BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 5352090.2.1
(915 letters)
Database: Triticum_nucl_with_EST.fasta
636,343 sequences; 367,240,239 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CD921678.1|CD921678 G750.001I20F010305 G750 Triticum aes... 402 e-110
gb|CD939601.1|CD939601 OV.114C11F010312 OV Triticum aestivu... 371 e-101
gb|CF133670.1|CF133670 WHE4361_G08_N15ZT Wheat meiotic flor... 371 e-101
gb|CV768700.1|CV768700 FGAS063091 Triticum aestivum FGAS: L... 363 1e-098
gb|BF482856.1|BF482856 WHE2301-2304_L12_L12ZS Wheat pre-ant... 315 3e-084
gb|BG607578.1|BG607578 WHE2480_F09_K18ZS Triticum monococcu... 266 2e-069
gb|CA657977.1|CA657977 wlm0.pk040.a3 wlm0 Triticum aestivum... 252 4e-065
gb|CA664775.1|CA664775 wlk1.pk0007.f7 wlk1 Triticum aestivu... 250 1e-064
gb|CA643391.1|CA643391 wre1n.pk0065.e4 wre1n Triticum aesti... 234 9e-060
gb|CA663432.1|CA663432 wlmk1.pk0034.b8 wlmk1 Triticum aesti... 216 2e-054
gb|BJ209142.1|BJ209142 BJ209142 Y. Ogihara unpublished cDNA... 202 3e-050
gb|CA646712.1|CA646712 wre1n.pk0114.a11 wre1n Triticum aest... 159 4e-037
gb|CA652234.1|CA652234 wre1n.pk0119.d2 wre1n Triticum aesti... 127 1e-027
gb|CK169018.1|CK169018 FGAS043621 Triticum aestivum FGAS: T... 113 2e-023
gb|BQ168954.1|BQ168954 WHE2480_F09_K18ZT Triticum monococcu... 111 9e-023
gb|CA654278.1|CA654278 wre1n.pk194.h8 wre1n Triticum aestiv... 88 1e-015
gb|CD932011.1|CD932011 GR45.116H06F010420 GR45 Triticum aes... 84 2e-014
gb|CA693845.1|CA693845 wlmk4.pk0010.e7 wlmk4 Triticum aesti... 74 2e-011
gb|CV769268.1|CV769268 FGAS063659 Triticum aestivum FGAS: L... 74 2e-011
gb|CK210012.1|CK210012 FGAS021803 Triticum aestivum FGAS: L... 72 7e-011
gb|BQ839311.1|BQ839311 WHE4164_F10_K20ZS Wheat CS whole pla... 64 2e-008
gb|CD934392.1|CD934392 OV.001B06R010412 OV Triticum aestivu... 60 3e-007
gb|CD938571.1|CD938571 OV.110F23F010309 OV Triticum aestivu... 60 3e-007
gb|DN829128.1|DN829128 KUCD01_06_C09_T3 WSWR cDNA library T... 44 0.017
gb|DN829560.1|DN829560 KUCD01_10_A04_T3 WSWR cDNA library T... 44 0.017
gb|CA497387.1|CA497387 WHE3226_H07_O14ZT Wheat meiotic anth... 40 0.26
gb|DR736538.1|DR736538 FGAS081908 Triticum aestivum FGAS: L... 40 0.26
>gb|CD921678.1|CD921678 G750.001I20F010305 G750 Triticum aestivum cDNA clone G750001I20,
mRNA sequence
Length = 720
Score = 402 bits (203), Expect = e-110
Identities = 403/467 (86%), Gaps = 7/467 (1%)
Strand = Plus / Plus
Query: 211 aggaggaagagatgttcccgcctggcctgatccaccaccgccctgacgcccccgttcccg 270
||||||| ||||||||||| ||||||||||||||||||||| | |||| ||| | ||||
Sbjct: 160 aggaggaggagatgttcccccctggcctgatccaccaccgcgcggacggcccggggcccg 219
Query: 271 gcgatggggcgacacgctccggccccggcgggccgagccttgtactgacggcggacccca 330
|||| | | || ||||||||| |||| ||| ||||| || || |||||||||||||
Sbjct: 220 gcgaggtgccg---cgctccggc---ggcgcgcccagcctcgtgctcacggcggacccca 273
Query: 331 agcccaggctgcggtggacggccgacctccacgagcgtttcgtcgacgccgtggcccagc 390
|||||||||| |||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct: 274 agcccaggctccggtggacggccgacctccacgagcgcttcgtcgacgccgtcgcccagc 333
Query: 391 tcggcggacccgagaaagcaacaccaaaaa-tatcttaaggacaatgggcgtcaagggtc 449
||||||| |||||||||||||||||||||| |||||||||||||||||| || ||||| |
Sbjct: 334 tcggcgggcccgagaaagcaacaccaaaaactatcttaaggacaatgggtgtaaagggac 393
Query: 450 ttactctttttcacttgaagagccatcttcagaaatacagattagggaaacaatctggta 509
| || || || ||||||||||| |||||||||||||||||| | ||||||||| |||| |
Sbjct: 394 tcacgctgttccacttgaagagtcatcttcagaaatacagaatggggaaacaaactggca 453
Query: 510 aggagggatcagagcaatctaaagatgcatcctatcttctagatgctcaaagtggaatga 569
| ||| | |||||||||||||||| ||||||||||| ||||||||| |||||||||
Sbjct: 454 aagagacgccggagcaatctaaagatgggtcctatcttcttgatgctcaaggtggaatga 513
Query: 570 gcgtgtcccctagagttcctgcccaggatatgaaagaaagccaagaagttaaagaagcac 629
