BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3276099.2.1
(545 letters)
Database: Triticum_nucl_with_EST.fasta
636,343 sequences; 367,240,239 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CD491179.1|CD491179 WHE3080_D08_G16ZT CS wheat cold-stre... 527 e-148
gb|BJ259755.1|BJ259755 BJ259755 Y. Ogihara unpublished cDNA... 218 3e-055
gb|BJ265476.1|BJ265476 BJ265476 Y. Ogihara unpublished cDNA... 218 3e-055
gb|CK163661.1|CK163661 FGAS016291 Triticum aestivum FGAS: L... 218 3e-055
gb|CK206810.1|CK206810 FGAS018418 Triticum aestivum FGAS: L... 218 3e-055
gb|CV769212.1|CV769212 FGAS063603 Triticum aestivum FGAS: L... 218 3e-055
gb|CK163662.1|CK163662 FGAS016292 Triticum aestivum FGAS: L... 208 3e-052
gb|BJ290940.1|BJ290940 BJ290940 Y. Ogihara unpublished cDNA... 172 2e-041
gb|BJ297561.1|BJ297561 BJ297561 Y. Ogihara unpublished cDNA... 172 2e-041
gb|BQ579653.1|BQ579653 WHE2973_A08_B15ZS Wheat dormant embr... 172 2e-041
gb|CD919597.1|CD919597 G608.113O12F010911 G608 Triticum aes... 172 2e-041
gb|CK208501.1|CK208501 FGAS020215 Triticum aestivum FGAS: L... 157 1e-036
gb|CV775881.1|CV775881 FGAS070285 Triticum aestivum FGAS: L... 133 1e-029
gb|CA681991.1|CA681991 wlm24.pk0030.d5 wlm24 Triticum aesti... 103 1e-020
gb|CK197076.1|CK197076 FGAS005547 Triticum aestivum FGAS: L... 82 5e-014
gb|CA688173.1|CA688173 wlm96.pk039.c14 wlm96 Triticum aesti... 80 2e-013
gb|CD877106.1|CD877106 AZO3.111O23R011127 AZO3 Triticum aes... 64 1e-008
gb|CA738651.1|CA738651 wpi2s.pk002.a11 wpi2s Triticum aesti... 50 2e-004
gb|CA739153.1|CA739153 wpi2s.pk009.j11 wpi2s Triticum aesti... 50 2e-004
gb|BE446758.1|BE446758 WHE1140_F12_L24ZS Wheat etiolated se... 44 0.010
gb|CK206804.1|CK206804 FGAS018412 Triticum aestivum FGAS: L... 44 0.010
>gb|CD491179.1|CD491179 WHE3080_D08_G16ZT CS wheat cold-stressed seedling subtracted cDNA
library Triticum aestivum cDNA clone WHE3080_D08_G16,
mRNA sequence
Length = 765
Score = 527 bits (266), Expect = e-148
Identities = 305/318 (95%)
Strand = Plus / Minus
Query: 1 actttgacaatggaagcggagaaggcattgatcggtcgcattttcaggcgttggttcatt 60
||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 746 actttgaaaatggaagcggagaaggcattgatcggtcgcattttcaggcattggttcatt 687
Query: 61 tctacgggtgcaagcttcaggttcaagaaaggatgacaaggcagatagctgaagcggttt 120
|||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 686 tctatgggtgcaagcttcaggttcaagaaaggatgacaaggcagatagctgaagcagttt 627
Query: 121 attcggtttcgcacaatggggccatggtcgttgttgaggccaaccacatttgcatgatct 180
|||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 attcagtttcacacaatggggccatggtcgttgttgaggccaaccacatttgcatgatct 567
Query: 181 caagggggatagagaaaataaggagcaacacggcaacaattgcagttttgggccagtttt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 caagggggatagagaaaataaggagcaacacggcaacaattgcagttttgggccagtttt 507
Query: 241 tggccgacccttctgccaaggcgtgcttcttacagaatgttttggattctgttggttctg 300
