BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 8161196.3.1
(825 letters)
Database: Triticum_nucl_with_EST.fasta
636,343 sequences; 367,240,239 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CD875578.1|CD875578 AZO3.105O12F011002 AZO3 Triticum aes... 172 2e-041
gb|DR432324.1|DR432324 441E-1087 Line 441 epidermal library... 147 1e-033
gb|BJ209915.1|BJ209915 BJ209915 Y. Ogihara unpublished cDNA... 139 3e-031
gb|CB307587.1|CB307587 HFIG572 Hessian fly infested cDNA li... 139 3e-031
gb|BG605313.1|BG605313 WHE2331_C04_F07ZS Wheat pre-anthesis... 135 5e-030
gb|CV765032.1|CV765032 FGAS059417 Triticum aestivum FGAS: L... 133 2e-029
gb|CV768310.1|CV768310 FGAS062701 Triticum aestivum FGAS: L... 111 8e-023
gb|CA732471.1|CA732471 wlp1c.pk005.e18 wlp1c Triticum aesti... 84 2e-014
emb|AX658811.1| Sequence 84 from Patent WO03000904 66 4e-009
>gb|CD875578.1|CD875578 AZO3.105O12F011002 AZO3 Triticum aestivum cDNA clone AZO3105O12,
mRNA sequence
Length = 703
Score = 172 bits (87), Expect = 2e-041
Identities = 165/191 (86%)
Strand = Plus / Plus
Query: 495 aggacccttctttgtgatcgttgtggtttacagcctgcatcagtccgatgtcttgaggac 554
||||||||||| ||||||||||||| || |||||||||| ||||||| |||||||| ||
Sbjct: 101 aggacccttctgtgtgatcgttgtgcttcacagcctgcagcagtccggtgtcttgaagag 160
Query: 555 aacacatcactttgccaaaactgtgattggaatgggcatgatgcagcatcaggggcttct 614
||||| |||||||||||||||||||||||||| ||||||| || |||| |||| |
Sbjct: 161 aacacctcactttgccaaaactgtgattggaacgggcatgccgcgacatccttggctgcc 220
Query: 615 gggcataaaaggcaggccataaactgttactcagggtgcccatcatcagcagagctttcg 674
|||||| ||||||| |||||||||| |||||||||||||||||||||| |||||| |
Sbjct: 221 gggcatctaaggcagaccataaactgctactcagggtgcccatcatcagaagagctggca 280
Query: 675 agaatctggtc 685
|||||||||||
Sbjct: 281 agaatctggtc 291
>gb|DR432324.1|DR432324 441E-1087 Line 441 epidermal library Triticum monococcum cDNA, mRNA
sequence
Length = 745
Score = 147 bits (74), Expect = 1e-033
Identities = 263/326 (80%)
Strand = Plus / Plus
Query: 363 atcatggttcctctctgtggtttctgtgggaaacaaaggtcaatgatctactgcagatcg 422
||||||| | ||||||| | || ||||||| | || ||||| ||| | |||||| ||||
Sbjct: 285 atcatgggtgctctctgcgattactgtggggagcataggtccatggtttactgccgatcc 344
Query: 423 gatgcggcatcattgtgcttatcatgcgaccgtagcgttcattcagctaatgcactgtct 482
|||||||| || |||||||| |||||||| || | || |||||||||||||| || |||
Sbjct: 345 gatgcggcttctttgtgcttgtcatgcgatcgcaatgtgcattcagctaatgctctttct 404
Query: 483 cggcgtcatagaaggacccttctttgtgatcgttgtggtttacagcctgcatcagtccga 542
||||| |||| ||| || ||||| ||||| || |||| || ||||||||| |||||
Sbjct: 405 cggcgccatacaagaacacttctgtgtgaccggtgtgcttcacagcctgccatggtccgc 464
Query: 543 tgtcttgaggacaacacatcactttgccaaaactgtgattggaatgggcatgatgcagca 602
|| || || || ||||| |||||||||||||| ||||| |||||||||||| ||| | |
Sbjct: 465 tgcctagaagagaacacctcactttgccaaaattgtgactggaatgggcatagtgctgga 524
Query: 603 tcaggggcttctgggcataaaaggcaggccataaactgttactcagggtgcccatcatca 662
|| ||| |||| || ||||| ||| ||||||||| || || ||||||||||||||
Sbjct: 525 tcctctgctgctggacacaaaagacagaacataaactgctattcggggtgcccatcatct 584
Query: 663 gcagagctttcgagaatctggtcatt 688
