BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QCM12g02.yg.2.1
(480 letters)
Database: Triticum_nucl_with_EST.fasta
636,343 sequences; 367,240,239 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BE585656.1|BE585656 EST#6PSP6_B03_b3_025 KSU wheat Fusar... 484 e-135
gb|DR736451.1|DR736451 FGAS081821 Triticum aestivum FGAS: L... 450 e-125
gb|BJ243965.1|BJ243965 BJ243965 Y. Ogihara unpublished cDNA... 381 e-104
gb|CK210964.1|CK210964 FGAS022791 Triticum aestivum FGAS: L... 309 9e-083
gb|CA665056.1|CA665056 wlk1.pk0011.c3 wlk1 Triticum aestivu... 287 3e-076
gb|BJ243972.1|BJ243972 BJ243972 Y. Ogihara unpublished cDNA... 206 1e-051
gb|CD886203.1|CD886203 G118.101K08F010601 G118 Triticum aes... 180 6e-044
gb|DQ086489.1| Triticum aestivum putative 1,3-beta-glucan s... 178 2e-043
gb|BG604766.1|BG604766 WHE0941_H10_O19ZS Wheat 5-15 DAP spi... 105 3e-021
gb|BJ269461.1|BJ269461 BJ269461 Y. Ogihara unpublished cDNA... 68 6e-010
gb|AJ611269.1|AJ611269 AJ611269 Triticum turgidum subsp. du... 68 6e-010
gb|CV761327.1|CV761327 FGAS055715 Triticum aestivum FGAS: L... 68 6e-010
gb|CD925510.1|CD925510 G750.117H07F010711 G750 Triticum aes... 40 0.14
>gb|BE585656.1|BE585656 EST#6PSP6_B03_b3_025 KSU wheat Fusarium graminearum infected spike
cDNA library Triticum aestivum cDNA clone
EST#6PSP6_B03_b3_025, mRNA sequence
Length = 695
Score = 484 bits (244), Expect = e-135
Identities = 400/454 (88%)
Strand = Plus / Minus
Query: 1 acactgttttcaaccaatcaaaaccagacggattaaaagcaaatggagccataatccatg 60
|||| ||||||||||||||||| ||||| |||||||| |||||||||||||| ||||| |
Sbjct: 551 acacagttttcaaccaatcaaagccagaaggattaaatgcaaatggagccatgatccagg 492
Query: 61 ataccaccagaaaccagctagatatatnnnnnnttatgtaaacaagtgtattcttggcaa 120
| ||||| ||||||||||||||||| ||||||||||||||| ||| ||||||
Sbjct: 491 acaccacgagaaaccagctagatatcatcatgactatgtaaacaagtgtgttcctggcaa 432
Query: 121 taacactgtgtgcagcatacacagtcaatattattccaagctctattgcctttatgaagt 180
| |||||||| || |||||||| |||||||||||||| |||||||| |||||||||||||
Sbjct: 431 tcacactgtgagcggcatacacggtcaatattattccgagctctatagcctttatgaagt 372
Query: 181 ggcccctagcatacagcctgtaattttcagcaaaactcttgtgctgcacaacaaaaccac 240
||| ||||||||| ||||||||||||||||| |||||||| |||||||||||||| ||||
Sbjct: 371 ggctcctagcatatagcctgtaattttcagcgaaactcttatgctgcacaacaaagccac 312
Query: 241 ggccagtagcacggtattttgcaccaccatgaaggattgtccggccatagtaatggctct 300
|||||||||| || || ||||||||||||||||| ||||| ||||||||||||||||| |
Sbjct: 311 ggccagtagcccgatactttgcaccaccatgaagaattgttcggccatagtaatggcttt 252
Query: 301 tagttcccatggaaaatgtgtagaacacagatgaaaaattcatttgcattgtgaagaaat 360
| ||||||||||||||||||||||| ||||| ||||||||||| ||||||||||| ||||
Sbjct: 251 ttgttcccatggaaaatgtgtagaagacagacgaaaaattcatctgcattgtgaaaaaat 192
Query: 361 cccagatagcaggtaggaaaccttgttcaagagagttctctataatcattggcaatgcag 420
|||||| ||| ||||| ||||| |||||||||| ||||||| ||||||||||| ||||
Sbjct: 191 cccagacagctggtagaaaacccagttcaagagaattctctaaaatcattggcagggcag 132
Query: 421 tgaagaagccaagctgtatgatgaactgctgatt 454
||||||| || |||||||||| |||||||||||
