BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QCN1e04.yg.2.1
(361 letters)
Database: Triticum_nucl_with_EST.fasta
636,343 sequences; 367,240,239 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|DN949159.1|DN949159 KUCD01_13_G03_T3 WSWR cDNA library T... 139 1e-031
gb|DR733411.1|DR733411 FGAS079169 Triticum aestivum FGAS: L... 125 2e-027
gb|CB307721.1|CB307721 HFIG706 Hessian fly infested cDNA li... 76 2e-012
>gb|DN949159.1|DN949159 KUCD01_13_G03_T3 WSWR cDNA library Triticum aestivum cDNA, mRNA
sequence
Length = 1214
Score = 139 bits (70), Expect = 1e-031
Identities = 145/170 (85%)
Strand = Plus / Plus
Query: 90 catctaccatgttcttgaagaaacggttcccctgtatgtagctatgatagtggcctacct 149
|||||||||||||||||||| || || |||||||||| |||||| | ||||||||
Sbjct: 244 catctaccatgttcttgaagcgacaacaccattgtatgtagccatgatactagcctacct 303
Query: 150 atccatacaatggtggaagctgttcacgccagagcagtgctccggtatcaacaagttcgt 209
||||||| ||||||||||| ||||||| |||||||||||||| || ||||||||||||||
Sbjct: 304 atccataaaatggtggaagttgttcactccagagcagtgctctgggatcaacaagttcgt 363
Query: 210 agcgaagttttccatccctttgctctctttccagatcctctctacaaaca 259
|| || || ||||||||| | |||||||||||| || |||| |||||||
Sbjct: 364 ggccaatttctccatccctcttctctctttccaggtcatctccacaaaca 413
>gb|DR733411.1|DR733411 FGAS079169 Triticum aestivum FGAS: Library 2 Gate 3 Triticum
aestivum cDNA, mRNA sequence
Length = 824
Score = 125 bits (63), Expect = 2e-027
Identities = 111/127 (87%)
Strand = Plus / Plus
Query: 133 atgatagtggcctacctatccatacaatggtggaagctgttcacgccagagcagtgctcc 192
|||||| | ||||||||||||||| ||||||||||| ||||||| ||||||||||||||
Sbjct: 112 atgatactagcctacctatccataaaatggtggaagttgttcactccagagcagtgctct 171
Query: 193 ggtatcaacaagttcgtagcgaagttttccatccctttgctctctttccagatcctctct 252
|| |||||||||||||| || || || ||||||||| | |||||||||||| || ||||
Sbjct: 172 gggatcaacaagttcgtggccaacttctccatccctcttctctctttccaggtcatctcc 231
Query: 253 acaaaca 259
|||||||
Sbjct: 232 acaaaca 238
>gb|CB307721.1|CB307721 HFIG706 Hessian fly infested cDNA library Triticum aestivum cDNA,
mRNA sequence
Length = 644
Score = 75.8 bits (38), Expect = 2e-012
Identities = 55/61 (90%)
Strand = Plus / Minus
Query: 149 tatccatacaatggtggaagctgttcacgccagagcagtgctccggtatcaacaagttcg 208
|||||||| ||||||||||| ||||||| |||||||||||||| || |||| ||||||||
Sbjct: 644 tatccataaaatggtggaagttgttcactccagagcagtgctctgggatcancaagttcg 585
Query: 209 t 209
|
Sbjct: 584 t 584
Database: Triticum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 3:01 PM
Number of letters in database: 367,240,239
Number of sequences in database: 636,343
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 41,077
Number of Sequences: 636343
Number of extensions: 41077
Number of successful extensions: 11453
Number of sequences better than 0.5: 3
Number of HSP's better than 0.5 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 11445
Number of HSP's gapped (non-prelim): 8
length of query: 361
length of database: 367,240,239
effective HSP length: 19
effective length of query: 342
effective length of database: 355,149,722
effective search space: 121461204924
effective search space used: 121461204924
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)