||||||||||||||||| ||||||||
Sbjct: 585 gcagagctttcgagaatgtggtcatt 610
>gb|BJ209915.1|BJ209915 BJ209915 Y. Ogihara unpublished cDNA library, Wh Triticum aestivum
cDNA clone wh16e17 5', mRNA sequence
Length = 670
Score = 139 bits (70), Expect = 3e-031
Identities = 262/326 (80%)
Strand = Plus / Plus
Query: 363 atcatggttcctctctgtggtttctgtgggaaacaaaggtcaatgatctactgcagatcg 422
||||||| | ||||||| | || ||||||| | || ||||| ||| | |||||| ||||
Sbjct: 305 atcatgggtgctctctgcgattactgtggggagcataggtccatggtttactgccgatcc 364
Query: 423 gatgcggcatcattgtgcttatcatgcgaccgtagcgttcattcagctaatgcactgtct 482
|||||||| || |||||||| |||||||| || | || |||||||||||||| || |||
Sbjct: 365 gatgcggcttctttgtgcttgtcatgcgatcgcaatgtgcattcagctaatgctctttct 424
Query: 483 cggcgtcatagaaggacccttctttgtgatcgttgtggtttacagcctgcatcagtccga 542
||||| |||| || || ||||| ||||| || |||| || ||||||||| |||||
Sbjct: 425 cggcgccatacgagaacacttctgtgtgaccggtgtgcttcacagcctgccatggtccgc 484
Query: 543 tgtcttgaggacaacacatcactttgccaaaactgtgattggaatgggcatgatgcagca 602
|| || || || ||||| |||||||||||||| ||||| |||||||||||| ||| | |
Sbjct: 485 tgcctagaagagaacacctcactttgccaaaattgtgactggaatgggcatagtgctgga 544
Query: 603 tcaggggcttctgggcataaaaggcaggccataaactgttactcagggtgcccatcatca 662
|| ||| |||| || ||||| ||| ||||||||| || || ||||||||||||||
Sbjct: 545 tcctctgctgctggacacaaaagacagaacataaactgctattcggggtgcccatcatct 604
Query: 663 gcagagctttcgagaatctggtcatt 688
||||||||||||||||| ||||||||
Sbjct: 605 gcagagctttcgagaatgtggtcatt 630
>gb|CB307587.1|CB307587 HFIG572 Hessian fly infested cDNA library Triticum aestivum cDNA,
mRNA sequence
Length = 711
Score = 139 bits (70), Expect = 3e-031
Identities = 262/326 (80%)
Strand = Plus / Plus
Query: 363 atcatggttcctctctgtggtttctgtgggaaacaaaggtcaatgatctactgcagatcg 422
||||||| | ||||||| | || ||||||| | || ||||| ||| | |||||| ||||
Sbjct: 321 atcatgggtgctctctgcgattactgtggggagcataggtccatggtttactgccgatcc 380
Query: 423 gatgcggcatcattgtgcttatcatgcgaccgtagcgttcattcagctaatgcactgtct 482
||||| || || |||||||| |||||||| || | || |||||||||||||| || |||
Sbjct: 381 gatgcagcttctttgtgcttgtcatgcgatcgcaatgtgcattcagctaatgctctttct 440
Query: 483 cggcgtcatagaaggacccttctttgtgatcgttgtggtttacagcctgcatcagtccga 542
||||| |||| ||| || ||||| |||||||| |||| || ||||||||| |||||
Sbjct: 441 cggcgccatacaagaactcttctatgtgatcggtgtgcttcacagcctgctatggtccgc 500
Query: 543 tgtcttgaggacaacacatcactttgccaaaactgtgattggaatgggcatgatgcagca 602
|| || || || ||||| |||||||||||||| ||||| |||||||||||| ||| | |
Sbjct: 501 tgcctagaagagaacacctcactttgccaaaattgtgactggaatgggcatagtgctgga 560
Query: 603 tcaggggcttctgggcataaaaggcaggccataaactgttactcagggtgcccatcatca 662
|| ||| |||| || ||||| ||| |||||||| || |||||||||||||||||
Sbjct: 561 tcctctgctgctggacacaaaagacagaatataaactgctattcagggtgcccatcatct 620
Query: 663 gcagagctttcgagaatctggtcatt 688
||||||||||| ||||| ||||||||
Sbjct: 621 gcagagctttcaagaatgtggtcatt 646
>gb|BG605313.1|BG605313 WHE2331_C04_F07ZS Wheat pre-anthesis spike cDNA library Triticum
aestivum cDNA clone WHE2331_C04_F07, mRNA sequence
Length = 605
Score = 135 bits (68), Expect = 5e-030