|| |||| || |||||| || |||| ||| ||||||||| ||||||||||||||||| |
Sbjct: 514 gcctgtctcccagagtttctacccaagatgcgaaagaaagtcaagaagttaaagaagccc 573
Query: 630 tgagagcgcagatggaagtccaaagaagactgcatgaacaagtggag 676
||||||| ||||||||| | ||| |||| ||||||||||||||||||
Sbjct: 574 tgagagcacagatggaaatgcaacgaagcctgcatgaacaagtggag 620
Score = 42.1 bits (21), Expect = 0.066
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 126 ttggatccttcgcttttgggg 146
|||||||||||||||||||||
Sbjct: 71 ttggatccttcgcttttgggg 91
>gb|CD939601.1|CD939601 OV.114C11F010312 OV Triticum aestivum cDNA clone OV114C11, mRNA
sequence
Length = 704
Score = 371 bits (187), Expect = e-101
Identities = 399/467 (85%), Gaps = 7/467 (1%)
Strand = Plus / Plus
Query: 211 aggaggaagagatgttcccgcctggcctgatccaccaccgccctgacgcccccgttcccg 270
||||||| ||||||| || ||||||||||||||||||||| | |||| ||||| ||||
Sbjct: 76 aggaggagaagatgtttccccctggcctgatccaccaccgcacggacggccccgggcccg 135
Query: 271 gcgatggggcgacacgctccggccccggcgggccgagccttgtactgacggcggacccca 330
|||| | | || ||||||||| |||| ||| ||||| || || |||||||||||||
Sbjct: 136 gcgaggtgccg---cgctccggc---ggcgcgcccagcctcgtgctcacggcggacccca 189
Query: 331 agcccaggctgcggtggacggccgacctccacgagcgtttcgtcgacgccgtggcccagc 390
||||| | || |||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct: 190 agccccgactccggtggacggccgacctccacgagcgcttcgtcgacgccgtcgcccagc 249
Query: 391 tcggcggacccgagaaagcaacaccaaaaa-tatcttaaggacaatgggcgtcaagggtc 449
||||||| |||||||||||||||||||||| |||||||||||||||||| || ||||| |
Sbjct: 250 tcggcgggcccgagaaagcaacaccaaaaactatcttaaggacaatgggtgtaaagggac 309
Query: 450 ttactctttttcacttgaagagccatcttcagaaatacagattagggaaacaatctggta 509
| || ||||| ||||||||||| |||||||||||||||||| | ||||||||| |||| |
Sbjct: 310 taacgcttttccacttgaagagtcatcttcagaaatacagaatggggaaacaaactggga 369
Query: 510 aggagggatcagagcaatctaaagatgcatcctatcttctagatgctcaaagtggaatga 569
||||| | |||||||||||||||| || |||||||| ||||||||| |||||||||
Sbjct: 370 aggagacgccggagcaatctaaagatgggtcttatcttcttgatgctcaaggtggaatga 429
Query: 570 gcgtgtcccctagagttcctgcccaggatatgaaagaaagccaagaagttaaagaagcac 629
|| |||| || |||||| || | || ||| ||||||||| ||||||||||||||||| |
Sbjct: 430 gcctgtctcccagagtttctactcaagatgcgaaagaaagtcaagaagttaaagaagccc 489
Query: 630 tgagagcgcagatggaagtccaaagaagactgcatgaacaagtggag 676
||||||| |||||||| | ||| |||| ||||||||||||||||||
Sbjct: 490 tgagagcacagatggagatgcaacgaagcctgcatgaacaagtggag 536
>gb|CF133670.1|CF133670 WHE4361_G08_N15ZT Wheat meiotic floret cDNA library Triticum
aestivum cDNA clone WHE4361_G08_N15, mRNA sequence
Length = 758
Score = 371 bits (187), Expect = e-101
Identities = 399/467 (85%), Gaps = 7/467 (1%)
Strand = Plus / Plus
Query: 211 aggaggaagagatgttcccgcctggcctgatccaccaccgccctgacgcccccgttcccg 270
||||||| ||||||| || ||||||||||||||||||||| | |||| ||||| ||||
Sbjct: 116 aggaggagaagatgtttccccctggcctgatccaccaccgcacggacggccccgggcccg 175
Query: 271 gcgatggggcgacacgctccggccccggcgggccgagccttgtactgacggcggacccca 330
|||| | | || ||||||||| |||| ||| ||||| || || |||||||||||||
Sbjct: 176 gcgaggtgccg---cgctccggc---ggcgcgcccagcctcgtgctcacggcggacccca 229
Query: 331 agcccaggctgcggtggacggccgacctccacgagcgtttcgtcgacgccgtggcccagc 390
||||| | || |||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct: 230 agccccgactccggtggacggccgacctccacgagcgcttcgtcgacgccgtcgcccagc 289
Query: 391 tcggcggacccgagaaagcaacaccaaaaa-tatcttaaggacaatgggcgtcaagggtc 449
||||||| |||||||||||||||||||||| |||||||||||||||||| || ||||| |
Sbjct: 290 tcggcgggcccgagaaagcaacaccaaaaactatcttaaggacaatgggtgtaaagggac 349
Query: 450 ttactctttttcacttgaagagccatcttcagaaatacagattagggaaacaatctggta 509
| || ||||| ||||||||||| |||||||||||||||||| | ||||||||| |||| |
Sbjct: 350 taacgcttttccacttgaagagtcatcttcagaaatacagaatggggaaacaaactggga 409
Query: 510 aggagggatcagagcaatctaaagatgcatcctatcttctagatgctcaaagtggaatga 569
||||| | |||||||||||||||| || |||||||| ||||||||| |||||||||
