BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QBTB.068P15F020924.3.1
(625 letters)
Database: Triticum_nucl_with_EST.fasta
636,343 sequences; 367,240,239 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CK161874.1|CK161874 FGAS014450 Triticum aestivum FGAS: L... 339 1e-091
gb|BF293133.1|BF293133 WHE2164_A01_A02ZS Triticum turgidum ... 325 2e-087
gb|CV771662.1|CV771662 FGAS066055 Triticum aestivum FGAS: L... 325 2e-087
gb|CK163391.1|CK163391 FGAS016017 Triticum aestivum FGAS: L... 293 7e-078
gb|CV760179.1|CV760179 FGAS054563 Triticum aestivum FGAS: L... 285 2e-075
gb|BQ295387.1|BQ295387 WHE2869_D07_H13ZS Wheat unstressed r... 94 1e-017
gb|BJ212102.1|BJ212102 BJ212102 Y. Ogihara unpublished cDNA... 46 0.003
gb|BJ305214.1|BJ305214 BJ305214 Y. Ogihara unpublished cDNA... 46 0.003
gb|CF132947.1|CF132947 WHE4352_C01_E02ZT Wheat meiotic flor... 46 0.003
gb|CK198626.1|CK198626 FGAS007113 Triticum aestivum FGAS: L... 46 0.003
gb|BJ212432.1|BJ212432 BJ212432 Y. Ogihara unpublished cDNA... 42 0.045
gb|CA620428.1|CA620428 wl1n.pk0055.g4 wl1n Triticum aestivu... 40 0.18
gb|CA631900.1|CA631900 wle1n.pk0055.g5 wle1n Triticum aesti... 40 0.18
gb|CA641025.1|CA641025 wre1n.pk0042.f4 wre1n Triticum aesti... 40 0.18
gb|CA644949.1|CA644949 wre1n.pk0085.d12 wre1n Triticum aest... 40 0.18
gb|CA655324.1|CA655324 wlm0.pk0014.e8 wlm0 Triticum aestivu... 40 0.18
gb|CA734053.1|CA734053 wde2f.pk001.k13 wde2f Triticum aesti... 40 0.18
>gb|CK161874.1|CK161874 FGAS014450 Triticum aestivum FGAS: Library 4 Gate 8 Triticum
aestivum cDNA, mRNA sequence
Length = 1110
Score = 339 bits (171), Expect = 1e-091
Identities = 381/451 (84%)
Strand = Plus / Plus
Query: 142 gagaagctgaagctgctcgtcggagtgctggccctgcagttccttctggcagggttccac 201
|||||| |||||||| || | || |||||||| ||||||||||| || || || ||||||
Sbjct: 126 gagaaggtgaagctgttcatgggcgtgctggcgctgcagttcctgctcgccggcttccac 185
Query: 202 atcgtctccagggcggcgctcaacatgggcatcagcgagatcgtgttcatggtgtacagg 261
|||||| | | || ||||||||||||||||||||| || |||| ||||| || ||| |
Sbjct: 186 atcgtcagccgcgccgcgctcaacatgggcatcagcaagctcgtcttcatcgtctaccgc 245
Query: 262 aacctcatctccctcgccttgctcgctccgttcgcctacttcctcgagaagaaagacagg 321
||| |||||||||||||| | ||||| || ||||||||||||||||||||||| ||| ||
Sbjct: 246 aacgtcatctccctcgccctcctcgcccccttcgcctacttcctcgagaagaaggaccgg 305
Query: 322 ccgccactcaccttctctttgctggtggagttcttcctgctagcgctgtgtgggataact 381
||||| ||||||||||| |||||| |||||||||| |||| ||||| ||||| ||
Sbjct: 306 ccgccgctcaccttctcgctgctggcggagttcttcgtgctggcgctcatcgggatcacg 365
Query: 382 gcgaaccagggcttctacctcctgggcctgtatcacctgtcaccaacctacgcctctgcg 441
||||||||||| |||||||| ||||| ||||| |||||||| || ||||||||||| |||
Sbjct: 366 gcgaaccaggggttctacctgctggggctgtaccacctgtcgccgacctacgcctccgcg 425
Query: 442 atacagaacaccgtccccgcgatcaccttcgtcatggccgctgtcctcaggctagagcag 501
|| ||||||| || || || ||||||||||| ||||||| |||||| |||| ||||||
Sbjct: 426 atccagaacatggtgccggccatcaccttcgtgctggccgcggtcctccggctggagcag 485
Query: 502 gtggacctgagcaggaggcatgggctggccaaggtggtgggcacggtggtgagcatcgga 561
||||||||| || || |||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 486 gtggacctgggccggcggcatggggtggccaaggtggtgggcacggtggtgagcatcggc 545
Query: 562 ggggccaccgtcataaccctgtacaagggcc 592
|| ||||| || || || || ||||||||||
