BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QAS4f06.yg.3.1
(768 letters)
Database: Triticum_nucl_with_EST.fasta
636,343 sequences; 367,240,239 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CA626862.1|CA626862 wl1n.pk0147.d10 wl1n Triticum aestiv... 908 0.0
gb|CA619430.1|CA619430 wl1n.pk0051.b8 wl1n Triticum aestivu... 652 0.0
gb|CV766205.1|CV766205 FGAS060592 Triticum aestivum FGAS: L... 64 2e-008
gb|CA628593.1|CA628593 wle1n.pk0005.f7 wle1n Triticum aesti... 46 0.004
gb|CA648579.1|CA648579 wre1n.pk0135.h12 wre1n Triticum aest... 46 0.004
gb|AJ602600.1|AJ602600 AJ602600 T06 Triticum aestivum cDNA ... 40 0.22
>gb|CA626862.1|CA626862 wl1n.pk0147.d10 wl1n Triticum aestivum cDNA clone wl1n.pk0147.d10
5' end, mRNA sequence
Length = 585
Score = 908 bits (458), Expect = 0.0
Identities = 474/477 (99%), Gaps = 2/477 (0%)
Strand = Plus / Plus
Query: 28 ctctaatacacccaaagcaaatacgcacgcagtgatagccatggctcgtggcggatctgg 87
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ctctaatacacccaaagcaaatacgcacgcagtgatagccatggctcgtggcggatctgg 60
Query: 88 ttgccgtcttctcgccctgctcctagtcttgactgccttcaatggcagctttgcagctcg 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ttgccgtcttctcgccctgctcctagtcttgactgccttcaatggcagctttgcagctcg 120
Query: 148 acatctcttggacacagcagctgcgccagaggccacgcctgctcagccgtccattccagc 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 acatctcttggacacagcagctgcgccagaggccacgcctgctcagccgtccattccagc 180
Query: 208 ggttccaaccaaactgcctccagtgccgaccataccagcggttccaaccacgctgacgct 267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ggttccaaccaaactgcctccagtgccgaccataccagcggttccaaccacgctgacgct 240
Query: 268 gcctccaatgccttccattccggaggtccccaagatgacaatcccaccaatcccgtccat 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 gcctccaatgccttccattccggaggtccccaagatgacaatcccaccaatcccgtccat 300
Query: 328 tcctatcccaaagctagccctgccaccaacagctgctggcgcaatcccatctctcccaaa 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 tcctatcccaaagctagccctgccaccaacagctgctggcgcaatcccatctctcccaaa 360
Query: 388 cccggtggttccaaccaccgtacc-agctatttctgcagtcccggttaccctgccaccaa 446
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||
Sbjct: 361 cccggtggttccaaccaccgtaccaagctatttctgcagtcccggttaccctgcca-caa 419
Query: 447 tgccctcgattcccactaccttgccatccattccaactacgattccaacaacaatcc 503
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 420 tgccctcgattcccactaccttgccatccantccaactacgattccaacaacaatcc 476
>gb|CA619430.1|CA619430 wl1n.pk0051.b8 wl1n Triticum aestivum cDNA clone wl1n.pk0051.b8 5'
end, mRNA sequence
Length = 620
Score = 652 bits (329), Expect = 0.0
Identities = 424/446 (95%), Gaps = 10/446 (2%)
Strand = Plus / Plus
Query: 28 ctctaatacacccaaagcaaatacgcacgcagtgatagccatggctcgtggcggatctgg 87
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ctctaatacacccaaagcaaatacgcacgcagtgatagccatggctcgtggcggatctgg 60
Query: 88 ttgccgtcttctcgccctgctcctagtcttgactgccttcaatggcagctttgcagctcg 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ttgccgtcttctcgccctgctcctagtcttgactgccttcaatggcagctttgcagctcg 120
Query: 148 acatctcttggacacagcagctgcgccagaggccacgcctgctc-agccgtccattccag 206
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 121 acatctcttggacacagcagctgcgccagaggccacgcctgctcaagccgtccattccag 180
Query: 207 cggttccaaccaaactgcctccagtgccgaccatacca-gcggttccaaccacgctgacg 265
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 181 cggttccaaccaaactgcctccagtgccgaccataccangcggttccaaccacgctgacg 240
Query: 266 ctgcctccaatgccttccattccggaggtccccaagatgacaatcccaccaatcccgtcc 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 ctgcctccaatgccttccattccggaggtccccaagatgacaatcccaccaatcccgtcc 300
