BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QAF1g01.yg.2.1
(335 letters)
Database: Triticum_nucl_with_EST.fasta
636,343 sequences; 367,240,239 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CA501219.1|CA501219 WHE4030_G09_M18ZT Wheat meiotic anth... 143 9e-033
gb|CF133118.1|CF133118 WHE4354_C05_F10ZT Wheat meiotic flor... 86 2e-015
gb|BJ268450.1|BJ268450 BJ268450 Y. Ogihara unpublished cDNA... 72 3e-011
gb|CL902576.1|CL902576 CSHC1951 1639HC library Triticum aes... 62 3e-008
gb|BQ902766.1|BQ902766 Ta03_01c07_R Ta03_AAFC_ECORC_Fusariu... 62 3e-008
gb|CA497978.1|CA497978 WHE3236_G04_N08ZT Wheat meiotic anth... 62 3e-008
gb|BJ269461.1|BJ269461 BJ269461 Y. Ogihara unpublished cDNA... 56 2e-006
gb|BE500826.1|BE500826 WHE0991-0994_B23_B23ZS Wheat pre-ant... 54 6e-006
gb|BQ246010.1|BQ246010 TaE15017C07R TaE15 Triticum aestivum... 54 6e-006
gb|CD925510.1|CD925510 G750.117H07F010711 G750 Triticum aes... 44 0.006
gb|DR736451.1|DR736451 FGAS081821 Triticum aestivum FGAS: L... 42 0.023
gb|DQ086485.1| Triticum aestivum putative 1,3-beta-glucan s... 42 0.023
>gb|CA501219.1|CA501219 WHE4030_G09_M18ZT Wheat meiotic anther cDNA library Triticum
aestivum cDNA clone WHE4030_G09_M18, mRNA sequence
Length = 522
Score = 143 bits (72), Expect = 9e-033
Identities = 129/148 (87%)
Strand = Plus / Plus
Query: 1 acacatctcggctgagaacttgctcaccattgcctccagcaactttcccctcaaatagtg 60
|||| ||||| || ||||||||||| || || |||||||||||||||||||| || || |
Sbjct: 177 acacgtctcgactaagaacttgctcgccgttacctccagcaactttcccctcgaacaggg 236
Query: 61 caatttggttcaagccaacatcacgccctttccccacctggatatattcatggtgtgtga 120
|||| ||||| || ||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct: 237 caatctggtttaaaccaacatcacgtcctttcccaacctggatatattcatggtgtgtga 296
Query: 121 tgttcccttggcgcaaagtcgaattgaa 148
| || || ||||||| ||| ||||||||
Sbjct: 297 tattaccctggcgcagagttgaattgaa 324
>gb|CF133118.1|CF133118 WHE4354_C05_F10ZT Wheat meiotic floret cDNA library Triticum
aestivum cDNA clone WHE4354_C05_F10, mRNA sequence
Length = 779
Score = 85.7 bits (43), Expect = 2e-015
Identities = 139/171 (81%)
Strand = Plus / Minus
Query: 5 atctcggctgagaacttgctcaccattgcctccagcaactttcccctcaaatagtgcaat 64
||||| ||| |||||||| || || || ||||| |||||||| || ||||||||||| ||
Sbjct: 333 atctctgctaagaacttgttcgccgtttcctcccgcaacttttccttcaaatagtgcgat 274
Query: 65 ttggttcaagccaacatcacgccctttccccacctggatatattcatggtgtgtgatgtt 124
|| || | |||||||| | ||||| || ||||||||||| |||||||| || |||||
Sbjct: 273 ctgattaagcccaacatctcttcctttaccaacctggatatactcatggtgagttatgtt 214
Query: 125 cccttggcgcaaagtcgaattgaacccggcatatatatcttcgcttatatt 175
|||||| |||| ||| || || ||||| ||| ||||||| ||||| |||||
Sbjct: 213 cccttgacgcagagtagagttaaaccctgcaaatatatcctcgctgatatt 163
>gb|BJ268450.1|BJ268450 BJ268450 Y. Ogihara unpublished cDNA library, Wh_oh Triticum
aestivum cDNA clone whoh17b01 5', mRNA sequence
Length = 425
Score = 71.9 bits (36), Expect = 3e-011
Identities = 133/164 (81%), Gaps = 1/164 (0%)
