BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3742446.2.1
(598 letters)
Database: Triticum_nucl_with_EST.fasta
636,343 sequences; 367,240,239 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BE403737.1|BE403737 WHE0436_B04_D08ZS Wheat etiolated se... 278 4e-073
gb|CD911937.1|CD911937 G550.112L03F010522 G550 Triticum aes... 276 2e-072
gb|BJ290553.1|BJ290553 BJ290553 Y. Ogihara unpublished cDNA... 200 8e-050
gb|BJ255746.1|BJ255746 BJ255746 Y. Ogihara unpublished cDNA... 194 5e-048
gb|BJ290741.1|BJ290741 BJ290741 Y. Ogihara unpublished cDNA... 131 6e-029
gb|BQ839069.1|BQ839069 WHE3589_A05_B09ZS Wheat developing g... 123 1e-026
gb|CD920411.1|CD920411 G608.117A02F010912 G608 Triticum aes... 115 4e-024
gb|BJ297348.1|BJ297348 BJ297348 Y. Ogihara unpublished cDNA... 70 2e-010
gb|CD901201.1|CD901201 G356.103B15F010918 G356 Triticum aes... 68 8e-010
gb|CD901202.1|CD901202 G356.103B15R011023 G356 Triticum aes... 68 8e-010
gb|CD904301.1|CD904301 G356.113B20F010920 G356 Triticum aes... 68 8e-010
gb|CD910014.1|CD910014 G468.114C14F010821 G468 Triticum aes... 68 8e-010
gb|CD916238.1|CD916238 G550.129N10R010921 G550 Triticum aes... 68 8e-010
gb|CD919997.1|CD919997 G608.115H03F010912 G608 Triticum aes... 68 8e-010
gb|BE404991.1|BE404991 WHE1208_F10_L20ZS Wheat etiolated se... 58 7e-007
gb|BE405598.1|BE405598 WHE1209_B10_C19ZS Wheat etiolated se... 58 7e-007
gb|BF293059.1|BF293059 WHE2160_B02_C04ZS Triticum turgidum ... 58 7e-007
gb|BJ225220.1|BJ225220 BJ225220 Y. Ogihara unpublished cDNA... 58 7e-007
gb|BJ226024.1|BJ226024 BJ226024 Y. Ogihara unpublished cDNA... 58 7e-007
gb|BQ483738.1|BQ483738 WHE3512_A07_B14ZS Wheat unstressed r... 58 7e-007
gb|BQ838201.1|BQ838201 WHE2907_F12_L23ZS Wheat aluminum-str... 58 7e-007
gb|BU101211.1|BU101211 WHE3366_B10_D20ZS Chinese Spring alu... 58 7e-007
gb|CA601536.1|CA601536 wr1.pk0004.e12 wr1 Triticum aestivum... 58 7e-007
gb|CA607489.1|CA607489 wr1.pk0078.f10 wr1 Triticum aestivum... 58 7e-007
gb|CA612779.1|CA612779 wr1.pk0143.e6 wr1 Triticum aestivum ... 58 7e-007
gb|CA632146.1|CA632146 wle1n.pk0049.g9 wle1n Triticum aesti... 58 7e-007
gb|CB307317.1|CB307317 HFIG302 Hessian fly infested cDNA li... 58 7e-007
gb|CB307758.1|CB307758 HFIG743 Hessian fly infested cDNA li... 58 7e-007
gb|CK157758.1|CK157758 FGAS038920 Triticum aestivum FGAS: T... 58 7e-007
gb|CK162235.1|CK162235 FGAS014823 Triticum aestivum FGAS: L... 58 7e-007
gb|BJ297136.1|BJ297136 BJ297136 Y. Ogihara unpublished cDNA... 56 3e-006
gb|CK157171.1|CK157171 FGAS038260 Triticum aestivum FGAS: T... 54 1e-005
gb|CF133449.1|CF133449 WHE4358_B04_D08ZT Wheat meiotic flor... 50 2e-004
gb|BF483955.1|BF483955 WHE2306_E09_I18ZS Wheat pre-anthesis... 48 7e-004
gb|BG605161.1|BG605161 WHE2328_C01_F02ZS Wheat pre-anthesis... 48 7e-004
gb|CD918514.1|CD918514 G608.109L21F010907 G608 Triticum aes... 46 0.003
gb|CK155965.1|CK155965 FGAS036855 Triticum aestivum FGAS: T... 44 0.011
gb|CA485236.1|CA485236 WHE4316_B10_D20ZS Wheat meiotic anth... 42 0.043
gb|CA487050.1|CA487050 WHE4340_A07_B14ZS Wheat meiotic anth... 42 0.043
gb|BE516840.1|BE516840 WHE620_B05_D10ZA Wheat ABA-treated e... 40 0.17
gb|BJ235347.1|BJ235347 BJ235347 Y. Ogihara unpublished cDNA... 40 0.17
