BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3712967.2.1
(571 letters)
Database: Triticum_nucl_with_EST.fasta
636,343 sequences; 367,240,239 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BJ244140.1|BJ244140 BJ244140 Y. Ogihara unpublished cDNA... 54 1e-005
gb|BJ249930.1|BJ249930 BJ249930 Y. Ogihara unpublished cDNA... 54 1e-005
gb|BJ250225.1|BJ250225 BJ250225 Y. Ogihara unpublished cDNA... 50 2e-004
gb|BJ251281.1|BJ251281 BJ251281 Y. Ogihara unpublished cDNA... 50 2e-004
emb|AX660733.1| Sequence 1090 from Patent WO03000906 48 7e-004
gb|BJ243936.1|BJ243936 BJ243936 Y. Ogihara unpublished cDNA... 46 0.003
gb|BJ245820.1|BJ245820 BJ245820 Y. Ogihara unpublished cDNA... 46 0.003
gb|BJ251252.1|BJ251252 BJ251252 Y. Ogihara unpublished cDNA... 46 0.003
gb|BJ251714.1|BJ251714 BJ251714 Y. Ogihara unpublished cDNA... 46 0.003
gb|BJ285920.1|BJ285920 BJ285920 Y. Ogihara unpublished cDNA... 46 0.003
gb|BE606718.1|BE606718 WHE0907_G06_N11ZS Wheat 5-15 DAP spi... 42 0.041
gb|BJ280628.1|BJ280628 BJ280628 Y. Ogihara unpublished cDNA... 42 0.041
gb|BQ237503.1|BQ237503 TaE05016A10F TaE05 Triticum aestivum... 42 0.041
gb|BQ246691.1|BQ246691 TaE15006H08R TaE15 Triticum aestivum... 42 0.041
gb|BQ246778.1|BQ246778 TaE15005F05R TaE15 Triticum aestivum... 42 0.041
gb|BQ619661.1|BQ619661 TaLr1175D01F TaLr1 Triticum aestivum... 42 0.041
gb|AL822808.1|AL822808 AL822808 p:335 Triticum aestivum cDN... 42 0.041
gb|BQ838628.1|BQ838628 WHE2912_H01_P02ZS Wheat aluminum-str... 42 0.041
gb|CA631313.1|CA631313 wle1n.pk0041.g7 wle1n Triticum aesti... 42 0.041
gb|CA654086.1|CA654086 wre1n.pk161.f7 wre1n Triticum aestiv... 42 0.041
gb|CA654119.1|CA654119 wre1n.pk161.e7 wre1n Triticum aestiv... 42 0.041
gb|CD863937.1|CD863937 AZO1.108J15F010131 AZO1 Triticum aes... 42 0.041
gb|CD863938.1|CD863938 AZO1.108J15R010507 AZO1 Triticum aes... 42 0.041
gb|CK209225.1|CK209225 FGAS020979 Triticum aestivum FGAS: L... 42 0.041
gb|CV777756.1|CV777756 FGAS072163 Triticum aestivum FGAS: L... 42 0.041
gb|AY453155.1| Triticum aestivum low molecular weight glute... 42 0.041
gb|BJ254306.1|BJ254306 BJ254306 Y. Ogihara unpublished cDNA... 40 0.16
gb|BJ254574.1|BJ254574 BJ254574 Y. Ogihara unpublished cDNA... 40 0.16
gb|CA593973.1|CA593973 wpa1c.pk004.c19 wpa1c Triticum aesti... 40 0.16
gb|CA614639.1|CA614639 wr1.pk184.h1 wr1 Triticum aestivum c... 40 0.16
gb|CA618135.1|CA618135 wl1n.pk0030.h5 wl1n Triticum aestivu... 40 0.16
gb|CA650212.1|CA650212 wre1n.pk0151.h8 wre1n Triticum aesti... 40 0.16
gb|CK205310.1|CK205310 FGAS016780 Triticum aestivum FGAS: L... 40 0.16
gb|CK208585.1|CK208585 FGAS020299 Triticum aestivum FGAS: L... 40 0.16
gb|CF569196.1|CF569196 EST057 Subtracted, Clontech (cat. # ... 40 0.16
>gb|BJ244140.1|BJ244140 BJ244140 Y. Ogihara unpublished cDNA library, Wh_f Triticum
aestivum cDNA clone whf14g15 5', mRNA sequence
Length = 591
Score = 54.0 bits (27), Expect = 1e-005
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 77 tacctgggccggccgtggaaggagttc 103