Sbjct: 410 aggagacgccggagcaatctaaagatgggtcttatcttcttgatgctcaaggtggaatga 469
Query: 570 gcgtgtcccctagagttcctgcccaggatatgaaagaaagccaagaagttaaagaagcac 629
|| |||| || |||||| || | || ||| ||||||||| ||||||||||||||||| |
Sbjct: 470 gcctgtctcccagagtttctactcaagatgcgaaagaaagtcaagaagttaaagaagccc 529
Query: 630 tgagagcgcagatggaagtccaaagaagactgcatgaacaagtggag 676
||||||| |||||||| | ||| |||| ||||||||||||||||||
Sbjct: 530 tgagagcacagatggagatgcaacgaagcctgcatgaacaagtggag 576
Score = 42.1 bits (21), Expect = 0.066
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 126 ttggatccttcgcttttgggg 146
|||||||||||||||||||||
Sbjct: 32 ttggatccttcgcttttgggg 52
>gb|CV768700.1|CV768700 FGAS063091 Triticum aestivum FGAS: Library 2 Gate 3 Triticum
aestivum cDNA, mRNA sequence
Length = 834
Score = 363 bits (183), Expect = 1e-098
Identities = 398/467 (85%), Gaps = 7/467 (1%)
Strand = Plus / Plus
Query: 211 aggaggaagagatgttcccgcctggcctgatccaccaccgccctgacgcccccgttcccg 270
||||||| ||||||| || ||||||||||||||||||||| | |||| ||||| ||||
Sbjct: 268 aggaggagaagatgtttccccctggcctgatccaccaccgcacggacggccccgggcccg 327
Query: 271 gcgatggggcgacacgctccggccccggcgggccgagccttgtactgacggcggacccca 330
|||| | | || ||||||||| |||| ||| ||||| || || |||||||||||||
Sbjct: 328 gcgaggtgccg---cgctccggc---ggcgcgcccagcctcgtgctcacggcggacccca 381
Query: 331 agcccaggctgcggtggacggccgacctccacgagcgtttcgtcgacgccgtggcccagc 390
||||| | || |||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct: 382 agccccgactccggtggacggccgacctccacgagcgcttcgtcgacgccgtcgcccagc 441
Query: 391 tcggcggacccgagaaagcaacaccaaaaa-tatcttaaggacaatgggcgtcaagggtc 449
||||||| |||||||||||||||||||||| |||||||||||||||||| || ||||| |
Sbjct: 442 tcggcgggcccgagaaagcaacaccaaaaactatcttaaggacaatgggtgtaaagggac 501
Query: 450 ttactctttttcacttgaagagccatcttcagaaatacagattagggaaacaatctggta 509
| || ||||| ||||||||||| |||||||||||||||||| | ||||||||| |||| |
Sbjct: 502 taacgcttttccacttgaagagtcatcttcagaaatacagaatggggaaacaaactggga 561
Query: 510 aggagggatcagagcaatctaaagatgcatcctatcttctagatgctcaaagtggaatga 569
||||| | |||||||||||||||| || |||||||| ||||||||| |||||||||
Sbjct: 562 aggagacgccggagcaatctaaagatgggtcttatcttcttgatgctcaaggtggaatga 621
Query: 570 gcgtgtcccctagagttcctgcccaggatatgaaagaaagccaagaagttaaagaagcac 629
|| |||| || |||||| || | || ||| ||||||||| ||||||||||||||| | |
Sbjct: 622 gcctgtctcccagagtttctactcaagatgcgaaagaaagtcaagaagttaaagaacccc 681
Query: 630 tgagagcgcagatggaagtccaaagaagactgcatgaacaagtggag 676
||||||| |||||||| | ||| |||| ||||||||||||||||||
Sbjct: 682 tgagagcacagatggagatgcaacgaagcctgcatgaacaagtggag 728
Score = 42.1 bits (21), Expect = 0.066
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 126 ttggatccttcgcttttgggg 146
|||||||||||||||||||||
Sbjct: 184 ttggatccttcgcttttgggg 204
>gb|BF482856.1|BF482856 WHE2301-2304_L12_L12ZS Wheat pre-anthesis spike cDNA library
Triticum aestivum cDNA clone WHE2301-2304_L12_L12, mRNA
sequence
Length = 539
Score = 315 bits (159), Expect = 3e-084
Identities = 317/367 (86%), Gaps = 7/367 (1%)
Strand = Plus / Plus
Query: 211 aggaggaagagatgttcccgcctggcctgatccaccaccgccctgacgcccccgttcccg 270
||||||| ||||||||||| ||||||||||||||||||||| | |||| ||| | ||||
Sbjct: 177 aggaggaggagatgttcccccctggcctgatccaccaccgcgcggacggcccggggcccg 236
Query: 271 gcgatggggcgacacgctccggccccggcgggccgagccttgtactgacggcggacccca 330
|||| | | || ||||||||| |||| ||| ||||| || || |||||||||||||
Sbjct: 237 gcgaggtgccg---cgctccggc---ggcgcgcccagcctcgtgctcacggcggacccca 290
Query: 331 agcccaggctgcggtggacggccgacctccacgagcgtttcgtcgacgccgtggcccagc 390
|||||||||| |||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct: 291 agcccaggctccggtggacggccgacctccacgagcgcttcgtcgacgccgtcgcccagc 350
Query: 391 tcggcggacccgagaaagcaacaccaaaaa-tatcttaaggacaatgggcgtcaagggtc 449
||||||| |||||||||||||||||||||| |||||||||||||||||| || ||||| |
