BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QCH13e05.yg.2.1
(577 letters)
Database: Triticum_nucl_with_EST.fasta
636,343 sequences; 367,240,239 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BG608037.1|BG608037 WHE2496_A12_A24ZS Triticum monococcu... 303 7e-081
gb|CD892843.1|CD892843 G118.122B24F010726 G118 Triticum aes... 272 2e-071
gb|BQ838089.1|BQ838089 WHE2906_D08_G16ZS Wheat aluminum-str... 258 4e-067
gb|CD490341.1|CD490341 WHE2496_A12_A24ZT Triticum monococcu... 236 1e-060
gb|BF200163.1|BF200163 WHE2252_F12_K24ZE Triticum monococcu... 234 5e-060
gb|CD892844.1|CD892844 G118.122B24R010926 G118 Triticum aes... 111 5e-023
gb|CD919729.1|CD919729 G608.114G08F010911 G608 Triticum aes... 88 8e-016
gb|CA648276.1|CA648276 wre1n.pk0132.f9 wre1n Triticum aesti... 74 1e-011
gb|CD454892.1|CD454892 WHE1711_E11_J21ZT CS wheat heat stre... 74 1e-011
gb|BE492771.1|BE492771 WHE0564_E12_E12ZE Triticum monococcu... 60 2e-007
gb|CD906061.1|CD906061 G468.103N08R010929 G468 Triticum aes... 42 0.041
gb|CD903300.1|CD903300 G356.109O08F010919 G356 Triticum aes... 40 0.16
>gb|BG608037.1|BG608037 WHE2496_A12_A24ZS Triticum monococcum early reproductive apex cDNA
library Triticum monococcum cDNA clone WHE2496_A12_A24,
mRNA sequence
Length = 549
Score = 303 bits (153), Expect = 7e-081
Identities = 289/335 (86%)
Strand = Plus / Minus
Query: 234 ttgcaacatgttcctcgttttgttttctgaaactgatcccagaggcacatcatatccctt 293
|||||||| ||||||| ||||||||||| || | ||||||||||||||||| | ||||
Sbjct: 335 ttgcaacagtttcctcgctttgttttctggaatttgtcccagaggcacatcatntgcctt 276
Query: 294 ggttcttggtaatgagcaatcacatagccatcctcgcatccttcaaccaaaatcctccca 353
|| || ||||| || |||| |||||| |||||||| || ||||| ||||| ||||| ||
Sbjct: 275 ggctcntggtagtgggcaaccacatacccatcctcacagccttccaccaagatccttccg 216
Query: 354 tcattctcatacttgacatccaagccatccttcttcatctcattgatccatattcccatt 413
|| |||| ||| ||||||| ||||| |||||| |||||||||||||||||||||||||
Sbjct: 215 tcgttctggtacgtgacatcaaagccttccttcctcatctcattgatccatattcccatc 156
Query: 414 gcgacatcctccagcttgaacatctttaactccccactcttgtgtttcctgtaaacttct 473
|| ||||||||||||||||||||||||| |||||| || |||||||||||||||||||||
Sbjct: 155 gccacatcctccagcttgaacatctttagctcccctcttttgtgtttcctgtaaacttct 96
Query: 474 ttagctatgtcctttgaaacaatatatcctggtccatgcgcccagggaggataactctcc 533
|| |||||||||| || ||||| || ||||||||||| ||||| || |||||||||||
Sbjct: 95 tttgctatgtcctcagatacaatgtaccctggtccatgtgcccatgggggataactctct 36
Query: 534 tcaggccattcctcaggggttatgtaccacttgct 568
|||||||||||||| | |||||||||||||||||
Sbjct: 35 tcaggccattcctctgaagttatgtaccacttgct 1
>gb|CD892843.1|CD892843 G118.122B24F010726 G118 Triticum aestivum cDNA clone G118122B24,
mRNA sequence
Length = 682
Score = 272 bits (137), Expect = 2e-071
Identities = 294/345 (85%), Gaps = 1/345 (0%)
Strand = Plus / Minus
Query: 234 ttgcaacatgttcctcgttttgttttctgaaactgatcccagaggcacatcatatccctt 293
|||||||| ||||||| ||||||||||| || | ||||||||||||||||| | ||||
Sbjct: 368 ttgcaacagtttcctcgctttgttttctggaatttgtcccagaggcacatcatctgcctt 309
Query: 294 ggttcttggtaatgagcaatcacatagccatcctcgcatccttcaaccaaaatcctccca 353
|| || ||||| || |||| |||||| |||||||| || ||||| ||||| ||||| ||
Sbjct: 308 ggctcctggtagtgggcaaccacatacccatcctcacagccttccaccaagatccttccg 249
