), Expect(6) = 4e-026
Identities = 20/34 (58%), Positives = 24/34 (70%)
Frame = -1 / +1
Query: 387 PPWLEDASDISSNLRNVLTWAAARWA*HTGATTE 286
PPWL+D SD SSN NV + AAA+ A* GAT +
Sbjct: 36352 PPWLDDVSD*SSNFMNVPS*AAAK*A*QIGATAQ 36453
Score = 41.4 bits (84), Expect(6) = 4e-026
Identities = 24/33 (72%), Positives = 25/33 (75%)
Frame = -1 / +2
Query: 264 YT*ESE*TNSCISSALKPISSCRT**WVGLVVP 166
YT*ESE T+S SSA KPISS RT * VG VVP
Sbjct: 36665 YT*ESEWTSS*SSSAEKPISSYRTW**VGRVVP 36763
Score = 34.5 bits (69), Expect(6) = 4e-026
Identities = 17/29 (58%), Positives = 17/29 (58%)
Frame = -1 / +1
Query: 471 *QKNMELLTLSCRRGSSGTGALPAEVCPP 385
*QKNMEL TLS GS T P V PP
Sbjct: 36271 *QKNMELATLSLSLGSCATEIGPGAVIPP 36357
Score = 33.1 bits (66), Expect(6) = 4e-026
Identities = 18/31 (58%), Positives = 18/31 (58%)
Frame = -1 / +1
Query: 93 PGRTLSGDAV*KNLVWXFF*ATITVNLGDHF 1
PG T SGD KNLV FF*AT N G F
Sbjct: 37000 PGGTFSGDVGWKNLV**FF*ATNKRNFGFQF 37092
Score = 28.6 bits (56), Expect(6) = 4e-026
Identities = 15/27 (55%), Positives = 16/27 (59%)
Frame = -1 / +3
Query: 165 IIPACAHM*KSKFLGWQTLLSTTVPGR 85
IIPA A *KS F G LLS VP +
Sbjct: 36849 IIPA*AQR*KSLFFG*HILLSMIVPAK 36929
Score = 25.8 bits (50), Expect(6) = 4e-026
Identities = 9/10 (90%), Positives = 10/10 (100%)
Frame = -1 / +1
Query: 291 TEMAVVLLWY 262
TEMA+VLLWY
Sbjct: 36538 TEMALVLLWY 36567
Score = 22.6 bits (43), Expect(5) = 8e-051
Identities = 9/10 (90%), Positives = 10/10 (100%)
Frame = +2 / -2
Query: 263 YQRSTTAISV 292
YQRST+AISV
Sbjct: 36566 YQRSTSAISV 36537
>gb|AC140977.1| Arabidopsis thaliana chromosome 5 BAC F13M11 genomic sequence, complete
sequence
Length = 112600
Score = 69.8 bits (146), Expect(5) = 8e-051
Identities = 26/32 (81%), Positives = 29/32 (90%)
Frame = +2 / -3
Query: 167 GTTRPTHYHVLHDEIGFNADEMQEFVHSLSYV 262
GTTRPTHYHVL+DEIGF D++QE VHSLSYV
Sbjct: 77318 GTTRPTHYHVLYDEIGFATDDLQELVHSLSYV 77223
Score = 64.3 bits (134), Expect(5) = 8e-051
Identities = 24/32 (75%), Positives = 26/32 (81%)
Frame = +2 / -3
Query: 5 WSPKFTVIVAQKNXHTKFFQTASPDNVLPGTV 100
W PKFTVIVAQKN HTKFFQ+ PDNV PG +
Sbjct: 77657 WHPKFTVIVAQKNHHTKFFQSRGPDNVPPGKI 77562
Score = 62.5 bits (130), Expect(5) = 8e-051
Identities = 24/48 (50%), Positives = 34/48 (70%)
Frame = +2 / -1
Query: 245 HSLSYVYQRSTTAISVVAPVCYAHLAAAQVSTFLRLEEMSDASSSQGG 388
H + Y+ + + + VAPVCYAHLAAAQ+ T ++ EE+S+ SSS GG
Sbjct: 77047 HYVQYLNSQVSLCLFAVAPVCYAHLAAAQMGTVMKYEELSETSSSHGG 76904
Score = 62.5 bits (130), Expect(5) = 8e-051
Identities = 19/25 (76%), Positives = 25/25 (100%)
Frame = +2 / -1
Query: 92 GTVVDSKVCHPKNFDFYMCAHAGMI 166
GT++DS++CHP+NFDFY+CAHAGMI
Sbjct: 77485 GTIIDSQICHPRNFDFYLCAHAGMI 77411
Score = 50.1 bits (103), Expect(5) = 8e-051
Identities = 19/34 (55%), Positives = 26/34 (76%)
Frame = +2 / -1
Query: 371 SSSQGGGHTSAGSAPVPELPRLHDKVRSSMFFC* 472
+SS GG T+ G+ PVP +P+LH+ V +SMFFC*
Sbjct: 76924 TSSSHGGITTPGAVPVPPMPQLHNNVSTSMFFC* 76823
>gb|AV523915.1|AV523915 AV523915 Arabidopsis thaliana aboveground organs two to six-week
old Arabidopsis thaliana cDNA clone APZL43g03F 3', mRNA
sequence
Length = 484
Score = 168 bits (361), Expect = 2e-040
Identities = 65/82 (79%), Positives = 76/82 (92%)
Frame = +2 / -1
Query: 143 MCAHAGMIGTTRPTHYHVLHDEIGFNADEMQEFVHSLSYVYQRSTTAISVVAPVCYAHLA 322
+CAHAGMIGTTRPTHYHVL+DEIGF+ADE+QE VHSLSYVYQRST+AISVVAP+CYAHLA
Sbjct: 484 LCAHAGMIGTTRPTHYHVLYDEIGFSADELQELVHSLSYVYQRSTSAISVVAPICYAHLA 305
Query: 323 AAQVSTFLRLEEMSDASSSQGG 388
AAQ+ TF++ E+ S+ SSS GG
Sbjct: 304 AAQLGTFMKFEDQSETSSSHGG 239
Score = 110 bits (235), Expect(2) = 2e-027
Identities = 56/78 (71%), Positives = 61/78 (78%)
Frame = -1 / +3
Query: 387 PPWLEDASDISSNLRNVLTWAAARWA*HTGATTEMAVVLLWYT*ESE*TNSCISSALKPI 208
PPWL+D SD SSN NV + AAA+ A* GATTEMA+VLLWYT*ESE T+S SSA KPI
Sbjct: 240 PPWLDDVSD*SSNFMNVPS*AAAK*A*QIGATTEMALVLLWYT*ESEWTSS*SSSAEKPI 419
Query: 207 SSCRT**WVGLVVPIIPA 154
SS RT * VG VVPIIPA