>gb|BE403737.1|BE403737 WHE0436_B04_D08ZS Wheat etiolated seedling root cDNA library
Triticum aestivum cDNA clone WHE0436_B04_D08, mRNA
sequence
Length = 669
Score = 278 bits (140), Expect = 4e-073
Identities = 340/404 (84%), Gaps = 2/404 (0%)
Strand = Plus / Plus
Query: 13 caaatctctaccattatgacctcccattggcactccatgaacag-acctgggctggctta 71
|||| ||||| || |||||||||||| ||||||||||| | ||| |||| |||||||| |
Sbjct: 264 caaacctctatcactatgacctcccactggcactccatcagcagtaccttggctggctaa 323
Query: 72 gcccaaagattgtggaggcgtttgcagactacgccgagttctgcttccacgcgttcggag 131
||||||| || |||| |||||||||||||| ||||| ||||| ||| | | ||||||||
Sbjct: 324 gcccaaacatagtgggcgcgtttgcagactatgccgatttctgtttcaaggtgttcggag 383
Query: 132 acagggtgaagaactggtttaccttcaacgagccgaggtgcgtcgctgctctgggctacg 191
||||||||||||| |||||||||||||| ||||||||||||||||||||| |||| || |
Sbjct: 384 acagggtgaagaattggtttaccttcaatgagccgaggtgcgtcgctgctttggggtatg 443
Query: 192 acaatggcttgcacgcaccgggaaggtgttccgggtgccccgccggaggcaactccacca 251
||| |||| | || ||||| || |||||||| |||| | || ||||| ||||||| |
Sbjct: 444 acattggcctccatgcaccagggaggtgttctcagtgctctgcaggaggtgactccacga 503
Query: 252 cggaaccgtaccttgtcgcacaccatctcatcctttctcatgcagctgcggccaggcgat 311
| || |||||||||| ||| ||||||||||| ||||| ||||| || || | ||||||
Sbjct: 504 cagagccgtaccttgccgcgcaccatctcatactttcacatgctgcggcagtgcggcgat 563
Query: 312 accgcgacaagtatcagcttcaccagaaggggaaga-ttggaattctcctggatttcgtg 370
|||| ||||||||||||| |||||| ||||||| || ||||||||||| ||||||| |||
Sbjct: 564 accgtgacaagtatcagcatcaccaaaaggggaggatttggaattctcttggattttgtg 623
Query: 371 tggtacgaacctttcagcgacagcaatgcggaccaggctgcagc 414
|||||||||||||| ||| |||| ||||| || || ||||||||
Sbjct: 624 tggtacgaacctttgagcaacagtaatgctgatcaagctgcagc 667
>gb|CD911937.1|CD911937 G550.112L03F010522 G550 Triticum aestivum cDNA clone G550112L03,
mRNA sequence
Length = 599
Score = 276 bits (139), Expect = 2e-072
Identities = 313/371 (84%)
Strand = Plus / Plus
Query: 90 cgtttgcagactacgccgagttctgcttccacgcgttcggagacagggtgaagaactggt 149
||||||| ||||| ||||||||||||||| | | ||||||||||||||||||||||||||
Sbjct: 1 cgtttgcggactatgccgagttctgcttcaaggtgttcggagacagggtgaagaactggt 60
Query: 150 ttaccttcaacgagccgaggtgcgtcgctgctctgggctacgacaatggcttgcacgcac 209
|||||||||||||||||||| | |||| ||||||||||| ||||||||||| || || |
Sbjct: 61 ttaccttcaacgagccgagggtcatcgccgctctgggctatgacaatggcttacatgcgc 120
Query: 210 cgggaaggtgttccgggtgccccgccggaggcaactccaccacggaaccgtaccttgtcg 269
|||| ||||||||| |||||| || |||||| | |||| || || |||||| |||||
Sbjct: 121 cggggaggtgttccaagtgccctgcaggaggcgattccaggactgagccgtacattgtca 180
Query: 270 cacaccatctcatcctttctcatgcagctgcggccaggcgataccgcgacaagtatcagc 329
| ||| || |||||||||| || | || |||| ||||||||| || ||||||||||
Sbjct: 181 cgcacaatatcatcctttcgcactccgcagcggtgcagcgataccgtgagaagtatcagc 240
Query: 330 ttcaccagaaggggaagattggaattctcctggatttcgtgtggtacgaacctttcagcg 389
|||||||||||||| |||||| |||||||||||||||||||||||||||||| ||||
Sbjct: 241 ctcaccagaaggggaggattgggattctcctggatttcgtgtggtacgaacctcacagca 300
Query: 390 acagcaatgcggaccaggctgcagcacagcgagccagggacttccacctaggctggttcc 449
||||||| ||||| || | ||| || ||| | || |||||||||||| | || |||||||
Sbjct: 301 acagcaacgcggatcaaggtgcggcgcagagggcaagggacttccacattggatggttcc 360
Query: 450 ttgaccccatt 460
|||||||||||
Sbjct: 361 ttgaccccatt 371
Score = 67.9 bits (34), Expect = 8e-010
