BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MAD56_a5f4.3.2
(1520 letters)
Database: Triticum_nucl_with_EST.fasta
636,343 sequences; 367,240,239 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BE499786.1|BE499786 WHE0975_C02_E03ZS Wheat pre-anthesis... 60 5e-007
gb|BF202848.1|BF202848 WHE1782_D05_G09ZS Wheat pre-anthesis... 60 5e-007
gb|BF202982.1|BF202982 WHE1768_A01_A02ZS Wheat pre-anthesis... 60 5e-007
gb|BF483674.1|BF483674 WHE2336_E06_J12ZS Wheat pre-anthesis... 60 5e-007
gb|BF484512.1|BF484512 WHE2324_E01_J02ZS Wheat pre-anthesis... 60 5e-007
gb|BG262817.1|BG262817 WHE0945_F04_K07ZS Wheat 5-15 DAP spi... 60 5e-007
gb|BJ269571.1|BJ269571 BJ269571 Y. Ogihara unpublished cDNA... 60 5e-007
gb|AL827075.1|AL827075 AL827075 p:638 Triticum aestivum cDN... 60 5e-007
gb|AL827241.1|AL827241 AL827241 p:638 Triticum aestivum cDN... 60 5e-007
gb|CA729968.1|CA729968 wip1c.pk002.j13 wip1c Triticum aesti... 60 5e-007
gb|CK161415.1|CK161415 FGAS013985 Triticum aestivum FGAS: L... 60 5e-007
gb|CK161416.1|CK161416 FGAS013986 Triticum aestivum FGAS: L... 60 5e-007
gb|BE442702.1|BE442702 WHE1103_G12_N23ZS Wheat etiolated se... 54 3e-005
gb|BE499849.1|BE499849 WHE0979_E07_I13ZS Wheat pre-anthesis... 54 3e-005
gb|BE586195.1|BE586195 Est7-4-5_H08_7C1sp6_064 KSU wheat Fu... 54 3e-005
gb|BM136117.1|BM136117 WHE2602_H11_O22ZS Wheat Fusarium gra... 54 3e-005
gb|BJ210585.1|BJ210585 BJ210585 Y. Ogihara unpublished cDNA... 54 3e-005
gb|BJ217811.1|BJ217811 BJ217811 Y. Ogihara unpublished cDNA... 54 3e-005
gb|BQ295215.1|BQ295215 WHE2867_E02_I03ZS Wheat unstressed r... 54 3e-005
gb|CD937517.1|CD937517 OV.107E03R010430 OV Triticum aestivu... 54 3e-005
gb|CB307588.1|CB307588 HFIG573 Hessian fly infested cDNA li... 54 3e-005
gb|CK206273.1|CK206273 FGAS017858 Triticum aestivum FGAS: L... 54 3e-005
gb|AJ613539.1|AJ613539 AJ613539 Triticum turgidum subsp. du... 54 3e-005
gb|AJ615244.1|AJ615244 AJ615244 Triticum turgidum subsp. du... 54 3e-005
gb|DN949106.1|DN949106 KUCD01_13_B10_T3 WSWR cDNA library T... 54 3e-005
gb|CD937490.1|CD937490 OV.107C11F010206 OV Triticum aestivu... 50 5e-004
gb|CD939071.1|CD939071 OV.112C03F010313 OV Triticum aestivu... 50 5e-004
gb|BE443042.1|BE443042 WHE1114_C06_E12ZS Wheat etiolated se... 46 0.007
gb|BE493448.1|BE493448 WHE0580_C03_C03ZE Triticum monococcu... 46 0.007
gb|BJ246034.1|BJ246034 BJ246034 Y. Ogihara unpublished cDNA... 46 0.007
gb|BJ251949.1|BJ251949 BJ251949 Y. Ogihara unpublished cDNA... 46 0.007
gb|BJ274527.1|BJ274527 BJ274527 Y. Ogihara unpublished cDNA... 46 0.007
gb|BJ316173.1|BJ316173 BJ316173 Y. Ogihara unpublished cDNA... 46 0.007
gb|BJ321670.1|BJ321670 BJ321670 Y. Ogihara unpublished cDNA... 46 0.007
gb|BJ323203.1|BJ323203 BJ323203 Y. Ogihara unpublished cDNA... 46 0.007
gb|CK194878.1|CK194878 FGAS003311 Triticum aestivum FGAS: L... 46 0.007
gb|DN949027.1|DN949027 D03_T3 WSWR cDNA library Triticum ae... 46 0.007
gb|BE406801.1|BE406801 WHE0432_b08_d16zS Wheat etiolated se... 44 0.028
gb|BE490768.1|BE490768 WHE0368_F08_K16ZS Wheat cold-stresse... 44 0.028
gb|BJ279829.1|BJ279829 BJ279829 Y. Ogihara unpublished cDNA... 44 0.028
gb|BQ838637.1|BQ838637 WHE2912_H10_P20ZS Wheat aluminum-str... 44 0.028
gb|CA594559.1|CA594559 wpa1c.pk008.g19 wpa1c Triticum aesti... 44 0.028