Sbjct: 351 tcggcgggcccgagaaagcaacaccaaaaactatcttaaggacaatgggtgtaaagggac 410
Query: 450 ttactctttttcacttgaagagccatcttcagaaatacagattagggaaacaatctggta 509
| || || || ||||||||||| |||||||||||||||||| | ||||||||| |||| |
Sbjct: 411 tcacgctgttccacttgaagagtcatcttcagaaatacagaatggggaaacaaactggca 470
Query: 510 aggagggatcagagcaatctaaagatgcatcctatcttctagatgctcaaagtggaatga 569
| ||| | |||||||||||||||| ||||||||||| ||||||||| |||||||||
Sbjct: 471 aagagacgccggagcaatctaaagatgggtcctatcttcttgatgctcaaggtggaatga 530
Query: 570 gcgtgtc 576
|| ||||
Sbjct: 531 gcctgtc 537
Score = 42.1 bits (21), Expect = 0.066
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 126 ttggatccttcgcttttgggg 146
|||||||||||||||||||||
Sbjct: 93 ttggatccttcgcttttgggg 113
>gb|BG607578.1|BG607578 WHE2480_F09_K18ZS Triticum monococcum early reproductive apex cDNA
library Triticum monococcum cDNA clone WHE2480_F09_K18,
mRNA sequence
Length = 346
Score = 266 bits (134), Expect = 2e-069
Identities = 259/298 (86%), Gaps = 7/298 (2%)
Strand = Plus / Plus
Query: 211 aggaggaagagatgttcccgcctggcctgatccaccaccgccctgacgcccccgttcccg 270
||||||| ||||||||||| ||||||||||||||||||||| | |||| ||| | ||||
Sbjct: 54 aggaggaggagatgttcccccctggcctgatccaccaccgcacggacggcccggggcccg 113
Query: 271 gcgatggggcgacacgctccggccccggcgggccgagccttgtactgacggcggacccca 330
|||| | | || ||||||||| |||| ||| ||||| || || ||||| |||||||
Sbjct: 114 gcgaggtgccg---cgctccggc---ggcgcgcccagcctcgtgctcacggccgacccca 167
Query: 331 agcccaggctgcggtggacggccgacctccacgagcgtttcgtcgacgccgtggcccagc 390
|||||||||| |||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct: 168 agcccaggctccggtggacggccgacctccacgagcgcttcgtcgacgccgtcgcccagc 227
Query: 391 tcggcggacccgagaaagcaacaccaaaaa-tatcttaaggacaatgggcgtcaagggtc 449
||||||| |||||||||||||||||||||| |||||||||||||||||| || ||||| |
Sbjct: 228 tcggcgggcccgagaaagcaacaccaaaaactatcttaaggacaatgggtgtaaagggac 287
Query: 450 ttactctttttcacttgaagagccatcttcagaaatacagattagggaaacaatctgg 507
| || || || ||||||||||| |||||||||||||||||| | ||||||||| ||||
Sbjct: 288 tcacgctgttccacttgaagagtcatcttcagaaatacagaatggggaaacaaactgg 345
>gb|CA657977.1|CA657977 wlm0.pk040.a3 wlm0 Triticum aestivum cDNA clone wlm0.pk040.a3 5'
end, mRNA sequence
Length = 494
Score = 252 bits (127), Expect = 4e-065
Identities = 289/341 (84%), Gaps = 7/341 (2%)
Strand = Plus / Plus
Query: 220 agatgttcccgcctggcctgatccaccaccgccctgacgcccccgttcccggcgatgggg 279
||||||| || ||||||||||||||||||||| | |||| ||||| |||||||| | |
Sbjct: 54 agatgtttccccctggcctgatccaccaccgcacggacggccccgggcccggcgaggtgc 113
Query: 280 cgacacgctccggccccggcgggccgagccttgtactgacggcggaccccaagcccaggc 339
|| ||||||||| |||| ||| ||||| || || |||||||||||||||||| | |
Sbjct: 114 cg---cgctccggc---ggcgcgcccagcctcgtgctcacggcggaccccaagccccgac 167
Query: 340 tgcggtggacggccgacctccacgagcgtttcgtcgacgccgtggcccagctcggcggac 399
| |||||||||| ||||||||||||||| |||||||||||||| |||||||||||||| |
Sbjct: 168 tccggtggacggncgacctccacgagcgcttcgtcgacgccgtcgcccagctcggcgggc 227
Query: 400 ccgagaaagcaacaccaaaaa-tatcttaaggacaatgggcgtcaagggtcttactcttt 458
||||||||||||||||||||| |||||||||||||||||| || ||||| || || ||||
Sbjct: 228 ccgagaaagcaacaccaaaaactatcttaaggacaatgggtgtaaagggactaacgcttt 287
Query: 459 ttcacttgaagagccatcttcagaaatacagattagggaaacaatctggtaaggagggat 518
| |||||||||| |||||||| ||||||| | | ||||||||| |||| ||||||
Sbjct: 288 tcnacttgaagagtcatcttcaaaaatacaaaatggggaaacaaactgggaaggagacgc 347
Query: 519 cagagcaatctaaagatgcatcctatcttctagatgctcaa 559
| |||||||||||||||| || |||||||| |||||||||
Sbjct: 348 cggagcaatctaaagatgggtcttatcttcttgatgctcaa 388
>gb|CA664775.1|CA664775 wlk1.pk0007.f7 wlk1 Triticum aestivum cDNA clone wlk1.pk0007.f7 5'
end, mRNA sequence
Length = 626
Score = 250 bits (126), Expect = 1e-064
Identities = 214/242 (88%), Gaps = 1/242 (0%)
Strand = Plus / Plus