Sbjct: 420 SSYRTW**VGRVVPIIPA 473
Score = 34.5 bits (69), Expect(2) = 2e-027
Identities = 17/29 (58%), Positives = 17/29 (58%)
Frame = -1 / +3
Query: 471 *QKNMELLTLSCRRGSSGTGALPAEVCPP 385
*QKNMEL TLS GS T P V PP
Sbjct: 159 *QKNMELATLSLSLGSCATEIGPGAVIPP 245
>gb|BX836647.1|BX836647 BX836647 Arabidopsis thaliana Flowers and buds Col-0 Arabidopsis
thaliana cDNA clone GSLTFB75ZH02 3PRIM, mRNA sequence
Length = 922
Score = 161 bits (347), Expect(2) = 4e-039
Identities = 65/89 (73%), Positives = 75/89 (84%)
Frame = +2 / -3
Query: 122 PKNFDFYMCAHAGMIGTTRPTHYHVLHDEIGFNADEMQEFVHSLSYVYQRSTTAISVVAP 301
PK F HAGMIGTTRPTHYHVL+DEIG +ADE+QE VHSLSYVYQRST+AISVVAP
Sbjct: 557 PKEQ*FLPLCHAGMIGTTRPTHYHVLYDEIGLSADELQELVHSLSYVYQRSTSAISVVAP 378
Query: 302 VCYAHLAAAQVSTFLRLEEMSDASSSQGG 388
+CYAHLAAAQ+ TF++ E+ S+ SSS GG
Sbjct: 377 ICYAHLAAAQLGTFMKFEDQSETSSSHGG 291
Score = 109 bits (232), Expect(3) = 1e-035
Identities = 55/78 (70%), Positives = 61/78 (78%)
Frame = -1 / +1
Query: 387 PPWLEDASDISSNLRNVLTWAAARWA*HTGATTEMAVVLLWYT*ESE*TNSCISSALKPI 208
PPWL+D SD SSN NV + AAA+ A* GATTEMA+VLLWYT*ESE T+S SSA +PI
Sbjct: 292 PPWLDDVSD*SSNFMNVPS*AAAK*A*QIGATTEMALVLLWYT*ESEWTSS*SSSAERPI 471
Query: 207 SSCRT**WVGLVVPIIPA 154
SS RT * VG VVPIIPA
Sbjct: 472 SSYRTW**VGRVVPIIPA 525
Score = 94.1 bits (199), Expect(3) = 2e-030
Identities = 32/48 (66%), Positives = 41/48 (85%)
Frame = +2 / -1
Query: 5 WSPKFTVIVAQKNXHTKFFQTASPDNVLPGTVVDSKVCHPKNFDFYMC 148
W+PKF ++VAQKN HTKFFQ SP+NV PGT++D+K+ HPKN DFY+C
Sbjct: 673 WNPKFLLLVAQKNHHTKFFQPTSPENVPPGTIIDNKIFHPKNNDFYLC 530
Score = 46.4 bits (95), Expect(3) = 1e-035
Identities = 27/47 (57%), Positives = 27/47 (57%)
Frame = -1 / +3
Query: 141 *KSKFLGWQTLLSTTVPGRTLSGDAV*KNLVWXFF*ATITVNLGDHF 1
*KS F G LLS VPG T SGD KNLV FF*AT N G F
Sbjct: 537 *KSLFFG*NILLSMIVPGGTFSGDVGWKNLV**FF*ATNKRNFGFQF 677
Score = 45.1 bits (92), Expect(3) = 2e-030
Identities = 20/40 (50%), Positives = 25/40 (62%)
Frame = +2 / -3
Query: 356 EMSDASSSQGGGHTSAGSAPVPELPRLHDKVRSSMFFC*L 475
E +SS GG T+ G V +LPRL D V +SMFFC*+
Sbjct: 326 EDQSETSSSHGGITAPGPISVAQLPRLKDNVANSMFFC*M 207
Score = 34.5 bits (69), Expect(3) = 1e-035
Identities = 17/29 (58%), Positives = 17/29 (58%)
Frame = -1 / +1
Query: 471 *QKNMELLTLSCRRGSSGTGALPAEVCPP 385
*QKNMEL TLS GS T P V PP
Sbjct: 211 *QKNMELATLSLSLGSCATEIGPGAVIPP 297
Score = 33.6 bits (67), Expect(3) = 2e-030
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +1 / -2
Query: 226 RDAGVCSFALLRVPEEHDSHLSGCSSVL 309
R +G C ALL VP++H H C+ +L
Sbjct: 453 RTSGTCPLALLCVPKKHQCHFCCCADLL 370
Score = 22.1 bits (42), Expect(2) = 4e-039
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = +1 / -3
Query: 34 SKEPPHQVLSDGITRQCSS 90
SKE +QVL ++ +CSS
Sbjct: 644 SKESSYQVLPANVS*KCSS 588
>gb|AV556836.1|AV556836 AV556836 Arabidopsis thaliana green siliques Columbia Arabidopsis
thaliana cDNA clone SQ053e11F 3', mRNA sequence
Length = 551
Score = 149 bits (320), Expect = 9e-035
Identities = 59/132 (44%), Positives = 83/132 (62%)
Frame = +2 / -2
Query: 77 DNVLPGTVVDSKVCHPKNFDFYMCAHAGMIGTTRPTHYHVLHDEIGFNADEMQEFVHSLS 256
+N+ PGTVVD+ + HPK FDFY+C+H G+ GT+RPTHYH+L DE F +DE+Q V++L
Sbjct: 433 ENIPPGTVVDTVITHPKEFDFYLCSHLGVKGTSRPTHYHILWDENEFTSDELQRLVYNLC 254
Query: 257 YVYQRSTTAISVVAPVCYAHLAAAQVSTFLRLEEMSDASSSQGGGHTSAGSAPVPELPRL 436
Y + R T IS+V P YAHLAA + ++ S+ S + G LP+L
Sbjct: 253 YTFVRCTKPISIVPPAYYAHLAAYRGRLYIERSSESNGGSMNPSSVSRVGPPKTIPLPKL 74
Query: 437 HDKVRSSMFFC* 472
D V++ MF+C*
Sbjct: 73 SDNVKNLMFYC* 38
>gb|AY394564.1| Arabidopsis thaliana ZIPPY mRNA, complete cds
Length = 3161
Score = 149 bits (320), Expect = 9e-035
Identities = 59/132 (44%), Positives = 83/132 (62%)
Frame = +2 / +1
Query: 77 DNVLPGTVVDSKVCHPKNFDFYMCAHAGMIGTTRPTHYHVLHDEIGFNADEMQEFVHSLS 256
+N+ PGTVVD+ + HPK FDFY+C+H G+ GT+RPTHYH+L DE F +DE+Q V++L
Sbjct: 2728 ENIPPGTVVDTVITHPKEFDFYLCSHLGVKGTSRPTHYHILWDENEFTSDELQRLVYNLC 2907
