BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3713493.2.1
(696 letters)
Database: Triticum_nucl_with_EST.fasta
636,343 sequences; 367,240,239 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CA627122.1|CA627122 wl1n.pk152.h1 wl1n Triticum aestivum... 710 0.0
gb|BQ237161.1|BQ237161 TaE05021A03F TaE05 Triticum aestivum... 117 1e-024
gb|CD934031.1|CD934031 GR45.122M12R010831 GR45 Triticum aes... 109 3e-022
gb|CK161226.1|CK161226 FGAS013791 Triticum aestivum FGAS: L... 109 3e-022
gb|CA665939.1|CA665939 wlk1.pk0023.h8 wlk1 Triticum aestivu... 105 4e-021
gb|CA706232.1|CA706232 wdk1c.pk023.m21 wdk1c Triticum aesti... 96 4e-018
gb|CD896602.1|CD896602 G174.103F20F010822 G174 Triticum aes... 72 6e-011
gb|BQ901658.1|BQ901658 Ta02_14e03_R Ta02_AAFC_ECORC_Fusariu... 56 3e-006
gb|CA634314.1|CA634314 wle1n.pk0077.d7 wle1n Triticum aesti... 56 3e-006
>gb|CA627122.1|CA627122 wl1n.pk152.h1 wl1n Triticum aestivum cDNA clone wl1n.pk152.h1 5'
end, mRNA sequence
Length = 495
Score = 710 bits (358), Expect = 0.0
Identities = 388/396 (97%), Gaps = 2/396 (0%)
Strand = Plus / Minus
Query: 298 ccacaaccacgatagggggcagctgaattattgcgtggttcagtcgaggaaattattcct 357
||||| |||||||||||| ||| ||| |||||||||||||||||||||||| |||||| |
Sbjct: 492 ccacacccacgatagggg-cagttga-ttattgcgtggttcagtcgaggaanttattcnt 435
Query: 358 atggcaggcaggaggcgtggagatttcggatctcatgggctcatggccctgaccttcttc 417
|||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||
Sbjct: 434 atggcaggcaggaggcgtggagatttcgaatctcatgggctcatggccctgtccttcttc 375
Query: 418 ccacagcggtagacagtagcaacagcatcagtctactacatggctgctgctccaccgttg 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 ccacagcggtagacagtagcaacagcatcagtctactacatggctgctgctccaccgttg 315
Query: 478 gacggccaggtcacggcaatggggctcgtgacgtcgtgcgcgccgtcgctccaggtgatg 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 gacggccaggtcacggcaatggggctcgtgacgtcgtgcgcgccgtcgctccaggtgatg 255
Query: 538 gatccgaacgagtagctggaatccacgatcaccgggttgcctgacactgcgatggtgatt 597
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 gatccgaacgagtagctggaatccacgatcaccgggttgcctgacactgcgatggtgatt 195
Query: 598 tcgtatcccaggctctgctgcttcccgtcgaacgcgagcttgctcggggtcaccgtgaca 657
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 194 tcgtatcccaggctctgctgcttcccgtcgaacgcgagcttgctcggggtcaccgtgaca 135
Query: 658 tccacgccgtacgggctggcgatcgtcggctggtac 693
||||||||||||||||||||||||||||||||||||
Sbjct: 134 tccacgccgtacgggctggcgatcgtcggctggtac 99
>gb|BQ237161.1|BQ237161 TaE05021A03F TaE05 Triticum aestivum cDNA clone TaE05021A03F, mRNA
sequence
Length = 275
Score = 117 bits (59), Expect = 1e-024
Identities = 155/187 (82%)
Strand = Plus / Plus
Query: 480 cggccaggtcacggcaatggggctcgtgacgtcgtgcgcgccgtcgctccaggtgatgga 539
|||||| |||||||| |||||||||||||| | |||| |||||||||||| |||| |||
Sbjct: 66 cggccacgtcacggcgatggggctcgtgacattgtgcttgccgtcgctccacgtgacgga 125
Query: 540 tccgaacgagtagctggaatccacgatcaccgggttgcctgacactgcgatggtgatttc 599
||||||||||| ||| |||||||||||||||||||| ||||| |||| |||||| ||
Sbjct: 126 cccgaacgagtacttggcgtccacgatcaccgggttgccggacacggcgagggtgatctc 185
Query: 600 gtatcccaggctctgctgcttcccgtcgaacgcgagcttgctcggggtcaccgtgacatc 659
