BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QCM12h10.yg.2.1
(339 letters)
Database: Triticum_nucl_with_EST.fasta
636,343 sequences; 367,240,239 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BE585656.1|BE585656 EST#6PSP6_B03_b3_025 KSU wheat Fusar... 240 5e-062
gb|CK210964.1|CK210964 FGAS022791 Triticum aestivum FGAS: L... 230 5e-059
gb|DR736451.1|DR736451 FGAS081821 Triticum aestivum FGAS: L... 206 7e-052
gb|BJ243965.1|BJ243965 BJ243965 Y. Ogihara unpublished cDNA... 170 4e-041
gb|BG604766.1|BG604766 WHE0941_H10_O19ZS Wheat 5-15 DAP spi... 78 4e-013
gb|CA665056.1|CA665056 wlk1.pk0011.c3 wlk1 Triticum aestivu... 74 7e-012
gb|CD886203.1|CD886203 G118.101K08F010601 G118 Triticum aes... 60 1e-007
gb|DQ086489.1| Triticum aestivum putative 1,3-beta-glucan s... 60 1e-007
gb|BJ269461.1|BJ269461 BJ269461 Y. Ogihara unpublished cDNA... 58 4e-007
gb|CV761327.1|CV761327 FGAS055715 Triticum aestivum FGAS: L... 58 4e-007
gb|AJ611269.1|AJ611269 AJ611269 Triticum turgidum subsp. du... 54 6e-006
gb|BJ243972.1|BJ243972 BJ243972 Y. Ogihara unpublished cDNA... 40 0.094
gb|CD925510.1|CD925510 G750.117H07F010711 G750 Triticum aes... 40 0.094
>gb|BE585656.1|BE585656 EST#6PSP6_B03_b3_025 KSU wheat Fusarium graminearum infected spike
cDNA library Triticum aestivum cDNA clone
EST#6PSP6_B03_b3_025, mRNA sequence
Length = 695
Score = 240 bits (121), Expect = 5e-062
Identities = 276/339 (81%)
Strand = Plus / Minus
Query: 1 acactgttttcaaccaatcaaaaccagannnnntaaaagcaaatggagccataatccatg 60
|||| ||||||||||||||||| ||||| |||| |||||||||||||| ||||| |
Sbjct: 551 acacagttttcaaccaatcaaagccagaaggattaaatgcaaatggagccatgatccagg 492
Query: 61 ataccaccagaaaccagctagannnnnnnnnnnntatgtaaacaagtgtattcttggcaa 120
| ||||| |||||||||||||| ||||||||||||||| ||| ||||||
Sbjct: 491 acaccacgagaaaccagctagatatcatcatgactatgtaaacaagtgtgttcctggcaa 432
Query: 121 taacactgtgtgcagcatacacagtcaatattattccaagctctattgcctttatgaagt 180
| |||||||| || |||||||| |||||||||||||| |||||||| |||||||||||||
Sbjct: 431 tcacactgtgagcggcatacacggtcaatattattccgagctctatagcctttatgaagt 372
Query: 181 ggcccctagcatacagcntgtaattttcagcaaaactcttgtgctgcacaacaaaaccac 240
||| ||||||||| ||| ||||||||||||| |||||||| |||||||||||||| ||||
Sbjct: 371 ggctcctagcatatagcctgtaattttcagcgaaactcttatgctgcacaacaaagccac 312
Query: 241 gnnnagtagcacggtattttgcaccaccatgaaggattgnnnngtcannnnnntggctct 300
| |||||| || || ||||||||||||||||| |||| | || ||||| |
Sbjct: 311 ggccagtagcccgatactttgcaccaccatgaagaattgttcggccatagtaatggcttt 252
Query: 301 tagttcccatggaaaatgtgnnnaacacagatgaaaaat 339
| |||||||||||||||||| || ||||| |||||||
Sbjct: 251 ttgttcccatggaaaatgtgtagaagacagacgaaaaat 213
>gb|CK210964.1|CK210964 FGAS022791 Triticum aestivum FGAS: Library 5 GATE 7 Triticum
aestivum cDNA, mRNA sequence
Length = 1212
