BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 44956.2.1
(1252 letters)
Database: Triticum_nucl_with_EST.fasta
636,343 sequences; 367,240,239 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BF473272.1|BF473272 WHE0926_E12_I24ZS Wheat 5-15 DAP spi... 537 e-151
gb|BF484665.1|BF484665 WHE2318_C05_E10ZS Wheat pre-anthesis... 446 e-123
gb|CV775421.1|CV775421 FGAS069825 Triticum aestivum FGAS: L... 422 e-116
gb|BE426706.1|BE426706 WHE0331_D03_H05ZS Wheat unstressed s... 406 e-111
gb|CK156412.1|CK156412 FGAS037379 Triticum aestivum FGAS: T... 363 2e-098
gb|CA644839.1|CA644839 wre1n.pk0093.g12 wre1n Triticum aest... 311 6e-083
gb|CD917105.1|CD917105 G608.104A13F010905 G608 Triticum aes... 309 3e-082
gb|CA640303.1|CA640303 wre1n.pk0033.e9 wre1n Triticum aesti... 299 2e-079
gb|BG606649.1|BG606649 WHE2451_C05_E09ZS Triticum monococcu... 250 2e-064
gb|BQ487478.1|BQ487478 WHE2451_C05_E09ZY Triticum monococcu... 244 1e-062
gb|CA606078.1|CA606078 wr1.pk0058.f8 wr1 Triticum aestivum ... 224 1e-056
gb|CV758564.1|CV758564 FGAS053009 Triticum aestivum FGAS: L... 206 3e-051
gb|CA608116.1|CA608116 wr1.pk0085.c7 wr1 Triticum aestivum ... 174 1e-041
gb|CV758664.1|CV758664 FGAS052940 Triticum aestivum FGAS: L... 172 4e-041
gb|CA732117.1|CA732117 wlp1c.pk003.i17 wlp1c Triticum aesti... 149 5e-034
gb|DR733165.1|DR733165 FGAS078926 Triticum aestivum FGAS: L... 70 4e-010
gb|CD931707.1|CD931707 GR45.115F07F010420 GR45 Triticum aes... 46 0.006
gb|CD893978.1|CD893978 G118.125B06F010828 G118 Triticum aes... 44 0.023
gb|CD893979.1|CD893979 G118.125B06R011115 G118 Triticum aes... 44 0.023
gb|BE516595.1|BE516595 WHE0630_C09_E18ZA Wheat ABA-treated ... 42 0.091
gb|CA683011.1|CA683011 wlm96.pk0012.e4 wlm96 Triticum aesti... 42 0.091
gb|CN010969.1|CN010969 WHE3878_D02_H04ZS Wheat Fusarium gra... 42 0.091
gb|BQ903979.1|BQ903979 Ta03_22b02_R Ta03_AAFC_ECORC_Fusariu... 40 0.36
gb|BJ213415.1|BJ213415 BJ213415 Y. Ogihara unpublished cDNA... 40 0.36
gb|BJ302062.1|BJ302062 BJ302062 Y. Ogihara unpublished cDNA... 40 0.36
gb|BJ314425.1|BJ314425 BJ314425 Y. Ogihara unpublished cDNA... 40 0.36
gb|CA597691.1|CA597691 wpa1c.pk015.p10 wpa1c Triticum aesti... 40 0.36
gb|CA600075.1|CA600075 waw1c.pk006.e24 waw1c Triticum aesti... 40 0.36
gb|CA698884.1|CA698884 wlk8.pk0009.g1 wlk8 Triticum aestivu... 40 0.36
gb|CA727334.1|CA727334 wde1f.pk003.f19 wde1f Triticum aesti... 40 0.36
gb|CA729234.1|CA729234 wdi1c.pk006.c24 wdi1c Triticum aesti... 40 0.36
gb|CA730946.1|CA730946 wip1c.pk007.o3 wip1c Triticum aestiv... 40 0.36
gb|CD934344.1|CD934344 GR45.123O19F010723 GR45 Triticum aes... 40 0.36
gb|CD934926.1|CD934926 OV.002F18F010109 OV Triticum aestivu... 40 0.36
gb|CD937199.1|CD937199 OV.106E18F010205 OV Triticum aestivu... 40 0.36
gb|CF133081.1|CF133081 WHE4353_G11_N21ZT Wheat meiotic flor... 40 0.36
gb|CK209310.1|CK209310 FGAS021071 Triticum aestivum FGAS: L... 40 0.36
gb|CN012105.1|CN012105 WHE3892_F02_K04ZS Wheat Fusarium gra... 40 0.36
gb|CV769598.1|CV769598 FGAS063989 Triticum aestivum FGAS: L... 40 0.36
gb|CV771187.1|CV771187 FGAS065580 Triticum aestivum FGAS: L... 40 0.36
gb|CV774274.1|CV774274 FGAS068672 Triticum aestivum FGAS: L... 40 0.36
gb|CV779502.1|CV779502 FGAS073911 Triticum aestivum FGAS: L... 40 0.36
gb|DR736463.1|DR736463 FGAS081833 Triticum aestivum FGAS: L... 40 0.36
>gb|BF473272.1|BF473272 WHE0926_E12_I24ZS Wheat 5-15 DAP spike cDNA library Triticum
aestivum cDNA clone WHE0926_E12_I24, mRNA sequence
Length = 692
Score = 537 bits (271), Expect = e-151
Identities = 454/515 (88%)
Strand = Plus / Minus
Query: 484 taattagcttggccaacattgccagtaagaccaactacagatgcaatgttgataattttt 543
||||||||||||||| ||||||||||||||||||| || ||||| |||||||| | | ||
Sbjct: 683 taattagcttggccagcattgccagtaagaccaacaactgatgctatgttgatgactctt 624
Query: 544 ccctttctctttttcatcattacttttgttgcagcctgtgtacaaaggaagacaccagta 603
|||||| |||| ||||||||||||||||| |||||||||||||| ||||| |||||||||
Sbjct: 623 ccctttttcttcttcatcattacttttgtggcagcctgtgtacagaggaaaacaccagta 564
Query: 604 agattcagatcaattacgtcttgccactgagatttcttcatcctcatcaacaatgtgtct 663
||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct: 563 agatttagatcaattacatcttgccactgagatttcttcatcctcatcaacaatgtatcc 504
Query: 664 cgtgtaatccctgcattatttaccagcacatctattgttccccatttatctagagctgct 723
| ||||||||||||||||||||||| | || ||||||||||||||||| |||||||||
