BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QAE37h07.yg.2.1
(642 letters)
Database: Triticum_nucl_with_EST.fasta
636,343 sequences; 367,240,239 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CV761327.1|CV761327 FGAS055715 Triticum aestivum FGAS: L... 377 e-103
gb|CV777984.1|CV777984 FGAS072392 Triticum aestivum FGAS: L... 357 6e-097
gb|AJ614924.1|AJ614924 AJ614924 Triticum turgidum subsp. du... 163 2e-038
gb|BJ269461.1|BJ269461 BJ269461 Y. Ogihara unpublished cDNA... 143 2e-032
gb|AJ611269.1|AJ611269 AJ611269 Triticum turgidum subsp. du... 137 1e-030
gb|CD927659.1|CD927659 GR45.102M21F010315 GR45 Triticum aes... 50 2e-004
gb|BQ239591.1|BQ239591 TaE05029A09R TaE05 Triticum aestivum... 46 0.003
gb|CA604015.1|CA604015 wr1.pk0033.a10 wr1 Triticum aestivum... 46 0.003
gb|CN010180.1|CN010180 WHE3867_F07_K13ZS Wheat Fusarium gra... 42 0.046
>gb|CV761327.1|CV761327 FGAS055715 Triticum aestivum FGAS: Library 2 Gate 3 Triticum
aestivum cDNA, mRNA sequence
Length = 871
Score = 377 bits (190), Expect = e-103
Identities = 376/452 (83%)
Strand = Plus / Minus
Query: 1 acantgccatactgaaacatgagaaatctannnctgnngattgtctcaagaatacgtcct 60
||| |||||||||| |||| ||||||||| || ||| |||||||| || |||||
Sbjct: 577 acaatgccatactggaacaggagaaatctgaggctcaggatagtctcaaggattcgtccc 518
Query: 61 ctgaatgtctggatatgcgcctgctcctcatcccaccaagattcccaactnnnnncaccc 120
|| || ||||||||||| ||||||||||| |||||||||||||||||||| | |||
Sbjct: 517 ctaaaggtctggatatgagcctgctcctcctcccaccaagattcccaactattttcgccc 458
Query: 121 tttacaccaactccacctttataaannnaccannntgtccagtcatcaaagtcctcaaca 180
||||||||||||||||||||||||| |||| |||||||||||||||||||||||||
Sbjct: 457 tttacaccaactccacctttataaaataaccaatttgtccagtcatcaaagtcctcaaca 398
Query: 181 gtcttttgccactcgaaaccagaagggttgaaaatgtaaggcgcgaaaagccaggacata 240
|| ||||||||||||||||||||||||||||||||||| ||||| ||||||||||| |||
Sbjct: 397 gttttttgccactcgaaaccagaagggttgaaaatgtatggcgcaaaaagccaggatata 338
Query: 241 acgaggaaccaactactgatagtaatcagaataaatgaagatgaaccgccttnnntgnnn 300
|| | || ||||||||||||||| | ||||||||| || ||||| ||||| | ||
Sbjct: 337 accatgatccaactactgatagtcaacagaataaaggacgatgacccgcccttcgtgtag 278
Query: 301 nnatatgcaatntnnncnatcaggaggagagcaacctcaagcgctttgacaaagtgactt 360
||| ||||| | | || || ||||||||||||||||||||||| |||||||| |||
Sbjct: 277 ccatacgcaatgtagacaataagcaggagagcaacctcaagcgctttcacaaagtggctt 218
Query: 361 nnagaatagagcctataattttcagcaaacnttatgtgccnnacaacaaaacctctnnna 420
|||||||||||||||||| ||||||||| ||||||| | ||||||||||||| |
Sbjct: 217 cgagaatagagcctataattgtcagcaaactttatgtggcgaacaacaaaacctcgtcca 158
Query: 421 gtagcacgatactttgcancnnnatgaaggat 452
|||||||||||||||||| | |||||||||
Sbjct: 157 gtagcacgatactttgcaccaccatgaaggat 126
>gb|CV777984.1|CV777984 FGAS072392 Triticum aestivum FGAS: Library 2 Gate 3 Triticum
aestivum cDNA, mRNA sequence
Length = 824
Score = 357 bits (180), Expect = 6e-097
Identities = 362/434 (83%), Gaps = 1/434 (0%)
Strand = Plus / Minus
Query: 1 acantgccatactgaaacatgagaaatctannnctgnngattgtctcaagaatacgtcct 60
||| |||||||||| |||| ||||||||| || ||| |||||||| || |||||
Sbjct: 547 acaatgccatactggaacaggagaaatctgaggctcaggatagtctcaaggattcgtccc 488