Score = 230 bits (116), Expect = 5e-059
Identities = 233/279 (83%)
Strand = Plus / Minus
Query: 1 acactgttttcaaccaatcaaaaccagannnnntaaaagcaaatggagccataatccatg 60
|||| ||||||||||||||||| ||||| |||| |||||||||||||| ||||| |
Sbjct: 347 acacagttttcaaccaatcaaagccagaaggattaaatgcaaatggagccatgatccagg 288
Query: 61 ataccaccagaaaccagctagannnnnnnnnnnntatgtaaacaagtgtattcttggcaa 120
| ||||| ||||||||||| || ||||||||||||||| ||| ||||||
Sbjct: 287 acaccacaagaaaccagcttgatatcatcatgactatgtaaacaagtgtgttcctggcaa 228
Query: 121 taacactgtgtgcagcatacacagtcaatattattccaagctctattgcctttatgaagt 180
| |||||||| || |||||||| |||||||||||||| |||||||| |||||||||||||
Sbjct: 227 tcacactgtgagcggcatacacggtcaatattattccgagctctatagcctttatgaagt 168
Query: 181 ggcccctagcatacagcntgtaattttcagcaaaactcttgtgctgcacaacaaaaccac 240
||| ||||||||| ||| ||||||||||||| |||||||| |||||||||||||| ||||
Sbjct: 167 ggctcctagcatatagcctgtaattttcagcgaaactcttatgctgcacaacaaagccac 108
Query: 241 gnnnagtagcacggtattttgcaccaccatgaaggattg 279
| |||||| || || ||||||||||||||||| ||||
Sbjct: 107 ggccagtagcccgatactttgcaccaccatgaagaattg 69
>gb|DR736451.1|DR736451 FGAS081821 Triticum aestivum FGAS: Library 5 GATE 7 Triticum
aestivum cDNA, mRNA sequence
Length = 1087
Score = 206 bits (104), Expect = 7e-052
Identities = 269/334 (80%), Gaps = 1/334 (0%)
Strand = Plus / Minus
Query: 6 gttttcaaccaatcaaaaccagannnnntaaaagcaaatggagccataatccatgatacc 65
||||||||||||||||| ||||| | || |||||||||||||| ||||| || |||
Sbjct: 901 gttttcaaccaatcaaagccagaaggatttaatgcaaatggagccatgatccaggacacc 842
Query: 66 accagaaaccagctagannnnnnnnnnnntatgtaaacaagtgtattcttggcaataaca 125
|| |||||| ||||||| ||||||||||||||| ||| ||||||| |||
Sbjct: 841 acgagaaacaagctagatatcatcatgactatgtaaacaagtgtgttcctggcaatcaca 782
Query: 126 ctgtgtgcagcatacacagtcaatattattccaagctctattgcctttatgaagtggccc 185
||||| || |||||||| |||||||||||||| |||||||| ||||||||||||| || |
Sbjct: 781 ctgtgagcggcatacacggtcaatattattccgagctctatagcctttatgaagt-gctc 723
Query: 186 ctagcatacagcntgtaattttcagcaaaactcttgtgctgcacaacaaaaccacgnnna 245
|||||||| ||| ||||||||||||| |||||||| |||||||||||||| ||||| |
Sbjct: 722 ctagcatatagcctgtaattttcagcgaaactcttatgctgcacaacaaagccacggcca 663
Query: 246 gtagcacggtattttgcaccaccatgaaggattgnnnngtcannnnnntggctcttagtt 305
||||| || || ||||||||||||||||| |||| | || ||||| || |||
Sbjct: 662 gtagcccgatactttgcaccaccatgaagaattgttcggccatagtaatggctttttgtt 603
Query: 306 cccatggaaaatgtgnnnaacacagatgaaaaat 339
||||||||||||||| || ||||| |||||||
Sbjct: 602 cccatggaaaatgtgtagaagacagacgaaaaat 569
>gb|BJ243965.1|BJ243965 BJ243965 Y. Ogihara unpublished cDNA library, Wh_f Triticum
aestivum cDNA clone whf13j08 5', mRNA sequence
Length = 605
Score = 170 bits (86), Expect = 4e-041
Identities = 187/225 (83%), Gaps = 1/225 (0%)
Strand = Plus / Minus