Sbjct: 503 ctcgtaatccctgcattatttaccaggatgtcaattgttccccatttatcaagagctgct 444
Query: 724 ttcatcatagactctacatcagcttcttttgaaacatctcctccgaaggtgatagcctca 783
||||||||||| ||||||||||||||||| |||||||||||||| ||||| ||||||| |
Sbjct: 443 ttcatcatagattctacatcagcttctttagaaacatctcctccaaaggtaatagcctga 384
Query: 784 ccaccagatgcttcaatctctttggagacctcttcagcctctttcgaggaccgggcatag 843
|||||||||||||||||||||| |||||| ||||||||||||||||||| || |||||
Sbjct: 383 ccaccagatgcttcaatctcttcggagactgcttcagcctctttcgaggatcgtgcataa 324
Query: 844 tttaccagaaccttgcatcctgcttttccaagggctagagcagttgccttaccaatccct 903
|| || || |||||||| || ||||||||||| || | ||| || || |||||||||
Sbjct: 323 ttcactaggaccttgcagccagcttttccaagagccaatgcaacggcttttccaatccct 264
Query: 904 ctagatgcacctgtaacaacaacaactggagcttccagcttggtagcatcttttacaatt 963
|| || ||||| ||||||||||||||||||||||||| || |||||||||| |||| |
Sbjct: 263 ctggaagcacccgtaacaacaacaactggagcttccacctctgtagcatcttgcacaact 204
Query: 964 gcttgttcaacagcggcaacatgggtttgcacacc 998
|||||||||||||| ||||| ||||| |||||||
Sbjct: 203 gcttgttcaacagcagcaacgtgggtgcgcacacc 169
>gb|BF484665.1|BF484665 WHE2318_C05_E10ZS Wheat pre-anthesis spike cDNA library Triticum
aestivum cDNA clone WHE2318_C05_E10, mRNA sequence
Length = 589
Score = 446 bits (225), Expect = e-123
Identities = 381/433 (87%)
Strand = Plus / Minus
Query: 566 cttttgttgcagcctgtgtacaaaggaagacaccagtaagattcagatcaattacgtctt 625
||||||| |||||||||||||| ||||| |||||||||||||| ||||||||||| ||||
Sbjct: 589 cttttgtggcagcctgtgtacagaggaaaacaccagtaagatttagatcaattacatctt 530
Query: 626 gccactgagatttcttcatcctcatcaacaatgtgtctcgtgtaatccctgcattattta 685
|||||||||||||||||||||||||||||||||| || | |||||||||||||||||||
Sbjct: 529 gccactgagatttcttcatcctcatcaacaatgtatccctcgtaatccctgcattattta 470
Query: 686 ccagcacatctattgttccccatttatctagagctgctttcatcatagactctacatcag 745
|||| | || ||||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct: 469 ccaggatgtcaattgttccccatttatcaagagctgctttcatcatagattctacatcag 410
Query: 746 cttcttttgaaacatctcctccgaaggtgatagcctcaccaccagatgcttcaatctctt 805
||||||| |||||||||||||| ||||| ||||||| |||||||||||||||||||||||
Sbjct: 409 cttctttagaaacatctcctccaaaggtaatagcctgaccaccagatgcttcaatctctt 350
Query: 806 tggagacctcttcagcctctttcgaggaccgggcatagtttaccagaaccttgcatcctg 865
|||||| ||||||||||||||||||| || ||||| || || || |||||||| || |
Sbjct: 349 cggagactgcttcagcctctttcgaggatcgtgcataattcactaggaccttgcagccag 290
Query: 866 cttttccaagggctagagcagttgccttaccaatccctctagatgcacctgtaacaacaa 925
|||||||||| || | ||| || || ||||||||||| || ||||| ||||||||||
Sbjct: 289 cttttccaagagccaatgcaacggcttttccaatccctctggaagcacccgtaacaacaa 230
Query: 926 caactggagcttccagcttggtagcatcttttacaattgcttgttcaacagcggcaacat 985
||||||||||||||| || |||||||||| |||| ||||||||||||||| ||||| |
Sbjct: 229 caactggagcttccacctctgtagcatcttgcacaactgcttgttcaacagcagcaacgt 170
Query: 986 gggtttgcacacc 998
|||| |||||||
Sbjct: 169 gggtgcgcacacc 157
>gb|CV775421.1|CV775421 FGAS069825 Triticum aestivum FGAS: Library 2 Gate 3 Triticum
aestivum cDNA, mRNA sequence
Length = 834
Score = 422 bits (213), Expect = e-116
Identities = 399/457 (87%), Gaps = 3/457 (0%)
Strand = Plus / Minus
Query: 542 ttccctttctctttttcatcattacttttgttgcagcctgtgtacaaaggaagacaccag 601
|||||||| |||| |||||||||||||||| |||||||| ||||| ||||| |||||||
Sbjct: 815 ttcccttt-tcttcttcatcattacttttggggcagcctg-gtacagaggaaaacaccag 758
Query: 602 taagattcagatcaattacgtcttgccactgagatttcttcatcctcatcaacaatgtgt 661
|| |||| ||||||||||| |||||||||||||||||||||||| ||||||||||||| |
Sbjct: 757 taggatttagatcaattacatcttgccactgagatttcttcatcttcatcaacaatgtat 698
Query: 662 ctcgtgtaatccctgcattatttaccagcacatctattgttccccatttatctagagctg 721
| | ||||||||||||||||||||||| | || ||||| ||||||||||| |||||||
Sbjct: 697 ccctcgtaatccctgcattatttaccaggatgtcaattgt-ccccatttatcaagagctg 639
Query: 722 ctttcatcatagactctacatcagcttcttttgaaacatctcctccgaaggtgatagcct 781
||||||||||||| ||||||||||||||||| |||||||||||||| ||||| |||||||
Sbjct: 638 ctttcatcatagattctacatcagcttctttagaaacatctcctccaaaggtaatagcct 579
Query: 782 caccaccagatgcttcaatctctttggagacctcttcagcctctttcgaggaccgggcat 841
||||||||||||||||||||||| |||||| ||||||||||||||||||| || ||||
Sbjct: 578 gaccaccagatgcttcaatctcttcggagactgcttcagcctctttcgaggatcgtgcat 519
Query: 842 agtttaccagaaccttgcatcctgcttttccaagggctagagcagttgccttaccaatcc 901
| || || || |||||||| || ||||||||||| || | ||| || || |||||||