Query: 257 YVYQRSTTAISVVAPVCYAHLAAAQVSTFLRLEEMSDASSSQGGGHTSAGSAPVPELPRL 436
Y + R T IS+V P YAHLAA + ++ S+ S + G LP+L
Sbjct: 2908 YTFVRCTKPISIVPPAYYAHLAAYRGRLYIERSSESNGGSMNPSSVSRVGPPKTIPLPKL 3087
Query: 437 HDKVRSSMFFC* 472
D V++ MF+C*
Sbjct: 3088 SDNVKNLMFYC* 3123
>gb|AC073178.9|AC073178 Arabidopsis thaliana chromosome 1 BAC F10D13 genomic sequence, complete
sequence
Length = 107214
Score = 149 bits (320), Expect = 9e-035
Identities = 59/132 (44%), Positives = 83/132 (62%)
Frame = +2 / -2
Query: 77 DNVLPGTVVDSKVCHPKNFDFYMCAHAGMIGTTRPTHYHVLHDEIGFNADEMQEFVHSLS 256
+N+ PGTVVD+ + HPK FDFY+C+H G+ GT+RPTHYH+L DE F +DE+Q V++L
Sbjct: 45281 ENIPPGTVVDTVITHPKEFDFYLCSHLGVKGTSRPTHYHILWDENEFTSDELQRLVYNLC 45102
Query: 257 YVYQRSTTAISVVAPVCYAHLAAAQVSTFLRLEEMSDASSSQGGGHTSAGSAPVPELPRL 436
Y + R T IS+V P YAHLAA + ++ S+ S + G LP+L
Sbjct: 45101 YTFVRCTKPISIVPPAYYAHLAAYRGRLYIERSSESNGGSMNPSSVSRVGPPKTIPLPKL 44922
Query: 437 HDKVRSSMFFC* 472
D V++ MF+C*
Sbjct: 44921 SDNVKNLMFYC* 44886
>gb|AE005173.1| Arabidopsis thaliana chromosome 1, bottom arm complete sequence
Length = 14668883
Score = 149 bits (320), Expect = 9e-035
Identities = 59/132 (44%), Positives = 83/132 (62%)
Frame = +2 / -3
Query: 77 DNVLPGTVVDSKVCHPKNFDFYMCAHAGMIGTTRPTHYHVLHDEIGFNADEMQEFVHSLS 256
+N+ PGTVVD+ + HPK FDFY+C+H G+ GT+RPTHYH+L DE F +DE+Q V++L
Sbjct: 10344156 ENIPPGTVVDTVITHPKEFDFYLCSHLGVKGTSRPTHYHILWDENEFTSDELQRLVYNLC 10343977
Query: 257 YVYQRSTTAISVVAPVCYAHLAAAQVSTFLRLEEMSDASSSQGGGHTSAGSAPVPELPRL 436
Y + R T IS+V P YAHLAA + ++ S+ S + G LP+L
Sbjct: 10343976 YTFVRCTKPISIVPPAYYAHLAAYRGRLYIERSSESNGGSMNPSSVSRVGPPKTIPLPKL 10343797
Query: 437 HDKVRSSMFFC* 472
D V++ MF+C*
Sbjct: 10343796 SDNVKNLMFYC* 10343761
>ref|NM_105611.3| Arabidopsis thaliana AGO7 (ARGONAUTE7) AT1G69440 (AGO7) mRNA,
complete cds
Length = 3163
Score = 149 bits (320), Expect = 9e-035
Identities = 59/132 (44%), Positives = 83/132 (62%)
Frame = +2 / +1
Query: 77 DNVLPGTVVDSKVCHPKNFDFYMCAHAGMIGTTRPTHYHVLHDEIGFNADEMQEFVHSLS 256
+N+ PGTVVD+ + HPK FDFY+C+H G+ GT+RPTHYH+L DE F +DE+Q V++L
Sbjct: 2728 ENIPPGTVVDTVITHPKEFDFYLCSHLGVKGTSRPTHYHILWDENEFTSDELQRLVYNLC 2907
Query: 257 YVYQRSTTAISVVAPVCYAHLAAAQVSTFLRLEEMSDASSSQGGGHTSAGSAPVPELPRL 436
Y + R T IS+V P YAHLAA + ++ S+ S + G LP+L
Sbjct: 2908 YTFVRCTKPISIVPPAYYAHLAAYRGRLYIERSSESNGGSMNPSSVSRVGPPKTIPLPKL 3087
Query: 437 HDKVRSSMFFC* 472
D V++ MF+C*
Sbjct: 3088 SDNVKNLMFYC* 3123
>ref|NC_003070.5| Arabidopsis thaliana chromosome 1, complete sequence
Length = 30432563
Score = 149 bits (320), Expect = 9e-035
Identities = 59/132 (44%), Positives = 83/132 (62%)
Frame = +2 / -2
Query: 77 DNVLPGTVVDSKVCHPKNFDFYMCAHAGMIGTTRPTHYHVLHDEIGFNADEMQEFVHSLS 256
+N+ PGTVVD+ + HPK FDFY+C+H G+ GT+RPTHYH+L DE F +DE+Q V++L
Sbjct: 26105623 ENIPPGTVVDTVITHPKEFDFYLCSHLGVKGTSRPTHYHILWDENEFTSDELQRLVYNLC 26105444
Query: 257 YVYQRSTTAISVVAPVCYAHLAAAQVSTFLRLEEMSDASSSQGGGHTSAGSAPVPELPRL 436
Y + R T IS+V P YAHLAA + ++ S+ S + G LP+L
Sbjct: 26105443 YTFVRCTKPISIVPPAYYAHLAAYRGRLYIERSSESNGGSMNPSSVSRVGPPKTIPLPKL 26105264
Query: 437 HDKVRSSMFFC* 472
D V++ MF+C*
Sbjct: 26105263 SDNVKNLMFYC* 26105228
Score = 115 bits (246), Expect = 1e-024
Identities = 45/110 (40%), Positives = 69/110 (62%)
Frame = +2 / +1
Query: 80 NVLPGTVVDSKVCHPKNFDFYMCAHAGMIGTTRPTHYHVLHDEIGFNADEMQEFVHSLSY 259
NV GTVVD+ + HP +DFY+C+ G IGT++PTHY+VL DEIGFN++++Q+ + L +
Sbjct: 11191879 NVPSGTVVDTTIIHPFEYDFYLCSQHGAIGTSKPTHYYVLSDEIGFNSNQIQKLIFDLCF 11192058
Query: 260 VYQRSTTAISVVAPVCYAHLAAAQVSTFLRLEEMSDASSSQGGGHTSAGS 409
+ R T +++V PV YA AA++ + M S G +S+ S
Sbjct: 11192059 TFTRCTKPVALVPPVSYADKAASRGRVYYEASLMKKNSKQSRGASSSSAS 11192208
Score = 111 bits (237), Expect = 3e-023
Identities = 40/82 (48%), Positives = 59/82 (71%)
Frame = +2 / +2
Query: 80 NVLPGTVVDSKVCHPKNFDFYMCAHAGMIGTTRPTHYHVLHDEIGFNADEMQEFVHSLSY 259
