BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QBTB.063O07F020916.3.1
(657 letters)
Database: Triticum_nucl_with_EST.fasta
636,343 sequences; 367,240,239 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CA726959.1|CA726959 wde1f.pk002.i6 wde1f Triticum aestiv... 317 5e-085
gb|CN011632.1|CN011632 WHE3886_E10_J20ZS Wheat Fusarium gra... 307 5e-082
gb|BE590753.1|BE590753 WHE0857_E09_J17ZS Wheat 20-45 DAP sp... 299 1e-079
gb|CA620221.1|CA620221 wl1n.pk0053.e8 wl1n Triticum aestivu... 272 3e-071
gb|CA729809.1|CA729809 wip1c.pk002.e13 wip1c Triticum aesti... 107 1e-021
gb|CD866533.1|CD866533 AZO2.103L11F001123 AZO2 Triticum aes... 105 4e-021
gb|BF201700.1|BF201700 WHE1774_F01_L02ZS Wheat pre-anthesis... 62 5e-008
gb|CA709305.1|CA709305 wdk2c.pk012.l9 wdk2c Triticum aestiv... 50 2e-004
gb|CA623691.1|CA623691 wl1n.pk0112.e10 wl1n Triticum aestiv... 48 8e-004
>gb|CA726959.1|CA726959 wde1f.pk002.i6 wde1f Triticum aestivum cDNA clone wde1f.pk002.i6 5'
end, mRNA sequence
Length = 623
Score = 317 bits (160), Expect = 5e-085
Identities = 265/300 (88%)
Strand = Plus / Plus
Query: 291 aatatatgggctgatcttggcatttcatgggaggttctgaagatgacgagccaccctcaa 350
|||||||||||||| |||||||||||||||||||| ||||||||| || ||||||||||
Sbjct: 212 aatatatgggctgactttggcatttcatgggaggttttgaagatgatgaaccaccctcaa 271
Query: 351 aacgcgcaagaacatcctcagtagaatctgcaagtttaccagactgtttctcgttttcga 410
||||||||||| ||||||||||||| || |||| ||||||||| |||||| | |||||
Sbjct: 272 aacgcgcaagagcatcctcagtagagtcagcaaatttaccagaaagtttctgttattcga 331
Query: 411 aattttccaatcctttgggaagtacaatggctagacctttgccttcccaagggaaagaag 470
||| || ||||||||| |||||||||||||||||||| ||||||| ||||||||||
Sbjct: 332 aatccattaaccctttgggaggtacaatggctagacctttggcttcccaggggaaagaag 391
Query: 471 ttatggttggttccaagggtgttattaagaaggaggaatttgttaggataatcaccaaaa 530
||||||||||||| || ||||||||||||| ||| |||||||| ||||||||||| |||
Sbjct: 392 ttatggttggttctaaaggtgttattaagagggacgaatttgtgaggataatcacaaaag 451
Query: 531 ctctgtatagtcttggatatgaaaaaagtggagcagttctggaggaggaatcagggatta 590
||||||||| |||||||||||||||||||||||| ||||| ||||| |||||||| ||||
Sbjct: 452 ctctgtatactcttggatatgaaaaaagtggagctgttcttgaggaagaatcaggtatta 511
>gb|CN011632.1|CN011632 WHE3886_E10_J20ZS Wheat Fusarium graminearum infected spike cDNA
library Triticum aestivum cDNA clone WHE3886_E10_J20,
mRNA sequence
Length = 649
Score = 307 bits (155), Expect = 5e-082
Identities = 266/303 (87%)
Strand = Plus / Plus
Query: 288 aaaaatatatgggctgatcttggcatttcatgggaggttctgaagatgacgagccaccct 347
|||| |||||||||||| |||||||||||||||||||| ||||||||| || |||||||
Sbjct: 179 aaaagtatatgggctgactttggcatttcatgggaggttttgaagatgatgaaccaccct 238
Query: 348 caaaacgcgcaagaacatcctcagtagaatctgcaagtttaccagactgtttctcgtttt 407
|||||||||||||| ||||||||||||| || |||| ||||||||| ||||| | ||
Sbjct: 239 caaaacgcgcaagagcatcctcagtagagtcggcaaatttaccagaaaatttctgttatt 298
Query: 408 cgaaattttccaatcctttgggaagtacaatggctagacctttgccttcccaagggaaag 467
|||||| || ||||||||| |||||||||||||||||||| ||||||| |||||||
Sbjct: 299 cgaaatccattaaccctttgggaggtacaatggctagacctttggcttcccaggggaaag 358