Sbjct: 131 tgaagaatccgagctgtatgacaaactgctgatt 98
>gb|DR736451.1|DR736451 FGAS081821 Triticum aestivum FGAS: Library 5 GATE 7 Triticum
aestivum cDNA, mRNA sequence
Length = 1087
Score = 450 bits (227), Expect = e-125
Identities = 393/449 (87%), Gaps = 1/449 (0%)
Strand = Plus / Minus
Query: 6 gttttcaaccaatcaaaaccagacggattaaaagcaaatggagccataatccatgatacc 65
||||||||||||||||| ||||| ||||| || |||||||||||||| ||||| || |||
Sbjct: 901 gttttcaaccaatcaaagccagaaggatttaatgcaaatggagccatgatccaggacacc 842
Query: 66 accagaaaccagctagatatatnnnnnnttatgtaaacaagtgtattcttggcaataaca 125
|| |||||| |||||||||| ||||||||||||||| ||| ||||||| |||
Sbjct: 841 acgagaaacaagctagatatcatcatgactatgtaaacaagtgtgttcctggcaatcaca 782
Query: 126 ctgtgtgcagcatacacagtcaatattattccaagctctattgcctttatgaagtggccc 185
||||| || |||||||| |||||||||||||| |||||||| |||||||||||||| | |
Sbjct: 781 ctgtgagcggcatacacggtcaatattattccgagctctatagcctttatgaagtg-ctc 723
Query: 186 ctagcatacagcctgtaattttcagcaaaactcttgtgctgcacaacaaaaccacggcca 245
|||||||| ||||||||||||||||| |||||||| |||||||||||||| |||||||||
Sbjct: 722 ctagcatatagcctgtaattttcagcgaaactcttatgctgcacaacaaagccacggcca 663
Query: 246 gtagcacggtattttgcaccaccatgaaggattgtccggccatagtaatggctcttagtt 305
||||| || || ||||||||||||||||| ||||| ||||||||||||||||| || |||
Sbjct: 662 gtagcccgatactttgcaccaccatgaagaattgttcggccatagtaatggctttttgtt 603
Query: 306 cccatggaaaatgtgtagaacacagatgaaaaattcatttgcattgtgaagaaatcccag 365
|||||||||||||||||||| ||||| ||||||||||| ||||||||||| |||||||||
Sbjct: 602 cccatggaaaatgtgtagaagacagacgaaaaattcatctgcattgtgaaaaaatcccag 543
Query: 366 atagcaggtaggaaaccttgttcaagagagttctctataatcattggcaatgcagtgaag 425
| ||| ||||| ||||| |||||||||| ||||||| ||||||||||| |||||||||
Sbjct: 542 acagctggtagaaaacccagttcaagagaattctctaaaatcattggcagggcagtgaag 483
Query: 426 aagccaagctgtatgatgaactgctgatt 454
|| || |||||||||| |||||||||||
Sbjct: 482 aatccgagctgtatgacaaactgctgatt 454
>gb|BJ243965.1|BJ243965 BJ243965 Y. Ogihara unpublished cDNA library, Wh_f Triticum
aestivum cDNA clone whf13j08 5', mRNA sequence
Length = 605
Score = 381 bits (192), Expect = e-104
Identities = 304/340 (89%), Gaps = 1/340 (0%)
Strand = Plus / Minus
Query: 116 ggcaataacactgtgtgcagcatacacagtcaatattattccaagctctattgcctttat 175
|||||| |||||||| || |||||||| |||||||||||||| |||||||| ||||||||
Sbjct: 605 ggcaatcacactgtgagcggcatacacggtcaatattattccgagctctatagcctttat 546
Query: 176 gaagtggcccctagcatacagcctgtaattttcagcaaaactcttgtgctgcacaacaaa 235
|||||||| ||||||||| ||||||||||||||||| |||||||| ||||||||||||||
Sbjct: 545 gaagtggctcctagcatatagcctgtaattttcagcgaaactcttatgctgcacaacaaa 486
Query: 236 a-ccacggccagtagcacggtattttgcaccaccatgaaggattgtccggccatagtaat 294
|||||||||||||| || || ||||||||||||||||| ||||| |||||||||||||
Sbjct: 485 ggccacggccagtagcccgatactttgcaccaccatgaagaattgttcggccatagtaat 426
Query: 295 ggctcttagttcccatggaaaatgtgtagaacacagatgaaaaattcatttgcattgtga 354
|||| || ||||||||||||||||||||||| ||||| ||||||||||| ||||||||||
Sbjct: 425 ggctttttgttcccatggaaaatgtgtagaagacagacgaaaaattcatctgcattgtga 366
Query: 355 agaaatcccagatagcaggtaggaaaccttgttcaagagagttctctataatcattggca 414