gb|CK195212.1|CK195212 FGAS003651 Triticum aestivum FGAS: L... 40 0.44
>gb|BE499786.1|BE499786 WHE0975_C02_E03ZS Wheat pre-anthesis spike cDNA library Triticum
aestivum cDNA clone WHE0975_C02_E03, mRNA sequence
Length = 558
Score = 60.0 bits (30), Expect = 5e-007
Identities = 57/66 (86%)
Strand = Plus / Plus
Query: 525 attggtgccaattacgcgtctggtggatctggcattctcaacaccacgggaaacgggaca 584
||||| ||||| ||||| || |||||||| ||||| ||| ||||||||||||| |||||
Sbjct: 374 attggcgccaactacgcttccggtggatccggcatcctcgacaccacgggaaaagggacg 433
Query: 585 ctcacg 590
||||||
Sbjct: 434 ctcacg 439
Score = 44.1 bits (22), Expect = 0.028
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 408 ttcacgaatggctacaaccttgccga 433
||||| ||||||||||||||||||||
Sbjct: 257 ttcaccaatggctacaaccttgccga 282
>gb|BF202848.1|BF202848 WHE1782_D05_G09ZS Wheat pre-anthesis spike cDNA library Triticum
aestivum cDNA clone WHE1782_D05_G09, mRNA sequence
Length = 497
Score = 60.0 bits (30), Expect = 5e-007
Identities = 57/66 (86%)
Strand = Plus / Plus
Query: 525 attggtgccaattacgcgtctggtggatctggcattctcaacaccacgggaaacgggaca 584
||||| ||||| ||||| || |||||||| ||||| ||| ||||||||||||| |||||
Sbjct: 47 attggcgccaactacgcttccggtggatccggcatcctcgacaccacgggaaaagggacg 106
Query: 585 ctcacg 590
||||||
Sbjct: 107 ctcacg 112
>gb|BF202982.1|BF202982 WHE1768_A01_A02ZS Wheat pre-anthesis spike cDNA library Triticum
aestivum cDNA clone WHE1768_A01_A02, mRNA sequence
Length = 489
Score = 60.0 bits (30), Expect = 5e-007
Identities = 57/66 (86%)
Strand = Plus / Plus
Query: 525 attggtgccaattacgcgtctggtggatctggcattctcaacaccacgggaaacgggaca 584
||||| ||||| ||||| || |||||||| ||||| ||| ||||||||||||| |||||
Sbjct: 336 attggcgccaactacgcttccggtggatccggcatcctcgacaccacgggaaaagggacg 395
Query: 585 ctcacg 590
||||||
Sbjct: 396 ctcacg 401
Score = 44.1 bits (22), Expect = 0.028
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 408 ttcacgaatggctacaaccttgccga 433
||||| ||||||||||||||||||||
Sbjct: 219 ttcaccaatggctacaaccttgccga 244
>gb|BF483674.1|BF483674 WHE2336_E06_J12ZS Wheat pre-anthesis spike cDNA library Triticum
aestivum cDNA clone WHE2336_E06_J12, mRNA sequence
Length = 546
Score = 60.0 bits (30), Expect = 5e-007
Identities = 57/66 (86%)
Strand = Plus / Plus
Query: 525 attggtgccaattacgcgtctggtggatctggcattctcaacaccacgggaaacgggaca 584
||||| ||||| ||||| || |||||||| ||||| ||| ||||||||||||| |||||
Sbjct: 362 attggcgccaactacgcttccggtggatccggcatcctcgacaccacgggaaaagggacg 421
Query: 585 ctcacg 590
||||||
Sbjct: 422 ctcacg 427
Score = 44.1 bits (22), Expect = 0.028
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 408 ttcacgaatggctacaaccttgccga 433
||||| ||||||||||||||||||||
Sbjct: 245 ttcaccaatggctacaaccttgccga 270
>gb|BF484512.1|BF484512 WHE2324_E01_J02ZS Wheat pre-anthesis spike cDNA library Triticum
aestivum cDNA clone WHE2324_E01_J02, mRNA sequence
Length = 581
Score = 60.0 bits (30), Expect = 5e-007
Identities = 57/66 (86%)
Strand = Plus / Plus
Query: 525 attggtgccaattacgcgtctggtggatctggcattctcaacaccacgggaaacgggaca 584
||||| ||||| ||||| || |||||||| ||||| ||| ||||||||||||| |||||
Sbjct: 374 attggcgccaactacgcttccggtggatccggcatcctcgacaccacgggaaaagggacg 433
Query: 585 ctcacg 590
||||||
Sbjct: 434 ctcacg 439
Score = 44.1 bits (22), Expect = 0.028