Query: 61 ctgaatgtctggatatgcgcctgctcctca-tcccaccaagattcccaactnnnnncacc 119
|| || ||||||||||| ||||||||||| |||||||||||||||||||| | ||
Sbjct: 487 ctaaaggtctggatatgagcctgctcctccctcccaccaagattcccaactattttcgcc 428
Query: 120 ctttacaccaactccacctttataaannnaccannntgtccagtcatcaaagtcctcaac 179
|||||||||||||||||||||||||| |||| ||||||||||||||||||||||||
Sbjct: 427 ctttacaccaactccacctttataaaataaccaatttgtccagtcatcaaagtcctcaac 368
Query: 180 agtcttttgccactcgaaaccagaagggttgaaaatgtaaggcgcgaaaagccaggacat 239
||| ||||||||||||||||||||||||||||||||||| || || ||||||||||| ||
Sbjct: 367 agttttttgccactcgaaaccagaagggttgaaaatgtatggagcaaaaagccaggatat 308
Query: 240 aacgaggaaccaactactgatagtaatcagaataaatgaagatgaaccgccttnnntgnn 299
||| | || ||||||||||||||| | |||||||||||| ||||| ||||| | ||
Sbjct: 307 aaccatgatccaactactgatagtcaacagaataaatgacgatgacccgcccttcgtgta 248
Query: 300 nnnatatgcaatntnnncnatcaggaggagagcaacctcaagcgctttgacaaagtgact 359
||| ||||| | | || || ||||||||||||||||||||||| |||||||| ||
Sbjct: 247 gccatacgcaatgtagacaataagcaggagagcaacctcaagcgctttcacaaagtggct 188
Query: 360 tnnagaatagagcctataattttcagcaaacnttatgtgccnnacaacaaaacctctnnn 419
| |||||||||||||||||| ||||||||| ||||||| | ||||||||||||||
Sbjct: 187 tcgagaatagagcctataattgtcagcaaactttatgtggcgaacaacaaaacctcttcc 128
Query: 420 agtagcacgatact 433
||||||||||||||
Sbjct: 127 agtagcacgatact 114
>gb|AJ614924.1|AJ614924 AJ614924 Triticum turgidum subsp. durum etiolated seedling 20 day
Triticum turgidum subsp. durum cDNA clone 10920R, mRNA
sequence
Length = 248
Score = 163 bits (82), Expect = 2e-038
Identities = 152/181 (83%)
Strand = Plus / Minus
Query: 1 acantgccatactgaaacatgagaaatctannnctgnngattgtctcaagaatacgtcct 60
||| |||||||||| |||| ||||||||| || ||| |||||||| || |||||
Sbjct: 182 acaatgccatactggaacaagagaaatctgaggctcaggatagtctcaaggattcgtccc 123
Query: 61 ctgaatgtctggatatgcgcctgctcctcatcccaccaagattcccaactnnnnncaccc 120
|| || ||||||||||| |||||||||||||||||||||||||||||||| | |||
Sbjct: 122 ctaaaagtctggatatgtgcctgctcctcatcccaccaagattcccaactattttcgccc 63
Query: 121 tttacaccaactccacctttataaannnaccannntgtccagtcatcaaagtcctcaaca 180
||||||||||||||||||||||||| |||| |||||||||||||||||||||||||
Sbjct: 62 tttacaccaactccacctttataaaataaccaatttgtccagtcatcaaagtcctcaaca 3
Query: 181 g 181
|
Sbjct: 2 g 2
>gb|BJ269461.1|BJ269461 BJ269461 Y. Ogihara unpublished cDNA library, Wh_oh Triticum
aestivum cDNA clone whoh22b10 5', mRNA sequence
Length = 628
Score = 143 bits (72), Expect = 2e-032
Identities = 111/128 (86%)
Strand = Plus / Minus
Query: 325 aggagagcaacctcaagcgctttgacaaagtgacttnnagaatagagcctataattttca 384
||||||||||||||||||||||| |||||||| ||| |||||||||||||||||| |||
Sbjct: 602 aggagagcaacctcaagcgctttcacaaagtggcttcgagaatagagcctataattgtca 543
Query: 385 gcaaacnttatgtgccnnacaacaaaacctctnnnagtagcacgatactttgcancnnna 444
|||||| ||||||| | ||||||||||||| ||||||||||||||||||| | |
Sbjct: 542 gcaaactttatgtggcgaacaacaaaacctcgtccagtagcacgatactttgcaccacca 483
Query: 445 tgaaggat 452
||||||||
Sbjct: 482 tgaaggat 475
>gb|AJ611269.1|AJ611269 AJ611269 Triticum turgidum subsp. durum etiolated seedling 20 day