NV GTVVD+KV HP +DFY+C+H G IGT++PTHY+ L DE+GF +D++Q+ + + +
Sbjct: 11184674 NVPSGTVVDTKVIHPYEYDFYLCSHHGGIGTSKPTHYYTLWDELGFTSDQVQKLIFEMCF 11184853
Query: 260 VYQRSTTAISVVAPVCYAHLAA 325
+ R T +S+V PV YA + A
Sbjct: 11184854 TFTRCTKPVSLVPPVYYADMVA 11184919
>gb|CB260762.1|CB260762 67-E009520-012-003-F21-T7R MPIZ-ADIS-012 Arabidopsis thaliana cDNA
clone MPIZp769F213Q 5-PRIME, mRNA sequence
Length = 532
Score = 143 bits (307), Expect = 6e-033
Identities = 57/112 (50%), Positives = 72/112 (64%)
Frame = +2 / +3
Query: 41 NXHTKFFQTASPDNVLPGTVVDSKVCHPKNFDFYMCAHAGMIGTTRPTHYHVLHDEIGFN 220
N H T N+LPGTVVD+K+CHP FDFY+C+HAG+ GT+RP HYHVL DE F
Sbjct: 144 NNHRDKNSTHRSGNILPGTVVDTKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENNFT 323
Query: 221 ADEMQEFVHSLSYVYQRSTTAISVVAPVCYAHLAAAQVSTFLRLEEMSDASS 376
AD +Q ++L Y Y R T ++S+V P YAHLAA + +L E M D S
Sbjct: 324 ADGIQSLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFYLEPEIMQDNGS 479
>emb|AJ223508.1|ART223508 Arabidopsis thaliana mRNA for Zwille protein
Length = 3323
Score = 143 bits (307), Expect = 6e-033
Identities = 57/112 (50%), Positives = 72/112 (64%)
Frame = +2 / +3
Query: 41 NXHTKFFQTASPDNVLPGTVVDSKVCHPKNFDFYMCAHAGMIGTTRPTHYHVLHDEIGFN 220
N H T N+LPGTVVD+K+CHP FDFY+C+HAG+ GT+RP HYHVL DE F
Sbjct: 2658 NNHRDKNSTDRSGNILPGTVVDTKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENNFT 2837
Query: 221 ADEMQEFVHSLSYVYQRSTTAISVVAPVCYAHLAAAQVSTFLRLEEMSDASS 376
AD +Q ++L Y Y R T ++S+V P YAHLAA + +L E M D S
Sbjct: 2838 ADGIQSLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFYLEPEIMQDNGS 2993
>emb|AX505737.1| Sequence 432 from Patent WO0216655
Length = 2967
Score = 143 bits (307), Expect = 6e-033
Identities = 57/112 (50%), Positives = 72/112 (64%)
Frame = +2 / +1
Query: 41 NXHTKFFQTASPDNVLPGTVVDSKVCHPKNFDFYMCAHAGMIGTTRPTHYHVLHDEIGFN 220
N H T N+LPGTVVD+K+CHP FDFY+C+HAG+ GT+RP HYHVL DE F
Sbjct: 2530 NNHRDKNSTDRSGNILPGTVVDTKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENNFT 2709
Query: 221 ADEMQEFVHSLSYVYQRSTTAISVVAPVCYAHLAAAQVSTFLRLEEMSDASS 376
AD +Q ++L Y Y R T ++S+V P YAHLAA + +L E M D S
Sbjct: 2710 ADGIQSLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFYLEPEIMQDNGS 2865
>ref|NM_123748.2| Arabidopsis thaliana ZLL (ZWILLE) AT5G43810 (ZLL) mRNA, complete cds
Length = 3330
Score = 143 bits (307), Expect = 6e-033
Identities = 57/112 (50%), Positives = 72/112 (64%)
Frame = +2 / +3
Query: 41 NXHTKFFQTASPDNVLPGTVVDSKVCHPKNFDFYMCAHAGMIGTTRPTHYHVLHDEIGFN 220
N H T N+LPGTVVD+K+CHP FDFY+C+HAG+ GT+RP HYHVL DE F
Sbjct: 2658 NNHRDKNSTDRSGNILPGTVVDTKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENNFT 2837
Query: 221 ADEMQEFVHSLSYVYQRSTTAISVVAPVCYAHLAAAQVSTFLRLEEMSDASS 376
AD +Q ++L Y Y R T ++S+V P YAHLAA + +L E M D S
Sbjct: 2838 ADGIQSLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFYLEPEIMQDNGS 2993
>emb|BX815116.1|CNS0AAU5 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTLS34ZG07 of Adult vegetative tissue of strain col-0
of Arabidopsis thaliana (thale cress)
Length = 3188
Score = 143 bits (306), Expect = 8e-033
Identities = 55/111 (49%), Positives = 71/111 (63%)
Frame = +2 / +3
Query: 80 NVLPGTVVDSKVCHPKNFDFYMCAHAGMIGTTRPTHYHVLHDEIGFNADEMQEFVHSLSY 259
N+LPGTVVDSK+CHP FDFY+C+HAG+ GT+RP HYHVL DE F AD +Q ++L Y
Sbjct: 2598 NILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENNFTADGLQSLTNNLCY 2777
Query: 260 VYQRSTTAISVVAPVCYAHLAAAQVSTFLRLEEMSDASSSQGGGHTSAGSA 412
Y R T ++S+V P YAHLAA + ++ E S + G G A
Sbjct: 2778 TYARCTRSVSIVPPAYYAHLAALRARFYMEPETSDSGSMASGSMARGGGMA 2930
>gb|AV441187.1|AV441187 AV441187 Arabidopsis thaliana above-ground organ two to six-week
old Arabidopsis thaliana cDNA clone APZ31g03_f 3', mRNA
sequence
Length = 607
Score = 142 bits (305), Expect = 1e-032
Identities = 55/111 (49%), Positives = 71/111 (63%)
Frame = +2 / -2
Query: 80 NVLPGTVVDSKVCHPKNFDFYMCAHAGMIGTTRPTHYHVLHDEIGFNADEMQEFVHSLSY 259