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 408 ttcacgaatggctacaaccttgccga 433
||||| ||||||||||||||||||||
Sbjct: 257 ttcaccaatggctacaaccttgccga 282
>gb|BG262817.1|BG262817 WHE0945_F04_K07ZS Wheat 5-15 DAP spike cDNA library Triticum
aestivum cDNA clone WHE0945_F04_K07, mRNA sequence
Length = 596
Score = 60.0 bits (30), Expect = 5e-007
Identities = 57/66 (86%)
Strand = Plus / Plus
Query: 525 attggtgccaattacgcgtctggtggatctggcattctcaacaccacgggaaacgggaca 584
||||| ||||| ||||| || |||||||| ||||| ||| ||||||||||||| |||||
Sbjct: 405 attggcgccaactacgcttccggtggatccggcatcctcgacaccacgggaaaagggacg 464
Query: 585 ctcacg 590
||||||
Sbjct: 465 ctcacg 470
Score = 44.1 bits (22), Expect = 0.028
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 408 ttcacgaatggctacaaccttgccga 433
||||| ||||||||||||||||||||
Sbjct: 288 ttcaccaatggctacaaccttgccga 313
>gb|BJ269571.1|BJ269571 BJ269571 Y. Ogihara unpublished cDNA library, Wh_oh Triticum
aestivum cDNA clone whoh22i23 5', mRNA sequence
Length = 559
Score = 60.0 bits (30), Expect = 5e-007
Identities = 57/66 (86%)
Strand = Plus / Plus
Query: 525 attggtgccaattacgcgtctggtggatctggcattctcaacaccacgggaaacgggaca 584
||||| ||||| ||||| || |||||||| ||||| ||| ||||||||||||| |||||
Sbjct: 365 attggcgccaactacgcttccggtggatccggcatcctcgacaccacgggaaaagggacg 424
Query: 585 ctcacg 590
||||||
Sbjct: 425 ctcacg 430
Score = 44.1 bits (22), Expect = 0.028
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 408 ttcacgaatggctacaaccttgccga 433
||||| ||||||||||||||||||||
Sbjct: 248 ttcaccaatggctacaaccttgccga 273
>gb|AL827075.1|AL827075 AL827075 p:638 Triticum aestivum cDNA clone F12_p638_plate_7, mRNA
sequence
Length = 538
Score = 60.0 bits (30), Expect = 5e-007
Identities = 57/66 (86%)
Strand = Plus / Plus
Query: 525 attggtgccaattacgcgtctggtggatctggcattctcaacaccacgggaaacgggaca 584
||||| ||||| ||||| || |||||||| ||||| ||| ||||||||||||| |||||
Sbjct: 420 attggcgccaactacgcttccggtggatccggcatcctcgacaccacgggaaaagggacg 479
Query: 585 ctcacg 590
||||||
Sbjct: 480 ctcacg 485
Score = 44.1 bits (22), Expect = 0.028
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 408 ttcacgaatggctacaaccttgccga 433
||||| ||||||||||||||||||||
Sbjct: 303 ttcaccaatggctacaaccttgccga 328
>gb|AL827241.1|AL827241 AL827241 p:638 Triticum aestivum cDNA clone D02_p638_plate_5, mRNA
sequence
Length = 566
Score = 60.0 bits (30), Expect = 5e-007
Identities = 57/66 (86%)
Strand = Plus / Plus
Query: 525 attggtgccaattacgcgtctggtggatctggcattctcaacaccacgggaaacgggaca 584
||||| ||||| ||||| || |||||||| ||||| ||| ||||||||||||| |||||
Sbjct: 400 attggcgccaactacgcttccggtggatccggcatcctcgacaccacgggaaaagggacg 459
Query: 585 ctcacg 590
||||||
Sbjct: 460 ctcacg 465
Score = 44.1 bits (22), Expect = 0.028
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 408 ttcacgaatggctacaaccttgccga 433
||||| ||||||||||||||||||||
Sbjct: 283 ttcaccaatggctacaaccttgccga 308
>gb|CA729968.1|CA729968 wip1c.pk002.j13 wip1c Triticum aestivum cDNA clone wip1c.pk002.j13
5' end, mRNA sequence
Length = 619
Score = 60.0 bits (30), Expect = 5e-007
Identities = 57/66 (86%)
Strand = Plus / Plus
Query: 525 attggtgccaattacgcgtctggtggatctggcattctcaacaccacgggaaacgggaca 584
||||| ||||| ||||| || |||||||| ||||| ||| ||||||||||||| |||||