Sbjct: 518 aattcactaggaccttgcaaccagcttttccaagagccaatgcaacggcttttccaatcc 459
Query: 902 ctctagatgcacctgtaacaacaacaactggagcttccagcttggtagcatcttttacaa 961
|||| || ||||| |||||||||||||||||||||||||||| |||||||||| ||||
Sbjct: 458 ctctggaagcacccgtaacaacaacaactggagcttccagctctgtagcatcttgcacaa 399
Query: 962 ttgcttgttcaacagcggcaacatgggtttgcacacc 998
||||||||||||||| ||||| ||||| |||||||
Sbjct: 398 ctgcttgttcaacagcagcaacgtgggtgcgcacacc 362
>gb|BE426706.1|BE426706 WHE0331_D03_H05ZS Wheat unstressed seedling shoot cDNA library
Triticum aestivum cDNA clone WHE0331_D03_H05, mRNA
sequence
Length = 657
Score = 406 bits (205), Expect = e-111
Identities = 352/401 (87%)
Strand = Plus / Minus
Query: 598 ccagtaagattcagatcaattacgtcttgccactgagatttcttcatcctcatcaacaat 657
||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 657 ccagtaagatttagatcaattacatcttgccactgagatttcttcatcctcatcaacaat 598
Query: 658 gtgtctcgtgtaatccctgcattatttaccagcacatctattgttccccatttatctaga 717
|| || | ||||||||||||||||||||||| | || ||||||||||||||||| |||
Sbjct: 597 gtatccctcgtaatccctgcattatttaccaggatgtcaattgttccccatttatcaaga 538
Query: 718 gctgctttcatcatagactctacatcagcttcttttgaaacatctcctccgaaggtgata 777
||||||||||||||||| ||||||||||||||||| |||||||||||||| ||||| |||
Sbjct: 537 gctgctttcatcatagattctacatcagcttctttagaaacatctcctccaaaggtaata 478
Query: 778 gcctcaccaccagatgcttcaatctctttggagacctcttcagcctctttcgaggaccgg 837
|||| ||||||||||||||||||||||| |||||| ||||||||||||||||||| ||
Sbjct: 477 gcctgaccaccagatgcttcaatctcttcggagactgcttcagcctctttcgaggatcgt 418
Query: 838 gcatagtttaccagaaccttgcatcctgcttttccaagggctagagcagttgccttacca 897
||||| || || || |||||||| || ||||||||||| || | ||| || || |||
Sbjct: 417 gcataattcactaggaccttgcagccagcttttccaagagccaatgcaacggcttttcca 358
Query: 898 atccctctagatgcacctgtaacaacaacaactggagcttccagcttggtagcatctttt 957
|||||||| || ||||| ||||||||||||||||||||||||| || ||||||||||
Sbjct: 357 atccctctggaagcacccgtaacaacaacaactggagcttccacctctgtagcatcttgc 298
Query: 958 acaattgcttgttcaacagcggcaacatgggtttgcacacc 998
|||| ||||||||||||||| ||||| ||||| |||||||
Sbjct: 297 acaactgcttgttcaacagcagcaacgtgggtgcgcacacc 257
>gb|CK156412.1|CK156412 FGAS037379 Triticum aestivum FGAS: TaLt4 Triticum aestivum cDNA,
mRNA sequence
Length = 876
Score = 363 bits (183), Expect = 2e-098
Identities = 339/391 (86%)
Strand = Plus / Plus
Query: 203 acattaccatccctccgtcaattgtaagcacctgtccagtcatatagctagctgcggggt 262
||||||||||||| || || || ||||||||||||||||| || ||||| || ||||| |
Sbjct: 451 acattaccatcccaccatcgatggtaagcacctgtccagtgatgtagctggccgcgggat 510
Query: 263 taagggccaggaactcgaccaaccctgcaacttcctctggttggccatatctccctaacg 322
| |||||| |||||| |||||||| |||||||||||||| |||||||| ||||| || |
Sbjct: 511 tcggggccaagaactcaaccaacccagcaacttcctctggctggccatacctccccaagg 570
Query: 323 gaatggttgacaagattttcttctcaagctcttctccaagttcggcagtcatatcagatg 382
|||| || ||||||||| ||||||||| ||| ||||||||||| || ||||| || ||||
Sbjct: 571 gaatagtcgacaagattctcttctcaacctcctctccaagttccgcggtcatgtctgatg 630
Query: 383 caatgaaccctggtgcaatagcattcacattgatatttctgcttgcatactccctggcaa 442
| ||||| || ||||| || ||||||||||||||||| ||||||||||| ||||| ||||
Sbjct: 631 ctatgaatccaggtgcgattgcattcacattgatattcctgcttgcatattccctagcaa 690
Query: 443 ctgtttttgtgaaaccaatcactccagccttggctgcgctataattagcttggccaacat 502
||||||| ||||||||||| |||||||||||||| || || ||||||||||||||| |||
Sbjct: 691 ctgttttagtgaaaccaatgactccagccttggcagcactgtaattagcttggccagcat 750
Query: 503 tgccagtaagaccaactacagatgcaatgttgataatttttccctttctctttttcatca 562
|||||||||||||||| || ||||| |||||||| | | |||||||| || | |||||||
Sbjct: 751 tgccagtaagaccaacaactgatgctatgttgatgactcttccctttttcctcttcatca 810
Query: 563 ttacttttgttgcagcctgtgtacaaaggaa 593
|||||||||| |||||||||||||| |||||
Sbjct: 811 ttacttttgtggcagcctgtgtacagaggaa 841
>gb|CA644839.1|CA644839 wre1n.pk0093.g12 wre1n Triticum aestivum cDNA clone
wre1n.pk0093.g12 5' end, mRNA sequence
Length = 610
Score = 311 bits (157), Expect = 6e-083
Identities = 299/341 (87%), Gaps = 4/341 (1%)
Strand = Plus / Minus
Query: 280 accaaccctgcaacttcctctggttggccatatctccctaacggaatggttgacaagatt 339
|||||||| |||| ||||||||| |||||||| ||||| || ||||| || |||||| ||
Sbjct: 339 accaacccagcaa-ttcctctggctggccatacctccccaaaggaatagtcgacaag-tt 282
Query: 340 ttcttctcaagctcttctccaagttcggcagtcatatcagatgcaatgaa-ccctggtgc 398
||||||||||||| ||||||||||| || ||||| || ||||| ||||| ||| |||||
