BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3748535.2.1
(619 letters)
Database: Triticum_nucl_with_EST.fasta
636,343 sequences; 367,240,239 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BJ271067.1|BJ271067 BJ271067 Y. Ogihara unpublished cDNA... 66 3e-009
gb|CN009326.1|CN009326 WHE3857_D12_H23ZS Wheat Fusarium gra... 66 3e-009
gb|CV765668.1|CV765668 FGAS060055 Triticum aestivum FGAS: L... 66 3e-009
gb|U60754.1|TAU60754 Triticum aestivum delta-24-sterol meth... 66 3e-009
gb|BE585605.1|BE585605 EST#5T7_B05_b5_041 KSU wheat Fusariu... 62 5e-008
gb|BJ225577.1|BJ225577 BJ225577 Y. Ogihara unpublished cDNA... 60 2e-007
gb|BG313627.1|BG313627 WHE2056_E07_I14ZS Wheat salt-stresse... 42 0.045
>gb|BJ271067.1|BJ271067 BJ271067 Y. Ogihara unpublished cDNA library, Wh_oh Triticum
aestivum cDNA clone whoh23p14 5', mRNA sequence
Length = 650
Score = 65.9 bits (33), Expect = 3e-009
Identities = 84/101 (83%)
Strand = Plus / Plus
Query: 332 atgaaggttttggatgtgggatgtggaattgggggacctttaatagaaatcgccagattc 391
||||||||||||||||| || |||||||| || || || |||| |||||| || |||||
Sbjct: 175 atgaaggttttggatgtcggctgtggaataggcgggccattaagagaaattgcgagattt 234
Query: 392 agctcaacatcgataactggactgaacaacaatgactacca 432
||||| || || | |||||| |||||||||| ||||||||
Sbjct: 235 agctccacctcagttactggattgaacaacaacgactacca 275
Score = 42.1 bits (21), Expect = 0.045
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 500 gacttcatggacatgccaatatctgataacacctttgatgc 540
||||||||| | |||||| | ||||||||||| ||||||||
Sbjct: 343 gacttcatgaagatgccattctctgataacacttttgatgc 383
>gb|CN009326.1|CN009326 WHE3857_D12_H23ZS Wheat Fusarium graminearum infected spike cDNA
library Triticum aestivum cDNA clone WHE3857_D12_H23,
mRNA sequence
Length = 723
Score = 65.9 bits (33), Expect = 3e-009
Identities = 84/101 (83%)
Strand = Plus / Plus
Query: 332 atgaaggttttggatgtgggatgtggaattgggggacctttaatagaaatcgccagattc 391
||||||||||||||||| || |||||||| || || || |||| |||||| || |||||
Sbjct: 463 atgaaggttttggatgtcggctgtggaataggcgggccattaagagaaattgcgagattt 522
Query: 392 agctcaacatcgataactggactgaacaacaatgactacca 432
||||| || || | |||||| |||||||||| ||||||||
Sbjct: 523 agctccacctcagttactggattgaacaacaacgactacca 563
>gb|CV765668.1|CV765668 FGAS060055 Triticum aestivum FGAS: Library 2 Gate 3 Triticum
aestivum cDNA, mRNA sequence
Length = 816
Score = 65.9 bits (33), Expect = 3e-009
Identities = 84/101 (83%)
Strand = Plus / Plus
Query: 332 atgaaggttttggatgtgggatgtggaattgggggacctttaatagaaatcgccagattc 391
||||||||||||||||| || |||||||| || || || |||| |||||| || |||||
Sbjct: 299 atgaaggttttggatgtcggctgtggaataggcgggccattaagagaaattgcgagattt 358
Query: 392 agctcaacatcgataactggactgaacaacaatgactacca 432
||||| || || | |||||| |||||||||| ||||||||
Sbjct: 359 agctccacctcagttactggattgaacaacaacgactacca 399
>gb|U60754.1|TAU60754 Triticum aestivum delta-24-sterol methyltransferase (TA-MT) mRNA,
complete cds
Length = 1392
Score = 65.9 bits (33), Expect = 3e-009
Identities = 84/101 (83%)
Strand = Plus / Plus
Query: 332 atgaaggttttggatgtgggatgtggaattgggggacctttaatagaaatcgccagattc 391
||||||||||||||||| || |||||||| || || || |||| |||||| || |||||
Sbjct: 386 atgaaggttttggatgtcggctgtggaataggcgggccattaagagaaattgcgagattt 445
Query: 392 agctcaacatcgataactggactgaacaacaatgactacca 432
||||| || || | |||||| |||||||||| ||||||||
Sbjct: 446 agctccacctcagttactggattgaacaacaacgactacca 486
>gb|BE585605.1|BE585605 EST#5T7_B05_b5_041 KSU wheat Fusarium graminearum infected spike
cDNA library Triticum aestivum cDNA clone
EST#5T7_B05_b5_041, mRNA sequence
Length = 712
Score = 61.9 bits (31), Expect = 5e-008
Identities = 82/99 (82%)
Strand = Plus / Plus
Query: 334 gaaggttttggatgtgggatgtggaattgggggacctttaatagaaatcgccagattcag 393
||||||||||||||| || |||||||| || || || |||| |||||| || ||||| ||
Sbjct: 6 gaaggttttggatgtcggctgtggaataggcgggccattaagagaaattgcgagatttag 65
Query: 394 ctcaacatcgataactggactgaacaacaatgactacca 432
||| || || | |||||| |||||||||| ||||||||
Sbjct: 66 ctccacctcagttactggattgaacaacaacgactacca 104
>gb|BJ225577.1|BJ225577 BJ225577 Y. Ogihara unpublished cDNA library, Wh_dL Triticum
aestivum cDNA clone whdl22m20 5', mRNA sequence
Length = 488
Score = 60.0 bits (30), Expect = 2e-007
Identities = 83/101 (82%)
Strand = Plus / Plus
Query: 332 atgaaggttttggatgtgggatgtggaattgggggacctttaatagaaatcgccagattc 391
||||||||||||||||| || |||||||| || || || |||| |||||| || |||||
Sbjct: 78 atgaaggttttggatgtcggctgtggaataggcgggccattaagagaaattgcgagattt 137
Query: 392 agctcaacatcgataactggactgaacaacaatgactacca 432
||||| || || | |||||| |||||||||| |||||||
Sbjct: 138 agctccacctcagttactggattgaacaacaacnactacca 178
>gb|BG313627.1|BG313627 WHE2056_E07_I14ZS Wheat salt-stressed sheath cDNA library Triticum
aestivum cDNA clone WHE2056_E07_I14, mRNA sequence
Length = 403
Score = 42.1 bits (21), Expect = 0.045
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 500 gacttcatggacatgccaatatctgataacacctttgatgc 540
||||||||| | |||||| | ||||||||||| ||||||||
Sbjct: 42 gacttcatgaagatgccattctctgataacacttttgatgc 82
Database: Triticum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 3:01 PM
Number of letters in database: 367,240,239
Number of sequences in database: 636,343
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 122,807
Number of Sequences: 636343
Number of extensions: 122807
Number of successful extensions: 31056
Number of sequences better than 0.5: 7
Number of HSP's better than 0.5 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 31042
Number of HSP's gapped (non-prelim): 14
length of query: 619
length of database: 367,240,239
effective HSP length: 19
effective length of query: 600
effective length of database: 355,149,722
effective search space: 213089833200
effective search space used: 213089833200
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)