BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QCN28g01.yg.2.1
(513 letters)
Database: Triticum_nucl_with_EST.fasta
636,343 sequences; 367,240,239 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CA723856.1|CA723856 wds1f.pk002.o9 wds1f Triticum aestiv... 396 e-109
gb|CA724387.1|CA724387 wds1f.pk004.o9 wds1f Triticum aestiv... 369 e-100
gb|BE428381.1|BE428381 MTD006.D05F990616 ITEC MTD Durum Whe... 40 0.14
gb|CD910364.1|CD910364 G550.001B15F010301 G550 Triticum aes... 40 0.14
>gb|CA723856.1|CA723856 wds1f.pk002.o9 wds1f Triticum aestivum cDNA clone wds1f.pk002.o9 5'
end, mRNA sequence
Length = 426
Score = 396 bits (200), Expect = e-109
Identities = 338/384 (88%)
Strand = Plus / Minus
Query: 100 gtacatcatccctcttacagttcttgtcaaagtttgtccccggtatgatgcccaaaggcg 159
|||||||||||||||||||||||| ||||||||||| ||| ||||||||||||||||||
Sbjct: 385 gtacatcatccctcttacagttctcgtcaaagtttggcccttgtatgatgcccaaaggcg 326
Query: 160 aagctgctcttcagaatgctcagtctcgtggagttgatcttcactctcacaatgcaccct 219
||||| ||||| | || |||||||| |||||| |||||| ||| || | ||||||
Sbjct: 325 aagctcatcttccgtttgttcagtctcacggagttcctcttcattcttgcagtccaccct 266
Query: 220 ttcaagaaaatttttccattcatctgggtagattttttgcaaataaaaaaggatggaaac 279
||||||||| ||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct: 265 ttcaagaaagtttttccattcatctgggtagattttttgcaggtaaaaaaggatagaaac 206
Query: 280 tccgtcctcattctgttctgctagtgcttgtgaagagaaaagaacatcttctttataata 339
|| ||||| |||| ||| ||||||||||||| |||||||| || |||||||| |||||
Sbjct: 205 cccatcctcgttctcttcctctagtgcttgtgaggagaaaaggacgtcttctttgtaata 146
Query: 340 aggagtcaagacagagaagggcaacatttgccgcacttttggagcatctggcatcgacat 399
|||||||||||||||||||||| ||| | |||||||||||||| | |||||| |||
Sbjct: 145 gggagtcaagacagagaagggcagcatattgcgcacttttggagcttttggcatgtccat 86
Query: 400 aaaaagagaattagcaaagaaagatatcctccttctagcatccaggtttgtagggacatc 459
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 85 aaaaagagaattagcaaagaaagatatcctccttctagcatccaggtttgtaggaacatc 26
Query: 460 catagccgattccttcaccgtgag 483
|||||| ||||||||||| |||||
Sbjct: 25 catagcagattccttcactgtgag 2
>gb|CA724387.1|CA724387 wds1f.pk004.o9 wds1f Triticum aestivum cDNA clone wds1f.pk004.o9 5'
end, mRNA sequence
Length = 430
Score = 369 bits (186), Expect = e-100
Identities = 338/386 (87%), Gaps = 2/386 (0%)
Strand = Plus / Minus
Query: 100 gtacatcatccctcttacagttcttgtcaaagtttgtccccggtatgatgcccaaaggcg 159
|||||||||||||||||||||| | ||||||||||| |||| ||||||||||||||||||
Sbjct: 387 gtacatcatccctcttacagttttcgtcaaagtttggcccctgtatgatgcccaaaggcg 328
Query: 160 aagctgctctt-cagaatgctcagtctcgtggagttgatcttcactctcacaatgcaccc 218
||||| |||| | | || |||||||| |||||| |||||| ||| || | |||||
Sbjct: 327 aagctcatctttccgtttgttcagtctcacggagttcctcttcattcttgcagtccaccc 268
Query: 219 tttcaagaaaatttttccattcatct-gggtagattttttgcaaataaaaaaggatggaa 277
|||||||||| ||||||||||||||| |||||||||||||||| ||||||||||| |||
Sbjct: 267 tttcaagaaagtttttccattcatcttgggtagattttttgcaggtaaaaaaggatagaa 208
Query: 278 actccgtcctcattctgttctgctagtgcttgtgaagagaaaagaacatcttctttataa 337
|| || ||||| |||| ||| ||||||||||||| |||||||| || |||||||| |||
Sbjct: 207 accccatcctcgttctcttcctctagtgcttgtgaggagaaaaggacgtcttctttgtaa 148
Query: 338 taaggagtcaagacagagaagggcaacatttgccgcacttttggagcatctggcatcgac 397
|| |||||||||||||||||||||| ||| | |||||||||||||| | |||||| |
Sbjct: 147 tagggagtcaagacagagaagggcagcatattgcgcacttttggagcttttggcatgtcc 88
Query: 398 ataaaaagagaattagcaaagaaagatatcctccttctagcatccaggtttgtagggaca 457
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 87 ataaaaagagaattagcaaagaaagatatcctccttctagcatccaggtttgtaggaaca 28
Query: 458 tccatagccgattccttcaccgtgag 483
|||||||| ||||||||||| |||||
Sbjct: 27 tccatagcagattccttcactgtgag 2
>gb|BE428381.1|BE428381 MTD006.D05F990616 ITEC MTD Durum Wheat Root Library Triticum
turgidum subsp. durum cDNA clone MTD006.D05, mRNA
sequence
Length = 396
Score = 40.1 bits (20), Expect = 0.14
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 100 gtacatcatccctcttacagttct 123
||||||||||||||| ||||||||
Sbjct: 303 gtacatcatccctctcacagttct 280
>gb|CD910364.1|CD910364 G550.001B15F010301 G550 Triticum aestivum cDNA clone G550001B15,
mRNA sequence
Length = 723
Score = 40.1 bits (20), Expect = 0.14
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 72 catcagtgctgatactaaatctttcttg 99
|||||| |||||||| ||||||||||||
Sbjct: 67 catcagagctgataccaaatctttcttg 40
Database: Triticum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 3:01 PM
Number of letters in database: 367,240,239
Number of sequences in database: 636,343
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 94,732
Number of Sequences: 636343
Number of extensions: 94732
Number of successful extensions: 24101
Number of sequences better than 0.5: 4
Number of HSP's better than 0.5 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 24094
Number of HSP's gapped (non-prelim): 6
length of query: 513
length of database: 367,240,239
effective HSP length: 19
effective length of query: 494
effective length of database: 355,149,722
effective search space: 175443962668
effective search space used: 175443962668
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)