Query: 354 tcattctcatacttgacatccaagccatccttcttcatctcattgatccatattcccatt 413
|| |||| || ||||||| ||||| ||||||| ||||||||||||||||||||||||
Sbjct: 248 tcgttctggtatgtgacatcaaagccttccttctccatctcattgatccatattcccatc 189
Query: 414 gcgacatcctccagcttgaacatctttaactccccactcttgtgtttcctgtaaacttct 473
|| ||||||||||||||||||||||||| |||||| || |||||||||||||||||||||
Sbjct: 188 gccacatcctccagcttgaacatctttagctcccctcttttgtgtttcctgtaaacttct 129
Query: 474 ttagctatgtcctttgaaacaatata-tcctggtccatgcgcccagggaggataactctc 532
|| ||||| |||| || ||||| || ||||||||||| |||| || |||||||||||
Sbjct: 128 tttgctatatcctgagatacaatgtacccctggtccatgtgcccctgggggataactctc 69
Query: 533 ctcaggccattcctcaggggttatgtaccacttgctatacggatc 577
|||||||||||||| | |||||||||| |||||||||||||||
Sbjct: 68 ttcaggccattcctctgaagttatgtaccccttgctatacggatc 24
>gb|BQ838089.1|BQ838089 WHE2906_D08_G16ZS Wheat aluminum-stressed root tip cDNA library
Triticum aestivum cDNA clone WHE2906_D08_G16, mRNA
sequence
Length = 760
Score = 258 bits (130), Expect = 4e-067
Identities = 268/314 (85%)
Strand = Plus / Plus
Query: 234 ttgcaacatgttcctcgttttgttttctgaaactgatcccagaggcacatcatatccctt 293
|||||||| ||||||| ||||||||||| || | ||||||||||||||||| | ||||
Sbjct: 445 ttgcaacagtttcctcgctttgttttctggaatttgtcccagaggcacatcatctgcctt 504
Query: 294 ggttcttggtaatgagcaatcacatagccatcctcgcatccttcaaccaaaatcctccca 353
|| || ||||| || |||| |||||| |||||||| || ||||| ||||| ||||| ||
Sbjct: 505 ggctcctggtagtgggcaaccacatacccatcctcacagccttccaccaagatccttccg 564
Query: 354 tcattctcatacttgacatccaagccatccttcttcatctcattgatccatattcccatt 413
|| |||| ||| ||||||| | ||| |||||| |||||||||||||||||||||||||
Sbjct: 565 tcgttctggtacgtgacatcaatgccttccttcctcatctcattgatccatattcccatc 624
Query: 414 gcgacatcctccagcttgaacatctttaactccccactcttgtgtttcctgtaaacttct 473
|| ||||||||||||||||||||||||| |||||| || |||||||||||| ||||||||
Sbjct: 625 gccacatcctccagcttgaacatctttagctcccctcttttgtgtttcctggaaacttct 684
Query: 474 ttagctatgtcctttgaaacaatatatcctggtccatgcgcccagggaggataactctcc 533
|| |||||||||| || ||||| || ||||||||||| ||||| || |||||||| ||
Sbjct: 685 tttgctatgtcctcagatacaatgtaccctggtccatgtgcccatgggggataactttct 744
Query: 534 tcaggccattcctc 547
||||||||||||||
Sbjct: 745 tcaggccattcctc 758
>gb|CD490341.1|CD490341 WHE2496_A12_A24ZT Triticum monococcum DV92 early reproductive apex
cDNA library Triticum monococcum cDNA clone
WHE2496_A12_A24, mRNA sequence
Length = 710
Score = 236 bits (119), Expect = 1e-060
Identities = 236/275 (85%)
Strand = Plus / Plus
Query: 234 ttgcaacatgttcctcgttttgttttctgaaactgatcccagaggcacatcatatccctt 293
|||||||| ||||||| ||||||||||| || | ||||||||||||||||| | ||||
Sbjct: 436 ttgcaacagtttcctcgctttgttttctggaatttgtcccagaggcacatcatctgcctt 495
Query: 294 ggttcttggtaatgagcaatcacatagccatcctcgcatccttcaaccaaaatcctccca 353
|| || ||||| || |||| |||||| |||||||| || ||||| ||||| ||||| ||
Sbjct: 496 ggctcctggtagtgggcaaccacatacccatcctcacagccttccaccaagatccttccg 555
Query: 354 tcattctcatacttgacatccaagccatccttcttcatctcattgatccatattcccatt 413
|| |||| ||| ||||||| ||||| |||||| |||||||||||||||||||||||||
Sbjct: 556 tcgttctggtacgtgacatcaaagccttccttcctcatctcattgatccatattcccatc 615
Query: 414 gcgacatcctccagcttgaacatctttaactccccactcttgtgtttcctgtaaacttct 473
|| ||||||||||||||||||||||||| |||||| || |||||||||||||||||||||