Strand = Plus / Minus
Query: 5 atctcggctgagaacttgctcaccattgcctccagcaactttcccctcaaatagtgcaat 64
||||| ||| |||||||| || || || ||||| |||||||| || ||||||||||| ||
Sbjct: 163 atctctgctaagaacttgttcgccgtttcctcccgcaacttttccttcaaatagtgcgat 104
Query: 65 ttggttcaagccaacatcacgccctttccccacctggatatattcatggtgtgtgatgtt 124
|| || | |||||||| | ||||| || ||||||||||| |||||||| || |||||
Sbjct: 103 ctgattaagcccaacatctcttcctttaccaacctggatatactcatggtgagttatgtt 44
Query: 125 cccttggcgcaaagtcgaattgaacccggcatatatatcttcgc 168
|||||| |||| ||| || || ||||| ||| ||||||| ||||
Sbjct: 43 cccttgacgcagagtagagtt-aaccctgcaaatatatcctcgc 1
>gb|CL902576.1|CL902576 CSHC1951 1639HC library Triticum aestivum genomic clone
1639HC10K18, DNA sequence
Length = 728
Score = 61.9 bits (31), Expect = 3e-008
Identities = 77/91 (84%), Gaps = 1/91 (1%)
Strand = Plus / Plus
Query: 1 acacatctcggctgagaacttgctcaccattgcctccagcaactttcccctcaaatagtg 60
|||| ||||| || ||||||||||| || || ||||| ||||||||||||||||| || |
Sbjct: 488 acacgtctcgactcagaacttgctcgccgttacctccggcaactttcccctcaaacaggg 547
Query: 61 caatttggttcaagccaacatcacgcccttt 91
|||| ||||| || |||||||||| |||||
Sbjct: 548 caatctggtttaa-acaacatcacgtccttt 577
>gb|BQ902766.1|BQ902766 Ta03_01c07_R
Ta03_AAFC_ECORC_Fusarium_graminearum_inoculated_wheat_he
ads Triticum aestivum cDNA clone Ta03_01c07, mRNA
sequence
Length = 559
Score = 61.9 bits (31), Expect = 3e-008
Identities = 106/131 (80%)
Strand = Plus / Plus
Query: 33 cctccagcaactttcccctcaaatagtgcaatttggttcaagccaacatcacgccctttc 92
||||| |||||||| || ||||||||||| || || || | |||||||| | |||||
Sbjct: 107 cctcccgcaacttttccttcaaatagtgcgatctgattaagcccaacatctcttccttta 166
Query: 93 cccacctggatatattcatggtgtgtgatgttcccttggcgcaaagtcgaattgaacccg 152
|| ||||| ||||| |||||||| || ||||||||||| |||| ||| || || |||||
Sbjct: 167 ccaacctgaatatactcatggtgagttatgttcccttgacgcagagtagagttaaaccct 226
Query: 153 gcatatatatc 163
||| |||||||
Sbjct: 227 gcaaatatatc 237
>gb|CA497978.1|CA497978 WHE3236_G04_N08ZT Wheat meiotic anther cDNA library Triticum
aestivum cDNA clone WHE3236_G04_N08, mRNA sequence
Length = 633
Score = 61.9 bits (31), Expect = 3e-008
Identities = 67/79 (84%)
Strand = Plus / Minus
Query: 97 cctggatatattcatggtgtgtgatgttcccttggcgcaaagtcgaattgaacccggcat 156
|||||||||| |||||||| || ||||||||||| |||| ||| || || ||||| |||
Sbjct: 630 cctggatatactcatggtgagttatgttcccttgacgcagagtagagttaaaccctgcaa 571
Query: 157 atatatcttcgcttatatt 175
||||||| ||||| |||||
Sbjct: 570 atatatcctcgctgatatt 552
>gb|BJ269461.1|BJ269461 BJ269461 Y. Ogihara unpublished cDNA library, Wh_oh Triticum
aestivum cDNA clone whoh22b10 5', mRNA sequence
Length = 628
Score = 56.0 bits (28), Expect = 2e-006
Identities = 55/64 (85%)
Strand = Plus / Minus
Query: 1 acacatctcggctgagaacttgctcaccattgcctccagcaactttcccctcaaatagtg 60
|||| ||||| || ||||||||||| || || ||||| ||||||||||||||||| || |
Sbjct: 94 acacgtctcgactcagaacttgctcgccgttacctccggcaactttcccctcaaacaggg 35
Query: 61 caat 64
||||
Sbjct: 34 caat 31
