BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 3866402.2.1
         (406 letters)

Database: Triticum_nucl_with_EST.fasta 
           636,343 sequences; 367,240,239 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|BJ246870.1|BJ246870  BJ246870 Y. Ogihara unpublished cDNA...    58   5e-007
gb|BJ252831.1|BJ252831  BJ252831 Y. Ogihara unpublished cDNA...    58   5e-007

>gb|BJ246870.1|BJ246870 BJ246870 Y. Ogihara unpublished cDNA library, Wh_f Triticum
           aestivum cDNA clone whf26b19 5', mRNA sequence
          Length = 190

 Score = 58.0 bits (29), Expect = 5e-007
 Identities = 41/45 (91%)
 Strand = Plus / Minus

                                                        
Query: 160 tgcttcttgccgccagccaagatccgagagatttgaaggcctcgg 204
           |||||||| ||||||||||| || ||||||||||| |||||||||
Sbjct: 66  tgcttctttccgccagccaaaatgcgagagatttggaggcctcgg 22



>gb|BJ252831.1|BJ252831 BJ252831 Y. Ogihara unpublished cDNA library, Wh_f Triticum
           aestivum cDNA clone whf26b19 3', mRNA sequence
          Length = 405

 Score = 58.0 bits (29), Expect = 5e-007
 Identities = 41/45 (91%)
 Strand = Plus / Plus

                                                        
Query: 160 tgcttcttgccgccagccaagatccgagagatttgaaggcctcgg 204
           |||||||| ||||||||||| || ||||||||||| |||||||||
Sbjct: 342 tgcttctttccgccagccaaaatgcgagagatttggaggcctcgg 386



  Database: Triticum_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  3:01 PM
  Number of letters in database: 367,240,239
  Number of sequences in database:  636,343
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 69,722
Number of Sequences: 636343
Number of extensions: 69722
Number of successful extensions: 17579
Number of sequences better than  0.5: 2
Number of HSP's better than  0.5 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 17575
Number of HSP's gapped (non-prelim): 4
length of query: 406
length of database: 367,240,239
effective HSP length: 19
effective length of query: 387
effective length of database: 355,149,722
effective search space: 137442942414
effective search space used: 137442942414
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)