Query: 346 ggacggccgacctccacgagcgtttcgtcgacgccgtggcccagctcggcggacccgaga 405
|||||||||||||||||||||| |||||||||||||| |||||||||||||| |||||||
Sbjct: 1 ggacggccgacctccacgagcgcttcgtcgacgccgtcgcccagctcggcgggcccgaga 60
Query: 406 aagcaacaccaaaaa-tatcttaaggacaatgggcgtcaagggtcttactctttttcact 464
||||||||||||||| |||||||||||||||||| || ||||| || || ||||| ||||
Sbjct: 61 aagcaacaccaaaaactatcttaaggacaatgggtgtaaagggactaacgcttttccact 120
Query: 465 tgaagagccatcttcagaaatacagattagggaaacaatctggtaaggagggatcagagc 524
||||||| |||||||||||||||||| | ||||||||| |||| |||||| | ||||
Sbjct: 121 tgaagagtcatcttcagaaatacagaatggggaaacaaactgggaaggagacgccggagc 180
Query: 525 aatctaaagatgcatcctatcttctagatgctcaaagtggaatgagcgtgtcccctagag 584
|||||||||||| || |||||||| ||||||||| ||||||||||| |||| || ||||
Sbjct: 181 aatctaaagatgggtcttatcttcttgatgctcaaggtggaatgagcctgtctcccagag 240
Query: 585 tt 586
||
Sbjct: 241 tt 242
>gb|CA643391.1|CA643391 wre1n.pk0065.e4 wre1n Triticum aestivum cDNA clone wre1n.pk0065.e4
5' end, mRNA sequence
Length = 574
Score = 234 bits (118), Expect = 9e-060
Identities = 243/281 (86%), Gaps = 8/281 (2%)
Strand = Plus / Plus
Query: 211 aggaggaagagatgttcccgcctggcctgatccaccaccgccctgacgcccccgttcccg 270
||||||| ||||||| || ||||||||||||||||||||| | |||| ||||| ||||
Sbjct: 10 aggaggagaagatgtttccccctggcctgatccaccaccgcacggacggccccgggcccg 69
Query: 271 gcgatggggcgacacgctccggccccggcgggccgagccttgtactgacggcggacccca 330
|||| | | || ||||||||| |||| ||| ||||| || || |||||||||||||
Sbjct: 70 gcgaggtgccg---cgctccggc---ggcgcgcccagcctcgtgctcacggcggacccca 123
Query: 331 agcccaggctgcggtggacggccgacctccacgagcgtttcgtcgacgccgtggcccagc 390
||||| | || |||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct: 124 agccccgactccggtggacggccgacctccacgagcgcttcgtcgacgccgtcgcccagc 183
Query: 391 tcggcggacccgagaaagcaacaccaaaaa-tatcttaaggacaatgggcgtcaagggtc 449
||||||| |||||||||||||||||||||| |||||||||||||||||| || ||||| |
Sbjct: 184 tcggcgggcccgagaaagcaacaccaaaaactatcttaaggacaatgggtgtaaagggac 243
Query: 450 ttactctttttcacttgaagagccatcttcagaaatacaga 490
| || ||||| |||||||||| ||||||||||||||||||
Sbjct: 244 taacgcttttccacttgaaga-ncatcttcagaaatacaga 283
>gb|CA663432.1|CA663432 wlmk1.pk0034.b8 wlmk1 Triticum aestivum cDNA clone wlmk1.pk0034.b8
5' end, mRNA sequence
Length = 547
Score = 216 bits (109), Expect = 2e-054
Identities = 242/281 (86%), Gaps = 9/281 (3%)
Strand = Plus / Plus
Query: 220 agatgttcccgcctggcctgatccaccaccgccctgacgcccccgttcccggcgatgggg 279
||||||| || ||||||||||||||||||||| | |||| ||||| |||||||| | |
Sbjct: 6 agatgtttccccctggcctgatccaccaccgcacggacggccccgggcccggcgaggtgc 65
Query: 280 cgacacgctccggccccggcgggccgagccttgtactgacggcggaccccaagcccaggc 339
|| ||||||||| |||| ||| ||||| || || |||||||||||||||||| | |
Sbjct: 66 cg---cgctccggc---ggcgcgcccagcctcgtgctcacggcggaccccaagccccgac 119
Query: 340 tgcggtggacggccgacctccacgagcgtttcgtcgacgccgtggcccagctcggcggac 399
| |||||||||||||||||||||||||| |||||||||||||| ||||| |||||||| |
Sbjct: 120 tccggtggacggccgacctccacgagcgcttcgtcgacgccgtcgccca-ctcggcgggc 178
Query: 400 ccgagaaagcaacaccaaaaa-tatcttaaggacaatgggcgtcaagggtcttactcttt 458
||||||||||||||||||||| |||||||||||||||||| || ||||| || || ||||
Sbjct: 179 ccgagaaagcaacaccaaaaactatcttaaggacaatgggtgtaaagggactaacgcttt 238
Query: 459 ttcacttgaagagccatcttcagaaatacagattagggaaa 499
| |||||||||| |||||||||||||||||| | ||||||
Sbjct: 239 tccacttgaaga-tcatcttcagaaatacagaatggggaaa 278
Score = 54.0 bits (27), Expect = 2e-005
Identities = 45/50 (90%), Gaps = 1/50 (2%)
Strand = Plus / Plus
Query: 521 gagcaatctaaagatgcatcctatcttc-tagatgctcaaagtggaatga 569
|||||||||||||||| || ||||||| | |||||||||||||||||||
Sbjct: 300 gagcaatctaaagatgggtcntatcttccttgatgctcaaagtggaatga 349
>gb|BJ209142.1|BJ209142 BJ209142 Y. Ogihara unpublished cDNA library, Wh Triticum aestivum
cDNA clone wh12n08 5', mRNA sequence
Length = 569