>gb|BE500826.1|BE500826 WHE0991-0994_B23_B23ZS Wheat pre-anthesis spike cDNA library
Triticum aestivum cDNA clone WHE0991-0994_B23_B23, mRNA
sequence
Length = 364
Score = 54.0 bits (27), Expect = 6e-006
Identities = 48/55 (87%)
Strand = Plus / Minus
Query: 1 acacatctcggctgagaacttgctcaccattgcctccagcaactttcccctcaaa 55
|||| ||||| || ||||||||||| || || ||||| |||||||||||||||||
Sbjct: 60 acacgtctcgactcagaacttgctcgccgttacctccggcaactttcccctcaaa 6
>gb|BQ246010.1|BQ246010 TaE15017C07R TaE15 Triticum aestivum cDNA clone TaE15017C07R, mRNA
sequence
Length = 653
Score = 54.0 bits (27), Expect = 6e-006
Identities = 90/111 (81%)
Strand = Plus / Minus
Query: 5 atctcggctgagaacttgctcaccattgcctccagcaactttcccctcaaatagtgcaat 64
||||| ||| |||||||| || || || ||||| |||||||| || ||||||||||| ||
Sbjct: 118 atctctgctaagaacttgttcgccgtttcctcccgcaacttttccttcaaatagtgcgat 59
Query: 65 ttggttcaagccaacatcacgccctttccccacctggatatattcatggtg 115
|| || | |||||||| | ||||| || ||||||||||| ||||||||
Sbjct: 58 ctgattaagcccaacatctcttcctttaccaacctggatatactcatggtg 8
>gb|CD925510.1|CD925510 G750.117H07F010711 G750 Triticum aestivum cDNA clone G750117H07,
mRNA sequence
Length = 575
Score = 44.1 bits (22), Expect = 0.006
Identities = 43/50 (86%)
Strand = Plus / Minus
Query: 1 acacatctcggctgagaacttgctcaccattgcctccagcaactttcccc 50
|||| ||||| || ||||||||||| || || ||||| ||||||||||||
Sbjct: 61 acacgtctcgactcagaacttgctcgccgttacctccggcaactttcccc 12
>gb|DR736451.1|DR736451 FGAS081821 Triticum aestivum FGAS: Library 5 GATE 7 Triticum
aestivum cDNA, mRNA sequence
Length = 1087
Score = 42.1 bits (21), Expect = 0.023
Identities = 36/41 (87%)
Strand = Plus / Minus
Query: 75 ccaacatcacgccctttccccacctggatatattcatggtg 115
|||||||||||||| || || |||||||| || ||||||||
Sbjct: 176 ccaacatcacgccccttgccaacctggatgtactcatggtg 136
>gb|DQ086485.1| Triticum aestivum putative 1,3-beta-glucan synthase 8 (GSL8)
mRNA, partial cds
Length = 580
Score = 42.1 bits (21), Expect = 0.023
Identities = 48/57 (84%)
Strand = Plus / Minus
Query: 5 atctcggctgagaacttgctcaccattgcctccagcaactttcccctcaaatagtgc 61
||||| ||| |||||||| || || || ||||| |||||||| || |||||||||||
Sbjct: 74 atctctgctaagaacttgttcgccgtttcctcccgcaacttttccttcaaatagtgc 18
Database: Triticum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 3:01 PM
Number of letters in database: 367,240,239
Number of sequences in database: 636,343
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 33,068
Number of Sequences: 636343
Number of extensions: 33068
Number of successful extensions: 8500
Number of sequences better than 0.5: 12
Number of HSP's better than 0.5 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 8488
Number of HSP's gapped (non-prelim): 12
length of query: 335
length of database: 367,240,239
effective HSP length: 19
effective length of query: 316
effective length of database: 355,149,722
effective search space: 112227312152
effective search space used: 112227312152
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)