Sbjct: 546 ggcgccacggtgatcacgctctacaagggcc 576
>gb|BF293133.1|BF293133 WHE2164_A01_A02ZS Triticum turgidum L. var. durum (durum wheat)
whole plant cDNA library Triticum turgidum cDNA clone
WHE2164_A01_A02, mRNA sequence
Length = 495
Score = 325 bits (164), Expect = 2e-087
Identities = 362/428 (84%)
Strand = Plus / Plus
Query: 142 gagaagctgaagctgctcgtcggagtgctggccctgcagttccttctggcagggttccac 201
|||||| |||||||| || | || |||||||| ||||||||||| || || || ||||||
Sbjct: 52 gagaaggtgaagctgttcatgggggtgctggcgctgcagttcctgctcgccggcttccac 111
Query: 202 atcgtctccagggcggcgctcaacatgggcatcagcgagatcgtgttcatggtgtacagg 261
|||||| | |||||||||||||||||||||||||| || |||| ||||| || ||| |
Sbjct: 112 atcgtcagccgggcggcgctcaacatgggcatcagcaagctcgtcttcatcgtctaccgc 171
Query: 262 aacctcatctccctcgccttgctcgctccgttcgcctacttcctcgagaagaaagacagg 321
||| |||||||||||||| | ||||| || ||||||||||||||||||||||| ||||||
Sbjct: 172 aacgtcatctccctcgccctcctcgcccccttcgcctacttcctcgagaagaaggacagg 231
Query: 322 ccgccactcaccttctctttgctggtggagttcttcctgctagcgctgtgtgggataact 381
||||| ||||||||||| |||||| |||||||||| |||| ||||| ||||| ||
Sbjct: 232 ccgccgctcaccttctcgctgctggcggagttcttcgtgctggcgctcatcgggatcacg 291
Query: 382 gcgaaccagggcttctacctcctgggcctgtatcacctgtcaccaacctacgcctctgcg 441
||||||||||| |||||||| ||||| ||||| |||||||| || |||||||| || |||
Sbjct: 292 gcgaaccaggggttctacctgctggggctgtaccacctgtcgccgacctacgcgtcggcg 351
Query: 442 atacagaacaccgtccccgcgatcaccttcgtcatggccgctgtcctcaggctagagcag 501
|| ||||||| || || || ||||||||||| |||| || || ||| |||| ||||||
Sbjct: 352 atccagaacatggtgccggccatcaccttcgtgctggcggccgtgctccggctggagcag 411
Query: 502 gtggacctgagcaggaggcatgggctggccaaggtggtgggcacggtggtgagcatcgga 561
||||||||| || || |||| ||| ||||||||||||||||||||||||||||||||||
Sbjct: 412 gtggacctgggccggcggcacggggtggccaaggtggtgggcacggtggtgagcatcggg 471
Query: 562 ggggccac 569
|| |||||
Sbjct: 472 ggcgccac 479
>gb|CV771662.1|CV771662 FGAS066055 Triticum aestivum FGAS: Library 2 Gate 3 Triticum
aestivum cDNA, mRNA sequence
Length = 874
Score = 325 bits (164), Expect = 2e-087
Identities = 362/428 (84%)
Strand = Plus / Plus
Query: 142 gagaagctgaagctgctcgtcggagtgctggccctgcagttccttctggcagggttccac 201
|||||| |||||||| || | || |||||||| ||||||||||| || || || ||||||
Sbjct: 226 gagaaggtgaagctgttcatgggggtgctggcgctgcagttcctgctcgccggcttccac 285
Query: 202 atcgtctccagggcggcgctcaacatgggcatcagcgagatcgtgttcatggtgtacagg 261
|||||| | |||||||||||||||||||||||||| || |||| ||||| || ||| |
Sbjct: 286 atcgtcagccgggcggcgctcaacatgggcatcagcaagctcgtcttcatcgtctaccgc 345
Query: 262 aacctcatctccctcgccttgctcgctccgttcgcctacttcctcgagaagaaagacagg 321
||| |||||||||||||| | ||||| || ||||||||||||||||||||||| ||||||
Sbjct: 346 aacgtcatctccctcgccctcctcgcccccttcgcctacttcctcgagaagaaggacagg 405
Query: 322 ccgccactcaccttctctttgctggtggagttcttcctgctagcgctgtgtgggataact 381
||||| ||||||||||| |||||| |||||||||| |||| ||||| ||||| ||
Sbjct: 406 ccgccgctcaccttctcgctgctggcggagttcttcgtgctggcgctcatcgggatcacg 465
Query: 382 gcgaaccagggcttctacctcctgggcctgtatcacctgtcaccaacctacgcctctgcg 441
||||||||||| |||||||| ||||| ||||| |||||||| || |||||||| || |||
Sbjct: 466 gcgaaccaggggttctacctgctggggctgtaccacctgtcgccgacctacgcgtcggcg 525
Query: 442 atacagaacaccgtccccgcgatcaccttcgtcatggccgctgtcctcaggctagagcag 501