|||||||||||||||||||||||||||
Sbjct: 336 tacctgggccggccgtggaaggagttc 362
>gb|BJ249930.1|BJ249930 BJ249930 Y. Ogihara unpublished cDNA library, Wh_f Triticum
aestivum cDNA clone whf14g15 3', mRNA sequence
Length = 712
Score = 54.0 bits (27), Expect = 1e-005
Identities = 27/27 (100%)
Strand = Plus / Minus
Query: 77 tacctgggccggccgtggaaggagttc 103
|||||||||||||||||||||||||||
Sbjct: 524 tacctgggccggccgtggaaggagttc 498
>gb|BJ250225.1|BJ250225 BJ250225 Y. Ogihara unpublished cDNA library, Wh_f Triticum
aestivum cDNA clone whf9k15 3', mRNA sequence
Length = 701
Score = 50.1 bits (25), Expect = 2e-004
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 79 cctgggccggccgtggaaggagttc 103
|||||||||||||||||||||||||
Sbjct: 533 cctgggccggccgtggaaggagttc 509
>gb|BJ251281.1|BJ251281 BJ251281 Y. Ogihara unpublished cDNA library, Wh_f Triticum
aestivum cDNA clone whf19g21 3', mRNA sequence
Length = 576
Score = 50.1 bits (25), Expect = 2e-004
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 79 cctgggccggccgtggaaggagttc 103
|||||||||||||||||||||||||
Sbjct: 503 cctgggccggccgtggaaggagttc 479
>emb|AX660733.1| Sequence 1090 from Patent WO03000906
Length = 712
Score = 48.1 bits (24), Expect = 7e-004
Identities = 42/48 (87%)
Strand = Plus / Plus
Query: 77 tacctgggccggccgtggaaggagttcgcgaggacggtggtgatggag 124
||||| || |||||||||||||| | | ||||||||||||| ||||||
Sbjct: 163 tacctcggacggccgtggaaggaatactcgaggacggtggtcatggag 210
>gb|BJ243936.1|BJ243936 BJ243936 Y. Ogihara unpublished cDNA library, Wh_f Triticum
aestivum cDNA clone whf13h13 5', mRNA sequence
Length = 582
Score = 46.1 bits (23), Expect = 0.003
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 77 tacctgggccggccgtggaaggagttc 103
||||||||| |||||||||||||||||
Sbjct: 404 tacctgggcaggccgtggaaggagttc 430
>gb|BJ245820.1|BJ245820 BJ245820 Y. Ogihara unpublished cDNA library, Wh_f Triticum
aestivum cDNA clone whf20e17 5', mRNA sequence
Length = 665
Score = 46.1 bits (23), Expect = 0.003
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 77 tacctgggccggccgtggaaggagttc 103
||||||||| |||||||||||||||||
Sbjct: 593 tacctgggcaggccgtggaaggagttc 619
>gb|BJ251252.1|BJ251252 BJ251252 Y. Ogihara unpublished cDNA library, Wh_f Triticum
aestivum cDNA clone whf19e14 3', mRNA sequence
Length = 613
Score = 46.1 bits (23), Expect = 0.003
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 77 tacctgggccggccgtggaaggagttc 103
||||||||| |||||||||||||||||
Sbjct: 492 tacctgggcaggccgtggaaggagttc 466
>gb|BJ251714.1|BJ251714 BJ251714 Y. Ogihara unpublished cDNA library, Wh_f Triticum
aestivum cDNA clone whf20e17 3', mRNA sequence
Length = 632
Score = 46.1 bits (23), Expect = 0.003
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 77 tacctgggccggccgtggaaggagttc 103
||||||||| |||||||||||||||||
Sbjct: 503 tacctgggcaggccgtggaaggagttc 477
>gb|BJ285920.1|BJ285920 BJ285920 Y. Ogihara unpublished cDNA library, Wh_r Triticum
aestivum cDNA clone whr13h13 3', mRNA sequence
Length = 697
Score = 46.1 bits (23), Expect = 0.003