|| ||||||||||||||||||| |||||||||||||||||||||||| | | ||||||||
Sbjct: 506 tgaccgacccttctgccaaggcatgcttcttacagaatgttttggatacagctggttctg 447
Query: 301 cggtatgaatcgtatcgc 318
|| ||||||| |||||||
Sbjct: 446 cgatatgaatggtatcgc 429
Score = 157 bits (79), Expect = 1e-036
Identities = 134/149 (89%), Gaps = 5/149 (3%)
Strand = Plus / Minus
Query: 399 tcttctcgggtgcaaatttgtcacctgtgggactgtaccgaggatgtcacaagaaagcac 458
|||||||||||||||| || ||||||| ||||||||||||||||||| ||||||||||
Sbjct: 326 tcttctcgggtgcaaaattttcacctggaagactgtaccgaggatgtcagaagaaagcac 267
Query: 459 caaaagggttttggttctctcgtgttgt---accatgtcacttgtaaggcacttc-aaat 514
||| ||||||||||||||||||| |||| ||||||||||||||| |||||||| ||||
Sbjct: 266 caacagggttttggttctctcgtcttgtaccaccatgtcacttgtacggcacttcaaaat 207
Query: 515 aaaaaagaaatagtaatagttacaactgt 543
||||||| ||||||| |||||||||||||
Sbjct: 206 aaaaaag-aatagtagtagttacaactgt 179
Score = 42.1 bits (21), Expect = 0.039
Identities = 42/49 (85%)
Strand = Plus / Minus
Query: 351 tactatccagcaattgaaatttttagcaatctactggtctagcatgatt 399
|||||||||||||| | ||| | | ||||||||||| |||||||||||
Sbjct: 398 tactatccagcaatggcaatgtctgccaatctactggcctagcatgatt 350
>gb|BJ259755.1|BJ259755 BJ259755 Y. Ogihara unpublished cDNA library, Wh_h Triticum
aestivum cDNA clone whh22b12 5', mRNA sequence
Length = 633
Score = 218 bits (110), Expect = 3e-055
Identities = 206/238 (86%)
Strand = Plus / Plus
Query: 39 cattttcaggcgttggttcatttctacgggtgcaagcttcaggttcaagaaaggatgaca 98
||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 39 cattttcaggctctggttcatttctacgggtgcaagcttcaggttcaggaaaggatgaca 98
Query: 99 aggcagatagctgaagcggtttattcggtttcgcacaatggggccatggtcgttgttgag 158
|| |||||||||||||| |||||||| || || ||| ||| ||||| || ||||| ||
Sbjct: 99 agacagatagctgaagcagtttattccgtctcacaccgtggagccatagttgttgtggaa 158
Query: 159 gccaaccacatttgcatgatctcaagggggatagagaaaataaggagcaacacggcaaca 218
||||||||||| |||||||| |||||||||||||||||||| ||||| | || || ||
Sbjct: 159 gccaaccacatctgcatgatatcaagggggatagagaaaatcaggagtagtacagcgacg 218
Query: 219 attgcagttttgggccagtttttggccgacccttctgccaaggcgtgcttcttacaga 276
|||||||||||||| ||||||| | |||| ||||||||||||| | ||| |||||||
Sbjct: 219 attgcagttttgggtcagttttcgaccgattcttctgccaaggcatcctttttacaga 276
Score = 44.1 bits (22), Expect = 0.010
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 466 gttttggttctctcgtgttgtaccat 491
|||||||||||| |||||||||||||
Sbjct: 533 gttttggttctcccgtgttgtaccat 558
>gb|BJ265476.1|BJ265476 BJ265476 Y. Ogihara unpublished cDNA library, Wh_h Triticum
aestivum cDNA clone whh22b12 3', mRNA sequence
Length = 640
Score = 218 bits (110), Expect = 3e-055
Identities = 206/238 (86%)
Strand = Plus / Minus
Query: 39 cattttcaggcgttggttcatttctacgggtgcaagcttcaggttcaagaaaggatgaca 98
||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 601 cattttcaggctctggttcatttctacgggtgcaagcttcaggttcaggaaaggatgaca 542
Query: 99 aggcagatagctgaagcggtttattcggtttcgcacaatggggccatggtcgttgttgag 158