Sbjct: 281 ctcttctcaagctcctctccaagttccgcggtcatgtctgatgctatgaatcccaggtgc 222
Query: 399 aatagcattcacattgatatttctgcttgcatactccctggcaactgtttttgtgaaacc 458
|| ||||||||||||||||| ||||||||||| ||||| ||||||||||| ||||||||
Sbjct: 221 gattgcattcacattgatattcctgcttgcatattccctagcaactgttttagtgaaacc 162
Query: 459 aatcactccagccttggctgcgctataattagcttggccaacattgccagtaagaccaac 518
||| |||||||||||||| || || ||||||||||||||| |||||||||||||||||||
Sbjct: 161 aatgactccagccttggcagcactgtaattagcttggccagcattgccagtaagaccaac 102
Query: 519 tacagatgcaatgttgataatttttccctttctctttttcatcattac-ttttgttgcag 577
|| ||||| |||||||| | | |||||||| |||| ||||||||||| |||||| ||||
Sbjct: 101 aactgatgctatgttgatgactcttccctttttcttcttcatcattactttttgtggcag 42
Query: 578 cctgtgtacaaaggaagacaccagtaagattcagatcaatt 618
|||||||||| ||||| |||||||||||||| |||||||||
Sbjct: 41 cctgtgtacagaggaaaacaccagtaagatttagatcaatt 1
>gb|CD917105.1|CD917105 G608.104A13F010905 G608 Triticum aestivum cDNA clone G608104A13,
mRNA sequence
Length = 487
Score = 309 bits (156), Expect = 3e-082
Identities = 276/316 (87%)
Strand = Plus / Minus
Query: 203 acattaccatccctccgtcaattgtaagcacctgtccagtcatatagctagctgcggggt 262
||||||||||||| || || || ||||||||||||||||| || ||||| || ||||| |
Sbjct: 330 acattaccatcccaccatcgatggtaagcacctgtccagtgatgtagctggccgcgggat 271
Query: 263 taagggccaggaactcgaccaaccctgcaacttcctctggttggccatatctccctaacg 322
| ||||||| |||||| |||||||| |||||||||||||| |||||||| ||||| || |
Sbjct: 270 tcagggccaagaactcaaccaacccagcaacttcctctggctggccatacctccccaagg 211
Query: 323 gaatggttgacaagattttcttctcaagctcttctccaagttcggcagtcatatcagatg 382
|||| || ||||||||| ||||||||| ||| ||||||||||| || ||||| || ||||
Sbjct: 210 gaatagtcgacaagattctcttctcaacctcctctccaagttccgcggtcatgtctgatg 151
Query: 383 caatgaaccctggtgcaatagcattcacattgatatttctgcttgcatactccctggcaa 442
| ||||| || ||||| || ||||||||||||||||| ||||||||||| ||||| ||||
Sbjct: 150 ctatgaatccaggtgcgattgcattcacattgatattcctgcttgcatattccctagcaa 91
Query: 443 ctgtttttgtgaaaccaatcactccagccttggctgcgctataattagcttggccaacat 502
||||||| ||||||||||| |||||||||||||| || || ||||||||||||||| |||
Sbjct: 90 ctgttttagtgaaaccaatgactccagccttggcagcactgtaattagcttggccagcat 31
Query: 503 tgccagtaagaccaac 518
||||||||||||||||
Sbjct: 30 tgccagtaagaccaac 15
>gb|CA640303.1|CA640303 wre1n.pk0033.e9 wre1n Triticum aestivum cDNA clone wre1n.pk0033.e9
5' end, mRNA sequence
Length = 480
Score = 299 bits (151), Expect = 2e-079
Identities = 265/303 (87%)
Strand = Plus / Minus
Query: 203 acattaccatccctccgtcaattgtaagcacctgtccagtcatatagctagctgcggggt 262
||||||||||||| || || || ||||||||||||||||| || ||||| || ||||| |
Sbjct: 303 acattaccatcccaccatcgatggtaagcacctgtccagtgatgtagctggccgcgggat 244
Query: 263 taagggccaggaactcgaccaaccctgcaacttcctctggttggccatatctccctaacg 322
| ||||||| |||||| |||||||| |||||||||||||| |||||||| ||||| || |
Sbjct: 243 tcagggccaagaactcaaccaacccagcaacttcctctggctggccatacctccccaagg 184
Query: 323 gaatggttgacaagattttcttctcaagctcttctccaagttcggcagtcatatcagatg 382
|||| |||||||||||| ||||||||||||| ||||||||||| || ||||| || ||||
Sbjct: 183 gaatagttgacaagattctcttctcaagctcctctccaagttccgcggtcatgtctgatg 124
Query: 383 caatgaaccctggtgcaatagcattcacattgatatttctgcttgcatactccctggcaa 442
| ||||| || ||||| || ||||||||||||||||| ||||||||||| ||||| ||||
Sbjct: 123 ctatgaatccaggtgcgattgcattcacattgatattcctgcttgcatattccctagcaa 64
Query: 443 ctgtttttgtgaaaccaatcactccagccttggctgcgctataattagcttggccaacat 502
||||||| ||||||||||| |||||||||||||| || || ||||||||||||||| |||
Sbjct: 63 ctgttttagtgaaaccaatgactccagccttggcagcactgtaattagcttggccagcat 4
Query: 503 tgc 505
|||
Sbjct: 3 tgc 1
>gb|BG606649.1|BG606649 WHE2451_C05_E09ZS Triticum monococcum early reproductive apex cDNA
library Triticum monococcum cDNA clone WHE2451_C05_E09,
mRNA sequence
Length = 528
Score = 250 bits (126), Expect = 2e-064
Identities = 231/266 (86%)
Strand = Plus / Minus
Query: 203 acattaccatccctccgtcaattgtaagcacctgtccagtcatatagctagctgcggggt 262
||||||||||||| || || || ||||||||||||||||| || ||||| || ||||| |
Sbjct: 266 acattaccatcccaccatcgatggtaagcacctgtccagtgatgtagctggccgcgggat 207
Query: 263 taagggccaggaactcgaccaaccctgcaacttcctctggttggccatatctccctaacg 322
| ||||||| |||||| |||||||| |||||||||||||| |||||||| ||||| || |
Sbjct: 206 tcagggccaagaactcaaccaacccagcaacttcctctggctggccatacctccccaaag 147
Query: 323 gaatggttgacaagattttcttctcaagctcttctccaagttcggcagtcatatcagatg 382