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 77 tacctgggccggccgtggaaggagttc 103
||||||||| |||||||||||||||||
Sbjct: 531 tacctgggcaggccgtggaaggagttc 505
>gb|BE606718.1|BE606718 WHE0907_G06_N11ZS Wheat 5-15 DAP spike cDNA library Triticum
aestivum cDNA clone WHE0907_G06_N11, mRNA sequence
Length = 479
Score = 42.1 bits (21), Expect = 0.041
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 77 tacctgggccggccgtggaag 97
|||||||||||||||||||||
Sbjct: 348 tacctgggccggccgtggaag 368
>gb|BJ280628.1|BJ280628 BJ280628 Y. Ogihara unpublished cDNA library, Wh_r Triticum
aestivum cDNA clone whr9f01 5', mRNA sequence
Length = 556
Score = 42.1 bits (21), Expect = 0.041
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 31 cagcagcagcaacagcaacaa 51
|||||||||||||||||||||
Sbjct: 82 cagcagcagcaacagcaacaa 102
>gb|BQ237503.1|BQ237503 TaE05016A10F TaE05 Triticum aestivum cDNA clone TaE05016A10F, mRNA
sequence
Length = 534
Score = 42.1 bits (21), Expect = 0.041
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 31 cagcagcagcaacagcaacaa 51
|||||||||||||||||||||
Sbjct: 466 cagcagcagcaacagcaacaa 446
>gb|BQ246691.1|BQ246691 TaE15006H08R TaE15 Triticum aestivum cDNA clone TaE15006H08R, mRNA
sequence
Length = 680
Score = 42.1 bits (21), Expect = 0.041
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 31 cagcagcagcaacagcaacaa 51
|||||||||||||||||||||
Sbjct: 388 cagcagcagcaacagcaacaa 408
>gb|BQ246778.1|BQ246778 TaE15005F05R TaE15 Triticum aestivum cDNA clone TaE15005F05R, mRNA
sequence
Length = 517
Score = 42.1 bits (21), Expect = 0.041
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 31 cagcagcagcaacagcaacaa 51
|||||||||||||||||||||
Sbjct: 346 cagcagcagcaacagcaacaa 366
>gb|BQ619661.1|BQ619661 TaLr1175D01F TaLr1 Triticum aestivum cDNA clone TaLr1175D01F, mRNA
sequence
Length = 677
Score = 42.1 bits (21), Expect = 0.041
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 31 cagcagcagcaacagcaacaa 51
|||||||||||||||||||||
Sbjct: 457 cagcagcagcaacagcaacaa 437
>gb|AL822808.1|AL822808 AL822808 p:335 Triticum aestivum cDNA clone G09_p335_plate_2, mRNA
sequence
Length = 466
Score = 42.1 bits (21), Expect = 0.041
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 31 cagcagcagcaacagcaacaa 51
|||||||||||||||||||||
Sbjct: 298 cagcagcagcaacagcaacaa 318
>gb|BQ838628.1|BQ838628 WHE2912_H01_P02ZS Wheat aluminum-stressed root tip cDNA library
Triticum aestivum cDNA clone WHE2912_H01_P02, mRNA
sequence
Length = 599
Score = 42.1 bits (21), Expect = 0.041
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 31 cagcagcagcaacagcaacaa 51
|||||||||||||||||||||
Sbjct: 308 cagcagcagcaacagcaacaa 328
>gb|CA631313.1|CA631313 wle1n.pk0041.g7 wle1n Triticum aestivum cDNA clone wle1n.pk0041.g7
5' end, mRNA sequence
Length = 632
Score = 42.1 bits (21), Expect = 0.041
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 31 cagcagcagcaacagcaacaa 51
|||||||||||||||||||||
Sbjct: 492 cagcagcagcaacagcaacaa 512
>gb|CA654086.1|CA654086 wre1n.pk161.f7 wre1n Triticum aestivum cDNA clone wre1n.pk161.f7
5' end, mRNA sequence