|| |||||||||||||| |||||||| || || ||| ||| ||||| || ||||| ||
Sbjct: 541 agacagatagctgaagcagtttattccgtctcacaccgtggagccatagttgttgtggaa 482
Query: 159 gccaaccacatttgcatgatctcaagggggatagagaaaataaggagcaacacggcaaca 218
||||||||||| |||||||| |||||||||||||||||||| ||||| | || || ||
Sbjct: 481 gccaaccacatctgcatgatatcaagggggatagagaaaatcaggagtagtacagcgacg 422
Query: 219 attgcagttttgggccagtttttggccgacccttctgccaaggcgtgcttcttacaga 276
|||||||||||||| ||||||| | |||| ||||||||||||| | ||| |||||||
Sbjct: 421 attgcagttttgggtcagttttcgaccgattcttctgccaaggcatcctttttacaga 364
Score = 44.1 bits (22), Expect = 0.010
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 466 gttttggttctctcgtgttgtaccat 491
|||||||||||| |||||||||||||
Sbjct: 107 gttttggttctcccgtgttgtaccat 82
>gb|CK163661.1|CK163661 FGAS016291 Triticum aestivum FGAS: Library 4 Gate 8 Triticum
aestivum cDNA, mRNA sequence
Length = 1086
Score = 218 bits (110), Expect = 3e-055
Identities = 206/238 (86%)
Strand = Plus / Plus
Query: 39 cattttcaggcgttggttcatttctacgggtgcaagcttcaggttcaagaaaggatgaca 98
||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 274 cattttcaggctctggttcatttctacgggtgcaagcttcaggttcaggaaaggatgaca 333
Query: 99 aggcagatagctgaagcggtttattcggtttcgcacaatggggccatggtcgttgttgag 158
|| |||||||||||||| |||||||| || || ||| ||| ||||| || ||||| ||
Sbjct: 334 agacagatagctgaagcagtttattccgtctcacaccgtggagccatagttgttgtggaa 393
Query: 159 gccaaccacatttgcatgatctcaagggggatagagaaaataaggagcaacacggcaaca 218
||||||||||| |||||||| |||||||||||||||||||| ||||| | || || ||
Sbjct: 394 gccaaccacatctgcatgatatcaagggggatagagaaaatcaggagtagtacagcgacg 453
Query: 219 attgcagttttgggccagtttttggccgacccttctgccaaggcgtgcttcttacaga 276
|||||||||||||| ||||||| | |||| ||||||||||||| | ||| |||||||
Sbjct: 454 attgcagttttgggtcagttttcgaccgattcttctgccaaggcatcctttttacaga 511
Score = 44.1 bits (22), Expect = 0.010
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 466 gttttggttctctcgtgttgtaccat 491
|||||||||||| |||||||||||||
Sbjct: 768 gttttggttctcccgtgttgtaccat 793
>gb|CK206810.1|CK206810 FGAS018418 Triticum aestivum FGAS: Library 5 GATE 7 Triticum
aestivum cDNA, mRNA sequence
Length = 1031
Score = 218 bits (110), Expect = 3e-055
Identities = 206/238 (86%)
Strand = Plus / Plus
Query: 39 cattttcaggcgttggttcatttctacgggtgcaagcttcaggttcaagaaaggatgaca 98
||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 383 cattttcaggctctggttcatttctacgggtgcaagcttcaggttcaggaaaggatgaca 442
Query: 99 aggcagatagctgaagcggtttattcggtttcgcacaatggggccatggtcgttgttgag 158
|| |||||||||||||| |||||||| || || ||| ||| ||||| || ||||| ||
Sbjct: 443 agacagatagctgaagcagtttattccgtctcacaccgtggagccatagttgttgtggaa 502
Query: 159 gccaaccacatttgcatgatctcaagggggatagagaaaataaggagcaacacggcaaca 218
||||||||||| |||||||| |||||||||||||||||||| ||||| | || || ||
Sbjct: 503 gccaaccacatctgcatgatatcaagggggatagagaaaatcaggagtagtacagcgacg 562