N+LPGTVVDSK+CHP FDFY+C+HAG+ GT+RP HYHVL DE F AD +Q ++L Y
Sbjct: 543 NILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENNFTADGLQSLTNNLCY 364
Query: 260 VYQRSTTAISVVAPVCYAHLAAAQVSTFLRLEEMSDASSSQGGGHTSAGSA 412
Y R T ++S+V P YAHLAA + ++ E S + G G A
Sbjct: 363 TYARCTRSVSIVPPAYYAHLAAFRARFYMEPETSDSGSMASGSMARGGGMA 211
>gb|AV545970.1|AV545970 AV545970 Arabidopsis thaliana roots Columbia Arabidopsis thaliana
cDNA clone RZL06e02F 3', mRNA sequence
Length = 575
Score = 142 bits (305), Expect = 1e-032
Identities = 55/111 (49%), Positives = 71/111 (63%)
Frame = +2 / -1
Query: 80 NVLPGTVVDSKVCHPKNFDFYMCAHAGMIGTTRPTHYHVLHDEIGFNADEMQEFVHSLSY 259
N+LPGTVVDSK+CHP FDFY+C+HAG+ GT+RP HYHVL DE F AD +Q ++L Y
Sbjct: 554 NILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENNFTADGLQSLTNNLCY 375
Query: 260 VYQRSTTAISVVAPVCYAHLAAAQVSTFLRLEEMSDASSSQGGGHTSAGSA 412
Y R T ++S+V P YAHLAA + ++ E S + G G A
Sbjct: 374 TYARCTRSVSIVPPAYYAHLAAFRARFYMEPETSDSGSMASGSMARGGGMA 222
>gb|AV563657.1|AV563657 AV563657 Arabidopsis thaliana green siliques Columbia Arabidopsis
thaliana cDNA clone SQ191b06F 3', mRNA sequence
Length = 601
Score = 142 bits (305), Expect = 1e-032
Identities = 55/111 (49%), Positives = 71/111 (63%)
Frame = +2 / -3
Query: 80 NVLPGTVVDSKVCHPKNFDFYMCAHAGMIGTTRPTHYHVLHDEIGFNADEMQEFVHSLSY 259
N+LPGTVVDSK+CHP FDFY+C+HAG+ GT+RP HYHVL DE F AD +Q ++L Y
Sbjct: 554 NILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENNFTADGLQSLTNNLCY 375
Query: 260 VYQRSTTAISVVAPVCYAHLAAAQVSTFLRLEEMSDASSSQGGGHTSAGSA 412
Y R T ++S+V P YAHLAA + ++ E S + G G A
Sbjct: 374 TYARCTRSVSIVPPAYYAHLAAFRARFYMEPETSDSGSMASGSMARGGGMA 222
>gb|CK119358.1|CK119358 212p13.p1 AtM1 Arabidopsis thaliana cDNA clone MPMGp2011P13212
5-PRIME, mRNA sequence
Length = 775
Score = 142 bits (305), Expect = 1e-032
Identities = 55/111 (49%), Positives = 71/111 (63%)
Frame = +2 / +3
Query: 80 NVLPGTVVDSKVCHPKNFDFYMCAHAGMIGTTRPTHYHVLHDEIGFNADEMQEFVHSLSY 259
N+LPGTVVDSK+CHP FDFY+C+HAG+ GT+RP HYHVL DE F AD +Q ++L Y
Sbjct: 204 NILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENNFTADGLQSLTNNLCY 383
Query: 260 VYQRSTTAISVVAPVCYAHLAAAQVSTFLRLEEMSDASSSQGGGHTSAGSA 412
Y R T ++S+V P YAHLAA + ++ E S + G G A
Sbjct: 384 TYARCTRSVSIVPPAYYAHLAAFRARFYMEPETSDSGSMASGSMARGGGMA 536
>gb|U91995.1|ATU91995 Arabidopsis thaliana Argonaute protein (AGO1) mRNA, complete cds
Length = 3473
Score = 142 bits (305), Expect = 1e-032
Identities = 55/111 (49%), Positives = 71/111 (63%)
Frame = +2 / +1
Query: 80 NVLPGTVVDSKVCHPKNFDFYMCAHAGMIGTTRPTHYHVLHDEIGFNADEMQEFVHSLSY 259
N+LPGTVVDSK+CHP FDFY+C+HAG+ GT+RP HYHVL DE F AD +Q ++L Y
Sbjct: 2848 NILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENNFTADGLQSLTNNLCY 3027
Query: 260 VYQRSTTAISVVAPVCYAHLAAAQVSTFLRLEEMSDASSSQGGGHTSAGSA 412
Y R T ++S+V P YAHLAA + ++ E S + G G A
Sbjct: 3028 TYARCTRSVSIVPPAYYAHLAAFRARFYMEPETSDSGSMASGSMARGGGMA 3180
>gb|AY080690.1| Arabidopsis thaliana At1g48410 mRNA sequence
Length = 2764
Score = 142 bits (305), Expect = 1e-032
Identities = 55/111 (49%), Positives = 71/111 (63%)
Frame = +2 / +2
Query: 80 NVLPGTVVDSKVCHPKNFDFYMCAHAGMIGTTRPTHYHVLHDEIGFNADEMQEFVHSLSY 259
N+LPGTVVDSK+CHP FDFY+C+HAG+ GT+RP HYHVL DE F AD +Q ++L Y
Sbjct: 2120 NILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENNFTADGLQSLTNNLCY 2299
Query: 260 VYQRSTTAISVVAPVCYAHLAAAQVSTFLRLEEMSDASSSQGGGHTSAGSA 412
Y R T ++S+V P YAHLAA + ++ E S + G G A
Sbjct: 2300 TYARCTRSVSIVPPAYYAHLAAFRARFYMEPETSDSGSMASGSMARGGGMA 2452
>gb|BT000941.1| Arabidopsis thaliana clone C105223 putative leaf development protein
Argonaute (At1g48410) mRNA, complete cds
Length = 3177
Score = 142 bits (305), Expect = 1e-032
Identities = 55/111 (49%), Positives = 71/111 (63%)
Frame = +2 / +1
Query: 80 NVLPGTVVDSKVCHPKNFDFYMCAHAGMIGTTRPTHYHVLHDEIGFNADEMQEFVHSLSY 259
N+LPGTVVDSK+CHP FDFY+C+HAG+ GT+RP HYHVL DE F AD +Q ++L Y