Length = 491
Score = 42.1 bits (21), Expect = 0.041
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 31 cagcagcagcaacagcaacaa 51
|||||||||||||||||||||
Sbjct: 74 cagcagcagcaacagcaacaa 94
>gb|CA654119.1|CA654119 wre1n.pk161.e7 wre1n Triticum aestivum cDNA clone wre1n.pk161.e7
5' end, mRNA sequence
Length = 492
Score = 42.1 bits (21), Expect = 0.041
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 31 cagcagcagcaacagcaacaa 51
|||||||||||||||||||||
Sbjct: 74 cagcagcagcaacagcaacaa 94
>gb|CD863937.1|CD863937 AZO1.108J15F010131 AZO1 Triticum aestivum cDNA clone AZO1108J15,
mRNA sequence
Length = 698
Score = 42.1 bits (21), Expect = 0.041
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 31 cagcagcagcaacagcaacaa 51
|||||||||||||||||||||
Sbjct: 419 cagcagcagcaacagcaacaa 439
>gb|CD863938.1|CD863938 AZO1.108J15R010507 AZO1 Triticum aestivum cDNA clone AZO1108J15,
mRNA sequence
Length = 634
Score = 42.1 bits (21), Expect = 0.041
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 31 cagcagcagcaacagcaacaa 51
|||||||||||||||||||||
Sbjct: 485 cagcagcagcaacagcaacaa 465
>gb|CK209225.1|CK209225 FGAS020979 Triticum aestivum FGAS: Library 5 GATE 7 Triticum
aestivum cDNA, mRNA sequence
Length = 1163
Score = 42.1 bits (21), Expect = 0.041
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 31 cagcagcagcaacagcaacaa 51
|||||||||||||||||||||
Sbjct: 884 cagcagcagcaacagcaacaa 864
>gb|CV777756.1|CV777756 FGAS072163 Triticum aestivum FGAS: Library 2 Gate 3 Triticum
aestivum cDNA, mRNA sequence
Length = 819
Score = 42.1 bits (21), Expect = 0.041
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 77 tacctgggccggccgtggaag 97
|||||||||||||||||||||
Sbjct: 688 tacctgggccggccgtggaag 668
>gb|AY453155.1| Triticum aestivum low molecular weight glutenin (Glu-A3) gene,
Glu-A3-b allele, complete cds
Length = 1187
Score = 42.1 bits (21), Expect = 0.041
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 31 cagcagcagcaacagcaacaa 51
|||||||||||||||||||||
Sbjct: 472 cagcagcagcaacagcaacaa 492
>gb|BJ254306.1|BJ254306 BJ254306 Y. Ogihara unpublished cDNA library, Wh_f Triticum
aestivum cDNA clone whf5d01 3', mRNA sequence
Length = 516
Score = 40.1 bits (20), Expect = 0.16
Identities = 41/48 (85%)
Strand = Plus / Minus
Query: 77 tacctgggccggccgtggaaggagttcgcgaggacggtggtgatggag 124
||||| || |||||||||||||| | | ||||||||||| | ||||||
Sbjct: 492 tacctcggacggccgtggaaggaatactcgaggacggtgatcatggag 445
>gb|BJ254574.1|BJ254574 BJ254574 Y. Ogihara unpublished cDNA library, Wh_f Triticum
aestivum cDNA clone whf6d01 3', mRNA sequence
Length = 644
Score = 40.1 bits (20), Expect = 0.16
Identities = 41/48 (85%)
Strand = Plus / Minus
Query: 77 tacctgggccggccgtggaaggagttcgcgaggacggtggtgatggag 124
||||| || |||||||||||||| | | ||||||||||| | ||||||
Sbjct: 483 tacctcggacggccgtggaaggaatactcgaggacggtgatcatggag 436
>gb|CA593973.1|CA593973 wpa1c.pk004.c19 wpa1c Triticum aestivum cDNA clone wpa1c.pk004.c19
5' end, mRNA sequence
Length = 534
Score = 40.1 bits (20), Expect = 0.16