Triticum turgidum subsp. durum cDNA clone 04551R, mRNA
sequence
Length = 500
Score = 137 bits (69), Expect = 1e-030
Identities = 167/208 (80%)
Strand = Plus / Minus
Query: 246 gaaccaactactgatagtaatcagaataaatgaagatgaaccgccttnnntgnnnnnata 305
|||||||||||||||||| | ||||||||| || ||||| ||||| | || |||
Sbjct: 495 gaaccaactactgatagtcaacagaataaaggacgatgacccgcccttcgtgtagccata 436
Query: 306 tgcaatntnnncnatcaggaggagagcaacctcaagcgctttgacaaagtgacttnnaga 365
||||| | | || || ||||||||||||||||||||||| |||||||| ||| |||
Sbjct: 435 agcaatgtagacaataagcaggagagcaacctcaagcgctttcacaaagtggcttcgaga 376
Query: 366 atagagcctataattttcagcaaacnttatgtgccnnacaacaaaacctctnnnagtagc 425
||| ||||||||||| ||||||||| ||||||| | ||||||||||||| ||||||
Sbjct: 375 atacagcctataattgtcagcaaactttatgtggcgaacaacaaaacctcgtccagtagc 316
Query: 426 acgatactttgcancnnnatgaaggatt 453
||||||||| ||| | ||||||||||
Sbjct: 315 acgatacttcgcaccaccatgaaggatt 288
>gb|CD927659.1|CD927659 GR45.102M21F010315 GR45 Triticum aestivum cDNA clone GR45102M21,
mRNA sequence
Length = 706
Score = 50.1 bits (25), Expect = 2e-004
Identities = 31/33 (93%)
Strand = Plus / Minus
Query: 182 tcttttgccactcgaaaccagaagggttgaaaa 214
|||| ||||||||||| ||||||||||||||||
Sbjct: 130 tcttctgccactcgaatccagaagggttgaaaa 98
>gb|BQ239591.1|BQ239591 TaE05029A09R TaE05 Triticum aestivum cDNA clone TaE05029A09R, mRNA
sequence
Length = 603
Score = 46.1 bits (23), Expect = 0.003
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 182 tcttttgccactcgaaaccagaagggttgaa 212
|||| ||||||||||| ||||||||||||||
Sbjct: 274 tcttctgccactcgaatccagaagggttgaa 244
>gb|CA604015.1|CA604015 wr1.pk0033.a10 wr1 Triticum aestivum cDNA clone wr1.pk0033.a10 5'
end, mRNA sequence
Length = 412
Score = 46.1 bits (23), Expect = 0.003
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 182 tcttttgccactcgaaaccagaagggttgaa 212
|||| ||||||||||| ||||||||||||||
Sbjct: 159 tcttctgccactcgaatccagaagggttgaa 129
>gb|CN010180.1|CN010180 WHE3867_F07_K13ZS Wheat Fusarium graminearum infected spike cDNA
library Triticum aestivum cDNA clone WHE3867_F07_K13,
mRNA sequence
Length = 684
Score = 42.1 bits (21), Expect = 0.046
Identities = 30/33 (90%)
Strand = Plus / Minus
Query: 182 tcttttgccactcgaaaccagaagggttgaaaa 214
|||| |||||||| || ||||||||||||||||
Sbjct: 406 tcttctgccactcaaatccagaagggttgaaaa 374
Database: Triticum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 3:01 PM
Number of letters in database: 367,240,239
Number of sequences in database: 636,343
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 59,988
Number of Sequences: 636343
Number of extensions: 59988
Number of successful extensions: 13673
Number of sequences better than 0.5: 9
Number of HSP's better than 0.5 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 13653
Number of HSP's gapped (non-prelim): 16
length of query: 642
length of database: 367,240,239
effective HSP length: 19
effective length of query: 623
effective length of database: 355,149,722
effective search space: 221258276806
effective search space used: 221258276806
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)