Sbjct: 2722 NILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENNFTADGLQSLTNNLCY 2901
Query: 260 VYQRSTTAISVVAPVCYAHLAAAQVSTFLRLEEMSDASSSQGGGHTSAGSA 412
Y R T ++S+V P YAHLAA + ++ E S + G G A
Sbjct: 2902 TYARCTRSVSIVPPAYYAHLAAFRARFYMEPETSDSGSMASGSMARGGGMA 3054
>emb|BX818680.1|CNS0ACI7 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTSIL91ZD02 of Silique of strain col-0 of Arabidopsis
thaliana (thale cress)
Length = 728
Score = 142 bits (305), Expect = 1e-032
Identities = 55/111 (49%), Positives = 71/111 (63%)
Frame = +2 / +1
Query: 80 NVLPGTVVDSKVCHPKNFDFYMCAHAGMIGTTRPTHYHVLHDEIGFNADEMQEFVHSLSY 259
N+LPGTVVDSK+CHP FDFY+C+HAG+ GT+RP HYHVL DE F AD +Q ++L Y
Sbjct: 127 NILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENNFTADGLQSLTNNLCY 306
Query: 260 VYQRSTTAISVVAPVCYAHLAAAQVSTFLRLEEMSDASSSQGGGHTSAGSA 412
Y R T ++S+V P YAHLAA + ++ E S + G G A
Sbjct: 307 TYARCTRSVSIVPPAYYAHLAAFRARFYMEPETSDSGSMASGSMARGGGMA 459
>ref|NM_103737.2| Arabidopsis thaliana AGO1 (ARGONAUTE 1) AT1G48410 (AGO1) transcript
variant AT1G48410.1 mRNA, complete cds
Length = 3483
Score = 142 bits (305), Expect = 1e-032
Identities = 55/111 (49%), Positives = 71/111 (63%)
Frame = +2 / +3
Query: 80 NVLPGTVVDSKVCHPKNFDFYMCAHAGMIGTTRPTHYHVLHDEIGFNADEMQEFVHSLSY 259
N+LPGTVVDSK+CHP FDFY+C+HAG+ GT+RP HYHVL DE F AD +Q ++L Y
Sbjct: 2871 NILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENNFTADGLQSLTNNLCY 3050
Query: 260 VYQRSTTAISVVAPVCYAHLAAAQVSTFLRLEEMSDASSSQGGGHTSAGSA 412
Y R T ++S+V P YAHLAA + ++ E S + G G A
Sbjct: 3051 TYARCTRSVSIVPPAYYAHLAAFRARFYMEPETSDSGSMASGSMARGGGMA 3203
>ref|NM_179453.1| Arabidopsis thaliana AGO1 (ARGONAUTE 1) AT1G48410 (AGO1) transcript
variant AT1G48410.2 mRNA, complete cds
Length = 3489
Score = 142 bits (305), Expect = 1e-032
Identities = 55/111 (49%), Positives = 71/111 (63%)
Frame = +2 / +3
Query: 80 NVLPGTVVDSKVCHPKNFDFYMCAHAGMIGTTRPTHYHVLHDEIGFNADEMQEFVHSLSY 259
N+LPGTVVDSK+CHP FDFY+C+HAG+ GT+RP HYHVL DE F AD +Q ++L Y
Sbjct: 2877 NILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENNFTADGLQSLTNNLCY 3056
Query: 260 VYQRSTTAISVVAPVCYAHLAAAQVSTFLRLEEMSDASSSQGGGHTSAGSA 412
Y R T ++S+V P YAHLAA + ++ E S + G G A
Sbjct: 3057 TYARCTRSVSIVPPAYYAHLAAFRARFYMEPETSDSGSMASGSMARGGGMA 3209
>emb|BX943872.1| Arabidopsis thaliana T-DNA flanking sequence GK-693B05-025068,
genomic survey sequence
Length = 551
Score = 71.2 bits (149), Expect(4) = 2e-032
Identities = 26/32 (81%), Positives = 30/32 (93%)
Frame = +2 / +1
Query: 167 GTTRPTHYHVLHDEIGFNADEMQEFVHSLSYV 262
GTTRPTHYHVL+DEIGF+ D++QE VHSLSYV
Sbjct: 76 GTTRPTHYHVLYDEIGFDTDQLQELVHSLSYV 171
Score = 57.0 bits (118), Expect(4) = 2e-032
Identities = 21/32 (65%), Positives = 28/32 (87%)
Frame = +2 / +1
Query: 293 VAPVCYAHLAAAQVSTFLRLEEMSDASSSQGG 388
VAP+CYAHLAAAQ++T ++ E+MS+ SSS GG
Sbjct: 379 VAPICYAHLAAAQMATAMKFEDMSETSSSHGG 474
Score = 45.5 bits (93), Expect(4) = 2e-032
Identities = 18/32 (56%), Positives = 24/32 (75%)
Frame = +2 / +1
Query: 371 SSSQGGGHTSAGSAPVPELPRLHDKVRSSMFF 466
+SS GG T+AG+ PVP +P+L+ V SSMFF
Sbjct: 454 TSSSHGGITTAGAVPVPPMPKLNTNVASSMFF 549
Score = 23.1 bits (44), Expect(4) = 2e-032
Identities = 9/10 (90%), Positives = 10/10 (100%)
Frame = +2 / +3
Query: 263 YQRSTTAISV 292
YQRSTTAIS+
Sbjct: 273 YQRSTTAISL 302
>gb|AV523806.1|AV523806 AV523806 Arabidopsis thaliana aboveground organs two to six-week
old Arabidopsis thaliana cDNA clone APZL40f03F 3', mRNA
sequence
Length = 447
Score = 137 bits (294), Expect = 4e-031
Identities = 54/111 (48%), Positives = 70/111 (63%)
Frame = +2 / -1
Query: 80 NVLPGTVVDSKVCHPKNFDFYMCAHAGMIGTTRPTHYHVLHDEIGFNADEMQEFVHSLSY 259
N+LPGTVVDSK+CH FDFY+C+HAG+ GT+RP HYHVL DE F AD +Q ++L Y
Sbjct: 360 NILPGTVVDSKICHRTEFDFYLCSHAGIQGTSRPAHYHVLWDENNFTADGLQSLTNNLCY 181
Query: 260 VYQRSTTAISVVAPVCYAHLAAAQVSTFLRLEEMSDASSSQGGGHTSAGSA 412