Query: 219 attgcagttttgggccagtttttggccgacccttctgccaaggcgtgcttcttacaga 276
|||||||||||||| ||||||| | |||| ||||||||||||| | ||| |||||||
Sbjct: 563 attgcagttttgggtcagttttcgaccgattcttctgccaaggcatcctttttacaga 620
>gb|CV769212.1|CV769212 FGAS063603 Triticum aestivum FGAS: Library 2 Gate 3 Triticum
aestivum cDNA, mRNA sequence
Length = 857
Score = 218 bits (110), Expect = 3e-055
Identities = 206/238 (86%)
Strand = Plus / Plus
Query: 39 cattttcaggcgttggttcatttctacgggtgcaagcttcaggttcaagaaaggatgaca 98
||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 337 cattttcaggctctggttcatttctacgggtgcaagcttcaggttcaggaaaggatgaca 396
Query: 99 aggcagatagctgaagcggtttattcggtttcgcacaatggggccatggtcgttgttgag 158
|| |||||||||||||| |||||||| || || ||| ||| ||||| || ||||| ||
Sbjct: 397 agacagatagctgaagcagtttattccgtctcacaccgtggagccatagttgttgtggaa 456
Query: 159 gccaaccacatttgcatgatctcaagggggatagagaaaataaggagcaacacggcaaca 218
||||||||||| |||||||| |||||||||||||||||||| ||||| | || || ||
Sbjct: 457 gccaaccacatctgcatgatatcaagggggatagagaaaatcaggagtagtacagcgacg 516
Query: 219 attgcagttttgggccagtttttggccgacccttctgccaaggcgtgcttcttacaga 276
|||||||||||||| ||||||| | |||| ||||||||||||| | ||| |||||||
Sbjct: 517 attgcagttttgggtcagttttcgaccgattcttctgccaaggcatcctttttacaga 574
>gb|CK163662.1|CK163662 FGAS016292 Triticum aestivum FGAS: Library 4 Gate 8 Triticum
aestivum cDNA, mRNA sequence
Length = 1067
Score = 208 bits (105), Expect = 3e-052
Identities = 195/225 (86%)
Strand = Plus / Plus
Query: 52 tggttcatttctacgggtgcaagcttcaggttcaagaaaggatgacaaggcagatagctg 111
|||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct: 292 tggttcatttctacgggtgcaagcttcaggttcaggaaaggatgacaagacagatagctg 351
Query: 112 aagcggtttattcggtttcgcacaatggggccatggtcgttgttgaggccaaccacattt 171
|||| |||||||| || || ||| ||| ||||| || ||||| || ||||||||||| |
Sbjct: 352 aagcagtttattccgtctcacaccgtggagccatagttgttgtggaagccaaccacatct 411
Query: 172 gcatgatctcaagggggatagagaaaataaggagcaacacggcaacaattgcagttttgg 231
||||||| |||||||||||||||||||| ||||| | || || || |||||||||||||
Sbjct: 412 gcatgatatcaagggggatagagaaaatcaggagtagtacagcgacgattgcagttttgg 471
Query: 232 gccagtttttggccgacccttctgccaaggcgtgcttcttacaga 276
| ||||||| | |||| ||||||||||||| | ||| |||||||
Sbjct: 472 gtcagttttcgaccgattcttctgccaaggcatcctttttacaga 516
Score = 44.1 bits (22), Expect = 0.010
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 466 gttttggttctctcgtgttgtaccat 491
|||||||||||| |||||||||||||
Sbjct: 773 gttttggttctcccgtgttgtaccat 798
>gb|BJ290940.1|BJ290940 BJ290940 Y. Ogihara unpublished cDNA library, Wh_SL Triticum
aestivum cDNA clone whsl20o08 5', mRNA sequence
Length = 601
Score = 172 bits (87), Expect = 2e-041
Identities = 201/239 (84%)
Strand = Plus / Plus
Query: 39 cattttcaggcgttggttcatttctacgggtgcaagcttcaggttcaagaaaggatgaca 98
||||||||||| ||||||||||||| ||||||||||||||||| || ||||||||||||
Sbjct: 126 cattttcaggctctggttcatttctatgggtgcaagcttcaggtccaggaaaggatgaca 185