Identities = 49/54 (90%)
Strand = Plus / Plus
Query: 534 ccaggatggcgaaaggctctatagactatgttggcatcaaccactacacttctt 587
||||||||| ||||||||| || ||||||||||| |||||||| ||||||||||
Sbjct: 445 ccaggatggtgaaaggctccattgactatgttggtatcaaccagtacacttctt 498
>gb|BJ290553.1|BJ290553 BJ290553 Y. Ogihara unpublished cDNA library, Wh_SL Triticum
aestivum cDNA clone whsl19e07 5', mRNA sequence
Length = 523
Score = 200 bits (101), Expect = 8e-050
Identities = 204/237 (86%), Gaps = 1/237 (0%)
Strand = Plus / Plus
Query: 13 caaatctctaccattatgacctcccattggcactccatgaacag-acctgggctggctta 71
|||| |||||||| ||||||||||| |||| ||||| | ||| |||| |||||||| |
Sbjct: 207 caaacctctaccactatgacctcccgctggcgctccaccagcagtacctaggctggctaa 266
Query: 72 gcccaaagattgtggaggcgtttgcagactacgccgagttctgcttccacgcgttcggag 131
||||||||||||||| |||||||| ||||| ||||||||||||||| | | ||| ||||
Sbjct: 267 gcccaaagattgtgggcgcgtttgcggactatgccgagttctgcttcaaggtgtttggag 326
Query: 132 acagggtgaagaactggtttaccttcaacgagccgaggtgcgtcgctgctctgggctacg 191
||||||||||||||||||||||||| |||||||||||| |||||| |||||||| || |
Sbjct: 327 acagggtgaagaactggtttacctttaacgagccgagggtcgtcgccgctctggggtatg 386
Query: 192 acaatggcttgcacgcaccgggaaggtgttccgggtgccccgccggaggcaactcca 248
||||||||||||| || ||||| ||||||||| |||||| || |||||| ||||||
Sbjct: 387 acaatggcttgcatgcgccggggaggtgttccaagtgccctgcaggaggcgactcca 443
>gb|BJ255746.1|BJ255746 BJ255746 Y. Ogihara unpublished cDNA library, Wh_h Triticum
aestivum cDNA clone whh2d11 5', mRNA sequence
Length = 377
Score = 194 bits (98), Expect = 5e-048
Identities = 203/237 (85%), Gaps = 1/237 (0%)
Strand = Plus / Plus
Query: 13 caaatctctaccattatgacctcccattggcactccatgaacag-acctgggctggctta 71
|||| |||||||| ||||||||||| |||| ||||| | ||| |||| |||||||| |
Sbjct: 98 caaacctctaccactatgacctcccgctggcgctccaccagcagtacctaggctggctaa 157
Query: 72 gcccaaagattgtggaggcgtttgcagactacgccgagttctgcttccacgcgttcggag 131
||||||||||||||| |||||||| ||||| ||||||||||||||| | | ||| ||||
Sbjct: 158 gcccaaagattgtgggcgcgtttgcggactatgccgagttctgcttcaaggtgtttggag 217
Query: 132 acagggtgaagaactggtttaccttcaacgagccgaggtgcgtcgctgctctgggctacg 191
||||||||||||||||||||||||| |||||||||||| |||||| |||||||| || |
Sbjct: 218 acagggtgaagaactggtttacctttaacgagccgagggtcgtcgccgctctggggtatg 277
Query: 192 acaatggcttgcacgcaccgggaaggtgttccgggtgccccgccggaggcaactcca 248
||||||||||||| || ||||| ||| ||||| |||||| || |||||| ||||||
Sbjct: 278 acaatggcttgcatgcgccggggaggngttccaagtgccctgcaggaggcgactcca 334
>gb|BJ290741.1|BJ290741 BJ290741 Y. Ogihara unpublished cDNA library, Wh_SL Triticum
aestivum cDNA clone whsl20b06 5', mRNA sequence
Length = 692
Score = 131 bits (66), Expect = 6e-029
Identities = 108/122 (88%)
Strand = Plus / Plus
Query: 338 aaggggaagattggaattctcctggatttcgtgtggtacgaacctttcagcgacagcaat 397
||||||| ||||||||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct: 5 aaggggaggattggaattctcttggatttcgtgtggtacgaacctcacagcgacagcaat 64
Query: 398 gcggaccaggctgcagcacagcgagccagggacttccacctaggctggttccttgacccc 457
||||| || ||||| || ||| | || |||||||||||| | || |||||||||||||||
Sbjct: 65 gcggatcaagctgcggcgcagagggcaagggacttccacattggatggttccttgacccc 124
Query: 458 at 459
||
Sbjct: 125 at 126
Score = 69.9 bits (35), Expect = 2e-010
Identities = 50/55 (90%)
Strand = Plus / Plus