||| |||||||| | |||| | ||||||| | |||||| ||| |||||| || | ||
Sbjct: 186 gtacgccaggctccggtgctcctggtcgaacaccagcttggccggcgtcaccttggcgtc 245
Query: 660 cacgccg 666
|||||||
Sbjct: 246 cacgccg 252
>gb|CD934031.1|CD934031 GR45.122M12R010831 GR45 Triticum aestivum cDNA clone GR45122M12,
mRNA sequence
Length = 579
Score = 109 bits (55), Expect = 3e-022
Identities = 154/187 (82%)
Strand = Plus / Plus
Query: 480 cggccaggtcacggcaatggggctcgtgacgtcgtgcgcgccgtcgctccaggtgatgga 539
|||||| |||||||| |||||||||||||| | |||| |||||||||||| |||| ||
Sbjct: 153 cggccatgtcacggcgatggggctcgtgacattgtgcttgccgtcgctccacgtgaccga 212
Query: 540 tccgaacgagtagctggaatccacgatcaccgggttgcctgacactgcgatggtgatttc 599
||||||||||| ||| |||||||||||||||||||| ||||| || | |||||| ||
Sbjct: 213 cccgaacgagtacttggcgtccacgatcaccgggttgccggacacggccagggtgatctc 272
Query: 600 gtatcccaggctctgctgcttcccgtcgaacgcgagcttgctcggggtcaccgtgacatc 659
||| |||||||| | |||| | |||||||| | |||||| ||| |||||| || | ||
Sbjct: 273 gtacgccaggctccggtgctcctcgtcgaacaccagcttggccggcgtcaccttggcgtc 332
Query: 660 cacgccg 666
|||||||
Sbjct: 333 cacgccg 339
>gb|CK161226.1|CK161226 FGAS013791 Triticum aestivum FGAS: Library 4 Gate 8 Triticum
aestivum cDNA, mRNA sequence
Length = 1139
Score = 109 bits (55), Expect = 3e-022
Identities = 154/187 (82%)
Strand = Plus / Minus
Query: 480 cggccaggtcacggcaatggggctcgtgacgtcgtgcgcgccgtcgctccaggtgatgga 539
|||||| |||||||| |||||||||||||| | |||| |||||||||||| |||| ||
Sbjct: 582 cggccatgtcacggcgatggggctcgtgacattgtgcttgccgtcgctccacgtgaccga 523
Query: 540 tccgaacgagtagctggaatccacgatcaccgggttgcctgacactgcgatggtgatttc 599
||||||||||| ||| |||||||||||||||||||| ||||| || | |||||| ||
Sbjct: 522 cccgaacgagtacttggcgtccacgatcaccgggttgccggacacggccagggtgatctc 463
Query: 600 gtatcccaggctctgctgcttcccgtcgaacgcgagcttgctcggggtcaccgtgacatc 659
||| |||||||| | |||| | |||||||| | |||||| ||| |||||| || | ||
Sbjct: 462 gtacgccaggctccggtgctcctcgtcgaacaccagcttggccggcgtcaccttggcgtc 403
Query: 660 cacgccg 666
|||||||
Sbjct: 402 cacgccg 396
>gb|CA665939.1|CA665939 wlk1.pk0023.h8 wlk1 Triticum aestivum cDNA clone wlk1.pk0023.h8 5'
end, mRNA sequence
Length = 513
Score = 105 bits (53), Expect = 4e-021
Identities = 101/117 (86%)
Strand = Plus / Plus
Query: 480 cggccaggtcacggcaatggggctcgtgacgtcgtgcgcgccgtcgctccaggtgatgga 539
|||||| |||||||| |||||||||||||| | |||| |||||||||||| |||| |||
Sbjct: 97 cggccacgtcacggcgatggggctcgtgacattgtgcttgccgtcgctccacgtgacgga 156
Query: 540 tccgaacgagtagctggaatccacgatcaccgggttgcctgacactgcgatggtgat 596
||||||||||| ||| |||||||||||||||||||| ||||| |||| ||||||
Sbjct: 157 cccgaacgagtacttggcgtccacgatcaccgggttgccggacacggcgagggtgat 213
>gb|CA706232.1|CA706232 wdk1c.pk023.m21 wdk1c Triticum aestivum cDNA clone wdk1c.pk023.m21
5' end, mRNA sequence
Length = 417
Score = 95.6 bits (48), Expect = 4e-018
Identities = 151/186 (81%)
Strand = Plus / Plus
Query: 480 cggccaggtcacggcaatggggctcgtgacgtcgtgcgcgccgtcgctccaggtgatgga 539
|||||| |||||||| |||||||||||||| | |||| |||||||||||| |||| ||
Sbjct: 43 cggccacgtcacggcgatggggctcgtgacattgtgcttgccgtcgctccacgtgaccga 102
Query: 540 tccgaacgagtagctggaatccacgatcaccgggttgcctgacactgcgatggtgatttc 599
