BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 5735869.2.1
         (539 letters)

Database: Triticum_nucl_with_EST.fasta 
           636,343 sequences; 367,240,239 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CA709186.1|CA709186  wdk2c.pk012.e3 wdk2c Triticum aestiv...   123   1e-026

>gb|CA709186.1|CA709186 wdk2c.pk012.e3 wdk2c Triticum aestivum cDNA clone wdk2c.pk012.e3 5'
           end, mRNA sequence
          Length = 502

 Score =  123 bits (62), Expect = 1e-026
 Identities = 144/172 (83%), Gaps = 5/172 (2%)
 Strand = Plus / Minus

                                                                       
Query: 313 gtcatcctcacttctcatgctcctgcaacatgttgcattgagatacaatgctgcggaaat 372
           |||||| ||||| |||  |||||||||||||||||||| |||| || ||| ||||||| |
Sbjct: 333 gtcatcatcactcctctggctcctgcaacatgttgcatcgagacacgatggtgcggaatt 274

                                                                       
Query: 373 cctcgaggtttatc-----atcaccgtcactatcaaagcaacggaccatcttagatatct 427
           |||||||| |||||     |||   |||||||||||||||| ||| ||||||||||| ||
Sbjct: 273 cctcgaggcttatctttccatctttgtcactatcaaagcaatggatcatcttagatagct 214

                                                               
Query: 428 cagaatctgtccagatgaaatcatttattgtagccattctttcnngatccca 479
           || |||||||||||||||||||||||||  | |||||| ||||  |||||||
Sbjct: 213 caaaatctgtccagatgaaatcatttatattggccattttttcaagatccca 162



  Database: Triticum_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  3:01 PM
  Number of letters in database: 367,240,239
  Number of sequences in database:  636,343
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 91,432
Number of Sequences: 636343
Number of extensions: 91432
Number of successful extensions: 20748
Number of sequences better than  0.5: 1
Number of HSP's better than  0.5 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 20745
Number of HSP's gapped (non-prelim): 3
length of query: 539
length of database: 367,240,239
effective HSP length: 19
effective length of query: 520
effective length of database: 355,149,722
effective search space: 184677855440
effective search space used: 184677855440
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)