Query: 533 gccaggatggcgaaaggctctatagactatgttggcatcaaccactacacttctt 587
|||||||||| ||||||||| || ||||||||||| |||||||| ||||||||||
Sbjct: 200 gccaggatggtgaaaggctccattgactatgttggtatcaaccaatacacttctt 254
>gb|BQ839069.1|BQ839069 WHE3589_A05_B09ZS Wheat developing grains cDNA library Triticum
aestivum cDNA clone WHE3589_A05_B09, mRNA sequence
Length = 732
Score = 123 bits (62), Expect = 1e-026
Identities = 113/130 (86%)
Strand = Plus / Plus
Query: 331 tcaccagaaggggaagattggaattctcctggatttcgtgtggtacgaacctttcagcga 390
|||||||||||||| |||||| |||||||||||||||||||||||||||||| |||| |
Sbjct: 4 tcaccagaaggggaggattgggattctcctggatttcgtgtggtacgaacctcacagcaa 63
Query: 391 cagcaatgcggaccaggctgcagcacagcgagccagggacttccacctaggctggttcct 450
|||||| ||||| || | ||| || ||| | || |||||||||||| | || ||||||||
Sbjct: 64 cagcaacgcggatcaaggtgcggcgcagagggcaagggacttccacattggatggttcct 123
Query: 451 tgaccccatt 460
||||||||||
Sbjct: 124 tgaccccatt 133
Score = 67.9 bits (34), Expect = 8e-010
Identities = 49/54 (90%)
Strand = Plus / Plus
Query: 534 ccaggatggcgaaaggctctatagactatgttggcatcaaccactacacttctt 587
||||||||| ||||||||| || ||||||||||| |||||||| ||||||||||
Sbjct: 207 ccaggatggtgaaaggctccattgactatgttggtatcaaccagtacacttctt 260
>gb|CD920411.1|CD920411 G608.117A02F010912 G608 Triticum aestivum cDNA clone G608117A02,
mRNA sequence
Length = 624
Score = 115 bits (58), Expect = 4e-024
Identities = 123/144 (85%), Gaps = 3/144 (2%)
Strand = Plus / Plus
Query: 320 aagtatcagcttcaccagaaggggaagattggaattctcctggatttcgtgtggtacgaa 379
|||||||||| |||||||||||||| |||||| |||||||||||||||||||||||||||
Sbjct: 25 aagtatcagcctcaccagaaggggaggattgggattctcctggatttcgtgtggtacgaa 84
Query: 380 cctttcagcgacagcaatgcggaccaggctgcagcacagcgagccagggacttccacct- 438
||| |||| ||||||| ||||| || | ||| || ||| | || |||||||||||| |
Sbjct: 85 cctcacagcaacagcaacgcggatcaaggtgcggcgcagagggcaagggacttccacatt 144
Query: 439 --aggctggttccttgaccccatt 460
| || |||||||||||||||||
Sbjct: 145 ggatgcaggttccttgaccccatt 168
Score = 67.9 bits (34), Expect = 8e-010
Identities = 49/54 (90%)
Strand = Plus / Plus
Query: 534 ccaggatggcgaaaggctctatagactatgttggcatcaaccactacacttctt 587
||||||||| ||||||||| || ||||||||||| |||||||| ||||||||||
Sbjct: 242 ccaggatggtgaaaggctccattgactatgttggtatcaaccagtacacttctt 295
>gb|BJ297348.1|BJ297348 BJ297348 Y. Ogihara unpublished cDNA library, Wh_SL Triticum
aestivum cDNA clone whsl20b06 3', mRNA sequence
Length = 727
Score = 69.9 bits (35), Expect = 2e-010
Identities = 50/55 (90%)
Strand = Plus / Minus
Query: 533 gccaggatggcgaaaggctctatagactatgttggcatcaaccactacacttctt 587
|||||||||| ||||||||| || ||||||||||| |||||||| ||||||||||
Sbjct: 667 gccaggatggtgaaaggctccattgactatgttggtatcaaccaatacacttctt 613
>gb|CD901201.1|CD901201 G356.103B15F010918 G356 Triticum aestivum cDNA clone G356103B15,
mRNA sequence
Length = 582
Score = 67.9 bits (34), Expect = 8e-010
Identities = 49/54 (90%)
Strand = Plus / Plus
Query: 534 ccaggatggcgaaaggctctatagactatgttggcatcaaccactacacttctt 587
||||||||| ||||||||| || ||||||||||| |||||||| ||||||||||
Sbjct: 169 ccaggatggtgaaaggctccattgactatgttggtatcaaccagtacacttctt 222
Score = 56.0 bits (28), Expect = 3e-006
Identities = 64/76 (84%)
Strand = Plus / Plus
Query: 385 cagcgacagcaatgcggaccaggctgcagcacagcgagccagggacttccacctaggctg 444
|||||||||||| ||||| || ||||| || ||| | || |||||||||||| | || ||