Query: 326 attcctatccc-aaagctagccctgccaccaacagctgctggcgcaatcccatctctccc 384
||||||||||| ||||||| |||||||| ||||||||||||| ||||| |||||||||||
Sbjct: 301 attcctatcccaaaagcta-ccctgcca-caacagctgctggngcaat-ccatctctccc 357
Query: 385 aaacccggtggttccaaccaccgtaccagctatttctgcagtcccggttaccctgccacc 444
||||| |||||||| ||| ||||||| | ||||| | | | ||||||| ||||| | |
Sbjct: 358 aaaccnggtggttcaaacaaccgtacnanctattccngaa--tccggtta-cctgcna-c 413
Query: 445 aatgccctcgattcccactaccttgc 470
||||||||||||||| ||||||||||
Sbjct: 414 aatgccctcgattccaactaccttgc 439
>gb|CV766205.1|CV766205 FGAS060592 Triticum aestivum FGAS: Library 2 Gate 3 Triticum
aestivum cDNA, mRNA sequence
Length = 856
Score = 63.9 bits (32), Expect = 2e-008
Identities = 79/94 (84%), Gaps = 3/94 (3%)
Strand = Plus / Plus
Query: 104 ctgctcctagtcttgactgccttcaatggcagctttgcagc---tcgacatctcttggac 160
|||||||||| ||| || |||||||||||||||| ||| || ||| | ||| ||||||
Sbjct: 181 ctgctcctagccttcacagccttcaatggcagctctgcggcatctcgtcctcttttggac 240
Query: 161 acagcagctgcgccagaggccacgcctgctcagc 194
|| |||||||| ||||||||||| || |||||||
Sbjct: 241 acggcagctgcaccagaggccacaccagctcagc 274
Score = 61.9 bits (31), Expect = 6e-008
Identities = 70/83 (84%)
Strand = Plus / Plus
Query: 431 gttaccctgccaccaatgccctcgattcccactaccttgccatccattccaactacgatt 490
|||||| |||||||||||||||| |||| | |||| | ||||||||||| | || ||
Sbjct: 466 gttaccatgccaccaatgccctcagttccaattaccattccatccattccgatcacaata 525
Query: 491 ccaacaacaatccctaccattcc 513
|||||||| ||||||||||||||
Sbjct: 526 ccaacaactatccctaccattcc 548
>gb|CA628593.1|CA628593 wle1n.pk0005.f7 wle1n Triticum aestivum cDNA clone wle1n.pk0005.f7
5' end, mRNA sequence
Length = 169
Score = 46.1 bits (23), Expect = 0.004
Identities = 64/77 (83%), Gaps = 3/77 (3%)
Strand = Plus / Plus
Query: 104 ctgctcctagtcttgactgccttcaatggcagctttgcag---ctcgacatctcttggac 160
|||||||||| ||| || |||||||||||||||| ||| | |||| | ||| ||||||
Sbjct: 64 ctgctcctagccttcacagccttcaatggcagctctgcggcgtctcgtcgtcttttggac 123
Query: 161 acagcagctgcgccaga 177
|| |||||||| |||||
Sbjct: 124 acggcagctgcaccaga 140
>gb|CA648579.1|CA648579 wre1n.pk0135.h12 wre1n Triticum aestivum cDNA clone
wre1n.pk0135.h12 5' end, mRNA sequence
Length = 309
Score = 46.1 bits (23), Expect = 0.004
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 540 ccccatccccacaaaccaccagcccttgaag 570
||||||| ||||||||||||||||| |||||
Sbjct: 101 ccccatctccacaaaccaccagcccatgaag 131
>gb|AJ602600.1|AJ602600 AJ602600 T06 Triticum aestivum cDNA clone A10_T06_plate_19, mRNA
sequence
Length = 379
Score = 40.1 bits (20), Expect = 0.22
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 192 agccgtccattccagcggttccaa 215
|||| |||||||||||||||||||
Sbjct: 287 agccctccattccagcggttccaa 310
Database: Triticum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 3:01 PM
Number of letters in database: 367,240,239
Number of sequences in database: 636,343
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 143,503
Number of Sequences: 636343
Number of extensions: 143503
Number of successful extensions: 39358
Number of sequences better than 0.5: 6
Number of HSP's better than 0.5 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 39331
Number of HSP's gapped (non-prelim): 11
length of query: 768
length of database: 367,240,239
effective HSP length: 19
effective length of query: 749
effective length of database: 355,149,722
effective search space: 266007141778
effective search space used: 266007141778
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)