| |||||||||| ||| ||||| ||||| |||||||||| ||||||| |||||||||||
Sbjct: 365 aaaaatcccagacagctggtagaaaacccagttcaagagaattctctaaaatcattggca 306
Query: 415 atgcagtgaagaagccaagctgtatgatgaactgctgatt 454
||||||||||| || |||||||||| |||||||||||
Sbjct: 305 gggcagtgaagaatccgagctgtatgacaaactgctgatt 266
>gb|CK210964.1|CK210964 FGAS022791 Triticum aestivum FGAS: Library 5 GATE 7 Triticum
aestivum cDNA, mRNA sequence
Length = 1212
Score = 309 bits (156), Expect = 9e-083
Identities = 258/294 (87%)
Strand = Plus / Minus
Query: 1 acactgttttcaaccaatcaaaaccagacggattaaaagcaaatggagccataatccatg 60
|||| ||||||||||||||||| ||||| |||||||| |||||||||||||| ||||| |
Sbjct: 347 acacagttttcaaccaatcaaagccagaaggattaaatgcaaatggagccatgatccagg 288
Query: 61 ataccaccagaaaccagctagatatatnnnnnnttatgtaaacaagtgtattcttggcaa 120
| ||||| ||||||||||| ||||| ||||||||||||||| ||| ||||||
Sbjct: 287 acaccacaagaaaccagcttgatatcatcatgactatgtaaacaagtgtgttcctggcaa 228
Query: 121 taacactgtgtgcagcatacacagtcaatattattccaagctctattgcctttatgaagt 180
| |||||||| || |||||||| |||||||||||||| |||||||| |||||||||||||
Sbjct: 227 tcacactgtgagcggcatacacggtcaatattattccgagctctatagcctttatgaagt 168
Query: 181 ggcccctagcatacagcctgtaattttcagcaaaactcttgtgctgcacaacaaaaccac 240
||| ||||||||| ||||||||||||||||| |||||||| |||||||||||||| ||||
Sbjct: 167 ggctcctagcatatagcctgtaattttcagcgaaactcttatgctgcacaacaaagccac 108
Query: 241 ggccagtagcacggtattttgcaccaccatgaaggattgtccggccatagtaat 294
|||||||||| || || ||||||||||||||||| ||||| |||||||||||||
Sbjct: 107 ggccagtagcccgatactttgcaccaccatgaagaattgttcggccatagtaat 54
>gb|CA665056.1|CA665056 wlk1.pk0011.c3 wlk1 Triticum aestivum cDNA clone wlk1.pk0011.c3 5'
end, mRNA sequence
Length = 385
Score = 287 bits (145), Expect = 3e-076
Identities = 248/281 (88%), Gaps = 2/281 (0%)
Strand = Plus / Minus
Query: 175 tgaagtggcccctagcatacagcctgtaattttcagcaaaactcttgtgctgcacaacaa 234
||||||||| | |||||| ||||| |||||||||||||| ||||| |||||||||||||
Sbjct: 334 tgaagtggctcntagcatntagcctntaattttcagcaaa-ctcttatgctgcacaacaa 276
Query: 235 aaccacggcc-agtagcacggtattttgcaccaccatgaaggattgtccggccatagtaa 293
| |||||||| |||||| || || ||||||||||||||||| ||||| || |||||||||
Sbjct: 275 agccacggcccagtagcccgatactttgcaccaccatgaagaattgttcgaccatagtaa 216
Query: 294 tggctcttagttcccatggaaaatgtgtagaacacagatgaaaaattcatttgcattgtg 353
||||| || ||||||||||||||||||||||| ||||| ||||||||||| |||| ||||
Sbjct: 215 tggctttttgttcccatggaaaatgtgtagaagacagacgaaaaattcatctgcantgtg 156
Query: 354 aagaaatcccagatagcaggtaggaaaccttgttcaagagagttctctataatcattggc 413
|| |||||||||| ||||||||| |||||| |||||||||| ||||||| ||||||||||
Sbjct: 155 aaaaaatcccagacagcaggtagaaaacctagttcaagagaattctctaaaatcattggc 96
Query: 414 aatgcagtgaagaagccaagctgtatgatgaactgctgatt 454
| ||||||||||| || |||||||||| |||||||||||
Sbjct: 95 agggcagtgaagaatccgagctgtatgacaaactgctgatt 55
>gb|BJ243972.1|BJ243972 BJ243972 Y. Ogihara unpublished cDNA library, Wh_f Triticum
aestivum cDNA clone whf13j19 5', mRNA sequence
Length = 192
Score = 206 bits (104), Expect = 1e-051
Identities = 163/183 (89%)