Query: 99 aggcagatagctgaagcggtttattcggtttcgcacaatggggccatggtcgttgttgag 158
|| |||||||||||||| |||||||| || || || ||| ||||| || ||||| ||
Sbjct: 186 agacagatagctgaagcagtttattcagtctcacatcgtggagccatagttgttgtagaa 245
Query: 159 gccaaccacatttgcatgatctcaagggggatagagaaaataaggagcaacacggcaaca 218
|| ||||| || |||||||| |||||||||||||||||||| || || | || ||||||
Sbjct: 246 gcaaaccatatctgcatgatatcaagggggatagagaaaatcagaagtagtacagcaaca 305
Query: 219 attgcagttttgggccagtttttggccgacccttctgccaaggcgtgcttcttacagaa 277
||||||||||||| ||||||| | |||| |||||||||||| | ||| ||||||||
Sbjct: 306 gttgcagttttgggtcagttttcgaccgatttttctgccaaggcatcctttttacagaa 364
>gb|BJ297561.1|BJ297561 BJ297561 Y. Ogihara unpublished cDNA library, Wh_SL Triticum
aestivum cDNA clone whsl20o08 3', mRNA sequence
Length = 659
Score = 172 bits (87), Expect = 2e-041
Identities = 201/239 (84%)
Strand = Plus / Minus
Query: 39 cattttcaggcgttggttcatttctacgggtgcaagcttcaggttcaagaaaggatgaca 98
||||||||||| ||||||||||||| ||||||||||||||||| || ||||||||||||
Sbjct: 629 cattttcaggctctggttcatttctatgggtgcaagcttcaggtccaggaaaggatgaca 570
Query: 99 aggcagatagctgaagcggtttattcggtttcgcacaatggggccatggtcgttgttgag 158
|| |||||||||||||| |||||||| || || || ||| ||||| || ||||| ||
Sbjct: 569 agacagatagctgaagcagtttattcagtctcacatcgtggagccatagttgttgtagaa 510
Query: 159 gccaaccacatttgcatgatctcaagggggatagagaaaataaggagcaacacggcaaca 218
|| ||||| || |||||||| |||||||||||||||||||| || || | || ||||||
Sbjct: 509 gcaaaccatatctgcatgatatcaagggggatagagaaaatcagaagtagtacagcaaca 450
Query: 219 attgcagttttgggccagtttttggccgacccttctgccaaggcgtgcttcttacagaa 277
||||||||||||| ||||||| | |||| |||||||||||| | ||| ||||||||
Sbjct: 449 gttgcagttttgggtcagttttcgaccgatttttctgccaaggcatcctttttacagaa 391
>gb|BQ579653.1|BQ579653 WHE2973_A08_B15ZS Wheat dormant embryo cDNA library Triticum
aestivum cDNA clone WHE2973_A08_B15, mRNA sequence
Length = 682
Score = 172 bits (87), Expect = 2e-041
Identities = 201/239 (84%)
Strand = Plus / Plus
Query: 39 cattttcaggcgttggttcatttctacgggtgcaagcttcaggttcaagaaaggatgaca 98
||||||||||| ||||||||||||| ||||||||||||||||| || ||||||||||||
Sbjct: 207 cattttcaggctctggttcatttctatgggtgcaagcttcaggtccaggaaaggatgaca 266
Query: 99 aggcagatagctgaagcggtttattcggtttcgcacaatggggccatggtcgttgttgag 158
|| |||||||||||||| |||||||| || || || ||| ||||| || ||||| ||
Sbjct: 267 agacagatagctgaagcagtttattcagtctcacatcgtggagccatagttgttgtagaa 326
Query: 159 gccaaccacatttgcatgatctcaagggggatagagaaaataaggagcaacacggcaaca 218
|| ||||| || |||||||| |||||||||||||||||||| || || | || ||||||
Sbjct: 327 gcaaaccatatctgcatgatatcaagggggatagagaaaatcagaagtagtacagcaaca 386
Query: 219 attgcagttttgggccagtttttggccgacccttctgccaaggcgtgcttcttacagaa 277
||||||||||||| ||||||| | |||| |||||||||||| | ||| ||||||||
Sbjct: 387 gttgcagttttgggtcagttttcgaccgatttttctgccaaggcatcctttttacagaa 445
>gb|CD919597.1|CD919597 G608.113O12F010911 G608 Triticum aestivum cDNA clone G608113O12,
