BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QAI15h08.yg.2.1
(557 letters)
Database: Triticum_nucl_with_EST.fasta
636,343 sequences; 367,240,239 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CF133398.1|CF133398 WHE4357_E10_J19ZT Wheat meiotic flor... 347 5e-094
gb|BG606256.1|BG606256 WHE2962_F04_L08ZS Wheat dormant embr... 345 2e-093
gb|BJ248053.1|BJ248053 BJ248053 Y. Ogihara unpublished cDNA... 315 2e-084
gb|BU100218.1|BU100218 WHE3316_F04_L08ZS Chinese Spring whe... 76 3e-012
gb|BE417613.1|BE417613 MUG022.G12R990620 ITEC MUG Wheat Spi... 52 4e-005
gb|AJ873992.1|AJ873992 AJ873992 Triticum aestivum cv. Fidel... 40 0.16
>gb|CF133398.1|CF133398 WHE4357_E10_J19ZT Wheat meiotic floret cDNA library Triticum
aestivum cDNA clone WHE4357_E10_J19, mRNA sequence
Length = 760
Score = 347 bits (175), Expect = 5e-094
Identities = 398/473 (84%)
Strand = Plus / Minus
Query: 27 acaccagatggggtagaaattgcagaccatgggacatgaggcttgtttctgtatctgcaa 86
|||||||| ||||||| ||| ||||||||||| ||||| |||| | |||||||||||||
Sbjct: 556 acaccagacggggtagtaatagcagaccatggaacatggggctcgcttctgtatctgcat 497
Query: 87 accatatgatgctttctgaatggatcaccaaaatctagcatgcagatgtgcgatgatgag 146
| ||| ||||| ||||||||||||||||||||||| ||| ||||| |||| || | ||||
Sbjct: 496 atcatgtgatgatttctgaatggatcaccaaaatcaagcgtgcaggtgtgtgagggtgag 437
Query: 147 gggttgccaagaggaacttctgatccatacatgacaagagggttcgaaatgtttgtgaca 206
||| |||||||| ||||| || ||||||||||||||||| |||||| ||||||||||
Sbjct: 436 ggggcaccaagagggacttcagacccatacatgacaagaggattcgaatggtttgtgaca 377
Query: 207 tcataaacatttaccaccaattcctgattgccagctagctgcctcaacaaattttccact 266
||||||||||| ||||||| |||||||||||||||||||||| || ||||||||||||
Sbjct: 376 tcataaacattcaccaccagctcctgattgccagctagctgccgcagcaaattttccaca 317
Query: 267 aatgattctacatcaaatgctcccccaaggtatcctgcggtggcagcaacacgatcctcc 326
| ||| |||||||| || || || ||||| ||||| ||||| ||||| ||||||||||||
Sbjct: 316 agtgactctacatcgaaagcgcctccaagatatccggcggtagcagcgacacgatcctcc 257
Query: 327 tccttggcatcagaaggaagatccgcatgatagacaggaaaagtcaatacgacacccagg 386
|||||||||| | || || || || | |||||||| || |||| ||| || ||||||
Sbjct: 256 accttggcatccggggggaggtcgacaaggtagacagggaacgtcagtaccacgcccagg 197
Query: 387 tgattcgacatgagccggaatggtcgagtgagaactgccttccccgatgctcttgacctc 446
|| ||||||||||||| |||||| | ||||| || |||||||| | || || ||||||
Sbjct: 196 tggttcgacatgagcctgaatggcctggtgaggacggccttcccggtcgccctcgacctc 137
Query: 447 aaaatattctcacggtcctcctcgccnnacatcatgtcgagcccctcgatgta 499
| || ||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct: 136 aggatgttctcccggtcctcctcgccggacatcatgtcgagcccctcgatgta 84
>gb|BG606256.1|BG606256 WHE2962_F04_L08ZS Wheat dormant embryo cDNA library Triticum
aestivum cDNA clone WHE2962_F04_L08, mRNA sequence
Length = 528
Score = 345 bits (174), Expect = 2e-093