|| ||||||| || || || ||||||||||| |||| || || ||| |||| ||||||
Sbjct: 526 atccagaacatggtgccggccatcaccttcgtgctggcggccgtgctccggctggagcag 585
Query: 502 gtggacctgagcaggaggcatgggctggccaaggtggtgggcacggtggtgagcatcgga 561
||||||||| || || |||| ||| ||||||||||||||||||||||||||||||||||
Sbjct: 586 gtggacctgggccggcggcacggggtggccaaggtggtgggcacggtggtgagcatcggg 645
Query: 562 ggggccac 569
|| |||||
Sbjct: 646 ggcgccac 653
>gb|CK163391.1|CK163391 FGAS016017 Triticum aestivum FGAS: Library 4 Gate 8 Triticum
aestivum cDNA, mRNA sequence
Length = 1028
Score = 293 bits (148), Expect = 7e-078
Identities = 375/451 (83%)
Strand = Plus / Plus
Query: 142 gagaagctgaagctgctcgtcggagtgctggccctgcagttccttctggcagggttccac 201
|||||| |||||||| || | || |||||||| ||||||||||| || || || ||||||
Sbjct: 139 gagaaggtgaagctgttcatgggcgtgctggcgctgcagttcctgctcgccggcttccac 198
Query: 202 atcgtctccagggcggcgctcaacatgggcatcagcgagatcgtgttcatggtgtacagg 261
||||| | | | || ||||||||||||||||||||| || |||| ||||| || ||| |
Sbjct: 199 atcgtttgccgcgccgcgctcaacatgggcatcagcaagctcgtcttcatcgtctaccgc 258
Query: 262 aacctcatctccctcgccttgctcgctccgttcgcctacttcctcgagaagaaagacagg 321
||| |||||||||||||| | |||| || | ||||||| ||||||||||||| ||| ||
Sbjct: 259 aacgtcatctccctcgccctcctcggcccctgcgcctacatcctcgagaagaaggaccgg 318
Query: 322 ccgccactcaccttctctttgctggtggagttcttcctgctagcgctgtgtgggataact 381
||||| ||||||||||| |||||| ||||| || | ||| ||||| ||||| ||
Sbjct: 319 ccgccgctcaccttctcgctgctggcggagtactncgagctggcgctcatcgggatcacg 378
Query: 382 gcgaaccagggcttctacctcctgggcctgtatcacctgtcaccaacctacgcctctgcg 441
||||||||||| |||||||| ||||| ||||| |||||||| || ||||||||||| |||
Sbjct: 379 gcgaaccaggggttctacctgctggggctgtaccacctgtcgccgacctacgcctccgcg 438
Query: 442 atacagaacaccgtccccgcgatcaccttcgtcatggccgctgtcctcaggctagagcag 501
|| ||||||| || || || ||||||||||| ||||||| |||||| |||| ||||||
Sbjct: 439 atccagaacatggtgccggccatcaccttcgtgctggccgcggtcctccggctggagcag 498
Query: 502 gtggacctgagcaggaggcatgggctggccaaggtggtgggcacggtggtgagcatcgga 561
||||||||| || || |||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 499 gtggacctgggccggcggcatggggtggccaaggtggtgggcacggtggtgagcatcggc 558
Query: 562 ggggccaccgtcataaccctgtacaagggcc 592
|| ||||| || || || || ||||||||||
Sbjct: 559 ggcgccacggtgatcacgctctacaagggcc 589
>gb|CV760179.1|CV760179 FGAS054563 Triticum aestivum FGAS: Library 2 Gate 3 Triticum
aestivum cDNA, mRNA sequence
Length = 855
Score = 285 bits (144), Expect = 2e-075
Identities = 357/428 (83%)
Strand = Plus / Plus
Query: 142 gagaagctgaagctgctcgtcggagtgctggccctgcagttccttctggcagggttccac 201
|||||| |||||||| || | || |||||||| ||||||||||| || || || ||||||
Sbjct: 209 gagaaggtgaagctgttcatgggggtgctggcgctgcagttcctgctcgccggcttccac 268
Query: 202 atcgtctccagggcggcgctcaacatgggcatcagcgagatcgtgttcatggtgtacagg 261
|||||| | |||||||||||||||||||||||||| || |||| ||||| || ||| |
Sbjct: 269 atcgtcagccgggcggcgctcaacatgggcatcagcaagctcgtcttcatcgtctaccgc 328
Query: 262 aacctcatctccctcgccttgctcgctccgttcgcctacttcctcgagaagaaagacagg 321
||| |||||||||||||| | ||||| || ||||||||||||||| | ||||| ||||||
Sbjct: 329 aacgtcatctccctcgccctcctcgcccccttcgcctacttcctccacaagaaggacagg 388
Query: 322 ccgccactcaccttctctttgctggtggagttcttcctgctagcgctgtgtgggataact 381
||||| ||||||||||| |||||| |||||||||| |||| ||||| ||||| ||