Sbjct: 20 cagcgacagcaacgcggatcaagctgcggcgcagagggcaagggacttccacattggatg 79
Query: 445 gttccttgaccccatt 460
|||||| |||||||||
Sbjct: 80 gttcctcgaccccatt 95
>gb|CD901202.1|CD901202 G356.103B15R011023 G356 Triticum aestivum cDNA clone G356103B15,
mRNA sequence
Length = 718
Score = 67.9 bits (34), Expect = 8e-010
Identities = 49/54 (90%)
Strand = Plus / Minus
Query: 534 ccaggatggcgaaaggctctatagactatgttggcatcaaccactacacttctt 587
||||||||| ||||||||| || ||||||||||| |||||||| ||||||||||
Sbjct: 712 ccaggatggtgaaaggctccattgactatgttggtatcaaccagtacacttctt 659
>gb|CD904301.1|CD904301 G356.113B20F010920 G356 Triticum aestivum cDNA clone G356113B20,
mRNA sequence
Length = 723
Score = 67.9 bits (34), Expect = 8e-010
Identities = 49/54 (90%)
Strand = Plus / Plus
Query: 534 ccaggatggcgaaaggctctatagactatgttggcatcaaccactacacttctt 587
||||||||| ||||||||| || ||||||||||| |||||||| ||||||||||
Sbjct: 69 ccaggatggtgaaaggctccattgactatgttggtatcaaccagtacacttctt 122
>gb|CD910014.1|CD910014 G468.114C14F010821 G468 Triticum aestivum cDNA clone G468114C14,
mRNA sequence
Length = 670
Score = 67.9 bits (34), Expect = 8e-010
Identities = 49/54 (90%)
Strand = Plus / Plus
Query: 534 ccaggatggcgaaaggctctatagactatgttggcatcaaccactacacttctt 587
||||||||| ||||||||| || ||||||||||| |||||||| ||||||||||
Sbjct: 70 ccaggatggtgaaaggctccattgactatgttggtatcaaccagtacacttctt 123
>gb|CD916238.1|CD916238 G550.129N10R010921 G550 Triticum aestivum cDNA clone G550129N10,
mRNA sequence
Length = 713
Score = 67.9 bits (34), Expect = 8e-010
Identities = 49/54 (90%)
Strand = Plus / Minus
Query: 534 ccaggatggcgaaaggctctatagactatgttggcatcaaccactacacttctt 587
||||||||| ||||||||| || ||||||||||| |||||||| ||||||||||
Sbjct: 687 ccaggatggtgaaaggctccattgactatgttggtatcaaccagtacacttctt 634
>gb|CD919997.1|CD919997 G608.115H03F010912 G608 Triticum aestivum cDNA clone G608115H03,
mRNA sequence
Length = 675
Score = 67.9 bits (34), Expect = 8e-010
Identities = 49/54 (90%)
Strand = Plus / Plus
Query: 534 ccaggatggcgaaaggctctatagactatgttggcatcaaccactacacttctt 587
||||||||| ||||||||| || ||||||||||| |||||||| ||||||||||
Sbjct: 20 ccaggatggtgaaaggctccattgactatgttggtatcaaccagtacacttctt 73
>gb|BE404991.1|BE404991 WHE1208_F10_L20ZS Wheat etiolated seedling root cDNA library
Triticum aestivum cDNA clone WHE1208_F10_L20, mRNA
sequence
Length = 580
Score = 58.0 bits (29), Expect = 7e-007
Identities = 38/41 (92%)
Strand = Plus / Plus
Query: 125 ttcggagacagggtgaagaactggtttaccttcaacgagcc 165
||||| |||||||||||||||||||| ||||| ||||||||
Sbjct: 27 ttcggcgacagggtgaagaactggttcacctttaacgagcc 67
>gb|BE405598.1|BE405598 WHE1209_B10_C19ZS Wheat etiolated seedling root cDNA library
Triticum aestivum cDNA clone WHE1209_B10_C19, mRNA
sequence
Length = 591
Score = 58.0 bits (29), Expect = 7e-007
Identities = 38/41 (92%)
Strand = Plus / Plus
Query: 125 ttcggagacagggtgaagaactggtttaccttcaacgagcc 165
||||| |||||||||||||||||||| ||||| ||||||||
Sbjct: 43 ttcggcgacagggtgaagaactggttcacctttaacgagcc 83
>gb|BF293059.1|BF293059 WHE2160_B02_C04ZS Triticum turgidum L. var. durum (durum wheat)
whole plant cDNA library Triticum turgidum cDNA clone
WHE2160_B02_C04, mRNA sequence
Length = 600
Score = 58.0 bits (29), Expect = 7e-007
Identities = 38/41 (92%)
Strand = Plus / Plus