Y R T ++S+V P YAHLAA + ++ E S + G G A
Sbjct: 180 TYARCTRSVSIVPPAYYAHLAAFRARFYMEPETSDSGSMASGSMARVGGMA 28
>emb|BX821460.1|CNS0A8DH Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTSIL43ZD04 of Silique of strain col-0 of Arabidopsis
thaliana (thale cress)
Length = 1092
Score = 137 bits (293), Expect = 5e-031
Identities = 54/114 (47%), Positives = 71/114 (62%)
Frame = +2 / +2
Query: 65 TASPDNVLPGTVVDSKVCHPKNFDFYMCAHAGMIGTTRPTHYHVLHDEIGFNADEMQEFV 244
T N+ PGTVVD+K+CHP FDFY+ +HAG+ GT+RP HYHVL DE GF AD++Q
Sbjct: 506 TDKSGNIQPGTVVDTKICHPNEFDFYLNSHAGIQGTSRPAHYHVLLDENGFTADQLQMLT 685
Query: 245 HSLSYVYQRSTTAISVVAPVCYAHLAAAQVSTFLRLEEMSDASSSQGGGHTSAG 406
++L Y Y R T ++S+V P YAHLAA + ++ E SS T G
Sbjct: 686 NNLCYTYARCTKSVSIVPPAYYAHLAAFRARYYMESEMSDGGSSRSRSSTTGVG 847
>ref|NM_179779.1| Arabidopsis thaliana unknown protein AT2G27880 mRNA, complete cds
Length = 2994
Score = 137 bits (293), Expect = 5e-031
Identities = 54/114 (47%), Positives = 71/114 (62%)
Frame = +2 / +1
Query: 65 TASPDNVLPGTVVDSKVCHPKNFDFYMCAHAGMIGTTRPTHYHVLHDEIGFNADEMQEFV 244
T N+ PGTVVD+K+CHP FDFY+ +HAG+ GT+RP HYHVL DE GF AD++Q
Sbjct: 2590 TDKSGNIQPGTVVDTKICHPNEFDFYLNSHAGIQGTSRPAHYHVLLDENGFTADQLQMLT 2769
Query: 245 HSLSYVYQRSTTAISVVAPVCYAHLAAAQVSTFLRLEEMSDASSSQGGGHTSAG 406
++L Y Y R T ++S+V P YAHLAA + ++ E SS T G
Sbjct: 2770 NNLCYTYARCTKSVSIVPPAYYAHLAAFRARYYMESEMSDGGSSRSRSSTTGVG 2931
>gb|AC003033.3| Arabidopsis thaliana chromosome 2 BAC T21L14 genomic sequence, complete
sequence
Length = 96801
Score = 65.2 bits (136), Expect(3) = 3e-030
Identities = 25/41 (60%), Positives = 32/41 (78%)
Frame = +2 / +2
Query: 167 GTTRPTHYHVLHDEIGFNADEMQEFVHSLSYVYQRSTTAIS 289
GT+RP HYHVL DEIGF+ D++Q +HSLSYV S T+I+
Sbjct: 50789 GTSRPAHYHVLLDEIGFSPDDLQNLIHSLSYV*VHSLTSIT 50911
Score = 56.5 bits (117), Expect(3) = 3e-030
Identities = 20/27 (74%), Positives = 23/27 (85%)
Frame = +2 / +1
Query: 86 LPGTVVDSKVCHPKNFDFYMCAHAGMI 166
L GTVVD+K+ HP N+DFYMCAHAG I
Sbjct: 50623 LSGTVVDTKIVHPTNYDFYMCAHAGKI 50703
Score = 50.1 bits (103), Expect(3) = 3e-030
Identities = 20/28 (71%), Positives = 21/28 (75%)
Frame = +2 / +3
Query: 11 PKFTVIVAQKNXHTKFFQTASPDNVLPG 94
PKFTVIVAQKN HTK FQ P+NV G
Sbjct: 50457 PKFTVIVAQKNHHTKLFQAKGPENVPAG 50540
>gb|BX838222.1|BX838222 BX838222 Arabidopsis thaliana Silique Col-0 Arabidopsis thaliana
cDNA clone GSLTSIL68ZF03 5PRIM, mRNA sequence
Length = 616
Score = 131 bits (281), Expect = 2e-029
Identities = 52/107 (48%), Positives = 68/107 (63%)
Frame = +2 / +1
Query: 86 LPGTVVDSKVCHPKNFDFYMCAHAGMIGTTRPTHYHVLHDEIGFNADEMQEFVHSLSYVY 265
L GTVVD+K+CHP FDFY+ +HAG+ GT+RP HYHVL DE GF AD++Q ++L Y Y
Sbjct: 16 LSGTVVDTKICHPNEFDFYLNSHAGIQGTSRPAHYHVLLDENGFTADQLQMLTNNLCYTY 195
Query: 266 QRSTTAISVVAPVCYAHLAAAQVSTFLRLEEMSDASSSQGGGHTSAG 406
R T ++S+V P YAHLAA + ++ E SS T G
Sbjct: 196 ARCTKSVSIVPPAYYAHLAAFRARYYMESEMSDGGSSRSRSSTTGVG 336
>gb|AV523023.1|AV523023 AV523023 Arabidopsis thaliana aboveground organs two to six-week
old Arabidopsis thaliana cDNA clone APZL13c04F 3', mRNA
sequence
Length = 462
Score = 127 bits (271), Expect = 5e-028
Identities = 50/66 (75%), Positives = 60/66 (90%)
Frame = +2 / -3
Query: 191 HVLHDEIGFNADEMQEFVHSLSYVYQRSTTAISVVAPVCYAHLAAAQVSTFLRLEEMSDA 370
HVL+DEIGF+ADE+QE VHSLSYVYQRST+AISVVAP+CYAHLAAAQ+ TF++ E+ S+
Sbjct: 460 HVLYDEIGFSADELQELVHSLSYVYQRSTSAISVVAPICYAHLAAAQLGTFMKFEDQSET 281
Query: 371 SSSQGG 388
SSS GG
Sbjct: 280 SSSHGG 263
Score = 94.5 bits (200), Expect(2) = 9e-023
Identities = 46/65 (70%), Positives = 51/65 (78%)
Frame = -1 / +3
Query: 387 PPWLEDASDISSNLRNVLTWAAARWA*HTGATTEMAVVLLWYT*ESE*TNSCISSALKPI 208
PPWL+D SD SSN NV + AAA+ A* GATTEMA+VLLWYT*ESE T+S SSA KPI
Sbjct: 264 PPWLDDVSD*SSNFMNVPS*AAAK*A*QIGATTEMALVLLWYT*ESEWTSS*SSSAEKPI 443
Query: 207 SSCRT 193
SS RT
Sbjct: 444 SSYRT 458
Score = 34.5 bits (69), Expect(2) = 9e-023
Identities = 17/29 (58%), Positives = 17/29 (58%)
