BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QAF41c07.yg.2.1
(691 letters)
Database: Triticum_nucl_with_EST.fasta
636,343 sequences; 367,240,239 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BE498502.1|BE498502 WHE0967_A12_A23ZS Wheat pre-anthesis... 220 1e-055
gb|CA501219.1|CA501219 WHE4030_G09_M18ZT Wheat meiotic anth... 143 2e-032
gb|CF133118.1|CF133118 WHE4354_C05_F10ZT Wheat meiotic flor... 92 6e-017
gb|CA497978.1|CA497978 WHE3236_G04_N08ZT Wheat meiotic anth... 78 9e-013
gb|CA501322.1|CA501322 WHE4032_B11_D22ZT Wheat meiotic anth... 78 9e-013
gb|BJ268450.1|BJ268450 BJ268450 Y. Ogihara unpublished cDNA... 72 6e-011
gb|BQ902766.1|BQ902766 Ta03_01c07_R Ta03_AAFC_ECORC_Fusariu... 68 9e-010
gb|CL902576.1|CL902576 CSHC1951 1639HC library Triticum aes... 62 5e-008
gb|BJ269461.1|BJ269461 BJ269461 Y. Ogihara unpublished cDNA... 56 3e-006
gb|BE500826.1|BE500826 WHE0991-0994_B23_B23ZS Wheat pre-ant... 54 1e-005
gb|BQ246010.1|BQ246010 TaE15017C07R TaE15 Triticum aestivum... 54 1e-005
gb|CD925510.1|CD925510 G750.117H07F010711 G750 Triticum aes... 44 0.013
gb|DR736451.1|DR736451 FGAS081821 Triticum aestivum FGAS: L... 42 0.050
gb|DQ086485.1| Triticum aestivum putative 1,3-beta-glucan s... 42 0.050
gb|CZ888357.1|CZ888357 gy38a04.x1.b.screen Bread wheat meth... 40 0.20
gb|BQ743211.1|BQ743211 WHE4101_D09_G17ZS Wheat salt-stresse... 40 0.20
gb|BU099331.1|BU099331 WHE3306_C03_E06ZS Chinese Spring whe... 40 0.20
>gb|BE498502.1|BE498502 WHE0967_A12_A23ZS Wheat pre-anthesis spike cDNA library Triticum
aestivum cDNA clone WHE0967_A12_A23, mRNA sequence
Length = 559
Score = 220 bits (111), Expect = 1e-055
Identities = 184/211 (87%)
Strand = Plus / Minus
Query: 418 gaaattcttcaagtaaatttctcattttcattgcttcctccaagtagttatcctgattca 477
||||||||||||||| ||| |||| ||||||||| |||||||||||||||||||||||||
Sbjct: 467 gaaattcttcaagtanattcctcactttcattgcctcctccaagtagttatcctgattca 408
Query: 478 tatcgatcgtctgaactgcatctcctcgagtgaagattatggcatggttttggttctcag 537
||||||||||||| | ||||||||| ||||| || ||||| ||||| |||||||| ||||
Sbjct: 407 tatcgatcgtctgtattgcatctccacgagtaaaaattatagcatgattttggttttcag 348
Query: 538 gtntgccttcaccnagcttggggttcccaggcaatttaatgcagtatatttcttggtctt 597
|| | || ||||| |||||||||||| |||||| ||||||| ||||||||||||| ||||
Sbjct: 347 gtttcccctcaccaagcttggggttcncaggcagtttaatggagtatatttcttgatctt 288
Query: 598 tgccatgaacatcannctncacnagcttgga 628
| || |||| |||| || ||| ||||||||
Sbjct: 287 ttccgtgaatatcagccttcacgagcttgga 257
Score = 71.9 bits (36), Expect = 6e-011
Identities = 60/68 (88%)
Strand = Plus / Minus
Query: 318 gacataaatgacgccagcgaagagacactccccgtgaatacatgctccctcacacctagg 377
||||||||||| ||||||||||| ||||| ||||| || |||||||||| |||||| ||
Sbjct: 558 gacataaatgatgccagcgaagacacacttcccgtaaacacatgctcccgcacaccaaga 499
Query: 378 attgtggg 385
||||||||
Sbjct: 498 attgtggg 491
>gb|CA501219.1|CA501219 WHE4030_G09_M18ZT Wheat meiotic anther cDNA library Triticum
aestivum cDNA clone WHE4030_G09_M18, mRNA sequence
Length = 522
Score = 143 bits (72), Expect = 2e-032