Query: 125 ttcggagacagggtgaagaactggtttaccttcaacgagcc 165
||||| |||||||||||||||||||| ||||| ||||||||
Sbjct: 191 ttcggcgacagggtgaagaactggttcacctttaacgagcc 231
>gb|BJ225220.1|BJ225220 BJ225220 Y. Ogihara unpublished cDNA library, Wh_dL Triticum
aestivum cDNA clone whdl21b19 5', mRNA sequence
Length = 673
Score = 58.0 bits (29), Expect = 7e-007
Identities = 38/41 (92%)
Strand = Plus / Plus
Query: 125 ttcggagacagggtgaagaactggtttaccttcaacgagcc 165
||||| |||||||||||||||||||| ||||| ||||||||
Sbjct: 624 ttcggtgacagggtgaagaactggttcacctttaacgagcc 664
>gb|BJ226024.1|BJ226024 BJ226024 Y. Ogihara unpublished cDNA library, Wh_dL Triticum
aestivum cDNA clone whdl24m14 5', mRNA sequence
Length = 527
Score = 58.0 bits (29), Expect = 7e-007
Identities = 38/41 (92%)
Strand = Plus / Plus
Query: 125 ttcggagacagggtgaagaactggtttaccttcaacgagcc 165
||||| |||||||||||||||||||| ||||| ||||||||
Sbjct: 184 ttcggcgacagggtgaagaactggttcacctttaacgagcc 224
>gb|BQ483738.1|BQ483738 WHE3512_A07_B14ZS Wheat unstressed root cDNA library Triticum
aestivum cDNA clone WHE3512_A07_B14, mRNA sequence
Length = 687
Score = 58.0 bits (29), Expect = 7e-007
Identities = 38/41 (92%)
Strand = Plus / Plus
Query: 125 ttcggagacagggtgaagaactggtttaccttcaacgagcc 165
||||| |||||||||||||||||||| ||||| ||||||||
Sbjct: 40 ttcggtgacagggtgaagaactggttcacctttaacgagcc 80
>gb|BQ838201.1|BQ838201 WHE2907_F12_L23ZS Wheat aluminum-stressed root tip cDNA library
Triticum aestivum cDNA clone WHE2907_F12_L23, mRNA
sequence
Length = 763
Score = 58.0 bits (29), Expect = 7e-007
Identities = 38/41 (92%)
Strand = Plus / Plus
Query: 125 ttcggagacagggtgaagaactggtttaccttcaacgagcc 165
||||| |||||||||||||||||||| ||||| ||||||||
Sbjct: 711 ttcggtgacagggtgaagaactggttcacctttaacgagcc 751
>gb|BU101211.1|BU101211 WHE3366_B10_D20ZS Chinese Spring aluminum-stressed root tip cDNA
library Triticum aestivum cDNA clone WHE3366_B10_D20,
mRNA sequence
Length = 581
Score = 58.0 bits (29), Expect = 7e-007
Identities = 38/41 (92%)
Strand = Plus / Plus
Query: 125 ttcggagacagggtgaagaactggtttaccttcaacgagcc 165
||||| |||||||||||||||||||| ||||| ||||||||
Sbjct: 397 ttcggtgacagggtgaagaactggttcacctttaacgagcc 437
>gb|CA601536.1|CA601536 wr1.pk0004.e12 wr1 Triticum aestivum cDNA clone wr1.pk0004.e12 5'
end, mRNA sequence
Length = 547
Score = 58.0 bits (29), Expect = 7e-007
Identities = 38/41 (92%)
Strand = Plus / Plus
Query: 125 ttcggagacagggtgaagaactggtttaccttcaacgagcc 165
||||| |||||||||||||||||||| ||||| ||||||||
Sbjct: 206 ttcggcgacagggtgaagaactggttcacctttaacgagcc 246
>gb|CA607489.1|CA607489 wr1.pk0078.f10 wr1 Triticum aestivum cDNA clone wr1.pk0078.f10 5'
end, mRNA sequence
Length = 514
Score = 58.0 bits (29), Expect = 7e-007
Identities = 38/41 (92%)
Strand = Plus / Plus
Query: 125 ttcggagacagggtgaagaactggtttaccttcaacgagcc 165
||||| |||||||||||||||||||| ||||| ||||||||
Sbjct: 313 ttcggcgacagggtgaagaactggttcacctttaacgagcc 353
>gb|CA612779.1|CA612779 wr1.pk0143.e6 wr1 Triticum aestivum cDNA clone wr1.pk0143.e6 5'
end, mRNA sequence
Length = 502
Score = 58.0 bits (29), Expect = 7e-007
Identities = 38/41 (92%)
Strand = Plus / Plus
Query: 125 ttcggagacagggtgaagaactggtttaccttcaacgagcc 165
||||| |||||||||||||||||||| ||||| ||||||||
Sbjct: 190 ttcggcgacagggtgaagaactggttcacctttaacgagcc 230