Frame = -1 / +3
Query: 471 *QKNMELLTLSCRRGSSGTGALPAEVCPP 385
*QKNMEL TLS GS T P V PP
Sbjct: 183 *QKNMELATLSLSLGSCATEIGPGAVIPP 269
>gb|AE005172.1| Arabidopsis thaliana chromosome 1, top arm complete sequence
Length = 14221815
Score = 115 bits (246), Expect(2) = 8e-028
Identities = 45/110 (40%), Positives = 69/110 (62%)
Frame = +2 / +2
Query: 80 NVLPGTVVDSKVCHPKNFDFYMCAHAGMIGTTRPTHYHVLHDEIGFNADEMQEFVHSLSY 259
NV GTVVD+ + HP +DFY+C+ G IGT++PTHY+VL DEIGFN++++Q+ + L +
Sbjct: 11200679 NVPSGTVVDTTIIHPFEYDFYLCSQHGAIGTSKPTHYYVLSDEIGFNSNQIQKLIFDLCF 11200858
Query: 260 VYQRSTTAISVVAPVCYAHLAAAQVSTFLRLEEMSDASSSQGGGHTSAGS 409
+ R T +++V PV YA AA++ + M S G +S+ S
Sbjct: 11200859 TFTRCTKPVALVPPVSYADKAASRGRVYYEASLMKKNSKQSRGASSSSAS 11201008
Score = 111 bits (237), Expect = 3e-023
Identities = 40/82 (48%), Positives = 59/82 (71%)
Frame = +2 / +3
Query: 80 NVLPGTVVDSKVCHPKNFDFYMCAHAGMIGTTRPTHYHVLHDEIGFNADEMQEFVHSLSY 259
NV GTVVD+KV HP +DFY+C+H G IGT++PTHY+ L DE+GF +D++Q+ + + +
Sbjct: 11193474 NVPSGTVVDTKVIHPYEYDFYLCSHHGGIGTSKPTHYYTLWDELGFTSDQVQKLIFEMCF 11193653
Query: 260 VYQRSTTAISVVAPVCYAHLAA 325
+ R T +S+V PV YA + A
Sbjct: 11193654 TFTRCTKPVSLVPPVYYADMVA 11193719
Score = 30.4 bits (60), Expect(2) = 8e-028
Identities = 11/19 (57%), Positives = 15/19 (78%)
Frame = +2 / +2
Query: 5 WSPKFTVIVAQKNXHTKFF 61
++P+ TVIVAQK T+FF
Sbjct: 11200586 YNPQITVIVAQKRHQTRFF 11200642
>gb|AC007654.2|AC007654 Genomic sequence for Arabidopsis thaliana BAC T19E23 from chromosome I,
complete sequence
Length = 87618
Score = 115 bits (246), Expect(2) = 8e-028
Identities = 45/110 (40%), Positives = 69/110 (62%)
Frame = +2 / +2
Query: 80 NVLPGTVVDSKVCHPKNFDFYMCAHAGMIGTTRPTHYHVLHDEIGFNADEMQEFVHSLSY 259
NV GTVVD+ + HP +DFY+C+ G IGT++PTHY+VL DEIGFN++++Q+ + L +
Sbjct: 32390 NVPSGTVVDTTIIHPFEYDFYLCSQHGAIGTSKPTHYYVLSDEIGFNSNQIQKLIFDLCF 32569
Query: 260 VYQRSTTAISVVAPVCYAHLAAAQVSTFLRLEEMSDASSSQGGGHTSAGS 409
+ R T +++V PV YA AA++ + M S G +S+ S
Sbjct: 32570 TFTRCTKPVALVPPVSYADKAASRGRVYYEASLMKKNSKQSRGASSSSAS 32719
Score = 111 bits (237), Expect = 3e-023
Identities = 40/82 (48%), Positives = 59/82 (71%)
Frame = +2 / +3
Query: 80 NVLPGTVVDSKVCHPKNFDFYMCAHAGMIGTTRPTHYHVLHDEIGFNADEMQEFVHSLSY 259
NV GTVVD+KV HP +DFY+C+H G IGT++PTHY+ L DE+GF +D++Q+ + + +
Sbjct: 25185 NVPSGTVVDTKVIHPYEYDFYLCSHHGGIGTSKPTHYYTLWDELGFTSDQVQKLIFEMCF 25364
Query: 260 VYQRSTTAISVVAPVCYAHLAA 325
+ R T +S+V PV YA + A
Sbjct: 25365 TFTRCTKPVSLVPPVYYADMVA 25430
Score = 30.4 bits (60), Expect(2) = 8e-028
Identities = 11/19 (57%), Positives = 15/19 (78%)
Frame = +2 / +2
Query: 5 WSPKFTVIVAQKNXHTKFF 61
++P+ TVIVAQK T+FF
Sbjct: 32297 YNPQITVIVAQKRHQTRFF 32353
>ref|NM_102867.1| Arabidopsis thaliana unknown protein AT1G31290 mRNA, complete cds
Length = 3585
Score = 115 bits (246), Expect(2) = 8e-028
Identities = 45/110 (40%), Positives = 69/110 (62%)
Frame = +2 / +1
Query: 80 NVLPGTVVDSKVCHPKNFDFYMCAHAGMIGTTRPTHYHVLHDEIGFNADEMQEFVHSLSY 259
NV GTVVD+ + HP +DFY+C+ G IGT++PTHY+VL DEIGFN++++Q+ + L +
Sbjct: 3166 NVPSGTVVDTTIIHPFEYDFYLCSQHGAIGTSKPTHYYVLSDEIGFNSNQIQKLIFDLCF 3345
Query: 260 VYQRSTTAISVVAPVCYAHLAAAQVSTFLRLEEMSDASSSQGGGHTSAGS 409
+ R T +++V PV YA AA++ + M S G +S+ S
Sbjct: 3346 TFTRCTKPVALVPPVSYADKAASRGRVYYEASLMKKNSKQSRGASSSSAS 3495
Score = 30.4 bits (60), Expect(2) = 8e-028
Identities = 11/19 (57%), Positives = 15/19 (78%)
Frame = +2 / +1
Query: 5 WSPKFTVIVAQKNXHTKFF 61
++P+ TVIVAQK T+FF
Sbjct: 3073 YNPQITVIVAQKRHQTRFF 3129
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 1,699,272,954
Number of Sequences: 1013581
Number of extensions: 25438375
Number of successful extensions: 177141
Number of sequences better than 1.0e-020: 64
length of database: 302,980,290
effective HSP length: 56
effective length of database: 246,219,754
effective search space used: 47027973014
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)