Identities = 129/148 (87%)
Strand = Plus / Plus
Query: 1 acacatctcggctgagaacttgctcaccattgcctccagcaactttcccctcaaatagtg 60
|||| ||||| || ||||||||||| || || |||||||||||||||||||| || || |
Sbjct: 177 acacgtctcgactaagaacttgctcgccgttacctccagcaactttcccctcgaacaggg 236
Query: 61 caatttggttcaagccaacatcacgccctttccccacctggatatattcatggtgtgtga 120
|||| ||||| || ||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct: 237 caatctggtttaaaccaacatcacgtcctttcccaacctggatatattcatggtgtgtga 296
Query: 121 tgttcccttggcgcaaagtcgaattgaa 148
| || || ||||||| ||| ||||||||
Sbjct: 297 tattaccctggcgcagagttgaattgaa 324
>gb|CF133118.1|CF133118 WHE4354_C05_F10ZT Wheat meiotic floret cDNA library Triticum
aestivum cDNA clone WHE4354_C05_F10, mRNA sequence
Length = 779
Score = 91.7 bits (46), Expect = 6e-017
Identities = 202/254 (79%)
Strand = Plus / Minus
Query: 5 atctcggctgagaacttgctcaccattgcctccagcaactttcccctcaaatagtgcaat 64
||||| ||| |||||||| || || || ||||| |||||||| || ||||||||||| ||
Sbjct: 333 atctctgctaagaacttgttcgccgtttcctcccgcaacttttccttcaaatagtgcgat 274
Query: 65 ttggttcaagccaacatcacgccctttccccacctggatatattcatggtgtgtgatgtt 124
|| || | |||||||| | ||||| || ||||||||||| |||||||| || |||||
Sbjct: 273 ctgattaagcccaacatctcttcctttaccaacctggatatactcatggtgagttatgtt 214
Query: 125 cccttggcgcaaagtcgaattgaacccggcatatatatcttcgcttatattaatcactcg 184
|||||| |||| ||| || || ||||| ||| ||||||| ||||| ||||| || | ||
Sbjct: 213 cccttgacgcagagtagagttaaaccctgcaaatatatcctcgctgatattgatgatacg 154
Query: 185 agacgccttgctaatgccacctcgggttatgtgaaatatccgatcaaaaacatcaggatg 244
|||||||| || |||||||| | || || |||||||| | |||||| || || || ||
Sbjct: 153 ggacgccttacttatgccacccctcgtaatatgaaatattctatcaaacacgtctgggtg 94
Query: 245 tccatagtgcattc 258
||||| |||||||
Sbjct: 93 accataatgcattc 80
>gb|CA497978.1|CA497978 WHE3236_G04_N08ZT Wheat meiotic anther cDNA library Triticum
aestivum cDNA clone WHE3236_G04_N08, mRNA sequence
Length = 633
Score = 77.8 bits (39), Expect = 9e-013
Identities = 127/157 (80%)
Strand = Plus / Minus
Query: 420 aattcttcaagtaaatttctcattttcattgcttcctccaagtagttatcctgattcata 479
||||| ||||| | |||||||||||| | ||| ||||| || ||||||||||||||||||
Sbjct: 313 aattcctcaagcagatttctcattttgagtgcctcctcgaaatagttatcctgattcata 254
Query: 480 tcgatcgtctgaactgcatctcctcgagtgaagattatggcatggttttggttctcaggt 539
|| || || || || |||| ||| |||||||| |||| ||||||||||| || || |||
Sbjct: 253 tcaatggtttgtacggcatttccgcgagtgaatattacagcatggttttgattttcgggt 194
Query: 540 ntgccttcaccnagcttggggttcccaggcaatttaa 576
| || || || ||||| || || || ||||||||||
Sbjct: 193 ttaccctccccaagctttggattgccgggcaatttaa 157
Score = 67.9 bits (34), Expect = 9e-010
Identities = 130/162 (80%)
Strand = Plus / Minus
Query: 97 cctggatatattcatggtgtgtgatgttcccttggcgcaaagtcgaattgaacccggcat 156
|||||||||| |||||||| || ||||||||||| |||| ||| || || ||||| |||
Sbjct: 630 cctggatatactcatggtgagttatgttcccttgacgcagagtagagttaaaccctgcaa 571
Query: 157 atatatcttcgcttatattaatcactcgagacgccttgctaatgccacctcgggttatgt 216
||||||| ||||| ||||| || | || |||||||| || |||||||| | || || |