|||| || ||||||||| ||||||||||||| ||||||||||| || ||||| || ||||
Sbjct: 146 gaatagtcgacaagattctcttctcaagctcctctccaagttccgcggtcatgtctgatg 87
Query: 383 caatgaaccctggtgcaatagcattcacattgatatttctgcttgcatactccctggcaa 442
| ||||| || ||||| || ||||||||||||||||| ||||||||||| ||||| ||||
Sbjct: 86 ctatgaatccaggtgcgattgcattcacattgatattcctgcttgcatattccctagcaa 27
Query: 443 ctgtttttgtgaaaccaatcactcca 468
||||||| ||||||||||| ||||||
Sbjct: 26 ctgttttagtgaaaccaatgactcca 1
>gb|BQ487478.1|BQ487478 WHE2451_C05_E09ZY Triticum monococcum early reproductive apex cDNA
library Triticum monococcum cDNA clone WHE2451_C05_E09,
mRNA sequence
Length = 545
Score = 244 bits (123), Expect = 1e-062
Identities = 225/259 (86%)
Strand = Plus / Plus
Query: 203 acattaccatccctccgtcaattgtaagcacctgtccagtcatatagctagctgcggggt 262
||||||||||||| || || || ||||||||||||||||| || ||||| || ||||| |
Sbjct: 286 acattaccatcccaccatcgatggtaagcacctgtccagtgatgtagctggccgcgggat 345
Query: 263 taagggccaggaactcgaccaaccctgcaacttcctctggttggccatatctccctaacg 322
| ||||||| |||||| |||||||| |||||||||||||| |||||||| ||||| || |
Sbjct: 346 tcagggccaagaactcaaccaacccagcaacttcctctggctggccatacctccccaaag 405
Query: 323 gaatggttgacaagattttcttctcaagctcttctccaagttcggcagtcatatcagatg 382
|||| || ||||||||| ||||||||||||| ||||||||||| || ||||| || ||||
Sbjct: 406 gaatagtcgacaagattctcttctcaagctcctctccaagttccgcggtcatgtctgatg 465
Query: 383 caatgaaccctggtgcaatagcattcacattgatatttctgcttgcatactccctggcaa 442
| ||||| || ||||| || ||||||||||||||||| ||||||||||| ||||| ||||
Sbjct: 466 ctatgaatccaggtgcgattgcattcacattgatattcctgcttgcatattccctagcaa 525
Query: 443 ctgtttttgtgaaaccaat 461
||||||| |||||||||||
Sbjct: 526 ctgttttagtgaaaccaat 544
>gb|CA606078.1|CA606078 wr1.pk0058.f8 wr1 Triticum aestivum cDNA clone wr1.pk0058.f8 5'
end, mRNA sequence
Length = 583
Score = 224 bits (113), Expect = 1e-056
Identities = 233/268 (86%), Gaps = 4/268 (1%)
Strand = Plus / Minus
Query: 612 atcaattacgtcttgcc-actgagatttcttcatcctcatcaacaatgtgtctcgtgtaa 670
||||||||| ||||||| | |||||||||||||||||||| ||||| || || | ||||
Sbjct: 289 atcaattacatcttgcccattgagatttcttcatcctcatnaacaacgtatccctcgtaa 230
Query: 671 tccctgcattatttaccagc-acatctattgttcccc-atttatctagagctgctttcat 728
||||||||||||||||||| | || |||||||||| ||||||| | ||||||||||||
Sbjct: 229 tccctgcattatttaccagggatgtcaattgttcccccatttatcaatagctgctttcat 170
Query: 729 catagactctacatcagcttcttttgaaacatctcctccgaaggtgatag-cctcaccac 787
|||||| || |||||||||||||| |||||||||||||| ||||| |||| ||| |||||
Sbjct: 169 catagattccacatcagcttctttagaaacatctcctccaaaggtaatagccctgaccac 110
Query: 788 cagatgcttcaatctctttggagacctcttcagcctctttcgaggaccgggcatagttta 847
|||||||||||||||||| |||||| ||||||||||||||||||| || ||||| || |
Sbjct: 109 cagatgcttcaatctcttcggagactgcttcagcctctttcgaggatcgtgcataattca 50
Query: 848 ccagaaccttgcatcctgcttttccaag 875
| || |||||||| || |||||||||||
Sbjct: 49 ctaggaccttgcagccagcttttccaag 22
>gb|CV758564.1|CV758564 FGAS053009 Triticum aestivum FGAS: Library 2 Gate 3 Triticum
aestivum cDNA, mRNA sequence
Length = 810
Score = 206 bits (104), Expect = 3e-051
Identities = 257/303 (84%), Gaps = 5/303 (1%)
Strand = Plus / Minus
Query: 701 ttccccatttatcta--gagctgctttcatcatag-actctacatcagcttcttttgaaa 757
||||||||||||| | ||||||||||||| |||| | ||||| ||||||||||| ||||
Sbjct: 760 ttccccatttatccaaggagctgctttcattataggattctacttcagcttctttagaaa 701
Query: 758 catctcctccgaa-ggtgatagcctcaccaccagatgcttcaatctctttgg-agacctc 815
|||||||||| || ||| ||||||| ||| ||||||||||||||||||| || |||| |
Sbjct: 700 catctcctccaaaaggtaatagcctgacccccagatgcttcaatctcttcgggagactgc 641
Query: 816 ttcagcctctttcgaggaccgggcatagtttaccagaaccttgcatcctgcttttccaag 875
|||||||||||||||||| || ||||| || || || |||||||| || |||||||||||
Sbjct: 640 ttcagcctctttcgaggatcgtgcataattcactaggaccttgcaaccagcttttccaag 581
Query: 876 ggctagagcagttgccttaccaatccctctagatgcacctgtaacaacaacaactggagc 935
|| | ||| || || ||||||||||| || ||||| ||||||||||||||||||||
Sbjct: 580 agccaatgcaacggcttttccaatccctctggaagcacccgtaacaacaacaactggagc 521
Query: 936 ttccagcttggtagcatcttttacaattgcttgttcaacagcggcaacatgggtttgcac 995
|||||||| |||||||||| |||| ||||||||||||||| ||||| ||||| ||||
Sbjct: 520 ttccagctctgtagcatcttgcacaactgcttgttcaacagcagcaacgtgggtgcgcac 461
Query: 996 acc 998
|||
Sbjct: 460 acc 458
>gb|CA608116.1|CA608116 wr1.pk0085.c7 wr1 Triticum aestivum cDNA clone wr1.pk0085.c7 5'
end, mRNA sequence
Length = 244