Score = 202 bits (102), Expect = 3e-050
Identities = 223/262 (85%), Gaps = 1/262 (0%)
Strand = Plus / Plus
Query: 416 aaaaatatcttaaggacaatgggcgtcaagggtcttactctttttcacttgaagagccat 475
|||| |||||||||||||||||| || ||||| || || || || ||||||||||| |||
Sbjct: 3 aaaactatcttaaggacaatgggtgtaaagggactcacgctgttccacttgaagagtcat 62
Query: 476 cttcagaaatacagattagggaaacaatctggtaaggagggatcagagcaatctaaagat 535
||||||||||||||| | ||||||||| |||| || ||| | |||||||||||||||
Sbjct: 63 cttcagaaatacagaatggggaaacaaactggcaaagagacgccggagcaatctaaagat 122
Query: 536 gcatcctatcttctagatgctcaaagtggaatgagcgtgtcccctag-agttcctgccca 594
| ||||||||||| ||||||||| ||||||||||| |||| || || |||| || ||||
Sbjct: 123 gggtcctatcttcttgatgctcaaggtggaatgagcctgtctcccagnagtttctaccca 182
Query: 595 ggatatgaaagaaagccaagaagttaaagaagcactgagagcgcagatggaagtccaaag 654
||| ||||||||| ||||||||||||||||| |||||||| ||||||||| | ||| |
Sbjct: 183 agatgcgaaagaaagtcaagaagttaaagaagccctgagagcacagatggaaatgcaacg 242
Query: 655 aagactgcatgaacaagtggag 676
||| ||||||||||||||||||
Sbjct: 243 aagcctgcatgaacaagtggag 264
>gb|CA646712.1|CA646712 wre1n.pk0114.a11 wre1n Triticum aestivum cDNA clone
wre1n.pk0114.a11 5' end, mRNA sequence
Length = 650
Score = 159 bits (80), Expect = 4e-037
Identities = 173/204 (84%)
Strand = Plus / Plus
Query: 473 catcttcagaaatacagattagggaaacaatctggtaaggagggatcagagcaatctaaa 532
|||||||||||||||||| | ||||||||| |||| |||||| | ||||||||||||
Sbjct: 3 catcttcagaaatacagaatggggaaacaaactgggaaggagacgccggagcaatctaaa 62
Query: 533 gatgcatcctatcttctagatgctcaaagtggaatgagcgtgtcccctagagttcctgcc 592
|||| || |||||||| ||||||||| ||||||||||| |||| || |||||| || |
Sbjct: 63 gatgggtcttatcttcttgatgctcaaggtggaatgagcctgtctcccagagtttctact 122
Query: 593 caggatatgaaagaaagccaagaagttaaagaagcactgagagcgcagatggaagtccaa 652
|| ||| ||||||||| ||||||||||||||||| |||||||| |||||||| | |||
Sbjct: 123 caagatgcgaaagaaagtcaagaagttaaagaagccctgagagcacagatggagatgcaa 182
Query: 653 agaagactgcatgaacaagtggag 676
|||| ||||||||||||||||||
Sbjct: 183 cgaagcctgcatgaacaagtggag 206
>gb|CA652234.1|CA652234 wre1n.pk0119.d2 wre1n Triticum aestivum cDNA clone wre1n.pk0119.d2
5' end, mRNA sequence
Length = 566
Score = 127 bits (64), Expect = 1e-027
Identities = 206/248 (83%), Gaps = 4/248 (1%)
Strand = Plus / Plus
Query: 429 ggacaatgggcgtcaagggtcttactctttttcacttgaagagccatcttcagaaataca 488
|||||||||| || ||||| || || ||||| ||||||||||| ||||||||||||||||
Sbjct: 1 ggacaatgggtgtaaagggactaacgcttttccacttgaagagtcatcttcagaaataca 60
Query: 489 gattagggaaacaatctggtaaggagggatcagagcaatctaaagatgcatcctatcttc 548
|| | || |||||| |||| |||||| | |||||||||||||||| ||||| ||||
Sbjct: 61 gaatgggaaaacaaactgggaaggagacgccggagcaatctaaagatgggtcctaccttc 120
Query: 549 tagatgctcaaagtggaatgagcgtgtcccctagagttcctgcccaggatatgaaagaaa 608
| ||||||||| ||||||||||| |||| || |||||| || | || ||| ||||||||
Sbjct: 121 ttgatgctcaaggtggaatgagcctgtctcccagagtttctactcaagatgcgaaagaaa 180
Query: 609 gccaagaagttaaagaagcactgagagcgcagatggaagtccaaagaagactgcatgaac 668
| |||||| |||||||| | |||||||| |||||||| | ||| ||| ||||||||||
Sbjct: 181 g-caagaa-ttaaagaa-ccctgagagcacagatggagatgcaacgaa-cctgcatgaac 236
Query: 669 aagtggag 676
||||||||
Sbjct: 237 aagtggag 244
>gb|CK169018.1|CK169018 FGAS043621 Triticum aestivum FGAS: TaLt6 Triticum aestivum cDNA,
mRNA sequence
Length = 873
Score = 113 bits (57), Expect = 2e-023
Identities = 177/213 (83%), Gaps = 3/213 (1%)
Strand = Plus / Minus
Query: 464 ttgaagagccatcttcagaaatacagattagggaaacaatctggtaaggagggatcagag 523
|||||||| ||||||||||| |||||| | ||||||||| |||| |||||| | |||
Sbjct: 849 ttgaagagtcatcttcagaa-tacagaat-gggaaacaa-ctgggaaggagacgccggag 793
Query: 524 caatctaaagatgcatcctatcttctagatgctcaaagtggaatgagcgtgtcccctaga 583
||||||||||||| || |||||| |||||||| ||||||||||| |||| || |||
Sbjct: 792 caatctaaagatgggtctattcttctgaatgctcaaggtggaatgagcctgtctcccaga 733