Sbjct: 570 atatatcctcgctgatattgatgatacgggacgccttacttatgccacccctcgtaatat 511
Query: 217 gaaatatccgatcaaaaacatcaggatgtccatagtgcattc 258
||||||| | |||||| || || || || ||||| |||||||
Sbjct: 510 gaaatattctatcaaacacgtctgggtgaccataatgcattc 469
>gb|CA501322.1|CA501322 WHE4032_B11_D22ZT Wheat meiotic anther cDNA library Triticum
aestivum cDNA clone WHE4032_B11_D22, mRNA sequence
Length = 749
Score = 77.8 bits (39), Expect = 9e-013
Identities = 127/157 (80%)
Strand = Plus / Minus
Query: 420 aattcttcaagtaaatttctcattttcattgcttcctccaagtagttatcctgattcata 479
||||| ||||| | |||||||||||| | ||| ||||| || ||||||||||||||||||
Sbjct: 506 aattcctcaagcagatttctcattttgagtgcctcctcgaaatagttatcctgattcata 447
Query: 480 tcgatcgtctgaactgcatctcctcgagtgaagattatggcatggttttggttctcaggt 539
|| || || || || |||| ||| |||||||| |||| ||||||||||| || || |||
Sbjct: 446 tcaatggtttgtacggcatttccgcgagtgaatattacagcatggttttgattttcgggt 387
Query: 540 ntgccttcaccnagcttggggttcccaggcaatttaa 576
| || || || ||||| || || || ||||||||||
Sbjct: 386 ttaccctccccaagctttggattgccgggcaatttaa 350
>gb|BJ268450.1|BJ268450 BJ268450 Y. Ogihara unpublished cDNA library, Wh_oh Triticum
aestivum cDNA clone whoh17b01 5', mRNA sequence
Length = 425
Score = 71.9 bits (36), Expect = 6e-011
Identities = 133/164 (81%), Gaps = 1/164 (0%)
Strand = Plus / Minus
Query: 5 atctcggctgagaacttgctcaccattgcctccagcaactttcccctcaaatagtgcaat 64
||||| ||| |||||||| || || || ||||| |||||||| || ||||||||||| ||
Sbjct: 163 atctctgctaagaacttgttcgccgtttcctcccgcaacttttccttcaaatagtgcgat 104
Query: 65 ttggttcaagccaacatcacgccctttccccacctggatatattcatggtgtgtgatgtt 124
|| || | |||||||| | ||||| || ||||||||||| |||||||| || |||||
Sbjct: 103 ctgattaagcccaacatctcttcctttaccaacctggatatactcatggtgagttatgtt 44
Query: 125 cccttggcgcaaagtcgaattgaacccggcatatatatcttcgc 168
|||||| |||| ||| || || ||||| ||| ||||||| ||||
Sbjct: 43 cccttgacgcagagtagagtt-aaccctgcaaatatatcctcgc 1
>gb|BQ902766.1|BQ902766 Ta03_01c07_R
Ta03_AAFC_ECORC_Fusarium_graminearum_inoculated_wheat_he
ads Triticum aestivum cDNA clone Ta03_01c07, mRNA
sequence
Length = 559
Score = 67.9 bits (34), Expect = 9e-010
Identities = 178/226 (78%)
Strand = Plus / Plus
Query: 33 cctccagcaactttcccctcaaatagtgcaatttggttcaagccaacatcacgccctttc 92
||||| |||||||| || ||||||||||| || || || | |||||||| | |||||
Sbjct: 107 cctcccgcaacttttccttcaaatagtgcgatctgattaagcccaacatctcttccttta 166
Query: 93 cccacctggatatattcatggtgtgtgatgttcccttggcgcaaagtcgaattgaacccg 152
|| ||||| ||||| |||||||| || ||||||||||| |||| ||| || || |||||
Sbjct: 167 ccaacctgaatatactcatggtgagttatgttcccttgacgcagagtagagttaaaccct 226
Query: 153 gcatatatatcttcgcttatattaatcactcgagacgccttgctaatgccacctcgggtt 212
||| ||||||| || || ||||| || | || |||||||| || |||||||| | ||
Sbjct: 227 gcaaatatatcctcactgatattgatgatacgggacgccttactgatgccacccctcgta 286
Query: 213 atgtgaaatatccgatcaaaaacatcaggatgtccatagtgcattc 258
|| |||||||| | |||||| || || || || ||||| |||||||
Sbjct: 287 atatgaaatattctatcaaacacgtctgggtgaccataatgcattc 332
Score = 60.0 bits (30), Expect = 2e-007
Identities = 54/62 (87%)
Strand = Plus / Plus