Sbjct: 389 ccgccgctcaccttctcgctgctggcggagttcttcgtgctggcgctcatcgggatcacg 448
Query: 382 gcgaaccagggcttctacctcctgggcctgtatcacctgtcaccaacctacgcctctgcg 441
||||||||||| |||||||| ||||| ||||| |||||||| || |||||||| || |||
Sbjct: 449 gcgaaccaggggttctacctgctggggctgtaccacctgtcgccgacctacgcgtcggcg 508
Query: 442 atacagaacaccgtccccgcgatcaccttcgtcatggccgctgtcctcaggctagagcag 501
|| ||||||| || || || ||||||||||| |||| || || ||| |||| |||||
Sbjct: 509 atccagaacatggtgccggccatcaccttcgtgctggcggccgtgctccggctggagcaa 568
Query: 502 gtggacctgagcaggaggcatgggctggccaaggtggtgggcacggtggtgagcatcgga 561
||||||||| || || |||| ||| ||||||||| ||||||||| ||||||||||||||
Sbjct: 569 gtggacctgggccggcggcacggggtggccaaggcggtgggcaccgtggtgagcatcggg 628
Query: 562 ggggccac 569
|| |||||
Sbjct: 629 ggcgccac 636
>gb|BQ295387.1|BQ295387 WHE2869_D07_H13ZS Wheat unstressed root tip cDNA library Triticum
aestivum cDNA clone WHE2869_D07_H13, mRNA sequence
Length = 740
Score = 93.7 bits (47), Expect = 1e-017
Identities = 80/91 (87%)
Strand = Plus / Plus
Query: 502 gtggacctgagcaggaggcatgggctggccaaggtggtgggcacggtggtgagcatcgga 561
||||||||| || || |||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 12 gtggacctgggccggcggcatggggtggccaaggtggtgggcacggtggtgagcatcggc 71
Query: 562 ggggccaccgtcataaccctgtacaagggcc 592
|| ||||| || || || || ||||||||||
Sbjct: 72 ggcgccacggtgatcacgctctacaagggcc 102
>gb|BJ212102.1|BJ212102 BJ212102 Y. Ogihara unpublished cDNA library, Wh Triticum aestivum
cDNA clone wh34m21 5', mRNA sequence
Length = 519
Score = 46.1 bits (23), Expect = 0.003
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 292 ttcgcctacttcctcgagaagaa 314
|||||||||||||||||||||||
Sbjct: 298 ttcgcctacttcctcgagaagaa 320
Score = 44.1 bits (22), Expect = 0.011
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 385 aaccagggcttctacctcctgggcct 410
|||||||||||||||||||| |||||
Sbjct: 391 aaccagggcttctacctcctcggcct 416
>gb|BJ305214.1|BJ305214 BJ305214 Y. Ogihara unpublished cDNA library, Wh_yd Triticum
aestivum cDNA clone whyd29d21 5', mRNA sequence
Length = 535
Score = 46.1 bits (23), Expect = 0.003
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 292 ttcgcctacttcctcgagaagaa 314
|||||||||||||||||||||||
Sbjct: 303 ttcgcctacttcctcgagaagaa 325
Score = 44.1 bits (22), Expect = 0.011
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 385 aaccagggcttctacctcctgggcct 410
|||||||||||||||||||| |||||
Sbjct: 396 aaccagggcttctacctcctcggcct 421
>gb|CF132947.1|CF132947 WHE4352_C01_E02ZT Wheat meiotic floret cDNA library Triticum
aestivum cDNA clone WHE4352_C01_E02, mRNA sequence
Length = 698
Score = 46.1 bits (23), Expect = 0.003
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 292 ttcgcctacttcctcgagaagaa 314
|||||||||||||||||||||||
Sbjct: 389 ttcgcctacttcctcgagaagaa 411
Score = 44.1 bits (22), Expect = 0.011
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 385 aaccagggcttctacctcctgggcct 410
|||||||||||||||||||| |||||
Sbjct: 482 aaccagggcttctacctcctcggcct 507
>gb|CK198626.1|CK198626 FGAS007113 Triticum aestivum FGAS: Library 3 Gate 6 Triticum
aestivum cDNA, mRNA sequence
Length = 828
Score = 46.1 bits (23), Expect = 0.003
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 292 ttcgcctacttcctcgagaagaa 314