Strand = Plus / Minus
Query: 258 tttgcaccaccatgaaggattgtccggccatagtaatggctcttagttcccatggaaaat 317
||||||||||||||||| ||||| ||||||||||||||||| | |||||||||||||||
Sbjct: 183 tttgcaccaccatgaagaattgttcggccatagtaatggctttntgttcccatggaaaat 124
Query: 318 gtgtagaacacagatgaaaaattcatttgcattgtgaagaaatcccagatagcaggtagg 377
|||||||| ||||| ||||||||||| ||||||||||| |||||||||| ||| |||||
Sbjct: 123 gtgtagaagacagacgaaaaattcatctgcattgtgaaaaaatcccagacagctggtaga 64
Query: 378 aaaccttgttcaagagagttctctataatcattggcaatgcagtgaagaagccaagctgt 437
||||| |||||||||| ||||||| ||||||||||| ||||||||||| || ||||||
Sbjct: 63 aaacccagttcaagagaattctctaaaatcattggcagggcagtgaagaatccgagctgt 4
Query: 438 atg 440
|||
Sbjct: 3 atg 1
>gb|CD886203.1|CD886203 G118.101K08F010601 G118 Triticum aestivum cDNA clone G118101K08,
mRNA sequence
Length = 602
Score = 180 bits (91), Expect = 6e-044
Identities = 247/299 (82%)
Strand = Plus / Minus
Query: 156 ccaagctctattgcctttatgaagtggcccctagcatacagcctgtaattttcagcaaaa 215
|||||||||||||| |||| || |||| | ||||| |||||||| || || || ||
Sbjct: 412 ccaagctctattgcttttagaaaatggctacgggcatatagcctgtagttctcggcgaat 353
Query: 216 ctcttgtgctgcacaacaaaaccacggccagtagcacggtattttgcaccaccatgaagg 275
||||||||| ||||||||| |||||||||||||| || || |||||||| |||||||||
Sbjct: 352 ttcttgtgctccacaacaaatccacggccagtagctcgatactttgcacctccatgaagg 293
Query: 276 attgtccggccatagtaatggctcttagttcccatggaaaatgtgtagaacacagatgaa 335
|||||||| ||||| ||||| |||| ||||||||||| || |||||||| ||||||| |
Sbjct: 292 attgtccgcccataataatgtgtcttggttcccatggagaaggtgtagaaaacagatgca 233
Query: 336 aaattcatttgcattgtgaagaaatcccagatagcaggtaggaaaccttgttcaagagag 395
|| | || ||||||| | ||||||||||| | |||| |||||||| || ||||| ||
Sbjct: 232 aactgcaattgcatttttaagaaatcccatacagcattgaggaaaccatgctcaagtgaa 173
Query: 396 ttctctataatcattggcaatgcagtgaagaagccaagctgtatgatgaactgctgatt 454
|| || |||||||| |||||||| ||||| | ||| |||||||||| ||||||||||||
Sbjct: 172 ttttcaataatcatgggcaatgctgtgaacaggcccagctgtatgacgaactgctgatt 114
>gb|DQ086489.1| Triticum aestivum putative 1,3-beta-glucan synthase 22 (GSL22)
mRNA, partial cds
Length = 433
Score = 178 bits (90), Expect = 2e-043
Identities = 201/238 (84%)
Strand = Plus / Minus
Query: 217 tcttgtgctgcacaacaaaaccacggccagtagcacggtattttgcaccaccatgaagga 276
||||||||| ||||||||| |||||||||||||| || || |||||||| ||||||||||
Sbjct: 421 tcttgtgctccacaacaaatccacggccagtagctcgatactttgcacctccatgaagga 362
Query: 277 ttgtccggccatagtaatggctcttagttcccatggaaaatgtgtagaacacagatgaaa 336
||||||| ||||| ||||| |||| ||||||||||| || |||||||| ||||||| ||
Sbjct: 361 ttgtccgcccataataatgtgtcttggttcccatggagaaggtgtagaaaacagatgcaa 302
Query: 337 aattcatttgcattgtgaagaaatcccagatagcaggtaggaaaccttgttcaagagagt 396
| | || ||||||| | ||||||||||| | |||| |||||||| || ||||| || |
Sbjct: 301 actgcaattgcatttttaagaaatcccatacagcattgaggaaaccatgctcaagtgaat 242
Query: 397 tctctataatcattggcaatgcagtgaagaagccaagctgtatgatgaactgctgatt 454
| || |||||||| |||||||| ||||| | ||| |||||||||| ||||||||||||
Sbjct: 241 tttcaataatcatgggcaatgctgtgaacaggcccagctgtatgacgaactgctgatt 184