Query: 420 aattcttcaagtaaatttctcattttcattgcttcctccaagtagttatcctgattcata 479
||||| ||||| | |||||||||||| | ||| ||||| || ||||||||||||||||||
Sbjct: 488 aattcctcaagcagatttctcatttttagtgcctcctcgaaatagttatcctgattcata 547
Query: 480 tc 481
||
Sbjct: 548 tc 549
>gb|CL902576.1|CL902576 CSHC1951 1639HC library Triticum aestivum genomic clone
1639HC10K18, DNA sequence
Length = 728
Score = 61.9 bits (31), Expect = 5e-008
Identities = 77/91 (84%), Gaps = 1/91 (1%)
Strand = Plus / Plus
Query: 1 acacatctcggctgagaacttgctcaccattgcctccagcaactttcccctcaaatagtg 60
|||| ||||| || ||||||||||| || || ||||| ||||||||||||||||| || |
Sbjct: 488 acacgtctcgactcagaacttgctcgccgttacctccggcaactttcccctcaaacaggg 547
Query: 61 caatttggttcaagccaacatcacgcccttt 91
|||| ||||| || |||||||||| |||||
Sbjct: 548 caatctggtttaa-acaacatcacgtccttt 577
>gb|BJ269461.1|BJ269461 BJ269461 Y. Ogihara unpublished cDNA library, Wh_oh Triticum
aestivum cDNA clone whoh22b10 5', mRNA sequence
Length = 628
Score = 56.0 bits (28), Expect = 3e-006
Identities = 55/64 (85%)
Strand = Plus / Minus
Query: 1 acacatctcggctgagaacttgctcaccattgcctccagcaactttcccctcaaatagtg 60
|||| ||||| || ||||||||||| || || ||||| ||||||||||||||||| || |
Sbjct: 94 acacgtctcgactcagaacttgctcgccgttacctccggcaactttcccctcaaacaggg 35
Query: 61 caat 64
||||
Sbjct: 34 caat 31
>gb|BE500826.1|BE500826 WHE0991-0994_B23_B23ZS Wheat pre-anthesis spike cDNA library
Triticum aestivum cDNA clone WHE0991-0994_B23_B23, mRNA
sequence
Length = 364
Score = 54.0 bits (27), Expect = 1e-005
Identities = 48/55 (87%)
Strand = Plus / Minus
Query: 1 acacatctcggctgagaacttgctcaccattgcctccagcaactttcccctcaaa 55
|||| ||||| || ||||||||||| || || ||||| |||||||||||||||||
Sbjct: 60 acacgtctcgactcagaacttgctcgccgttacctccggcaactttcccctcaaa 6
>gb|BQ246010.1|BQ246010 TaE15017C07R TaE15 Triticum aestivum cDNA clone TaE15017C07R, mRNA
sequence
Length = 653
Score = 54.0 bits (27), Expect = 1e-005
Identities = 90/111 (81%)
Strand = Plus / Minus
Query: 5 atctcggctgagaacttgctcaccattgcctccagcaactttcccctcaaatagtgcaat 64
||||| ||| |||||||| || || || ||||| |||||||| || ||||||||||| ||
Sbjct: 118 atctctgctaagaacttgttcgccgtttcctcccgcaacttttccttcaaatagtgcgat 59
Query: 65 ttggttcaagccaacatcacgccctttccccacctggatatattcatggtg 115
|| || | |||||||| | ||||| || ||||||||||| ||||||||
Sbjct: 58 ctgattaagcccaacatctcttcctttaccaacctggatatactcatggtg 8
>gb|CD925510.1|CD925510 G750.117H07F010711 G750 Triticum aestivum cDNA clone G750117H07,
mRNA sequence
Length = 575
Score = 44.1 bits (22), Expect = 0.013
Identities = 43/50 (86%)
Strand = Plus / Minus
Query: 1 acacatctcggctgagaacttgctcaccattgcctccagcaactttcccc 50
|||| ||||| || ||||||||||| || || ||||| ||||||||||||
Sbjct: 61 acacgtctcgactcagaacttgctcgccgttacctccggcaactttcccc 12
>gb|DR736451.1|DR736451 FGAS081821 Triticum aestivum FGAS: Library 5 GATE 7 Triticum
aestivum cDNA, mRNA sequence
Length = 1087
Score = 42.1 bits (21), Expect = 0.050
Identities = 36/41 (87%)
Strand = Plus / Minus
Query: 75 ccaacatcacgccctttccccacctggatatattcatggtg 115
|||||||||||||| || || |||||||| || ||||||||