Score = 174 bits (88), Expect = 1e-041
Identities = 203/243 (83%)
Strand = Plus / Minus
Query: 307 ccatatctccctaacggaatggttgacaagattttcttctcaagctcttctccaagttcg 366
||||| ||||| || ||||| || ||||||||| |||| |||| ||| || |||||| |
Sbjct: 244 ccatacctccccaagggaatagtcgacaagattctcttntcaacctcctcnccaagtncc 185
Query: 367 gcagtcatatcagatgcaatgaaccctggtgcaatagcattcacattgatatttctgctt 426
|| ||||| | ||||| ||||| || ||||| || ||||||||||||||||| ||| ||
Sbjct: 184 gcggtcatgactgatgctatgaatccaggtgcgattgcattcacattgatattcctgntt 125
Query: 427 gcatactccctggcaactgtttttgtgaaaccaatcactccagccttggctgcgctataa 486
||||| ||| | ||||||||||| ||||||||||| |||||||| ||||| || || |||
Sbjct: 124 gcatattccgtagcaactgttttagtgaaaccaatgactccagcnttggcagcactgtaa 65
Query: 487 ttagcttggccaacattgccagtaagaccaactacagatgcaatgttgataatttttccc 546
|||||||||||| ||||||||||||| ||||| || ||||| |||||||| | | |||||
Sbjct: 64 ttagcttggccagcattgccagtaaggccaacaactgatgctatgttgatgactcttccc 5
Query: 547 ttt 549
|||
Sbjct: 4 ttt 2
>gb|CV758664.1|CV758664 FGAS052940 Triticum aestivum FGAS: Library 2 Gate 3 Triticum
aestivum cDNA, mRNA sequence
Length = 825
Score = 172 bits (87), Expect = 4e-041
Identities = 183/215 (85%)
Strand = Plus / Minus
Query: 784 ccaccagatgcttcaatctctttggagacctcttcagcctctttcgaggaccgggcatag 843
|||||||||||||||||||||| |||||| ||||||||||||||||||| || |||||
Sbjct: 671 ccaccagatgcttcaatctcttcggagactgcttcagcctctttcgaggatcgtgcataa 612
Query: 844 tttaccagaaccttgcatcctgcttttccaagggctagagcagttgccttaccaatccct 903
|| || || |||||||| || ||||||||||| || | ||| || || |||||||||
Sbjct: 611 ttcactaggaccttgcaaccagcttttccaagagccaatgcaacggcttttccaatccct 552
Query: 904 ctagatgcacctgtaacaacaacaactggagcttccagcttggtagcatcttttacaatt 963
|| || ||||| |||||||||||||||||||||||||||| |||||||||| |||| |
Sbjct: 551 ctggaagcacccgtaacaacaacaactggagcttccagctctgtagcatcttgcacaact 492
Query: 964 gcttgttcaacagcggcaacatgggtttgcacacc 998
|||||||||||||| ||||| ||||| |||||||
Sbjct: 491 gcttgttcaacagcagcaacgtgggtgcgcacacc 457
>gb|CA732117.1|CA732117 wlp1c.pk003.i17 wlp1c Triticum aestivum cDNA clone wlp1c.pk003.i17
5' end, mRNA sequence
Length = 639
Score = 149 bits (75), Expect = 5e-034
Identities = 180/216 (83%)
Strand = Plus / Minus
Query: 783 accaccagatgcttcaatctctttggagacctcttcagcctctttcgaggaccgggcata 842
||||||||||||||||||||||| |||||| |||||| |||||||||| || |||||
Sbjct: 603 accaccagatgcttcaatctcttcggagactgcttcagnnnctttcgaggatcgtgcata 544
Query: 843 gtttaccagaaccttgcatcctgcttttccaagggctagagcagttgccttaccaatccc 902
|| || || |||||||| || ||||||||||| || | ||| || || ||||||||
Sbjct: 543 attcactaggaccttgcaaccagcttttccaagagccaatgcaacggcttttccaatccc 484
Query: 903 tctagatgcacctgtaacaacaacaactggagcttccagcttggtagcatcttttacaat 962
||| || ||||| |||||||||||||||||||||||||||| |||||||||| ||||
Sbjct: 483 tctggaagcacccgtaacaacaacaactggagcttccagctctgtagcatcttgcacaac 424
Query: 963 tgcttgttcaacagcggcaacatgggtttgcacacc 998
||||||||||||| | ||||| ||||| |||||||
Sbjct: 423 tgcttgttcaacaacagcaacgtgggtgcgcacacc 388
>gb|DR733165.1|DR733165 FGAS078926 Triticum aestivum FGAS: Library 2 Gate 3 Triticum
aestivum cDNA, mRNA sequence
Length = 725
Score = 69.9 bits (35), Expect = 4e-010
Identities = 47/51 (92%)
Strand = Plus / Plus
Query: 466 ccagccttggctgcgctataattagcttggccaacattgccagtaagacca 516
||||||||||| || || ||||||||||||||| |||||||||||||||||
Sbjct: 121 ccagccttggcagcactgtaattagcttggccagcattgccagtaagacca 171
>gb|CD931707.1|CD931707 GR45.115F07F010420 GR45 Triticum aestivum cDNA clone GR45115F07, mRNA
sequence
Length = 669
Score = 46.1 bits (23), Expect = 0.006
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 1126 gctacggtggcggcggcggtggccatg 1152
||||||||||||| |||||||||||||
Sbjct: 121 gctacggtggcggtggcggtggccatg 147
>gb|CD893978.1|CD893978 G118.125B06F010828 G118 Triticum aestivum cDNA clone G118125B06, mRNA
sequence
Length = 473
Score = 44.1 bits (22), Expect = 0.023
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 1066 ccccggcgggaggcggcggcgg 1087
||||||||||||||||||||||
Sbjct: 249 ccccggcgggaggcggcggcgg 228
>gb|CD893979.1|CD893979 G118.125B06R011115 G118 Triticum aestivum cDNA clone G118125B06, mRNA
sequence
Length = 499
Score = 44.1 bits (22), Expect = 0.023
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1066 ccccggcgggaggcggcggcgg 1087
||||||||||||||||||||||
Sbjct: 398 ccccggcgggaggcggcggcgg 419
>gb|BE516595.1|BE516595 WHE0630_C09_E18ZA Wheat ABA-treated embryo cDNA library Triticum