Sbjct: 616 gccacatcctccagcttgaacatctttagctcccctcttttgtgtttcctgtaaacttct 675
Query: 474 ttagctatgtcctttgaaacaatatatcctggtcc 508
|| |||||||||| || ||||| || ||||||||
Sbjct: 676 tttgctatgtcctcagatacaatgtaccctggtcc 710
>gb|BF200163.1|BF200163 WHE2252_F12_K24ZE Triticum monococcum vegetative apex cDNA library
Triticum monococcum cDNA clone WHE2252_F12_K24, mRNA
sequence
Length = 462
Score = 234 bits (118), Expect = 5e-060
Identities = 172/190 (90%)
Strand = Plus / Minus
Query: 388 tcatctcattgatccatattcccattgcgacatcctccagcttgaacatctttaactccc 447
||||||||||||||||||||||||| || ||||||||||||||||||||||||| |||||
Sbjct: 461 tcatctcattgatccatattcccatcgccacatcctccagcttgaacatctttagctccc 402
Query: 448 cactcttgtgtttcctgtaaacttctttagctatgtcctttgaaacaatatatcctggtc 507
| || ||||||||||||||||||||||| |||||||||| || ||||| || |||||||
Sbjct: 401 ctcttttgtgtttcctgtaaacttcttttgctatgtcctcagatacaatgtaccctggtc 342
Query: 508 catgcgcccagggaggataactctcctcaggccattcctcaggggttatgtaccacttgc 567
|||| ||||| || ||||||||||| |||||||||||||| | ||||||||||||||||
Sbjct: 341 catgtgcccatgggggataactctcttcaggccattcctctgaagttatgtaccacttgc 282
Query: 568 tatacggatc 577
||||||||||
Sbjct: 281 tatacggatc 272
>gb|CD892844.1|CD892844 G118.122B24R010926 G118 Triticum aestivum cDNA clone G118122B24,
mRNA sequence
Length = 627
Score = 111 bits (56), Expect = 5e-023
Identities = 158/192 (82%)
Strand = Plus / Plus
Query: 244 ttcctcgttttgttttctgaaactgatcccagaggcacatcatatcccttggttcttggt 303
||||||| || |||||||| || || ||||||||||||||||| | ||| || || ||||
Sbjct: 436 ttcctcgcttggttttctggaattggtcccagaggcacatcatctgcctgggctcctggt 495
Query: 304 aatgagcaatcacatagccatcctcgcatccttcaaccaaaatcctcccatcattctcat 363
| | |||| |||||| |||||||| || ||||| ||||| ||||| || || ||| |
Sbjct: 496 agggggcaaccacatacccatcctcacagccttccaccaagatccttccgtcgttcgggt 555
Query: 364 acttgacatccaagccatccttcttcatctcattgatccatattcccattgcgacatcct 423
| ||||||| ||||| ||||||| |||||||| ||||||||||||||| || |||||||
Sbjct: 556 atgtgacatcaaagccttccttctccatctcatggatccatattcccatcgccacatcct 615
Query: 424 ccagcttgaaca 435
|||||| |||||
Sbjct: 616 ccagctggaaca 627
>gb|CD919729.1|CD919729 G608.114G08F010911 G608 Triticum aestivum cDNA clone G608114G08,
mRNA sequence
Length = 457
Score = 87.7 bits (44), Expect = 8e-016
Identities = 80/92 (86%)
Strand = Plus / Minus
Query: 416 gacatcctccagcttgaacatctttaactccccactcttgtgtttcctgtaaacttcttt 475
|||||||||||||||||| |||||| |||||| || |||||||||||||||||||||||
Sbjct: 109 gacatcctccagcttgaaaatcttttgctcccctcttttgtgtttcctgtaaacttcttt 50
Query: 476 agctatgtcctttgaaacaatatatcctggtc 507
||||| |||| | ||||| ||||||||||
Sbjct: 49 tgctatatcctgacatacaatttatcctggtc 18
Score = 44.1 bits (22), Expect = 0.010
Identities = 37/42 (88%)
Strand = Plus / Minus
Query: 352 catcattctcatacttgacatccaagccatccttcttcatct 393
|||| ||||||||||||||||| |||| || ||||||||||
Sbjct: 156 catcgttctcatacttgacatcaaagctttcattcttcatct 115
>gb|CA648276.1|CA648276 wre1n.pk0132.f9 wre1n Triticum aestivum cDNA clone wre1n.pk0132.f9
5' end, mRNA sequence
Length = 603
Score = 73.8 bits (37), Expect = 1e-011
Identities = 103/125 (82%)
Strand = Plus / Plus
Query: 274 agaggcacatcatatcccttggttcttggtaatgagcaatcacatagccatcctcgcatc 333
||||||||||||| | |||||| || | ||| || |||| ||||| |||||||| || |