>gb|CA632146.1|CA632146 wle1n.pk0049.g9 wle1n Triticum aestivum cDNA clone wle1n.pk0049.g9
5' end, mRNA sequence
Length = 574
Score = 58.0 bits (29), Expect = 7e-007
Identities = 38/41 (92%)
Strand = Plus / Plus
Query: 125 ttcggagacagggtgaagaactggtttaccttcaacgagcc 165
||||| |||||||||||||||||||| ||||| ||||||||
Sbjct: 100 ttcggcgacagggtgaagaactggttcacctttaacgagcc 140
>gb|CB307317.1|CB307317 HFIG302 Hessian fly infested cDNA library Triticum aestivum cDNA,
mRNA sequence
Length = 506
Score = 58.0 bits (29), Expect = 7e-007
Identities = 38/41 (92%)
Strand = Plus / Plus
Query: 125 ttcggagacagggtgaagaactggtttaccttcaacgagcc 165
||||| |||||||||||||||||||| ||||| ||||||||
Sbjct: 175 ttcggtgacagggtgaagaactggttcacctttaacgagcc 215
>gb|CB307758.1|CB307758 HFIG743 Hessian fly infested cDNA library Triticum aestivum cDNA,
mRNA sequence
Length = 645
Score = 58.0 bits (29), Expect = 7e-007
Identities = 38/41 (92%)
Strand = Plus / Plus
Query: 125 ttcggagacagggtgaagaactggtttaccttcaacgagcc 165
||||| |||||||||||||||||||| ||||| ||||||||
Sbjct: 458 ttcggcgacagggtgaagaactggttcacctttaacgagcc 498
>gb|CK157758.1|CK157758 FGAS038920 Triticum aestivum FGAS: TaLt4 Triticum aestivum cDNA,
mRNA sequence
Length = 862
Score = 58.0 bits (29), Expect = 7e-007
Identities = 38/41 (92%)
Strand = Plus / Plus
Query: 125 ttcggagacagggtgaagaactggtttaccttcaacgagcc 165
||||| |||||||||||||||||||| ||||| ||||||||
Sbjct: 188 ttcggcgacagggtgaagaactggttcacctttaacgagcc 228
>gb|CK162235.1|CK162235 FGAS014823 Triticum aestivum FGAS: Library 4 Gate 8 Triticum
aestivum cDNA, mRNA sequence
Length = 1160
Score = 58.0 bits (29), Expect = 7e-007
Identities = 38/41 (92%)
Strand = Plus / Plus
Query: 125 ttcggagacagggtgaagaactggtttaccttcaacgagcc 165
||||| |||||||||||||||||||| ||||| ||||||||
Sbjct: 157 ttcggcgacagggtgaagaactggttcacctttaacgagcc 197
>gb|BJ297136.1|BJ297136 BJ297136 Y. Ogihara unpublished cDNA library, Wh_SL Triticum
aestivum cDNA clone whsl19e07 3', mRNA sequence
Length = 652
Score = 56.0 bits (28), Expect = 3e-006
Identities = 40/44 (90%)
Strand = Plus / Minus
Query: 544 gaaaggctctatagactatgttggcatcaaccactacacttctt 587
||||||||| || ||||||||||| |||||||| ||||||||||
Sbjct: 649 gaaaggctccattgactatgttggtatcaaccagtacacttctt 606
>gb|CK157171.1|CK157171 FGAS038260 Triticum aestivum FGAS: TaLt4 Triticum aestivum cDNA,
mRNA sequence
Length = 884
Score = 54.0 bits (27), Expect = 1e-005
Identities = 33/35 (94%)
Strand = Plus / Minus
Query: 131 gacagggtgaagaactggtttaccttcaacgagcc 165
|||||||||||||||||||| ||||| ||||||||
Sbjct: 796 gacagggtgaagaactggttcacctttaacgagcc 762
>gb|CF133449.1|CF133449 WHE4358_B04_D08ZT Wheat meiotic floret cDNA library Triticum
aestivum cDNA clone WHE4358_B04_D08, mRNA sequence
Length = 730
Score = 50.1 bits (25), Expect = 2e-004
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 125 ttcggagacagggtgaagaactggtttaccttcaacg 161
||||| |||||||||||||||||||| ||||| ||||
Sbjct: 694 ttcggcgacagggtgaagaactggttcacctttaacg 730
>gb|BF483955.1|BF483955 WHE2306_E09_I18ZS Wheat pre-anthesis spike cDNA library Triticum
aestivum cDNA clone WHE2306_E09_I18, mRNA sequence
Length = 230
Score = 48.1 bits (24), Expect = 7e-004
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 135 gggtgaagaactggtttaccttcaacgagccg 166
|||||||||||||||| ||| |||||||||||