Query: 584 gttcctgcccaggatatgaaagaaagccaagaagttaaagaagcactgagagcgcagatg 643
||| || | || ||| ||||||||| ||||||||||||||||| |||||||| ||||||
Sbjct: 732 gtttctactcaagatgcgaaagaaagtcaagaagttaaagaagccctgagagcacagatg 673
Query: 644 gaagtccaaagaagactgcatgaacaagtggag 676
|| | ||| |||| ||||||||||||||||||
Sbjct: 672 gagatgcaacgaagcctgcatgaacaagtggag 640
>gb|BQ168954.1|BQ168954 WHE2480_F09_K18ZT Triticum monococcum early reproductive apex cDNA
library Triticum monococcum cDNA clone WHE2480_F09_K18,
mRNA sequence
Length = 602
Score = 111 bits (56), Expect = 9e-023
Identities = 101/116 (87%)
Strand = Plus / Minus
Query: 561 gtggaatgagcgtgtcccctagagttcctgcccaggatatgaaagaaagccaagaagtta 620
||||||||||| |||| || |||||| || |||| ||| ||||||||| ||||||||||
Sbjct: 601 gtggaatgagcctgtctcccagagtttctacccaagatgcgaaagaaagtcaagaagtta 542
Query: 621 aagaagcactgagagcgcagatggaagtccaaagaagactgcatgaacaagtggag 676
||||||| |||||||| ||||||||| | ||| |||| ||||||||||||||||||
Sbjct: 541 aagaagccctgagagcacagatggaaatgcaacgaagcctgcatgaacaagtggag 486
>gb|CA654278.1|CA654278 wre1n.pk194.h8 wre1n Triticum aestivum cDNA clone wre1n.pk194.h8 5'
end, mRNA sequence
Length = 543
Score = 87.7 bits (44), Expect = 1e-015
Identities = 68/76 (89%)
Strand = Plus / Plus
Query: 601 gaaagaaagccaagaagttaaagaagcactgagagcgcagatggaagtccaaagaagact 660
||||||||| ||||||||||||||||| |||||||| |||||||| | ||| |||| ||
Sbjct: 17 gaaagaaagtcaagaagttaaagaagccctgagagcacagatggagatgcaacgaagcct 76
Query: 661 gcatgaacaagtggag 676
||||||||||||||||
Sbjct: 77 gcatgaacaagtggag 92
>gb|CD932011.1|CD932011 GR45.116H06F010420 GR45 Triticum aestivum cDNA clone GR45116H06,
mRNA sequence
Length = 536
Score = 83.8 bits (42), Expect = 2e-014
Identities = 124/150 (82%), Gaps = 6/150 (4%)
Strand = Plus / Plus
Query: 211 aggaggaagagatgttcccgcctggcctgatccaccaccgccctgacgcccccgttcccg 270
||||||| ||||||||||| ||||||||||||||||||||| | |||| ||||| ||||
Sbjct: 393 aggaggaggagatgttcccccctggcctgatccaccaccgcacggacggccccgggcccg 452
Query: 271 gcgatggggcgacacgctccggccccggcgggccgagccttgtactgacggcggacccca 330
|||| || | | |||||||| ||||| || ||||| || || |||||||||||||
Sbjct: 453 gcga---ggtgccgcgctccgg---cggcgcccccagcctcgtgctcacggcggacccca 506
Query: 331 agcccaggctgcggtggacggccgacctcc 360
||||| | || || ||||||||||||||||
Sbjct: 507 agccccgcctccgctggacggccgacctcc 536
Score = 42.1 bits (21), Expect = 0.066
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 126 ttggatccttcgcttttgggg 146
|||||||||||||||||||||
Sbjct: 297 ttggatccttcgcttttgggg 317
>gb|CA693845.1|CA693845 wlmk4.pk0010.e7 wlmk4 Triticum aestivum cDNA clone wlmk4.pk0010.e7
5' end, mRNA sequence
Length = 639
Score = 73.8 bits (37), Expect = 2e-011
Identities = 70/81 (86%)
Strand = Plus / Plus
Query: 323 ggaccccaagcccaggctgcggtggacggccgacctccacgagcgtttcgtcgacgccgt 382
||||||||||||| ||||||| |||||| ||||||| |||||||| ||||| || |||||
Sbjct: 71 ggaccccaagccccggctgcgctggacgcccgacctgcacgagcgcttcgtggaggccgt 130
Query: 383 ggcccagctcggcggacccga 403
|| |||||||||| |||||
Sbjct: 131 caccaagctcggcgggcccga 151
>gb|CV769268.1|CV769268 FGAS063659 Triticum aestivum FGAS: Library 2 Gate 3 Triticum
aestivum cDNA, mRNA sequence
Length = 877
Score = 73.8 bits (37), Expect = 2e-011
Identities = 70/81 (86%)
Strand = Plus / Plus
Query: 323 ggaccccaagcccaggctgcggtggacggccgacctccacgagcgtttcgtcgacgccgt 382
||||||||||||| ||||||| |||||| ||||||| |||||||| ||||| || |||||
Sbjct: 481 ggaccccaagccccggctgcgctggacgcccgacctgcacgagcgcttcgtggaggccgt 540
Query: 383 ggcccagctcggcggacccga 403
|| |||||||||| |||||
Sbjct: 541 caccaagctcggcgggcccga 561
>gb|CK210012.1|CK210012 FGAS021803 Triticum aestivum FGAS: Library 5 GATE 7 Triticum
aestivum cDNA, mRNA sequence
Length = 1103
Score = 71.9 bits (36), Expect = 7e-011
Identities = 69/80 (86%)
Strand = Plus / Plus
Query: 324 gaccccaagcccaggctgcggtggacggccgacctccacgagcgtttcgtcgacgccgtg 383
