BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QCA10g02.yg.2.1
(277 letters)
Database: Triticum_nucl_with_EST.fasta
636,343 sequences; 367,240,239 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BJ244687.1|BJ244687 BJ244687 Y. Ogihara unpublished cDNA... 145 2e-033
gb|BJ248938.1|BJ248938 BJ248938 Y. Ogihara unpublished cDNA... 145 2e-033
gb|BJ259967.1|BJ259967 BJ259967 Y. Ogihara unpublished cDNA... 101 2e-020
>gb|BJ244687.1|BJ244687 BJ244687 Y. Ogihara unpublished cDNA library, Wh_f Triticum
aestivum cDNA clone whf16c08 5', mRNA sequence
Length = 651
Score = 145 bits (73), Expect = 2e-033
Identities = 220/269 (81%)
Strand = Plus / Minus
Query: 1 actggcctcccatttccaacctgttctcccagagccttggacatgttaaggatatgcgca 60
|||||| |||||| || |||||||| |||| | |||| |||||||| || || ||||||
Sbjct: 504 actggcttcccatggcctacctgttcgcccaaaacctttgacatgtttagaatgtgcgca 445
Query: 61 agagctccatcgacaaactcttggaggtaaggccacagtgcttccttcttgaggtattta 120
|| ||||| || |||||||||||||||||||||||||| | |||||||||| ||| ||
Sbjct: 444 agggctccgtcaacaaactcttggaggtaaggccacagggactccttcttgatgtacttg 385
Query: 121 tcccgtggtccacacggtatgcgcacaatgtaggctccggcactctcacccatcccctct 180
| | | || || || |||||||||||||| || ||| | |||||||| ||||||||
Sbjct: 384 ttactctggccgcaagggatgcgcacaatgtatgccccgccgctctcaccgctcccctct 325
Query: 181 ccatcgttggaaccggagcataacatctccgtcggctcaccatagctccagtccacgtca 240
| |||| |||||||||| ||||||||| || ||||| || |||||||||||||||||
Sbjct: 324 gcgtcgtgggaaccggaggttaacatctctgttggctccccgtagctccagtccacgtcg 265
Query: 241 ggagatgacacttgacgagtgaagaggtc 269
|| ||||||||||| ||||| || |||||
Sbjct: 264 ggtgatgacacttggcgagtaaacaggtc 236
>gb|BJ248938.1|BJ248938 BJ248938 Y. Ogihara unpublished cDNA library, Wh_f Triticum
aestivum cDNA clone whf8l03 5', mRNA sequence
Length = 653
Score = 145 bits (73), Expect = 2e-033
Identities = 220/269 (81%)
Strand = Plus / Minus
Query: 1 actggcctcccatttccaacctgttctcccagagccttggacatgttaaggatatgcgca 60
|||||| |||||| || |||||||| |||| | |||| |||||||| || || ||||||
Sbjct: 335 actggcttcccatggcctacctgttcgcccaaaacctttgacatgtttagaatgtgcgca 276
Query: 61 agagctccatcgacaaactcttggaggtaaggccacagtgcttccttcttgaggtattta 120
|| ||||| || |||||||||||||||||||||||||| | |||||||||| ||| ||
Sbjct: 275 agggctccgtcaacaaactcttggaggtaaggccacagggactccttcttgatgtacttg 216
Query: 121 tcccgtggtccacacggtatgcgcacaatgtaggctccggcactctcacccatcccctct 180
| | | || || || |||||||||||||| || ||| | |||||||| ||||||||
Sbjct: 215 ttactctggccgcaagggatgcgcacaatgtatgccccgccgctctcaccgctcccctct 156
Query: 181 ccatcgttggaaccggagcataacatctccgtcggctcaccatagctccagtccacgtca 240
| |||| |||||||||| ||||||||| || ||||| || |||||||||||||||||
Sbjct: 155 gcgtcgtgggaaccggaggttaacatctctgttggctccccgtagctccagtccacgtcg 96
Query: 241 ggagatgacacttgacgagtgaagaggtc 269
|| ||||||||||| ||||| || |||||
Sbjct: 95 ggtgatgacacttggcgagtaaacaggtc 67
>gb|BJ259967.1|BJ259967 BJ259967 Y. Ogihara unpublished cDNA library, Wh_h Triticum
aestivum cDNA clone whh22p10 5', mRNA sequence
Length = 552
Score = 101 bits (51), Expect = 2e-020
Identities = 111/131 (84%)
Strand = Plus / Minus
Query: 139 atgcgcacaatgtaggctccggcactctcacccatcccctctccatcgttggaaccggag 198
|||||||||||||| || ||| | |||||||| |||||||| | |||| ||||||||||
Sbjct: 544 atgcgcacaatgtatgccccgccgctctcaccgctcccctctgcgtcgtgggaaccggag 485
Query: 199 cataacatctccgtcggctcaccatagctccagtccacgtcaggagatgacacttgacga 258
||||||||| || ||||| || ||||||||||||||||| || ||||||||||| |||
Sbjct: 484 gttaacatctctgttggctccccgtagctccagtccacgtcgggtgatgacacttggcga 425
Query: 259 gtgaagaggtc 269
|| || |||||
Sbjct: 424 gtaaacaggtc 414
Database: Triticum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 3:01 PM
Number of letters in database: 367,240,239
Number of sequences in database: 636,343
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 44,511
Number of Sequences: 636343
Number of extensions: 44511
Number of successful extensions: 12400
Number of sequences better than 0.5: 3
Number of HSP's better than 0.5 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 12395
Number of HSP's gapped (non-prelim): 5
length of query: 277
length of database: 367,240,239
effective HSP length: 19
effective length of query: 258
effective length of database: 355,149,722
effective search space: 91628628276
effective search space used: 91628628276
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)