Sbjct: 176 ccaacatcacgccccttgccaacctggatgtactcatggtg 136
>gb|DQ086485.1| Triticum aestivum putative 1,3-beta-glucan synthase 8 (GSL8)
mRNA, partial cds
Length = 580
Score = 42.1 bits (21), Expect = 0.050
Identities = 48/57 (84%)
Strand = Plus / Minus
Query: 5 atctcggctgagaacttgctcaccattgcctccagcaactttcccctcaaatagtgc 61
||||| ||| |||||||| || || || ||||| |||||||| || |||||||||||
Sbjct: 74 atctctgctaagaacttgttcgccgtttcctcccgcaacttttccttcaaatagtgc 18
>gb|CZ888357.1|CZ888357 gy38a04.x1.b.screen Bread wheat methylation filtered library
(Bread_Wheat_F) Triticum aestivum genomic, DNA sequence
Length = 593
Score = 40.1 bits (20), Expect = 0.20
Identities = 44/52 (84%)
Strand = Plus / Minus
Query: 420 aattcttcaagtaaatttctcattttcattgcttcctccaagtagttatcct 471
||||| ||||| | |||||||||||| | ||| ||||| || ||||||||||
Sbjct: 558 aattcctcaagcagatttctcatttttagtgcctcctcgaaatagttatcct 507
>gb|BQ743211.1|BQ743211 WHE4101_D09_G17ZS Wheat salt-stressed root cDNA library Triticum
aestivum cDNA clone WHE4101_D09_G17, mRNA sequence
Length = 705
Score = 40.1 bits (20), Expect = 0.20
Identities = 92/116 (79%)
Strand = Plus / Minus
Query: 423 tcttcaagtaaatttctcattttcattgcttcctccaagtagttatcctgattcatatcg 482
|||| ||||| |||||||||||| ||||| ||||| || || ||||||||||| ||
Sbjct: 703 tcttgaagtacatttctcattttgtaagcttcttccaaataattgtcctgattcatgtca 644
Query: 483 atcgtctgaactgcatctcctcgagtgaagattatggcatggttttggttctcagg 538
||||| || | || ||||| || ||||| || || ||||||||||| || |||||
Sbjct: 643 atcgtttgtagggcctctccacgggtgaatataattgcatggttttgattttcagg 588
>gb|BU099331.1|BU099331 WHE3306_C03_E06ZS Chinese Spring wheat drought stressed root cDNA
library Triticum aestivum cDNA clone WHE3306_C03_E06,
mRNA sequence
Length = 646
Score = 40.1 bits (20), Expect = 0.20
Identities = 92/116 (79%)
Strand = Plus / Minus
Query: 423 tcttcaagtaaatttctcattttcattgcttcctccaagtagttatcctgattcatatcg 482
|||| ||||| |||||||||||| ||||| ||||| || || ||||||||||| ||
Sbjct: 497 tcttgaagtacatttctcattttgtaagcttcttccaaataattgtcctgattcatgtca 438
Query: 483 atcgtctgaactgcatctcctcgagtgaagattatggcatggttttggttctcagg 538
||||| || | || ||||| || ||||| || || ||||||||||| || |||||
Sbjct: 437 atcgtttgtagggcctctccacgggtgaatataattgcatggttttgattttcagg 382
Database: Triticum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 3:01 PM
Number of letters in database: 367,240,239
Number of sequences in database: 636,343
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 90,830
Number of Sequences: 636343
Number of extensions: 90830
Number of successful extensions: 24289
Number of sequences better than 0.5: 17
Number of HSP's better than 0.5 without gapping: 15
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 24267
Number of HSP's gapped (non-prelim): 22
length of query: 691
length of database: 367,240,239
effective HSP length: 19
effective length of query: 672
effective length of database: 355,149,722
effective search space: 238660613184
effective search space used: 238660613184
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)