Sbjct: 425 attggcgccaactacgcttccggtggatccggcatcctcgacaccacgggaaaagggacg 484
Query: 585 ctcacg 590
||||||
Sbjct: 485 ctcacg 490
Score = 44.1 bits (22), Expect = 0.028
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 408 ttcacgaatggctacaaccttgccga 433
||||| ||||||||||||||||||||
Sbjct: 308 ttcaccaatggctacaaccttgccga 333
>gb|CK161415.1|CK161415 FGAS013985 Triticum aestivum FGAS: Library 4 Gate 8 Triticum
aestivum cDNA, mRNA sequence
Length = 1129
Score = 60.0 bits (30), Expect = 5e-007
Identities = 57/66 (86%)
Strand = Plus / Plus
Query: 525 attggtgccaattacgcgtctggtggatctggcattctcaacaccacgggaaacgggaca 584
||||| ||||| ||||| || |||||||| ||||| ||| ||||||||||||| |||||
Sbjct: 434 attggcgccaactacgcttccggtggatccggcatcctcgacaccacgggaaaagggacg 493
Query: 585 ctcacg 590
||||||
Sbjct: 494 ctcacg 499
Score = 44.1 bits (22), Expect = 0.028
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 408 ttcacgaatggctacaaccttgccga 433
||||| ||||||||||||||||||||
Sbjct: 317 ttcaccaatggctacaaccttgccga 342
>gb|CK161416.1|CK161416 FGAS013986 Triticum aestivum FGAS: Library 4 Gate 8 Triticum
aestivum cDNA, mRNA sequence
Length = 1182
Score = 60.0 bits (30), Expect = 5e-007
Identities = 57/66 (86%)
Strand = Plus / Plus
Query: 525 attggtgccaattacgcgtctggtggatctggcattctcaacaccacgggaaacgggaca 584
||||| ||||| ||||| || |||||||| ||||| ||| ||||||||||||| |||||
Sbjct: 423 attggcgccaactacgcttccggtggatccggcatcctcgacaccacgggaaaagggacg 482
Query: 585 ctcacg 590
||||||
Sbjct: 483 ctcacg 488
Score = 44.1 bits (22), Expect = 0.028
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 408 ttcacgaatggctacaaccttgccga 433
||||| ||||||||||||||||||||
Sbjct: 306 ttcaccaatggctacaaccttgccga 331
>gb|BE442702.1|BE442702 WHE1103_G12_N23ZS Wheat etiolated seedling root normalized cDNA
library Triticum aestivum cDNA clone WHE1103_G12_N23,
mRNA sequence
Length = 551
Score = 54.0 bits (27), Expect = 3e-005
Identities = 66/79 (83%)
Strand = Plus / Plus
Query: 1145 cgacgactacatgttctgggacatgctacatcctacgcaggcaacaaatgaacgtggggt 1204
||||||||||||||||||||||||||| || || ||||| || || | || || || ||
Sbjct: 276 cgacgactacatgttctgggacatgctccaccccacgcacgccaccatcgagcgcggcgt 335
Query: 1205 ggtcgccatcttctacggc 1223
|||||| |||||||||||
Sbjct: 336 cgtcgccctcttctacggc 354
>gb|BE499849.1|BE499849 WHE0979_E07_I13ZS Wheat pre-anthesis spike cDNA library Triticum
aestivum cDNA clone WHE0979_E07_I13, mRNA sequence
Length = 462
Score = 54.0 bits (27), Expect = 3e-005
Identities = 66/79 (83%)
Strand = Plus / Plus
Query: 1145 cgacgactacatgttctgggacatgctacatcctacgcaggcaacaaatgaacgtggggt 1204
||||||||||||||||||||||||||| || || ||||| || || | || || || ||
Sbjct: 335 cgacgactacatgttctgggacatgctccaccccacgcacgccaccatcgagcgcggcgt 394
Query: 1205 ggtcgccatcttctacggc 1223
|||||| |||||||||||
Sbjct: 395 cgtcgccctcttctacggc 413
>gb|BE586195.1|BE586195 Est7-4-5_H08_7C1sp6_064 KSU wheat Fusarium graminearum infected spike
cDNA library Triticum aestivum cDNA clone
Est7-4-5_H08_7C1sp6_064, mRNA sequence
Length = 640
Score = 54.0 bits (27), Expect = 3e-005
Identities = 27/27 (100%)
Strand = Plus / Minus
Query: 1145 cgacgactacatgttctgggacatgct 1171
|||||||||||||||||||||||||||
Sbjct: 376 cgacgactacatgttctgggacatgct 350
>gb|BM136117.1|BM136117 WHE2602_H11_O22ZS Wheat Fusarium graminearum infected spike cDNA