aestivum cDNA clone WHE0630_C09_E18, mRNA sequence
Length = 368
Score = 42.1 bits (21), Expect = 0.091
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 1134 ggcggcggcggtggccatgag 1154
|||||||||||||||||||||
Sbjct: 182 ggcggcggcggtggccatgag 162
>gb|CA683011.1|CA683011 wlm96.pk0012.e4 wlm96 Triticum aestivum cDNA clone wlm96.pk0012.e4 5'
end, mRNA sequence
Length = 684
Score = 42.1 bits (21), Expect = 0.091
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1069 cggcgggaggcggcggcggcc 1089
|||||||||||||||||||||
Sbjct: 246 cggcgggaggcggcggcggcc 266
>gb|CN010969.1|CN010969 WHE3878_D02_H04ZS Wheat Fusarium graminearum infected spike cDNA
library Triticum aestivum cDNA clone WHE3878_D02_H04,
mRNA sequence
Length = 652
Score = 42.1 bits (21), Expect = 0.091
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 1126 gctacggtggcggcggcggtggcca 1150
||||||||||||| |||||||||||
Sbjct: 183 gctacggtggcggtggcggtggcca 207
>gb|BQ903979.1|BQ903979 Ta03_22b02_R Ta03_AAFC_ECORC_Fusarium_graminearum_inoculated_wheat_he
ads Triticum aestivum cDNA clone Ta03_22b02, mRNA
sequence
Length = 661
Score = 40.1 bits (20), Expect = 0.36
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1069 cggcgggaggcggcggcggc 1088
||||||||||||||||||||
Sbjct: 431 cggcgggaggcggcggcggc 412
>gb|BJ213415.1|BJ213415 BJ213415 Y. Ogihara unpublished cDNA library, Wh Triticum aestivum
cDNA clone wh22f02 5', mRNA sequence
Length = 681
Score = 40.1 bits (20), Expect = 0.36
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 1118 ctgctgctgctacggtggcggcggcggt 1145
||||||||||| ||| ||||||||||||
Sbjct: 92 ctgctgctgctgcggcggcggcggcggt 65
>gb|BJ302062.1|BJ302062 BJ302062 Y. Ogihara unpublished cDNA library, Wh_yd Triticum aestivum
cDNA clone whyd13h14 5', mRNA sequence
Length = 718
Score = 40.1 bits (20), Expect = 0.36
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 1118 ctgctgctgctacggtggcggcggcggt 1145
||||||||||| ||| ||||||||||||
Sbjct: 66 ctgctgctgctgcggcggcggcggcggt 39
>gb|BJ314425.1|BJ314425 BJ314425 Y. Ogihara unpublished cDNA library, Wh_yf Triticum aestivum
cDNA clone whyf17k09 5', mRNA sequence
Length = 674
Score = 40.1 bits (20), Expect = 0.36
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 1118 ctgctgctgctacggtggcggcggcggt 1145
||||||||||| ||| ||||||||||||
Sbjct: 44 ctgctgctgctgcggcggcggcggcggt 17
>gb|CA597691.1|CA597691 wpa1c.pk015.p10 wpa1c Triticum aestivum cDNA clone wpa1c.pk015.p10 5'
end, mRNA sequence
Length = 636
Score = 40.1 bits (20), Expect = 0.36
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 1069 cggcgggaggcggcggcggccccggcgc 1096
|||||||||||| |||||||||| ||||
Sbjct: 306 cggcgggaggcgtcggcggcccccgcgc 279
>gb|CA600075.1|CA600075 waw1c.pk006.e24 waw1c Triticum aestivum cDNA clone waw1c.pk006.e24 5'
end, mRNA sequence
Length = 650
Score = 40.1 bits (20), Expect = 0.36
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 1069 cggcgggaggcggcggcggccccggcgc 1096
|||||||||||| |||||||||| ||||
Sbjct: 462 cggcgggaggcgtcggcggcccccgcgc 435
>gb|CA698884.1|CA698884 wlk8.pk0009.g1 wlk8 Triticum aestivum cDNA clone wlk8.pk0009.g1 5'
end, mRNA sequence
Length = 402
Score = 40.1 bits (20), Expect = 0.36
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1068 ccggcgggaggcggcggcgg 1087
||||||||||||||||||||
Sbjct: 228 ccggcgggaggcggcggcgg 209
>gb|CA727334.1|CA727334 wde1f.pk003.f19 wde1f Triticum aestivum cDNA clone wde1f.pk003.f19 5'
end, mRNA sequence
Length = 624
Score = 40.1 bits (20), Expect = 0.36
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1076 aggcggcggcggccccggcg 1095
||||||||||||||||||||
Sbjct: 161 aggcggcggcggccccggcg 180
>gb|CA729234.1|CA729234 wdi1c.pk006.c24 wdi1c Triticum aestivum cDNA clone wdi1c.pk006.c24 5'
end, mRNA sequence
Length = 605
Score = 40.1 bits (20), Expect = 0.36
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 1069 cggcgggaggcggcggcggccccggcgc 1096
|||||||||||| |||||||||| ||||
Sbjct: 452 cggcgggaggcgtcggcggcccccgcgc 425
>gb|CA730946.1|CA730946 wip1c.pk007.o3 wip1c Triticum aestivum cDNA clone wip1c.pk007.o3 5'
end, mRNA sequence
Length = 607
Score = 40.1 bits (20), Expect = 0.36
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1076 aggcggcggcggccccggcg 1095
||||||||||||||||||||
Sbjct: 160 aggcggcggcggccccggcg 179
