BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= QAZ2b01.yg.2.1
         (541 letters)

Database: Triticum_nucl_with_EST.fasta 
           636,343 sequences; 367,240,239 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CA623472.1|CA623472  wl1n.pk0105.c2 wl1n Triticum aestivu...   204   5e-051
gb|CA621622.1|CA621622  wl1n.pk0075.g9 wl1n Triticum aestivu...   186   1e-045

>gb|CA623472.1|CA623472 wl1n.pk0105.c2 wl1n Triticum aestivum cDNA clone wl1n.pk0105.c2 5'
           end, mRNA sequence
          Length = 650

 Score =  204 bits (103), Expect = 5e-051
 Identities = 149/165 (90%), Gaps = 1/165 (0%)
 Strand = Plus / Plus

                                                                       
Query: 314 tcaggtcctaaatggagccatgaatgggaaagatggtagagttgattcaacaactaatgg 373
           |||||||||| |||||||||||||||| |||| |||||||||||| ||||||||||||||
Sbjct: 2   tcaggtcctacatggagccatgaatggcaaaggtggtagagttgagtcaacaactaatgg 61

                                                                       
Query: 374 tgccttcaatactctgagtgggtttgaagcagcannnngacgaaatagttggcaatattt 433
           ||||||||||||| ||||||||||||||||||||    ||||||||||||||||||||||
Sbjct: 62  tgccttcaatactttgagtgggtttgaagcagcagacagacgaaatagttggcaatattt 121

                                                        
Query: 434 tnngatgctcctctctgataaggagtccctttt-ggatgatcttg 477
           |    |||||||||| ||||||||||| ||||| |||||||||||
Sbjct: 122 taaactgctcctctccgataaggagtcacttttgggatgatcttg 166



>gb|CA621622.1|CA621622 wl1n.pk0075.g9 wl1n Triticum aestivum cDNA clone wl1n.pk0075.g9 5'
           end, mRNA sequence
          Length = 396

 Score =  186 bits (94), Expect = 1e-045
 Identities = 147/164 (89%), Gaps = 2/164 (1%)
 Strand = Plus / Plus

                                                                       
Query: 314 tcaggtcctaaatggagccatgaatgggaaagatggtagagttgattcaacaactaatgg 373
           |||||||||| |||||||||||||||| |||| |||||||||||| ||||||||||||||
Sbjct: 2   tcaggtcctacatggagccatgaatggcaaaggtggtagagttgagtcaacaactaatgg 61

                                                                       
Query: 374 tgccttcaatactctgagtgggtttgaagcagcannnngacgaaatagttggcaatattt 433
           ||||||||||||| ||||||||||||||||||||    ||||||||||||||||||||||
Sbjct: 62  tgccttcaatactttgagtgggtttgaagcagcagacagacgaaatagttggcaatattt 121

                                                       
Query: 434 tnngatgctcctct-ctgataaggagtcccttttggatgatctt 476
           |    ||||||||| | |||||||| || |||||||||||||||
Sbjct: 122 taaactgctcctctcccgataagga-tcacttttggatgatctt 164



  Database: Triticum_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  3:01 PM
  Number of letters in database: 367,240,239
  Number of sequences in database:  636,343
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 73,724
Number of Sequences: 636343
Number of extensions: 73724
Number of successful extensions: 18674
Number of sequences better than  0.5: 2
Number of HSP's better than  0.5 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 18671
Number of HSP's gapped (non-prelim): 2
length of query: 541
length of database: 367,240,239
effective HSP length: 19
effective length of query: 522
effective length of database: 355,149,722
effective search space: 185388154884
effective search space used: 185388154884
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)