||||||||||| || |||||||||||||||||||| ||| | | | |||||| ||
Sbjct: 103 cccgaacgagtacttgccgtccacgatcaccgggttgccggacgcggncagggtgatctc 162
Query: 600 gtatcccaggctctgctgcttcccgtcgaacgcgagcttgctcggggtcaccgtgacatc 659
||| |||||||| | |||| | |||||||| | |||||| ||| ||||||||| | ||
Sbjct: 163 gtacgccaggctccggtgctcctcgtcgaacaccagcttggncggcgtcaccgtggcgtc 222
Query: 660 cacgcc 665
||||||
Sbjct: 223 cacgcc 228
>gb|CD896602.1|CD896602 G174.103F20F010822 G174 Triticum aestivum cDNA clone G174103F20,
mRNA sequence
Length = 618
Score = 71.9 bits (36), Expect = 6e-011
Identities = 142/176 (80%), Gaps = 1/176 (0%)
Strand = Plus / Minus
Query: 491 cggcaatggggctcgtgacgtcgtgcgcgccgtcgctcc-aggtgatggatccgaacgag 549
|||| |||||||||||||| | |||| ||||||||||| | |||| || |||||||||
Sbjct: 589 cggcgatggggctcgtgacattgtgcttgccgtcgctcccacgtgaccgacccgaacgag 530
Query: 550 tagctggaatccacgatcaccgggttgcctgacactgcgatggtgatttcgtatcccagg 609
|| || |||||||||||||||||||| ||| | || | |||||| ||||| |||||
Sbjct: 529 tacttgccgtccacgatcaccgggttgccggacgcggccagggtgatctcgtacgccagg 470
Query: 610 ctctgctgcttcccgtcgaacgcgagcttgctcggggtcaccgtgacatccacgcc 665
||| | |||| | |||||||| | |||||| ||| ||||||||| | ||||||||
Sbjct: 469 ctccggtgctcctcgtcgaacaccagcttggccggcgtcaccgtggcgtccacgcc 414
>gb|BQ901658.1|BQ901658 Ta02_14e03_R
Ta02_AAFC_ECORC_Fusarium_graminearum_inoculated_wheat_he
ads Triticum aestivum cDNA clone Ta02_14e03, mRNA
sequence
Length = 187
Score = 56.0 bits (28), Expect = 3e-006
Identities = 49/56 (87%)
Strand = Plus / Plus
Query: 480 cggccaggtcacggcaatggggctcgtgacgtcgtgcgcgccgtcgctccaggtga 535
|||||| |||||||| |||||||||||||| | |||| |||||||||||| ||||
Sbjct: 117 cggccacgtcacggcgatggggctcgtgacattgtgcttgccgtcgctccacgtga 172
>gb|CA634314.1|CA634314 wle1n.pk0077.d7 wle1n Triticum aestivum cDNA clone wle1n.pk0077.d7
5' end, mRNA sequence
Length = 199
Score = 56.0 bits (28), Expect = 3e-006
Identities = 87/107 (81%)
Strand = Plus / Minus
Query: 559 tccacgatcaccgggttgcctgacactgcgatggtgatttcgtatcccaggctctgctgc 618
|||||||||||||||||||| ||| | | | |||||| ||||| |||||||| | |||
Sbjct: 163 tccacgatcaccgggttgccggacgcgnccagggtgatctcgtacgccaggctccggtgc 104
Query: 619 ttcccgtcgaacgcgagcttgctcggggtcaccgtgacatccacgcc 665
| | |||||||| | |||||| ||| ||||||||| | ||||||||
Sbjct: 103 tcctcgtcgaacaccagcttggccggcgtcaccgtggcgtccacgcc 57
Database: Triticum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 3:01 PM
Number of letters in database: 367,240,239
Number of sequences in database: 636,343
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 151,760
Number of Sequences: 636343
Number of extensions: 151760
Number of successful extensions: 64156
Number of sequences better than 0.5: 9
Number of HSP's better than 0.5 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 64144
Number of HSP's gapped (non-prelim): 9
length of query: 696
length of database: 367,240,239
effective HSP length: 19
effective length of query: 677
effective length of database: 355,149,722
effective search space: 240436361794
effective search space used: 240436361794
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)