Identities = 333/386 (86%)
Strand = Plus / Minus
Query: 24 aagacaccagatggggtagaaattgcagaccatgggacatgaggcttgtttctgtatctg 83
||||||||||||||||||| ||| ||||||||||| ||||| |||| | |||||||||||
Sbjct: 386 aagacaccagatggggtagtaatagcagaccatggaacatggggctcgcttctgtatctg 327
Query: 84 caaaccatatgatgctttctgaatggatcaccaaaatctagcatgcagatgtgcgatgat 143
|| | ||| ||||| ||||||||||||||||||||||||||||||||| ||||||| |
Sbjct: 326 catatcatgtgatgatttctgaatggatcaccaaaatctagcatgcaggtgtgcgagggc 267
Query: 144 gaggggttgccaagaggaacttctgatccatacatgacaagagggttcgaaatgtttgtg 203
|||||| |||||||| ||||| || |||||||||||||||||||| ||| |||||||
Sbjct: 266 gagggggcaccaagagggacttcagacccatacatgacaagagggtttgaatggtttgtg 207
Query: 204 acatcataaacatttaccaccaattcctgattgccagctagctgcctcaacaaattttcc 263
|||||||||||||| ||||||| |||||||||||||||||||||| |||||||||||||
Sbjct: 206 acatcataaacattcaccaccagctcctgattgccagctagctgccgcaacaaattttcc 147
Query: 264 actaatgattctacatcaaatgctcccccaaggtatcctgcggtggcagcaacacgatcc 323
|| | ||| |||||||| || || || ||||||||||| ||||| |||||||||||||||
Sbjct: 146 acaagtgactctacatcgaaagcgcctccaaggtatccggcggtagcagcaacacgatcc 87
Query: 324 tcctccttggcatcagaaggaagatccgcatgatagacaggaaaagtcaatacgacaccc 383
||| |||||||||| | || || || || | |||||||| || |||| || || |||
Sbjct: 86 tccaccttggcatccggggggaggtcgacaaggtagacagggaacgtcagcaccacgccc 27
Query: 384 aggtgattcgacatgagccggaatgg 409
||||||||||||||||||| ||||||
Sbjct: 26 aggtgattcgacatgagcctgaatgg 1
>gb|BJ248053.1|BJ248053 BJ248053 Y. Ogihara unpublished cDNA library, Wh_f Triticum
aestivum cDNA clone whf4l08 5', mRNA sequence
Length = 459
Score = 315 bits (159), Expect = 2e-084
Identities = 384/459 (83%), Gaps = 1/459 (0%)
Strand = Plus / Minus
Query: 29 accagatggggtagaaattgcagaccatgggacatgaggcttgtttctgtatctgcaaac 88
|||||||||||||| ||| ||||||||||| ||||| |||| | ||||||||||||| |
Sbjct: 459 accagatggggtagtaatagcagaccatggaacatggggctcgcttctgtatctgcatat 400
Query: 89 catatgatgctttctgaatggatcaccaaaatctagcatgcagatgtgcgatgatgaggg 148
||| ||||| |||||||| |||||||||||||||||| ||||| |||| || | ||||||
Sbjct: 399 catgtgatgatttctgaacggatcaccaaaatctagcgtgcaggtgtgtgagggtgaggg 340
Query: 149 gttgccaagaggaacttctgatccatacatgacaagagggttcgaaatgtttgtgacatc 208
| |||||||| ||||| || ||||||||| ||||||| || ||| ||||||||||||
Sbjct: 339 ggcaccaagagggacttcagacccatacatgncaagaggatttgaatggtttgtgacatc 280
Query: 209 ataaacatttaccaccaattcctgattgccagctagctgcctcaacaaattttccactaa 268
||||||||| ||||||| |||||||||||||||||||||| ||||||||||||||| |
Sbjct: 279 ataaacattgaccaccagctcctgattgccagctagctgccgcaacaaattttccacaag 220
Query: 269 tgattctacatcaaatgctcccccaaggtatcctgcggtggcagcaacacgatcctcctc 328
||| | |||||| || || || ||||||||||| ||||| |||||||||||||||||| |
Sbjct: 219 tgactntacatcgaaagcgcctccaaggtatcccgcggtagcagcaacacgatcctccac 160