Query: 468 aagttatggttggttccaagggtgttattaagaaggaggaatttgttaggataatcacca 527
|||||||||||||||| || ||||||||||||| ||| |||||||| ||||||||||| |
Sbjct: 359 aagttatggttggttctaaaggtgttattaagagggacgaatttgtgaggataatcacaa 418
Query: 528 aaactctgtatagtcttggatatgaaaaaagtggagcagttctggaggaggaatcaggga 587
|| ||||||||| |||||||||||||||||||||||| ||||| ||||| |||||||| |
Sbjct: 419 aagctctgtatactcttggatatgaaaaaagtggagctgttcttgaggaagaatcaggta 478
Query: 588 tta 590
|||
Sbjct: 479 tta 481
>gb|BE590753.1|BE590753 WHE0857_E09_J17ZS Wheat 20-45 DAP spike cDNA library Triticum
aestivum cDNA clone WHE0857_E09_J17, mRNA sequence
Length = 548
Score = 299 bits (151), Expect = 1e-079
Identities = 259/295 (87%)
Strand = Plus / Plus
Query: 296 atgggctgatcttggcatttcatgggaggttctgaagatgacgagccaccctcaaaacgc 355
||||||||| |||||||||||||||||||| ||||||||| || |||||||||||||||
Sbjct: 1 atgggctgactttggcatttcatgggaggttttgaagatgatgaaccaccctcaaaacgc 60
Query: 356 gcaagaacatcctcagtagaatctgcaagtttaccagactgtttctcgttttcgaaattt 415
|||||| ||||||||||||| || |||| ||||||||| ||||| | ||||||||
Sbjct: 61 gcaagagcatcctcagtagagtcggcaaatttaccagaaaatttctgttattcgaaatcc 120
Query: 416 tccaatcctttgggaagtacaatggctagacctttgccttcccaagggaaagaagttatg 475
|| ||||||||| |||||||||||||||||||| ||||||| |||||||||||||||
Sbjct: 121 attaaccctttgggaggtacaatggctagacctttggcttcccaggggaaagaagttatg 180
Query: 476 gttggttccaagggtgttattaagaaggaggaatttgttaggataatcaccaaaactctg 535
|||||||| || ||||||||||||| ||| |||||||| ||||||||||| ||| |||||
Sbjct: 181 gttggttctaaaggtgttattaagagggacgaatttgtgaggataatcacaaaagctctg 240
Query: 536 tatagtcttggatatgaaaaaagtggagcagttctggaggaggaatcagggatta 590
|||| |||||||||||||||||||||||| ||||| ||||| |||||||| ||||
Sbjct: 241 tatactcttggatatgaaaaaagtggagctgttcttgaggaagaatcaggtatta 295
>gb|CA620221.1|CA620221 wl1n.pk0053.e8 wl1n Triticum aestivum cDNA clone wl1n.pk0053.e8 5'
end, mRNA sequence
Length = 406
Score = 272 bits (137), Expect = 3e-071
Identities = 147/149 (98%), Gaps = 1/149 (0%)
Strand = Plus / Plus
Query: 65 tccctccctacgcatcctctccccctcgggcgctttccccacccaatccgaccgccgggg 124
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 1 tccctccctacgcatcctctccccctcga-cgctttccccacccaatccgaccgccgggg 59
Query: 125 cgggcgattccctggagattcggcgcggattcggggctcctctcggggtttctcggcgaa 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 60 cgggcgattccctggagattcggcgcggattcggggctcctctcggggtttctcggcgaa 119
Query: 185 tcagcggggatcgggactcccggctgaag 213
|||||||||||||||||||||||||||||
Sbjct: 120 tcagcggggatcgggactcccggctgaag 148
>gb|CA729809.1|CA729809 wip1c.pk002.e13 wip1c Triticum aestivum cDNA clone wip1c.pk002.e13
5' end, mRNA sequence
Length = 638
Score = 107 bits (54), Expect = 1e-021
Identities = 90/102 (88%)
Strand = Plus / Plus
Query: 282 gaagtgaaaaatatatgggctgatcttggcatttcatgggaggttctgaagatgacgagc 341
||||| || |||||||||||||| |||||||||||||||||||| ||||||||| || |
Sbjct: 423 gaagtaaagaatatatgggctgactttggcatttcatgggaggttttgaagatgatgaac 482
Query: 342 caccctcaaaacgcgcaagaacatcctcagtagaatctgcaa 383
| || |||||||| |||||| |||||||||||||||| ||||
