BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QAM14e11.yg.2.1
(197 letters)
Database: Triticum_nucl_with_EST.fasta
636,343 sequences; 367,240,239 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BJ248938.1|BJ248938 BJ248938 Y. Ogihara unpublished cDNA... 216 4e-055
gb|BJ244687.1|BJ244687 BJ244687 Y. Ogihara unpublished cDNA... 88 3e-016
gb|CA484616.1|CA484616 WHE4308_F04_L08ZS Wheat meiotic anth... 38 0.21
>gb|BJ248938.1|BJ248938 BJ248938 Y. Ogihara unpublished cDNA library, Wh_f Triticum
aestivum cDNA clone whf8l03 5', mRNA sequence
Length = 653
Score = 216 bits (109), Expect = 4e-055
Identities = 172/193 (89%)
Strand = Plus / Minus
Query: 1 acaatccccactgttcatcaatctcctgccttgtgctggtgatgacaagctctgacgcat 60
||||||||||||| ||||| ||||||||||| ||||| || || |||||||||| || |
Sbjct: 607 acaatccccactgctcatcgatctcctgcctggtgctagtaatcacaagctctgctgcgt 548
Query: 61 ccagggccagctcctcaccctcgatacgcctcatgatcttgtatgttgaatcgatctcct 120
||| |||||||||||| ||||| |||||||||||||||||||| |||| ||||||||||
Sbjct: 547 ccaaggccagctcctccccctcaatacgcctcatgatcttgtaggttgcgtcgatctcct 488
Query: 121 ccttggacatgcgcccttgcttcaggatttgctccagcttgttcctcccaagtgagtgac 180
|||||||||| ||||||||| ||| || ||||||||||||||||||||||| |||||||
Sbjct: 487 ccttggacatacgcccttgcatcataatctgctccagcttgttcctcccaagcgagtgac 428
Query: 181 cagtgagcaccat 193
|||||||||||||
Sbjct: 427 cagtgagcaccat 415
>gb|BJ244687.1|BJ244687 BJ244687 Y. Ogihara unpublished cDNA library, Wh_f Triticum
aestivum cDNA clone whf16c08 5', mRNA sequence
Length = 651
Score = 87.7 bits (44), Expect = 3e-016
Identities = 62/68 (91%)
Strand = Plus / Minus
Query: 126 gacatgcgcccttgcttcaggatttgctccagcttgttcctcccaagtgagtgaccagtg 185
||||| ||||||||| ||| || ||||||||||||||||||||||| ||||||||||||
Sbjct: 651 gacatacgcccttgcatcataatctgctccagcttgttcctcccaagcgagtgaccagtg 592
Query: 186 agcaccat 193
||||||||
Sbjct: 591 agcaccat 584
>gb|CA484616.1|CA484616 WHE4308_F04_L08ZS Wheat meiotic anther cDNA library Triticum
aestivum cDNA clone WHE4308_F04_L08, mRNA sequence
Length = 388
Score = 38.2 bits (19), Expect = 0.21
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 111 tcgatctcctccttggaca 129
|||||||||||||||||||
Sbjct: 334 tcgatctcctccttggaca 316
Database: Triticum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 3:01 PM
Number of letters in database: 367,240,239
Number of sequences in database: 636,343
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 50,587
Number of Sequences: 636343
Number of extensions: 50587
Number of successful extensions: 16254
Number of sequences better than 0.5: 3
Number of HSP's better than 0.5 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 16251
Number of HSP's gapped (non-prelim): 3
length of query: 197
length of database: 367,240,239
effective HSP length: 18
effective length of query: 179
effective length of database: 355,786,065
effective search space: 63685705635
effective search space used: 63685705635
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)