>gb|CD934344.1|CD934344 GR45.123O19F010723 GR45 Triticum aestivum cDNA clone GR45123O19, mRNA
sequence
Length = 632
Score = 40.1 bits (20), Expect = 0.36
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1069 cggcgggaggcggcggcggc 1088
||||||||||||||||||||
Sbjct: 510 cggcgggaggcggcggcggc 491
>gb|CD934926.1|CD934926 OV.002F18F010109 OV Triticum aestivum cDNA clone OV002F18, mRNA
sequence
Length = 707
Score = 40.1 bits (20), Expect = 0.36
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 1069 cggcgggaggcggcggcggccccggcgc 1096
|||||||||||| |||||||||| ||||
Sbjct: 436 cggcgggaggcgtcggcggcccccgcgc 409
>gb|CD937199.1|CD937199 OV.106E18F010205 OV Triticum aestivum cDNA clone OV106E18, mRNA
sequence
Length = 649
Score = 40.1 bits (20), Expect = 0.36
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 1069 cggcgggaggcggcggcggccccggcgc 1096
|||||||||||| |||||||||| ||||
Sbjct: 443 cggcgggaggcgtcggcggcccccgcgc 416
>gb|CF133081.1|CF133081 WHE4353_G11_N21ZT Wheat meiotic floret cDNA library Triticum aestivum
cDNA clone WHE4353_G11_N21, mRNA sequence
Length = 766
Score = 40.1 bits (20), Expect = 0.36
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 1069 cggcgggaggcggcggcggccccggcgc 1096
|||||||||||| |||||||||| ||||
Sbjct: 261 cggcgggaggcgtcggcggcccccgcgc 234
>gb|CK209310.1|CK209310 FGAS021071 Triticum aestivum FGAS: Library 5 GATE 7 Triticum aestivum
cDNA, mRNA sequence
Length = 1097
Score = 40.1 bits (20), Expect = 0.36
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1069 cggcgggaggcggcggcggc 1088
||||||||||||||||||||
Sbjct: 564 cggcgggaggcggcggcggc 545
>gb|CN012105.1|CN012105 WHE3892_F02_K04ZS Wheat Fusarium graminearum infected spike cDNA
library Triticum aestivum cDNA clone WHE3892_F02_K04,
mRNA sequence
Length = 454
Score = 40.1 bits (20), Expect = 0.36
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 771 ggtgatagcctcaccaccag 790
||||||||||||||||||||
Sbjct: 402 ggtgatagcctcaccaccag 383
>gb|CV769598.1|CV769598 FGAS063989 Triticum aestivum FGAS: Library 2 Gate 3 Triticum aestivum
cDNA, mRNA sequence
Length = 854
Score = 40.1 bits (20), Expect = 0.36
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 1069 cggcgggaggcggcggcggccccggcgc 1096
|||||||||||| |||||||||| ||||
Sbjct: 548 cggcgggaggcgtcggcggcccccgcgc 521
>gb|CV771187.1|CV771187 FGAS065580 Triticum aestivum FGAS: Library 2 Gate 3 Triticum aestivum
cDNA, mRNA sequence
Length = 865
Score = 40.1 bits (20), Expect = 0.36
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 1069 cggcgggaggcggcggcggccccggcgc 1096
|||||||||||| |||||||||| ||||
Sbjct: 556 cggcgggaggcgtcggcggcccccgcgc 529
>gb|CV774274.1|CV774274 FGAS068672 Triticum aestivum FGAS: Library 2 Gate 3 Triticum aestivum
cDNA, mRNA sequence
Length = 841
Score = 40.1 bits (20), Expect = 0.36
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1069 cggcgggaggcggcggcggc 1088
||||||||||||||||||||
Sbjct: 536 cggcgggaggcggcggcggc 517
>gb|CV779502.1|CV779502 FGAS073911 Triticum aestivum FGAS: Library 2 Gate 3 Triticum aestivum
cDNA, mRNA sequence
Length = 848
Score = 40.1 bits (20), Expect = 0.36
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 1069 cggcgggaggcggcggcggccccggcgc 1096
|||||||||||| |||||||||| ||||
Sbjct: 528 cggcgggaggcgtcggcggcccccgcgc 501
>gb|DR736463.1|DR736463 FGAS081833 Triticum aestivum FGAS: Library 5 GATE 7 Triticum aestivum
cDNA, mRNA sequence
Length = 1115
Score = 40.1 bits (20), Expect = 0.36
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1069 cggcgggaggcggcggcggc 1088
||||||||||||||||||||
Sbjct: 267 cggcgggaggcggcggcggc 248
Database: Triticum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 3:01 PM
Number of letters in database: 367,240,239
Number of sequences in database: 636,343
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 500,693
Number of Sequences: 636343
Number of extensions: 500693
Number of successful extensions: 186605
Number of sequences better than 0.5: 43
Number of HSP's better than 0.5 without gapping: 43
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 186495
Number of HSP's gapped (non-prelim): 94
length of query: 1252
length of database: 367,240,239
effective HSP length: 20
effective length of query: 1232
effective length of database: 354,513,379
effective search space: 436760482928
effective search space used: 436760482928
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)