library Triticum aestivum cDNA clone WHE2602_H11_O22,
mRNA sequence
Length = 603
Score = 54.0 bits (27), Expect = 3e-005
Identities = 66/79 (83%)
Strand = Plus / Plus
Query: 1145 cgacgactacatgttctgggacatgctacatcctacgcaggcaacaaatgaacgtggggt 1204
||||||||||||||||||||||||||| || || ||||| || || | || || || ||
Sbjct: 452 cgacgactacatgttctgggacatgctccaccccacgcacgccaccatcgagcgcggcgt 511
Query: 1205 ggtcgccatcttctacggc 1223
|||||| |||||||||||
Sbjct: 512 cgtcgccctcttctacggc 530
Score = 44.1 bits (22), Expect = 0.028
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 811 tgggagcacggaggttggggatcctagacgtgcc 844
|||||||||||| | |||||||||| ||||||||
Sbjct: 112 tgggagcacggatggtggggatcctcgacgtgcc 145
>gb|BJ210585.1|BJ210585 BJ210585 Y. Ogihara unpublished cDNA library, Wh Triticum aestivum
cDNA clone wh28k23 5', mRNA sequence
Length = 393
Score = 54.0 bits (27), Expect = 3e-005
Identities = 66/79 (83%)
Strand = Plus / Plus
Query: 1145 cgacgactacatgttctgggacatgctacatcctacgcaggcaacaaatgaacgtggggt 1204
||||||||||||||||||||||||||| || || ||||| || || | || || || ||
Sbjct: 15 cgacgactacatgttctgggacatgctccaccccacgcacgccaccatcgagcgcggcgt 74
Query: 1205 ggtcgccatcttctacggc 1223
|||||| |||||||||||
Sbjct: 75 cgtcgccctcttctacggc 93
>gb|BJ217811.1|BJ217811 BJ217811 Y. Ogihara unpublished cDNA library, Wh Triticum aestivum
cDNA clone wh28k23 3', mRNA sequence
Length = 372
Score = 54.0 bits (27), Expect = 3e-005
Identities = 66/79 (83%)
Strand = Plus / Minus
Query: 1145 cgacgactacatgttctgggacatgctacatcctacgcaggcaacaaatgaacgtggggt 1204
||||||||||||||||||||||||||| || || ||||| || || | || || || ||
Sbjct: 358 cgacgactacatgttctgggacatgctccaccccacgcacgccaccatcgagcgcggcgt 299
Query: 1205 ggtcgccatcttctacggc 1223
|||||| |||||||||||
Sbjct: 298 cgtcgccctcttctacggc 280
>gb|BQ295215.1|BQ295215 WHE2867_E02_I03ZS Wheat unstressed root tip cDNA library Triticum
aestivum cDNA clone WHE2867_E02_I03, mRNA sequence
Length = 564
Score = 54.0 bits (27), Expect = 3e-005
Identities = 66/79 (83%)
Strand = Plus / Plus
Query: 1145 cgacgactacatgttctgggacatgctacatcctacgcaggcaacaaatgaacgtggggt 1204
||||||||||||||||||||||||||| || || ||||| || || | || || || ||
Sbjct: 238 cgacgactacatgttctgggacatgctccaccccacgcacgccaccatcgagcgcggcgt 297
Query: 1205 ggtcgccatcttctacggc 1223
|||||| |||||||||||
Sbjct: 298 cgtcgccctcttctacggc 316
>gb|CD937517.1|CD937517 OV.107E03R010430 OV Triticum aestivum cDNA clone OV107E03, mRNA
sequence
Length = 490
Score = 54.0 bits (27), Expect = 3e-005
Identities = 27/27 (100%)
Strand = Plus / Minus
Query: 1145 cgacgactacatgttctgggacatgct 1171
|||||||||||||||||||||||||||
Sbjct: 393 cgacgactacatgttctgggacatgct 367
>gb|CB307588.1|CB307588 HFIG573 Hessian fly infested cDNA library Triticum aestivum cDNA,
mRNA sequence
Length = 589
Score = 54.0 bits (27), Expect = 3e-005
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 1145 cgacgactacatgttctgggacatgct 1171
|||||||||||||||||||||||||||
Sbjct: 537 cgacgactacatgttctgggacatgct 563
Score = 44.1 bits (22), Expect = 0.028
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 811 tgggagcacggaggttggggatcctagacgtgcc 844
|||||||||||| | |||||||||| ||||||||
Sbjct: 197 tgggagcacggatggtggggatcctcgacgtgcc 230
>gb|CK206273.1|CK206273 FGAS017858 Triticum aestivum FGAS: Library 5 GATE 7 Triticum aestivum