|||||||||||||||||||||||
Sbjct: 399 ttcgcctacttcctcgagaagaa 421
Score = 44.1 bits (22), Expect = 0.011
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 385 aaccagggcttctacctcctgggcct 410
|||||||||||||||||||| |||||
Sbjct: 492 aaccagggcttctacctcctcggcct 517
>gb|BJ212432.1|BJ212432 BJ212432 Y. Ogihara unpublished cDNA library, Wh Triticum aestivum
cDNA clone wh17h12 5', mRNA sequence
Length = 287
Score = 42.1 bits (21), Expect = 0.045
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 217 gcgctcaacatgggcatcagc 237
|||||||||||||||||||||
Sbjct: 202 gcgctcaacatgggcatcagc 222
>gb|CA620428.1|CA620428 wl1n.pk0055.g4 wl1n Triticum aestivum cDNA clone wl1n.pk0055.g4 5'
end, mRNA sequence
Length = 430
Score = 40.1 bits (20), Expect = 0.18
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 401 tcctgggcctgtatcacctgtcaccaacctac 432
|||| |||||||| |||||||||||||||||
Sbjct: 290 tcctcggcctgtactacctgtcaccaacctac 321
>gb|CA631900.1|CA631900 wle1n.pk0055.g5 wle1n Triticum aestivum cDNA clone
wle1n.pk0055.g5 5' end, mRNA sequence
Length = 459
Score = 40.1 bits (20), Expect = 0.18
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 20 gctactagctagctagcagc 39
||||||||||||||||||||
Sbjct: 7 gctactagctagctagcagc 26
>gb|CA641025.1|CA641025 wre1n.pk0042.f4 wre1n Triticum aestivum cDNA clone
wre1n.pk0042.f4 5' end, mRNA sequence
Length = 503
Score = 40.1 bits (20), Expect = 0.18
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 20 gctactagctagctagcagc 39
||||||||||||||||||||
Sbjct: 34 gctactagctagctagcagc 53
>gb|CA644949.1|CA644949 wre1n.pk0085.d12 wre1n Triticum aestivum cDNA clone
wre1n.pk0085.d12 5' end, mRNA sequence
Length = 514
Score = 40.1 bits (20), Expect = 0.18
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 20 gctactagctagctagcagc 39
||||||||||||||||||||
Sbjct: 7 gctactagctagctagcagc 26
>gb|CA655324.1|CA655324 wlm0.pk0014.e8 wlm0 Triticum aestivum cDNA clone wlm0.pk0014.e8 5'
end, mRNA sequence
Length = 542
Score = 40.1 bits (20), Expect = 0.18
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 79 gagctagctagctagcagct 98
||||||||||||||||||||
Sbjct: 150 gagctagctagctagcagct 131
>gb|CA734053.1|CA734053 wde2f.pk001.k13 wde2f Triticum aestivum cDNA clone
wde2f.pk001.k13 5' end, mRNA sequence
Length = 552
Score = 40.1 bits (20), Expect = 0.18
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 79 gagctagctagctagcagct 98
||||||||||||||||||||
Sbjct: 40 gagctagctagctagcagct 59
Database: Triticum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 3:01 PM
Number of letters in database: 367,240,239
Number of sequences in database: 636,343
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 174,966
Number of Sequences: 636343
Number of extensions: 174966
Number of successful extensions: 57232
Number of sequences better than 0.5: 17
Number of HSP's better than 0.5 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 57169
Number of HSP's gapped (non-prelim): 58
length of query: 625
length of database: 367,240,239
effective HSP length: 19
effective length of query: 606
effective length of database: 355,149,722
effective search space: 215220731532
effective search space used: 215220731532
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)