Query: 329 cttggcatcagaaggaagatccgcatgatagacaggaaaagtcaatacgacacccaggtg 388
||||||||| | ||||| || || | |||||||| || |||| || || ||||||||
Sbjct: 159 cttggcatccgggggaaggtcgacaaggtagacagggaacgtcagcaccacgcccaggtg 100
Query: 389 attcgacatgagccggaatggtcgagtgagaactgccttccccgatgctcttgacctcaa 448
||||||||||||| |||||| | ||||| || |||||||| | || || |||||||
Sbjct: 99 gttcgacatgagcctgaatggcctcgtgaggacggccttcccggtggccctggacctcag 40
Query: 449 aatattct-cacggtcctcctcgccnnacatcatgtcga 486
|| |||| | |||||||||||||| ||||||||||||
Sbjct: 39 gatgttctgcccggtcctcctcgccggacatcatgtcga 1
>gb|BU100218.1|BU100218 WHE3316_F04_L08ZS Chinese Spring wheat drought stressed root cDNA
library Triticum aestivum cDNA clone WHE3316_F04_L08,
mRNA sequence
Length = 686
Score = 75.8 bits (38), Expect = 3e-012
Identities = 56/62 (90%)
Strand = Plus / Minus
Query: 24 aagacaccagatggggtagaaattgcagaccatgggacatgaggcttgtttctgtatctg 83
||||||||||||||||||| ||| ||||||||||| ||||| |||| | |||||||||||
Sbjct: 180 aagacaccagatggggtagtaatagcagaccatggaacatggggctcgcttctgtatctg 121
Query: 84 ca 85
||
Sbjct: 120 ca 119
>gb|BE417613.1|BE417613 MUG022.G12R990620 ITEC MUG Wheat Spikelet Library Triticum aestivum
cDNA clone MUG022.G12, mRNA sequence
Length = 480
Score = 52.0 bits (26), Expect = 4e-005
Identities = 80/98 (81%)
Strand = Plus / Minus
Query: 198 tttgtgacatcataaacatttaccaccaattcctgattgccagctagctgcctcaacaaa 257
|||||||| ||||| ||||| |||| | |||||||||||||| || | |||| ||||
Sbjct: 415 tttgtgacgtcatacacattcaccaatatatcctgattgccagcaagtttactcagcaaa 356
Query: 258 ttttccactaatgattctacatcaaatgctcccccaag 295
|||||||| | ||| || |||||||| ||||| |||||
Sbjct: 355 ttttccacaagtgactccacatcaaaagctccaccaag 318
>gb|AJ873992.1|AJ873992 AJ873992 Triticum aestivum cv. Fidel leaf Triticum aestivum cDNA
clone RB_226.1, mRNA sequence
Length = 812
Score = 40.1 bits (20), Expect = 0.16
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 27 acaccagatggggtagaaattgcagaccatgg 58
|||||||| ||||||| ||| |||||||||||
Sbjct: 391 acaccagacggggtagtaatagcagaccatgg 360
Database: Triticum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 3:01 PM
Number of letters in database: 367,240,239
Number of sequences in database: 636,343
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 124,298
Number of Sequences: 636343
Number of extensions: 124298
Number of successful extensions: 44565
Number of sequences better than 0.5: 6
Number of HSP's better than 0.5 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 44552
Number of HSP's gapped (non-prelim): 11
length of query: 557
length of database: 367,240,239
effective HSP length: 19
effective length of query: 538
effective length of database: 355,149,722
effective search space: 191070550436
effective search space used: 191070550436
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)