Identities = 41/48 (85%)
Strand = Plus / Plus
Query: 77 tacctgggccggccgtggaaggagttcgcgaggacggtggtgatggag 124
||||| || |||||||||||||| | | ||||||||||| | ||||||
Sbjct: 333 tacctcggacggccgtggaaggaatactcgaggacggtgatcatggag 380
>gb|CA614639.1|CA614639 wr1.pk184.h1 wr1 Triticum aestivum cDNA clone wr1.pk184.h1 5' end,
mRNA sequence
Length = 531
Score = 40.1 bits (20), Expect = 0.16
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 33 gcagcagcaacagcaacaag 52
||||||||||||||||||||
Sbjct: 364 gcagcagcaacagcaacaag 383
>gb|CA618135.1|CA618135 wl1n.pk0030.h5 wl1n Triticum aestivum cDNA clone wl1n.pk0030.h5 5'
end, mRNA sequence
Length = 571
Score = 40.1 bits (20), Expect = 0.16
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 31 cagcagcagcaacagcaaca 50
||||||||||||||||||||
Sbjct: 289 cagcagcagcaacagcaaca 308
>gb|CA650212.1|CA650212 wre1n.pk0151.h8 wre1n Triticum aestivum cDNA clone wre1n.pk0151.h8
5' end, mRNA sequence
Length = 505
Score = 40.1 bits (20), Expect = 0.16
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 31 cagcagcagcaacagcaaca 50
||||||||||||||||||||
Sbjct: 430 cagcagcagcaacagcaaca 449
>gb|CK205310.1|CK205310 FGAS016780 Triticum aestivum FGAS: Library 5 GATE 7 Triticum
aestivum cDNA, mRNA sequence
Length = 997
Score = 40.1 bits (20), Expect = 0.16
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 31 cagcagcagcaacagcaacaagtc 54
||||||||||| ||||||||||||
Sbjct: 664 cagcagcagcagcagcaacaagtc 641
>gb|CK208585.1|CK208585 FGAS020299 Triticum aestivum FGAS: Library 5 GATE 7 Triticum
aestivum cDNA, mRNA sequence
Length = 1147
Score = 40.1 bits (20), Expect = 0.16
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 32 agcagcagcaacagcaacaa 51
||||||||||||||||||||
Sbjct: 34 agcagcagcaacagcaacaa 15
>gb|CF569196.1|CF569196 EST057 Subtracted, Clontech (cat. # K1804-1) Triticum aestivum cDNA
clone FDC57 5', mRNA sequence
Length = 581
Score = 40.1 bits (20), Expect = 0.16
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 31 cagcagcagcaacagcaaca 50
||||||||||||||||||||
Sbjct: 440 cagcagcagcaacagcaaca 459
Score = 40.1 bits (20), Expect = 0.16
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 31 cagcagcagcaacagcaaca 50
||||||||||||||||||||
Sbjct: 299 cagcagcagcaacagcaaca 318
Database: Triticum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 3:01 PM
Number of letters in database: 367,240,239
Number of sequences in database: 636,343
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 185,338
Number of Sequences: 636343
Number of extensions: 185338
Number of successful extensions: 68197
Number of sequences better than 0.5: 38
Number of HSP's better than 0.5 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 68088
Number of HSP's gapped (non-prelim): 107
length of query: 571
length of database: 367,240,239
effective HSP length: 19
effective length of query: 552
effective length of database: 355,149,722
effective search space: 196042646544
effective search space used: 196042646544
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)