Query: 116 ggcaataacactgtgtgcagcatacacagtcaatattattccaagctctattgcctttat 175
|||||| |||||||| || |||||||| |||||||||||||| |||||||| ||||||||
Sbjct: 605 ggcaatcacactgtgagcggcatacacggtcaatattattccgagctctatagcctttat 546
Query: 176 gaagtggcccctagcatacagcntgtaattttcagcaaaactcttgtgctgcacaacaaa 235
|||||||| ||||||||| ||| ||||||||||||| |||||||| ||||||||||||||
Sbjct: 545 gaagtggctcctagcatatagcctgtaattttcagcgaaactcttatgctgcacaacaaa 486
Query: 236 -accacgnnnagtagcacggtattttgcaccaccatgaaggattgnnnngtcannnnnnt 294
||||| |||||| || || ||||||||||||||||| |||| | || |
Sbjct: 485 ggccacggccagtagcccgatactttgcaccaccatgaagaattgttcggccatagtaat 426
Query: 295 ggctcttagttcccatggaaaatgtgnnnaacacagatgaaaaat 339
|||| || |||||||||||||||||| || ||||| |||||||
Sbjct: 425 ggctttttgttcccatggaaaatgtgtagaagacagacgaaaaat 381
>gb|BG604766.1|BG604766 WHE0941_H10_O19ZS Wheat 5-15 DAP spike cDNA library Triticum
aestivum cDNA clone WHE0941_H10_O19, mRNA sequence
Length = 291
Score = 77.8 bits (39), Expect = 4e-013
Identities = 70/82 (85%)
Strand = Plus / Minus
Query: 1 acactgttttcaaccaatcaaaaccagannnnntaaaagcaaatggagccataatccatg 60
|||| ||||||||||||||||| ||||| |||| |||||||||||||| ||||| |
Sbjct: 102 acacagttttcaaccaatcaaagccagaaggattaaatgcaaatggagccatgatccagg 43
Query: 61 ataccaccagaaaccagctaga 82
| ||||| ||||||||||||||
Sbjct: 42 acaccacgagaaaccagctaga 21
>gb|CA665056.1|CA665056 wlk1.pk0011.c3 wlk1 Triticum aestivum cDNA clone wlk1.pk0011.c3 5'
end, mRNA sequence
Length = 385
Score = 73.8 bits (37), Expect = 7e-012
Identities = 89/106 (83%), Gaps = 2/106 (1%)
Strand = Plus / Minus
Query: 175 tgaagtggcccctagcatacagcntgtaattttcagcaaaactcttgtgctgcacaacaa 234
||||||||| | |||||| ||| | |||||||||||||| ||||| |||||||||||||
Sbjct: 334 tgaagtggctcntagcatntagcctntaattttcagcaaa-ctcttatgctgcacaacaa 276
Query: 235 aaccac-gnnnagtagcacggtattttgcaccaccatgaaggattg 279
| |||| | |||||| || || ||||||||||||||||| ||||
Sbjct: 275 agccacggcccagtagcccgatactttgcaccaccatgaagaattg 230
>gb|CD886203.1|CD886203 G118.101K08F010601 G118 Triticum aestivum cDNA clone G118101K08,
mRNA sequence
Length = 602
Score = 60.0 bits (30), Expect = 1e-007
Identities = 54/63 (85%)
Strand = Plus / Minus
Query: 217 tcttgtgctgcacaacaaaaccacgnnnagtagcacggtattttgcaccaccatgaagga 276
||||||||| ||||||||| ||||| |||||| || || |||||||| ||||||||||
Sbjct: 351 tcttgtgctccacaacaaatccacggccagtagctcgatactttgcacctccatgaagga 292
Query: 277 ttg 279
|||
Sbjct: 291 ttg 289
>gb|DQ086489.1| Triticum aestivum putative 1,3-beta-glucan synthase 22 (GSL22)
mRNA, partial cds
Length = 433
Score = 60.0 bits (30), Expect = 1e-007
Identities = 54/63 (85%)
Strand = Plus / Minus
Query: 217 tcttgtgctgcacaacaaaaccacgnnnagtagcacggtattttgcaccaccatgaagga 276
||||||||| ||||||||| ||||| |||||| || || |||||||| ||||||||||
Sbjct: 421 tcttgtgctccacaacaaatccacggccagtagctcgatactttgcacctccatgaagga 362