mRNA sequence
Length = 765
Score = 172 bits (87), Expect = 2e-041
Identities = 201/239 (84%)
Strand = Plus / Plus
Query: 39 cattttcaggcgttggttcatttctacgggtgcaagcttcaggttcaagaaaggatgaca 98
||||||||||| ||||||||||||| ||||||||||||||||| || ||||||||||||
Sbjct: 141 cattttcaggccctggttcatttctatgggtgcaagcttcaggtccaggaaaggatgaca 200
Query: 99 aggcagatagctgaagcggtttattcggtttcgcacaatggggccatggtcgttgttgag 158
|| |||||||||||||| |||||||| || ||||| ||| ||||| || ||||| ||
Sbjct: 201 agacagatagctgaagcagtttattcagtctcgcaacgtggagccatagttgttgtagaa 260
Query: 159 gccaaccacatttgcatgatctcaagggggatagagaaaataaggagcaacacggcaaca 218
|| ||||| || |||||||| |||||||||||||||||||| ||||| | || || ||
Sbjct: 261 gcaaaccatatctgcatgatatcaagggggatagagaaaatcaggagtagtacagcgacg 320
Query: 219 attgcagttttgggccagtttttggccgacccttctgccaaggcgtgcttcttacagaa 277
|||||||||||||| ||||| | | | || ||||||||||||| | ||| ||||||||
Sbjct: 321 attgcagttttgggtcagttctcgactgattcttctgccaaggcatcctttttacagaa 379
Score = 46.1 bits (23), Expect = 0.002
Identities = 36/39 (92%), Gaps = 1/39 (2%)
Strand = Plus / Plus
Query: 453 aagcaccaaaagggttttggttctctcgtgttgtaccat 491
||||||||||| | ||||||||||| |||||||||||||
Sbjct: 627 aagcaccaaaaag-ttttggttctcccgtgttgtaccat 664
>gb|CK208501.1|CK208501 FGAS020215 Triticum aestivum FGAS: Library 5 GATE 7 Triticum
aestivum cDNA, mRNA sequence
Length = 1161
Score = 157 bits (79), Expect = 1e-036
Identities = 199/239 (83%)
Strand = Plus / Plus
Query: 39 cattttcaggcgttggttcatttctacgggtgcaagcttcaggttcaagaaaggatgaca 98
|||||| |||| ||||||||||||| ||||||||||||||||| || |||||||||||
Sbjct: 48 catttttaggctctggttcatttctatgggtgcaagcttcaggtccaggaaaggatgacg 107
Query: 99 aggcagatagctgaagcggtttattcggtttcgcacaatggggccatggtcgttgttgag 158
|| |||||||||||||| |||||||| || || || ||| ||||| || ||||| ||
Sbjct: 108 agacagatagctgaagcagtttattcagtctcacatcgtggagccatagttgttgtagaa 167
Query: 159 gccaaccacatttgcatgatctcaagggggatagagaaaataaggagcaacacggcaaca 218
|| ||||| || |||||||| |||||||||||||||||||| || || | || ||||||
Sbjct: 168 gcaaaccatatctgcatgatatcaagggggatagagaaaatcagaagtagtacagcaaca 227
Query: 219 attgcagttttgggccagtttttggccgacccttctgccaaggcgtgcttcttacagaa 277
||||||||||||| ||||||| | |||| |||||||||||| | ||| ||||||||
Sbjct: 228 gttgcagttttgggtcagttttcgaccgatttttctgccaaggcatcctttttacagaa 286
>gb|CV775881.1|CV775881 FGAS070285 Triticum aestivum FGAS: Library 2 Gate 3 Triticum
aestivum cDNA, mRNA sequence
Length = 885
Score = 133 bits (67), Expect = 1e-029
Identities = 133/155 (85%)
Strand = Plus / Plus
Query: 39 cattttcaggcgttggttcatttctacgggtgcaagcttcaggttcaagaaaggatgaca 98
||||||||||| ||||||||||||| ||||||||||||||||| || ||||||||||||
Sbjct: 504 cattttcaggctctggttcatttctatgggtgcaagcttcaggtccaggaaaggatgaca 563
Query: 99 aggcagatagctgaagcggtttattcggtttcgcacaatggggccatggtcgttgttgag 158
|| |||||||||||||| |||||||| || || || ||| ||||| || ||||| ||