Identities = 260/324 (80%)
Strand = Plus / Plus
Query: 363 atcatggttcctctctgtggtttctgtgggaaacaaaggtcaatgatctactgcagatcg 422
||||||| | ||||||| | || ||||||| | || ||||| ||| | |||||| ||||
Sbjct: 282 atcatgggtgctctctgcgattactgtggggagcataggtccatggtttactgccgatcc 341
Query: 423 gatgcggcatcattgtgcttatcatgcgaccgtagcgttcattcagctaatgcactgtct 482
|||||||| || |||||||| |||||||| || | || |||||||||||||| || |||
Sbjct: 342 gatgcggcttctttgtgcttgtcatgcgatcgcaatgtgcattcagctaatgctctttct 401
Query: 483 cggcgtcatagaaggacccttctttgtgatcgttgtggtttacagcctgcatcagtccga 542
||||| |||| || || ||||| ||||| || |||| || ||||||||| |||||
Sbjct: 402 cggcgccatacgagaacacttctgtgtgaccggtgtgcttcacagcctgccatggtccgc 461
Query: 543 tgtcttgaggacaacacatcactttgccaaaactgtgattggaatgggcatgatgcagca 602
|| || || || ||||| |||||||||||||| ||||| |||||||||||| ||| | |
Sbjct: 462 tgcctagaagagaacacctcactttgccaaaattgtgactggaatgggcatagtgctgga 521
Query: 603 tcaggggcttctgggcataaaaggcaggccataaactgttactcagggtgcccatcatca 662
|| ||| |||| || ||||| ||| ||||||||| || || ||||||||||||||
Sbjct: 522 tcctctgctgctggacacaaaagacagaacataaactgctattcggggtgcccatcatct 581
Query: 663 gcagagctttcgagaatctggtca 686
||||||||||||||||| ||||||
Sbjct: 582 gcagagctttcgagaatgtggtca 605
>gb|CV765032.1|CV765032 FGAS059417 Triticum aestivum FGAS: Library 2 Gate 3 Triticum
aestivum cDNA, mRNA sequence
Length = 819
Score = 133 bits (67), Expect = 2e-029
Identities = 261/326 (80%)
Strand = Plus / Plus
Query: 363 atcatggttcctctctgtggtttctgtgggaaacaaaggtcaatgatctactgcagatcg 422
||||||| | ||||||| | || ||||||| | || ||||| ||| | |||||| ||||
Sbjct: 410 atcatgggtgctctctgcgattactgtggggagcataggtccatggtttactgccgatcc 469
Query: 423 gatgcggcatcattgtgcttatcatgcgaccgtagcgttcattcagctaatgcactgtct 482
||||| || || |||||||| |||||||| || | || |||||||||||||| || |||
Sbjct: 470 gatgcagcttctttgtgcttgtcatgcgatcgcaatgtgcattcagctaatgctctttct 529
Query: 483 cggcgtcatagaaggacccttctttgtgatcgttgtggtttacagcctgcatcagtccga 542
||||| |||| ||| || ||||| |||||||| |||| || ||||||||| |||||
Sbjct: 530 cggcgccatacaagaactcttctatgtgatcggtgtgcttcacagcctgctatggtccgc 589
Query: 543 tgtcttgaggacaacacatcactttgccaaaactgtgattggaatgggcatgatgcagca 602
|| || || || ||||| |||||||||||||| ||||| |||||||||||| ||| | |
Sbjct: 590 tgcctagaagagaacacctcactttgccaaaattgtgactggaatgggcatagtgctgga 649
Query: 603 tcaggggcttctgggcataaaaggcaggccataaactgttactcagggtgcccatcatca 662
|| ||| |||| || || || ||| |||||||| || |||||||||||||||||
Sbjct: 650 tcctctgctgctggacacaanagacagaatataaactgctattcagggtgcccatcatct 709
Query: 663 gcagagctttcgagaatctggtcatt 688
||||||||||| ||||| ||||||||
Sbjct: 710 gcagagctttcaagaatgtggtcatt 735
>gb|CV768310.1|CV768310 FGAS062701 Triticum aestivum FGAS: Library 2 Gate 3 Triticum
aestivum cDNA, mRNA sequence
Length = 817
Score = 111 bits (56), Expect = 8e-023
Identities = 190/232 (81%), Gaps = 2/232 (0%)
Strand = Plus / Plus
Query: 363 atcatggttcctctctgtggtttctgtgggaaacaaaggtcaatgatctactgcagatcg 422
||||||| | ||||||| | || ||||||| | || ||||| ||| | |||||| ||||
Sbjct: 429 atcatgggtgctctctgcgattactgtggggagcataggtccatggtttactgccgatcc 488