Sbjct: 62 gggtgaagaactggttcaccatcaacgagccg 93
>gb|BG605161.1|BG605161 WHE2328_C01_F02ZS Wheat pre-anthesis spike cDNA library Triticum
aestivum cDNA clone WHE2328_C01_F02, mRNA sequence
Length = 654
Score = 48.1 bits (24), Expect = 7e-004
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 135 gggtgaagaactggtttaccttcaacgagccg 166
|||||||||||||||| ||| |||||||||||
Sbjct: 551 gggtgaagaactggttcaccatcaacgagccg 582
>gb|CD918514.1|CD918514 G608.109L21F010907 G608 Triticum aestivum cDNA clone G608109L21,
mRNA sequence
Length = 599
Score = 46.1 bits (23), Expect = 0.003
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 557 gactatgttggcatcaaccactacacttctt 587
||||||||||| |||||||| ||||||||||
Sbjct: 6 gactatgttggtatcaaccagtacacttctt 36
>gb|CK155965.1|CK155965 FGAS036855 Triticum aestivum FGAS: TaLt4 Triticum aestivum cDNA,
mRNA sequence
Length = 850
Score = 44.1 bits (22), Expect = 0.011
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 125 ttcggagacagggtgaagaactggtt 150
||||| ||||||||||||||||||||
Sbjct: 666 ttcggcgacagggtgaagaactggtt 691
>gb|CA485236.1|CA485236 WHE4316_B10_D20ZS Wheat meiotic anther cDNA library Triticum
aestivum cDNA clone WHE4316_B10_D20, mRNA sequence
Length = 668
Score = 42.1 bits (21), Expect = 0.043
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 238 aggcaactccaccacggaaccgtac 262
||||||||||||||| |||||||||
Sbjct: 475 aggcaactccaccacagaaccgtac 499
>gb|CA487050.1|CA487050 WHE4340_A07_B14ZS Wheat meiotic anther cDNA library Triticum
aestivum cDNA clone WHE4340_A07_B14, mRNA sequence
Length = 661
Score = 42.1 bits (21), Expect = 0.043
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 238 aggcaactccaccacggaaccgtac 262
||||||||||||||| |||||||||
Sbjct: 34 aggcaactccaccacagaaccgtac 58
>gb|BE516840.1|BE516840 WHE620_B05_D10ZA Wheat ABA-treated embryo cDNA library Triticum
aestivum cDNA clone WHE620_B05_D10, mRNA sequence
Length = 519
Score = 40.1 bits (20), Expect = 0.17
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 cggccgcgtcgacaaatctc 20
||||||||||||||||||||
Sbjct: 4 cggccgcgtcgacaaatctc 23
>gb|BJ235347.1|BJ235347 BJ235347 Y. Ogihara unpublished cDNA library, Wh_e Triticum
aestivum cDNA clone whe16c10 5', mRNA sequence
Length = 646
Score = 40.1 bits (20), Expect = 0.17
Identities = 38/44 (86%)
Strand = Plus / Plus
Query: 122 gcgttcggagacagggtgaagaactggtttaccttcaacgagcc 165
||||| || |||||||||||| |||| | ||||||||||||||
Sbjct: 601 gcgtttggggacagggtgaagcgctggatcaccttcaacgagcc 644
Database: Triticum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 3:01 PM
Number of letters in database: 367,240,239
Number of sequences in database: 636,343
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 113,200
Number of Sequences: 636343
Number of extensions: 113200
Number of successful extensions: 33160
Number of sequences better than 0.5: 41
Number of HSP's better than 0.5 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 33104
Number of HSP's gapped (non-prelim): 49
length of query: 598
length of database: 367,240,239
effective HSP length: 19
effective length of query: 579
effective length of database: 355,149,722
effective search space: 205631689038
effective search space used: 205631689038
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)