cDNA, mRNA sequence
Length = 1093
Score = 54.0 bits (27), Expect = 3e-005
Identities = 66/79 (83%)
Strand = Plus / Plus
Query: 1145 cgacgactacatgttctgggacatgctacatcctacgcaggcaacaaatgaacgtggggt 1204
||||||||||||||||||||||||||| || || ||||| || || | || || || ||
Sbjct: 605 cgacgactacatgttctgggacatgctccaccccacgcacgccaccatcgagcgcggcgt 664
Query: 1205 ggtcgccatcttctacggc 1223
|||||| |||||||||||
Sbjct: 665 cgtcgccctcttctacggc 683
Score = 44.1 bits (22), Expect = 0.028
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 811 tgggagcacggaggttggggatcctagacgtgcc 844
|||||||||||| | |||||||||| ||||||||
Sbjct: 265 tgggagcacggatggtggggatcctcgacgtgcc 298
>gb|AJ613539.1|AJ613539 AJ613539 Triticum turgidum subsp. durum etiolated seedling 20 day
Triticum turgidum subsp. durum cDNA clone 08892R, mRNA
sequence
Length = 663
Score = 54.0 bits (27), Expect = 3e-005
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 1145 cgacgactacatgttctgggacatgct 1171
|||||||||||||||||||||||||||
Sbjct: 238 cgacgactacatgttctgggacatgct 264
>gb|AJ615244.1|AJ615244 AJ615244 Triticum turgidum subsp. durum etiolated seedling 20 day
Triticum turgidum subsp. durum cDNA clone 11360R, mRNA
sequence
Length = 565
Score = 54.0 bits (27), Expect = 3e-005
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 1145 cgacgactacatgttctgggacatgct 1171
|||||||||||||||||||||||||||
Sbjct: 238 cgacgactacatgttctgggacatgct 264
>gb|DN949106.1|DN949106 KUCD01_13_B10_T3 WSWR cDNA library Triticum aestivum cDNA, mRNA
sequence
Length = 1190
Score = 54.0 bits (27), Expect = 3e-005
Identities = 66/79 (83%)
Strand = Plus / Plus
Query: 1145 cgacgactacatgttctgggacatgctacatcctacgcaggcaacaaatgaacgtggggt 1204
||||||||||||||||||||||||||| || || ||||| || || | || || || ||
Sbjct: 253 cgacgactacatgttctgggacatgctccaccccacgcacgccaccatcgagcgcggcgt 312
Query: 1205 ggtcgccatcttctacggc 1223
|||||| |||||||||||
Sbjct: 313 cgtcgccctcttctacggc 331
>gb|CD937490.1|CD937490 OV.107C11F010206 OV Triticum aestivum cDNA clone OV107C11, mRNA
sequence
Length = 622
Score = 50.1 bits (25), Expect = 5e-004
Identities = 40/45 (88%)
Strand = Plus / Plus
Query: 546 ggtggatctggcattctcaacaccacgggaaacgggacactcacg 590
|||||||| ||||| ||| ||||||||||||| ||||| ||||||
Sbjct: 434 ggtggatccggcatcctcgacaccacgggaaaagggacgctcacg 478
Score = 46.1 bits (23), Expect = 0.007
Identities = 44/51 (86%)
Strand = Plus / Plus
Query: 669 tcgaggtccttgttccttatcagcgccggcggcaatgacttctccgccttc 719
||||||||| | ||||| |||| | |||||||||||||||||| ||||||
Sbjct: 554 tcgaggtccctcttcctcctcagtggcggcggcaatgacttctcagccttc 604
>gb|CD939071.1|CD939071 OV.112C03F010313 OV Triticum aestivum cDNA clone OV112C03, mRNA
sequence
Length = 714
Score = 50.1 bits (25), Expect = 5e-004
Identities = 40/45 (88%)
Strand = Plus / Plus
Query: 546 ggtggatctggcattctcaacaccacgggaaacgggacactcacg 590
|||||||| ||||| ||| ||||||||||||| ||||| ||||||
Sbjct: 433 ggtggatccggcatcctcgacaccacgggaaaagggacgctcacg 477
Score = 46.1 bits (23), Expect = 0.007
Identities = 44/51 (86%)
Strand = Plus / Plus
Query: 669 tcgaggtccttgttccttatcagcgccggcggcaatgacttctccgccttc 719
||||||||| | ||||| |||| | |||||||||||||||||| ||||||
Sbjct: 553 tcgaggtccctcttcctcctcagtggcggcggcaatgacttctcagccttc 603
>gb|BE443042.1|BE443042 WHE1114_C06_E12ZS Wheat etiolated seedling root normalized cDNA
