BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= QCH10g11.yg.2.1
         (632 letters)

Database: Triticum_nucl_with_EST.fasta 
           636,343 sequences; 367,240,239 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CA497978.1|CA497978  WHE3236_G04_N08ZT Wheat meiotic anth...    62   5e-008
gb|CA501322.1|CA501322  WHE4032_B11_D22ZT Wheat meiotic anth...    62   5e-008
gb|CF133118.1|CF133118  WHE4354_C05_F10ZT Wheat meiotic flor...    62   5e-008
gb|BQ902766.1|BQ902766  Ta03_01c07_R Ta03_AAFC_ECORC_Fusariu...    54   1e-005
gb|DR736451.1|DR736451  FGAS081821 Triticum aestivum FGAS: L...    50   2e-004

>gb|CA497978.1|CA497978 WHE3236_G04_N08ZT Wheat meiotic anther cDNA library Triticum
           aestivum cDNA clone WHE3236_G04_N08, mRNA sequence
          Length = 633

 Score = 61.9 bits (31), Expect = 5e-008
 Identities = 55/63 (87%)
 Strand = Plus / Minus

                                                                       
Query: 88  atcaaaaacatctgggtggccataatgcattctgactttaagtggatcagccagaacacg 147
           |||||| || |||||||| |||||||||||||| ||||| ||||||| ||  ||||||||
Sbjct: 500 atcaaacacgtctgggtgaccataatgcattctcactttcagtggattagaaagaacacg 441

              
Query: 148 ctg 150
           |||
Sbjct: 440 ctg 438



>gb|CA501322.1|CA501322 WHE4032_B11_D22ZT Wheat meiotic anther cDNA library Triticum
           aestivum cDNA clone WHE4032_B11_D22, mRNA sequence
          Length = 749

 Score = 61.9 bits (31), Expect = 5e-008
 Identities = 55/63 (87%)
 Strand = Plus / Minus

                                                                       
Query: 88  atcaaaaacatctgggtggccataatgcattctgactttaagtggatcagccagaacacg 147
           |||||| || |||||||| |||||||||||||| ||||| ||||||| ||  ||||||||
Sbjct: 693 atcaaacacgtctgggtgaccataatgcattctcactttcagtggattagaaagaacacg 634

              
Query: 148 ctg 150
           |||
Sbjct: 633 ctg 631



>gb|CF133118.1|CF133118 WHE4354_C05_F10ZT Wheat meiotic floret cDNA library Triticum
           aestivum cDNA clone WHE4354_C05_F10, mRNA sequence
          Length = 779

 Score = 61.9 bits (31), Expect = 5e-008
 Identities = 55/63 (87%)
 Strand = Plus / Minus

                                                                       
Query: 88  atcaaaaacatctgggtggccataatgcattctgactttaagtggatcagccagaacacg 147
           |||||| || |||||||| |||||||||||||| ||||| ||||||| ||  ||||||||
Sbjct: 111 atcaaacacgtctgggtgaccataatgcattctcactttcagtggattagaaagaacacg 52

              
Query: 148 ctg 150
           |||
Sbjct: 51  ctg 49



>gb|BQ902766.1|BQ902766 Ta03_01c07_R
           Ta03_AAFC_ECORC_Fusarium_graminearum_inoculated_wheat_he
           ads Triticum aestivum cDNA clone Ta03_01c07, mRNA
           sequence
          Length = 559

 Score = 54.0 bits (27), Expect = 1e-005
 Identities = 42/47 (89%)
 Strand = Plus / Plus

                                                          
Query: 88  atcaaaaacatctgggtggccataatgcattctgactttaagtggat 134
           |||||| || |||||||| |||||||||||||| ||||| |||||||
Sbjct: 301 atcaaacacgtctgggtgaccataatgcattctcactttcagtggat 347



>gb|DR736451.1|DR736451 FGAS081821 Triticum aestivum FGAS: Library 5 GATE 7 Triticum
           aestivum cDNA, mRNA sequence
          Length = 1087

 Score = 50.1 bits (25), Expect = 2e-004
 Identities = 75/92 (81%)
 Strand = Plus / Minus

                                                                       
Query: 2   cagttgaaaccagcaaaaatgtcctcactaatgttgattattcttgatgctttactgata 61
           ||||||||||| |  || ||||||||||| || ||||||| ||| ||||| ||||| | |
Sbjct: 110 cagttgaaacctgggaatatgtcctcactgatattgattactctcgatgccttacttaaa 51

                                           
Query: 62  ccacctcggcccaaaaaccaaagacgatcaaa 93
           ||||| |||  || ||||||||| || |||||
Sbjct: 50  ccaccacgggtcagaaaccaaaggcgntcaaa 19



  Database: Triticum_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  3:01 PM
  Number of letters in database: 367,240,239
  Number of sequences in database:  636,343
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 101,094
Number of Sequences: 636343
Number of extensions: 101094
Number of successful extensions: 24450
Number of sequences better than  0.5: 5
Number of HSP's better than  0.5 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 24442
Number of HSP's gapped (non-prelim): 8
length of query: 632
length of database: 367,240,239
effective HSP length: 19
effective length of query: 613
effective length of database: 355,149,722
effective search space: 217706779586
effective search space used: 217706779586
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)