Query: 423 gatgcggcatcattgtgcttatcatgcgaccgtagcgttcattcagctaatgcactgtct 482
|||||||| || |||||||| |||||||| || | || |||||||||||||| || |||
Sbjct: 489 gatgcggcttctttgtgcttgtcatgcgatcgcaatgtgcattcagctaatgctctttct 548
Query: 483 cggcgtcatagaaggacccttctttgtgatcgttgtggtttacagcct-gcatcagtccg 541
||||| |||| ||| || ||||| ||||| || |||| || ||||||| |||| |||||
Sbjct: 549 cggcgccatacaagaactcttctatgtgaccggtgtgcttcacagcctggcat-ggtccg 607
Query: 542 atgtcttgaggacaacacatcactttgccaaaactgtgattggaatgggcat 593
|| || ||||| ||||| |||||||||||||| ||||| ||||||||||||
Sbjct: 608 ctgcctagaggagaacacctcactttgccaaaattgtgactggaatgggcat 659
Score = 48.1 bits (24), Expect = 0.001
Identities = 49/56 (87%), Gaps = 1/56 (1%)
Strand = Plus / Plus
Query: 633 ataaactgttactcagggtgcccatcatcagcagagctttcgagaatctggtcatt 688
|||||||| || |||||||||| |||||| ||||||||||| ||||| ||| ||||
Sbjct: 698 ataaactgctattcagggtgcc-atcatctgcagagctttcaagaatgtgggcatt 752
>gb|CA732471.1|CA732471 wlp1c.pk005.e18 wlp1c Triticum aestivum cDNA clone wlp1c.pk005.e18
5' end, mRNA sequence
Length = 598
Score = 83.8 bits (42), Expect = 2e-014
Identities = 183/231 (79%)
Strand = Plus / Plus
Query: 363 atcatggttcctctctgtggtttctgtgggaaacaaaggtcaatgatctactgcagatcg 422
||||||| | ||||||| | || ||||||| | || ||||| ||| | |||||| ||||
Sbjct: 321 atcatgggtgctctctgcgattactgtggggagcataggtccatggtttactgccgatcc 380
Query: 423 gatgcggcatcattgtgcttatcatgcgaccgtagcgttcattcagctaatgcactgtct 482
|||||||| || |||||||| |||||||| || | || |||||||||||||| || |||
Sbjct: 381 gatgcggcttctttgtgcttgtcatgcgatcgcaatgtgcattcagctaatgctctttct 440
Query: 483 cggcgtcatagaaggacccttctttgtgatcgttgtggtttacagcctgcatcagtccga 542
||||| |||| || || ||||| ||||| || |||| || ||||||||| |||||
Sbjct: 441 cggcgccatacgagaacacttctgtgtgaccggtgtgcttcacagcctgccatggtccgc 500
Query: 543 tgtcttgaggacaacacatcactttgccaaaactgtgattggaatgggcat 593
|| | | || ||||| ||||||||| |||| ||||| ||||||||||||
Sbjct: 501 tgcntagnagagaacacctcactttgcnaaaattgtgactggaatgggcat 551
>emb|AX658811.1| Sequence 84 from Patent WO03000904
Length = 1416
Score = 65.9 bits (33), Expect = 4e-009
Identities = 39/41 (95%)
Strand = Plus / Plus
Query: 648 gggtgcccatcatcagcagagctttcgagaatctggtcatt 688
|||||||||||||| ||||||||||||||||| ||||||||
Sbjct: 2 gggtgcccatcatctgcagagctttcgagaatgtggtcatt 42
Database: Triticum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 3:01 PM
Number of letters in database: 367,240,239
Number of sequences in database: 636,343
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 176,366
Number of Sequences: 636343
Number of extensions: 176366
Number of successful extensions: 55565
Number of sequences better than 0.5: 9
Number of HSP's better than 0.5 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 55537
Number of HSP's gapped (non-prelim): 22
length of query: 825
length of database: 367,240,239
effective HSP length: 19
effective length of query: 806
effective length of database: 355,149,722
effective search space: 286250675932
effective search space used: 286250675932
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)