library Triticum aestivum cDNA clone WHE1114_C06_E12,
mRNA sequence
Length = 586
Score = 46.1 bits (23), Expect = 0.007
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1149 gactacatgttctgggacatgct 1171
|||||||||||||||||||||||
Sbjct: 440 gactacatgttctgggacatgct 462
>gb|BE493448.1|BE493448 WHE0580_C03_C03ZE Triticum monococcum vegetative apex cDNA library
Triticum monococcum cDNA clone WHE0580_C03_C03, mRNA
sequence
Length = 587
Score = 46.1 bits (23), Expect = 0.007
Identities = 62/75 (82%)
Strand = Plus / Plus
Query: 1149 gactacatgttctgggacatgctacatcctacgcaggcaacaaatgaacgtggggtggtc 1208
||||||||||||||||||||||| || || ||||| || || | || || || || |||
Sbjct: 283 gactacatgttctgggacatgctccaccccacgcacgccaccatcgagcgcggtgtcgtc 342
Query: 1209 gccatcttctacggc 1223
||| |||||||||||
Sbjct: 343 gccctcttctacggc 357
>gb|BJ246034.1|BJ246034 BJ246034 Y. Ogihara unpublished cDNA library, Wh_f Triticum aestivum
cDNA clone whf21c22 5', mRNA sequence
Length = 412
Score = 46.1 bits (23), Expect = 0.007
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1149 gactacatgttctgggacatgct 1171
|||||||||||||||||||||||
Sbjct: 5 gactacatgttctgggacatgct 27
>gb|BJ251949.1|BJ251949 BJ251949 Y. Ogihara unpublished cDNA library, Wh_f Triticum aestivum
cDNA clone whf21c22 3', mRNA sequence
Length = 377
Score = 46.1 bits (23), Expect = 0.007
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 1149 gactacatgttctgggacatgct 1171
|||||||||||||||||||||||
Sbjct: 359 gactacatgttctgggacatgct 337
>gb|BJ274527.1|BJ274527 BJ274527 Y. Ogihara unpublished cDNA library, Wh_oh Triticum aestivum
cDNA clone whoh22i23 3', mRNA sequence
Length = 712
Score = 46.1 bits (23), Expect = 0.007
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 1149 gactacatgttctgggacatgct 1171
|||||||||||||||||||||||
Sbjct: 262 gactacatgttctgggacatgct 240
>gb|BJ316173.1|BJ316173 BJ316173 Y. Ogihara unpublished cDNA library, Wh_yf Triticum aestivum
cDNA clone whyf21n16 5', mRNA sequence
Length = 507
Score = 46.1 bits (23), Expect = 0.007
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1149 gactacatgttctgggacatgct 1171
|||||||||||||||||||||||
Sbjct: 207 gactacatgttctgggacatgct 229
>gb|BJ321670.1|BJ321670 BJ321670 Y. Ogihara unpublished cDNA library, Wh_yf Triticum aestivum
cDNA clone whyf21n16 3', mRNA sequence
Length = 483
Score = 46.1 bits (23), Expect = 0.007
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 1149 gactacatgttctgggacatgct 1171
|||||||||||||||||||||||
Sbjct: 277 gactacatgttctgggacatgct 255
>gb|BJ323203.1|BJ323203 BJ323203 Y. Ogihara unpublished cDNA library, Wh_yf Triticum aestivum
cDNA clone whyf29f11 3', mRNA sequence
Length = 627
Score = 46.1 bits (23), Expect = 0.007
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 1149 gactacatgttctgggacatgct 1171
|||||||||||||||||||||||
Sbjct: 370 gactacatgttctgggacatgct 348
>gb|CK194878.1|CK194878 FGAS003311 Triticum aestivum FGAS: Library 3 Gate 6 Triticum aestivum
cDNA, mRNA sequence
Length = 933
Score = 46.1 bits (23), Expect = 0.007
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 1145 cgacgactacatgttctgggacatgct 1171
||||||||||||||| |||||||||||
Sbjct: 595 cgacgactacatgttttgggacatgct 569
>gb|DN949027.1|DN949027 D03_T3 WSWR cDNA library Triticum aestivum cDNA, mRNA sequence