Sbjct: 483 cgccatcaaaacgggcaagagcatcctcagtagaatcagcaa 524
Score = 56.0 bits (28), Expect = 3e-006
Identities = 36/39 (92%)
Strand = Plus / Plus
Query: 419 aatcctttgggaagtacaatggctagacctttgccttcc 457
|||||||||||| ||||||||||||| |||||| |||||
Sbjct: 560 aatcctttgggaggtacaatggctagncctttgacttcc 598
>gb|CD866533.1|CD866533 AZO2.103L11F001123 AZO2 Triticum aestivum cDNA clone AZO2103L11,
mRNA sequence
Length = 559
Score = 105 bits (53), Expect = 4e-021
Identities = 77/85 (90%)
Strand = Plus / Plus
Query: 506 gaatttgttaggataatcaccaaaactctgtatagtcttggatatgaaaaaagtggagca 565
|||||||| ||||||||||| ||| ||||||||| ||||||||||||||||||||||||
Sbjct: 6 gaatttgtgaggataatcacaaaagctctgtatactcttggatatgaaaaaagtggagct 65
Query: 566 gttctggaggaggaatcagggatta 590
||||| ||||| |||||||| ||||
Sbjct: 66 gttcttgaggaagaatcaggtatta 90
>gb|BF201700.1|BF201700 WHE1774_F01_L02ZS Wheat pre-anthesis spike cDNA library Triticum
aestivum cDNA clone WHE1774_F01_L02, mRNA sequence
Length = 590
Score = 61.9 bits (31), Expect = 5e-008
Identities = 53/59 (89%), Gaps = 1/59 (1%)
Strand = Plus / Plus
Query: 532 tctgtatagtcttggatatgaaaaaagtggagcagttctggaggaggaatcagggatta 590
|||||||| ||||||||||||||| |||||||| ||||| ||||| |||||||| ||||
Sbjct: 1 tctgtatactcttggatatgaaaa-agtggagctgttcttgaggaagaatcaggtatta 58
>gb|CA709305.1|CA709305 wdk2c.pk012.l9 wdk2c Triticum aestivum cDNA clone wdk2c.pk012.l9 5'
end, mRNA sequence
Length = 479
Score = 50.1 bits (25), Expect = 2e-004
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 282 gaagtgaaaaatatatgggctgatcttggcatttcatggga 322
||||| || |||||||||||||| ||||||||||||||||
Sbjct: 426 gaagtaaagaatatatgggctgactttggcatttcatggga 466
>gb|CA623691.1|CA623691 wl1n.pk0112.e10 wl1n Triticum aestivum cDNA clone wl1n.pk0112.e10
5' end, mRNA sequence
Length = 602
Score = 48.1 bits (24), Expect = 8e-004
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 480 gttccaagggtgttattaagaaggagga 507
||||||| ||||||||||||||||||||
Sbjct: 496 gttccaaaggtgttattaagaaggagga 523
Score = 40.1 bits (20), Expect = 0.19
Identities = 46/52 (88%), Gaps = 2/52 (3%)
Strand = Plus / Plus
Query: 256 ggagattgcataccatcaccttccctgaa-gt-gaaaaatatatgggctgat 305
||||||||||| ||||||| | || |||| || |||||||||||||||||||
Sbjct: 268 ggagattgcatgccatcacttcccttgaaagtngaaaaatatatgggctgat 319
Database: Triticum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 3:01 PM
Number of letters in database: 367,240,239
Number of sequences in database: 636,343
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 127,250
Number of Sequences: 636343
Number of extensions: 127250
Number of successful extensions: 36924
Number of sequences better than 0.5: 9
Number of HSP's better than 0.5 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 36900
Number of HSP's gapped (non-prelim): 21
length of query: 657
length of database: 367,240,239
effective HSP length: 19
effective length of query: 638
effective length of database: 355,149,722
effective search space: 226585522636
effective search space used: 226585522636
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)