Sbjct: 181 agaggcacatcatctgccttggctccttgtagtgggcaactacatacccatcctcacagc 240
Query: 334 cttcaaccaaaatcctcccatcattctcatacttgacatccaagccatccttcttcatct 393
|||| ||||| ||||| |||| ||||| ||||||||||| ||||| || |||| |||||
Sbjct: 241 cttccaccaacatccttgcatcgttctcgtacttgacatcaaagccttcattctacatct 300
Query: 394 cattg 398
|||||
Sbjct: 301 cattg 305
>gb|CD454892.1|CD454892 WHE1711_E11_J21ZT CS wheat heat stressed spike cDNA library
Triticum aestivum cDNA clone WHE1711_E11_J21, mRNA
sequence
Length = 746
Score = 73.8 bits (37), Expect = 1e-011
Identities = 103/125 (82%)
Strand = Plus / Plus
Query: 274 agaggcacatcatatcccttggttcttggtaatgagcaatcacatagccatcctcgcatc 333
||||||||||||| | |||||| || | ||| || |||| ||||| |||||||| || |
Sbjct: 217 agaggcacatcatctgccttggctccttgtagtgggcaactacatacccatcctcacagc 276
Query: 334 cttcaaccaaaatcctcccatcattctcatacttgacatccaagccatccttcttcatct 393
|||| ||||| ||||| |||| ||||| ||||||||||| ||||| || |||| |||||
Sbjct: 277 cttccaccaacatccttgcatcgttctcgtacttgacatcaaagccttcattctacatct 336
Query: 394 cattg 398
|||||
Sbjct: 337 cattg 341
>gb|BE492771.1|BE492771 WHE0564_E12_E12ZE Triticum monococcum vegetative apex cDNA library
Triticum monococcum cDNA clone WHE0564_E12_E12, mRNA
sequence
Length = 282
Score = 60.0 bits (30), Expect = 2e-007
Identities = 66/78 (84%)
Strand = Plus / Minus
Query: 321 ccatcctcgcatccttcaaccaaaatcctcccatcattctcatacttgacatccaagcca 380
|||||||| || | ||| ||||| ||||| |||||||||| ||||||||||| |||||
Sbjct: 84 ccatcctcacagctttccaccaacatccttgcatcattctcgtacttgacatcaaagcct 25
Query: 381 tccttcttcatctcattg 398
|| |||| ||||||||||
Sbjct: 24 tcattctacatctcattg 7
>gb|CD906061.1|CD906061 G468.103N08R010929 G468 Triticum aestivum cDNA clone G468103N08,
mRNA sequence
Length = 462
Score = 42.1 bits (21), Expect = 0.041
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 417 acatcctccagcttgaacatc 437
|||||||||||||||||||||
Sbjct: 275 acatcctccagcttgaacatc 295
>gb|CD903300.1|CD903300 G356.109O08F010919 G356 Triticum aestivum cDNA clone G356109O08,
mRNA sequence
Length = 742
Score = 40.1 bits (20), Expect = 0.16
Identities = 68/84 (80%)
Strand = Plus / Minus
Query: 315 acatagccatcctcgcatccttcaaccaaaatcctcccatcattctcatacttgacatcc 374
||||| |||||||| || ||||| | ||| ||| | |||| ||||| ||||||||||
Sbjct: 672 acatacccatcctcacagccttccagcaagatcgttgcatcgttctcgcacttgacatca 613
Query: 375 aagccatccttcttcatctcattg 398
||||| || | |||||||||||||
Sbjct: 612 aagccttcatccttcatctcattg 589
Database: Triticum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 3:01 PM
Number of letters in database: 367,240,239
Number of sequences in database: 636,343
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 108,939
Number of Sequences: 636343
Number of extensions: 108939
Number of successful extensions: 30863
Number of sequences better than 0.5: 12
Number of HSP's better than 0.5 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 30842
Number of HSP's gapped (non-prelim): 19
length of query: 577
length of database: 367,240,239
effective HSP length: 19
effective length of query: 558
effective length of database: 355,149,722
effective search space: 198173544876
effective search space used: 198173544876
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)