Query: 277 ttg 279
|||
Sbjct: 361 ttg 359
>gb|BJ269461.1|BJ269461 BJ269461 Y. Ogihara unpublished cDNA library, Wh_oh Triticum
aestivum cDNA clone whoh22b10 5', mRNA sequence
Length = 628
Score = 58.0 bits (29), Expect = 4e-007
Identities = 44/50 (88%)
Strand = Plus / Minus
Query: 228 acaacaaaaccacgnnnagtagcacggtattttgcaccaccatgaaggat 277
||||||||||| || ||||||||| || ||||||||||||||||||||
Sbjct: 524 acaacaaaacctcgtccagtagcacgatactttgcaccaccatgaaggat 475
>gb|CV761327.1|CV761327 FGAS055715 Triticum aestivum FGAS: Library 2 Gate 3 Triticum
aestivum cDNA, mRNA sequence
Length = 871
Score = 58.0 bits (29), Expect = 4e-007
Identities = 44/50 (88%)
Strand = Plus / Minus
Query: 228 acaacaaaaccacgnnnagtagcacggtattttgcaccaccatgaaggat 277
||||||||||| || ||||||||| || ||||||||||||||||||||
Sbjct: 175 acaacaaaacctcgtccagtagcacgatactttgcaccaccatgaaggat 126
>gb|AJ611269.1|AJ611269 AJ611269 Triticum turgidum subsp. durum etiolated seedling 20 day
Triticum turgidum subsp. durum cDNA clone 04551R, mRNA
sequence
Length = 500
Score = 54.0 bits (27), Expect = 6e-006
Identities = 45/52 (86%)
Strand = Plus / Minus
Query: 228 acaacaaaaccacgnnnagtagcacggtattttgcaccaccatgaaggattg 279
||||||||||| || ||||||||| || || |||||||||||||||||||
Sbjct: 338 acaacaaaacctcgtccagtagcacgatacttcgcaccaccatgaaggattg 287
>gb|BJ243972.1|BJ243972 BJ243972 Y. Ogihara unpublished cDNA library, Wh_f Triticum
aestivum cDNA clone whf13j19 5', mRNA sequence
Length = 192
Score = 40.1 bits (20), Expect = 0.094
Identities = 32/37 (86%)
Strand = Plus / Minus
Query: 303 gttcccatggaaaatgtgnnnaacacagatgaaaaat 339
|||||||||||||||||| || ||||| |||||||
Sbjct: 138 gttcccatggaaaatgtgtagaagacagacgaaaaat 102
>gb|CD925510.1|CD925510 G750.117H07F010711 G750 Triticum aestivum cDNA clone G750117H07,
mRNA sequence
Length = 575
Score = 40.1 bits (20), Expect = 0.094
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 258 tttgcaccaccatgaaggat 277
||||||||||||||||||||
Sbjct: 461 tttgcaccaccatgaaggat 442
Database: Triticum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 3:01 PM
Number of letters in database: 367,240,239
Number of sequences in database: 636,343
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 42,969
Number of Sequences: 636343
Number of extensions: 42969
Number of successful extensions: 11915
Number of sequences better than 0.5: 13
Number of HSP's better than 0.5 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 11886
Number of HSP's gapped (non-prelim): 24
length of query: 339
length of database: 367,240,239
effective HSP length: 19
effective length of query: 320
effective length of database: 355,149,722
effective search space: 113647911040
effective search space used: 113647911040
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)