BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QCH30c02.yg.2.1
(722 letters)
Database: Triticum_nucl_with_EST.fasta
636,343 sequences; 367,240,239 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AL809242.1|AL809242 AL809242 a:11 Triticum aestivum cDNA... 48 8e-004
gb|BE605225.1|BE605225 WHE1701-1704_F07_F07ZS Wheat heat st... 40 0.21
>gb|AL809242.1|AL809242 AL809242 a:11 Triticum aestivum cDNA clone A10_a11_plate_15, mRNA
sequence
Length = 586
Score = 48.1 bits (24), Expect = 8e-004
Identities = 36/40 (90%)
Strand = Plus / Minus
Query: 1 acagtagttggctgaatctccccatcaacccataagtttt 40
||||||||||| |||| |||||||||| |||||| |||||
Sbjct: 94 acagtagttgggtgaacctccccatcagcccatatgtttt 55
>gb|BE605225.1|BE605225 WHE1701-1704_F07_F07ZS Wheat heat stressed spike cDNA library
Triticum aestivum cDNA clone WHE1701-1704_F07_F07, mRNA
sequence
Length = 378
Score = 40.1 bits (20), Expect = 0.21
Identities = 35/40 (87%)
Strand = Plus / Minus
Query: 505 acatgtcatgatcaagaaatgggtaagagctacaagcaat 544
||||||||||||||||||| || || ||| |||||||||
Sbjct: 366 acatgtcatgatcaagaaaaggataggagtgacaagcaat 327
Database: Triticum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 3:01 PM
Number of letters in database: 367,240,239
Number of sequences in database: 636,343
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 99,649
Number of Sequences: 636343
Number of extensions: 99649
Number of successful extensions: 25537
Number of sequences better than 0.5: 2
Number of HSP's better than 0.5 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 25535
Number of HSP's gapped (non-prelim): 2
length of query: 722
length of database: 367,240,239
effective HSP length: 19
effective length of query: 703
effective length of database: 355,149,722
effective search space: 249670254566
effective search space used: 249670254566
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)