||||||||||| | || |||||||||| || ||||| ||||| ||||||||||||||
Sbjct: 436 gaccccaagccgcgcctccggtggacggtggagctccatgagcgcttcgtcgacgccgtc 495
Query: 384 gcccagctcggcggacccga 403
|||||||||||||| |||||
Sbjct: 496 gcccagctcggcggccccga 515
>gb|BQ839311.1|BQ839311 WHE4164_F10_K20ZS Wheat CS whole plant cDNA library Triticum
aestivum cDNA clone WHE4164_F10_K20, mRNA sequence
Length = 728
Score = 63.9 bits (32), Expect = 2e-008
Identities = 59/68 (86%)
Strand = Plus / Plus
Query: 324 gaccccaagcccaggctgcggtggacggccgacctccacgagcgtttcgtcgacgccgtg 383
|||||||||||| | || |||||||||| ||| |||||||| ||||||||||| |||||
Sbjct: 272 gaccccaagccccgcctccggtggacggtcgagctccacgaccgtttcgtcgatgccgtc 331
Query: 384 gcccagct 391
|| |||||
Sbjct: 332 gcgcagct 339
>gb|CD934392.1|CD934392 OV.001B06R010412 OV Triticum aestivum cDNA clone OV001B06, mRNA
sequence
Length = 604
Score = 60.0 bits (30), Expect = 3e-007
Identities = 57/66 (86%)
Strand = Plus / Minus
Query: 611 caagaagttaaagaagcactgagagcgcagatggaagtccaaagaagactgcatgaacaa 670
|||| |||||||||||| |||||||| |||||||| ||| |||| ||||||||||||
Sbjct: 597 caaggagttaaagaagccctgagagcacagatggagaggcaacgaagcctgcatgaacaa 538
Query: 671 gtggag 676
||||||
Sbjct: 537 gtggag 532
>gb|CD938571.1|CD938571 OV.110F23F010309 OV Triticum aestivum cDNA clone OV110F23, mRNA
sequence
Length = 624
Score = 60.0 bits (30), Expect = 3e-007
Identities = 48/54 (88%)
Strand = Plus / Plus
Query: 623 gaagcactgagagcgcagatggaagtccaaagaagactgcatgaacaagtggag 676
||||| |||||||| ||||||||| | ||| |||| ||||||||||||||||||
Sbjct: 1 gaagccctgagagcacagatggaaatgcaacgaagcctgcatgaacaagtggag 54
>gb|DN829128.1|DN829128 KUCD01_06_C09_T3 WSWR cDNA library Triticum aestivum cDNA, mRNA
sequence
Length = 854
Score = 44.1 bits (22), Expect = 0.017
Identities = 40/46 (86%)
Strand = Plus / Plus
Query: 631 gagagcgcagatggaagtccaaagaagactgcatgaacaagtggag 676
|||||| |||||||| | ||| |||| ||||||||||||||||||
Sbjct: 8 gagagcacagatggagatgcaacgaagcctgcatgaacaagtggag 53
>gb|DN829560.1|DN829560 KUCD01_10_A04_T3 WSWR cDNA library Triticum aestivum cDNA, mRNA
sequence
Length = 949
Score = 44.1 bits (22), Expect = 0.017
Identities = 40/46 (86%)
Strand = Plus / Plus
Query: 631 gagagcgcagatggaagtccaaagaagactgcatgaacaagtggag 676
|||||| |||||||| | ||| |||| ||||||||||||||||||
Sbjct: 40 gagagcacagatggagatgcaacgaagcctgcatgaacaagtggag 85
>gb|CA497387.1|CA497387 WHE3226_H07_O14ZT Wheat meiotic anther cDNA library Triticum
aestivum cDNA clone WHE3226_H07_O14, mRNA sequence
Length = 263
Score = 40.1 bits (20), Expect = 0.26
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 286 gctccggccccggcgggccgagcc 309
||||||||||||||||| ||||||
Sbjct: 137 gctccggccccggcggggcgagcc 114
>gb|DR736538.1|DR736538 FGAS081908 Triticum aestivum FGAS: Library 5 GATE 7 Triticum
aestivum cDNA, mRNA sequence
Length = 1100
Score = 40.1 bits (20), Expect = 0.26
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 42 cagtggaaagcggcactagcagcagggc 69
|||||| |||||||| ||||||||||||
Sbjct: 675 cagtggcaagcggcaatagcagcagggc 648
Database: Triticum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 3:01 PM
Number of letters in database: 367,240,239
Number of sequences in database: 636,343
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 193,990
Number of Sequences: 636343
Number of extensions: 193990
Number of successful extensions: 55038
Number of sequences better than 0.5: 27
Number of HSP's better than 0.5 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 54954
Number of HSP's gapped (non-prelim): 55
length of query: 915
length of database: 367,240,239
effective HSP length: 19
effective length of query: 896
effective length of database: 355,149,722
effective search space: 318214150912
effective search space used: 318214150912
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)