Length = 925
Score = 46.1 bits (23), Expect = 0.007
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1149 gactacatgttctgggacatgct 1171
|||||||||||||||||||||||
Sbjct: 581 gactacatgttctgggacatgct 603
>gb|BE406801.1|BE406801 WHE0432_b08_d16zS Wheat etiolated seedling root cDNA library
Triticum aestivum cDNA clone WHE0432_b08_d16, mRNA
sequence
Length = 197
Score = 44.1 bits (22), Expect = 0.028
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 811 tgggagcacggaggttggggatcctagacgtgcc 844
|||||||||||| | |||||||||| ||||||||
Sbjct: 131 tgggagcacggatggtggggatcctcgacgtgcc 164
>gb|BE490768.1|BE490768 WHE0368_F08_K16ZS Wheat cold-stressed seedling cDNA library
Triticum aestivum cDNA clone WHE0368_F08_K16, mRNA
sequence
Length = 378
Score = 44.1 bits (22), Expect = 0.028
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 811 tgggagcacggaggttggggatcctagacgtgcc 844
|||||||||||| | |||||||||| ||||||||
Sbjct: 286 tgggagcacggatggtggggatcctcgacgtgcc 319
>gb|BJ279829.1|BJ279829 BJ279829 Y. Ogihara unpublished cDNA library, Wh_r Triticum
aestivum cDNA clone whr5a04 5', mRNA sequence
Length = 199
Score = 44.1 bits (22), Expect = 0.028
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 408 ttcacgaatggctacaaccttgccga 433
||||| ||||||||||||||||||||
Sbjct: 41 ttcaccaatggctacaaccttgccga 66
>gb|BQ838637.1|BQ838637 WHE2912_H10_P20ZS Wheat aluminum-stressed root tip cDNA library
Triticum aestivum cDNA clone WHE2912_H10_P20, mRNA
sequence
Length = 733
Score = 44.1 bits (22), Expect = 0.028
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 811 tgggagcacggaggttggggatcctagacgtgcc 844
|||||||||||| | |||||||||| ||||||||
Sbjct: 687 tgggagcacggatggtggggatcctcgacgtgcc 720
>gb|CA594559.1|CA594559 wpa1c.pk008.g19 wpa1c Triticum aestivum cDNA clone wpa1c.pk008.g19
5' end, mRNA sequence
Length = 555
Score = 44.1 bits (22), Expect = 0.028
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 811 tgggagcacggaggttggggatcctagacgtgcc 844
|||||||||||| | |||||||||| ||||||||
Sbjct: 497 tgggagcacggatggtggggatcctcgacgtgcc 530
>gb|CK195212.1|CK195212 FGAS003651 Triticum aestivum FGAS: Library 3 Gate 6 Triticum
aestivum cDNA, mRNA sequence
Length = 844
Score = 40.1 bits (20), Expect = 0.44
Identities = 39/44 (88%), Gaps = 1/44 (2%)
Strand = Plus / Plus
Query: 811 tgggagcacgga-ggttggggatcctagacgtgccagctatcgg 853
|||||||||||| || |||||||||| |||||||| || |||||
Sbjct: 790 tgggagcacggatgggtggggatcctcgacgtgcccgccatcgg 833
Database: Triticum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 3:01 PM
Number of letters in database: 367,240,239
Number of sequences in database: 636,343
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 327,584
Number of Sequences: 636343
Number of extensions: 327584
Number of successful extensions: 90423
Number of sequences better than 0.5: 44
Number of HSP's better than 0.5 without gapping: 43
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 90330
Number of HSP's gapped (non-prelim): 95
length of query: 1520
length of database: 367,240,239
effective HSP length: 20
effective length of query: 1500
effective length of database: 354,513,379
effective search space: 531770068500
effective search space used: 531770068500
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)