>gb|BG604766.1|BG604766 WHE0941_H10_O19ZS Wheat 5-15 DAP spike cDNA library Triticum
aestivum cDNA clone WHE0941_H10_O19, mRNA sequence
Length = 291
Score = 105 bits (53), Expect = 3e-021
Identities = 77/85 (90%)
Strand = Plus / Minus
Query: 1 acactgttttcaaccaatcaaaaccagacggattaaaagcaaatggagccataatccatg 60
|||| ||||||||||||||||| ||||| |||||||| |||||||||||||| ||||| |
Sbjct: 102 acacagttttcaaccaatcaaagccagaaggattaaatgcaaatggagccatgatccagg 43
Query: 61 ataccaccagaaaccagctagatat 85
| ||||| |||||||||||||||||
Sbjct: 42 acaccacgagaaaccagctagatat 18
>gb|BJ269461.1|BJ269461 BJ269461 Y. Ogihara unpublished cDNA library, Wh_oh Triticum
aestivum cDNA clone whoh22b10 5', mRNA sequence
Length = 628
Score = 67.9 bits (34), Expect = 6e-010
Identities = 46/50 (92%)
Strand = Plus / Minus
Query: 228 acaacaaaaccacggccagtagcacggtattttgcaccaccatgaaggat 277
||||||||||| || ||||||||||| || ||||||||||||||||||||
Sbjct: 524 acaacaaaacctcgtccagtagcacgatactttgcaccaccatgaaggat 475
>gb|AJ611269.1|AJ611269 AJ611269 Triticum turgidum subsp. durum etiolated seedling 20 day
Triticum turgidum subsp. durum cDNA clone 04551R, mRNA
sequence
Length = 500
Score = 67.9 bits (34), Expect = 6e-010
Identities = 76/90 (84%)
Strand = Plus / Minus
Query: 191 atacagcctgtaattttcagcaaaactcttgtgctgcacaacaaaaccacggccagtagc 250
||||||||| ||||| |||||||| | |||| | ||||||||||| || ||||||||
Sbjct: 375 atacagcctataattgtcagcaaactttatgtggcgaacaacaaaacctcgtccagtagc 316
Query: 251 acggtattttgcaccaccatgaaggattgt 280
||| || || ||||||||||||||||||||
Sbjct: 315 acgatacttcgcaccaccatgaaggattgt 286
>gb|CV761327.1|CV761327 FGAS055715 Triticum aestivum FGAS: Library 2 Gate 3 Triticum
aestivum cDNA, mRNA sequence
Length = 871
Score = 67.9 bits (34), Expect = 6e-010
Identities = 46/50 (92%)
Strand = Plus / Minus
Query: 228 acaacaaaaccacggccagtagcacggtattttgcaccaccatgaaggat 277
||||||||||| || ||||||||||| || ||||||||||||||||||||
Sbjct: 175 acaacaaaacctcgtccagtagcacgatactttgcaccaccatgaaggat 126
>gb|CD925510.1|CD925510 G750.117H07F010711 G750 Triticum aestivum cDNA clone G750117H07,
mRNA sequence
Length = 575
Score = 40.1 bits (20), Expect = 0.14
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 258 tttgcaccaccatgaaggat 277
||||||||||||||||||||
Sbjct: 461 tttgcaccaccatgaaggat 442
Database: Triticum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 3:01 PM
Number of letters in database: 367,240,239
Number of sequences in database: 636,343
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 76,120
Number of Sequences: 636343
Number of extensions: 76120
Number of successful extensions: 21171
Number of sequences better than 0.5: 13
Number of HSP's better than 0.5 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 21150
Number of HSP's gapped (non-prelim): 16
length of query: 480
length of database: 367,240,239
effective HSP length: 19
effective length of query: 461
effective length of database: 355,149,722
effective search space: 163724021842
effective search space used: 163724021842
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)