Sbjct: 564 agacagatagctgaagcagtttattcagtctcacatcgtggagccatagttgttgtagaa 623
Query: 159 gccaaccacatttgcatgatctcaagggggataga 193
|| ||||| || |||||||| ||||||||||||||
Sbjct: 624 gcaaaccatatctgcatgatatcaagggggataga 658
>gb|CA681991.1|CA681991 wlm24.pk0030.d5 wlm24 Triticum aestivum cDNA clone wlm24.pk0030.d5
5' end, mRNA sequence
Length = 373
Score = 103 bits (52), Expect = 1e-020
Identities = 115/136 (84%)
Strand = Plus / Plus
Query: 141 gccatggtcgttgttgaggccaaccacatttgcatgatctcaagggggatagagaaaata 200
||||| || ||||| || ||||||||||| |||||||| ||||||||||||||||||||
Sbjct: 25 gccatagttgttgtggaagccaaccacatctgcatgatatcaagggggatagagaaaatc 84
Query: 201 aggagcaacacggcaacaattgcagttttgggccagtttttggccgacccttctgccaag 260
||||| | || || || |||||||||||||| ||||||| | |||| |||||||||||
Sbjct: 85 aggagtagtacagcgacgattgcagttttgggtcagttttcgaccgattcttctgccaag 144
Query: 261 gcgtgcttcttacaga 276
|| | ||| |||||||
Sbjct: 145 gcatcctttttacaga 160
>gb|CK197076.1|CK197076 FGAS005547 Triticum aestivum FGAS: Library 3 Gate 6 Triticum
aestivum cDNA, mRNA sequence
Length = 845
Score = 81.8 bits (41), Expect = 5e-014
Identities = 119/145 (82%)
Strand = Plus / Minus
Query: 88 aaaggatgacaaggcagatagctgaagcggtttattcggtttcgcacaatggggccatgg 147
||||||||||||| |||||||||||||| ||| |||| || || | ||| ||||| |
Sbjct: 728 aaaggatgacaagacagatagctgaagcagttaattccgtctcaaatcgtggagccatag 669
Query: 148 tcgttgttgaggccaaccacatttgcatgatctcaagggggatagagaaaataaggagca 207
| ||||| || || ||||| || |||||||| |||||||| ||||||||||| ||||| |
Sbjct: 668 ttgttgtagaagcaaaccatatctgcatgatatcaaggggaatagagaaaatcaggagta 609
Query: 208 acacggcaacaattgcagttttggg 232
|| || |||||||||||||||||
Sbjct: 608 gtacagccacaattgcagttttggg 584
Score = 40.1 bits (20), Expect = 0.15
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 468 tttggttctctcgtgttgtaccat 491
|||||||||| |||||||||||||
Sbjct: 269 tttggttctcccgtgttgtaccat 246
>gb|CA688173.1|CA688173 wlm96.pk039.c14 wlm96 Triticum aestivum cDNA clone wlm96.pk039.c14
5' end, mRNA sequence
Length = 239
Score = 79.8 bits (40), Expect = 2e-013
Identities = 140/171 (81%), Gaps = 2/171 (1%)
Strand = Plus / Plus
Query: 106 tagctgaagcggtttattcggtttcgcacaatggggccatggtcgttgttgaggccaacc 165
|||||||||| |||||||| || || ||| ||| ||||| || ||||| || ||| ||
Sbjct: 10 tagctgaagcagtttattccgtctcacaccgtggagccatagttgttgtggaagccn-cc 68
Query: 166 acatttgcatgatctcaagggggatagagaaaataaggagcaacacggcaacaattgcag 225
|||| |||||||| |||||||||||||||||||| ||||| | || || || |||| ||
Sbjct: 69 acatctgcatgatatcaagggggatagagaaaatcaggagtagtacagcgacgattg-ag 127
Query: 226 ttttgggccagtttttggccgacccttctgccaaggcgtgcttcttacaga 276
||||||| ||||||| | |||| ||||||||||||| | ||| |||||||
Sbjct: 128 ttttgggtcagttttcgaccgattcttctgccaaggcatcctttttacaga 178
>gb|CD877106.1|CD877106 AZO3.111O23R011127 AZO3 Triticum aestivum cDNA clone AZO3111O23,
mRNA sequence
Length = 528
Score = 63.9 bits (32), Expect = 1e-008
Identities = 83/100 (83%)
Strand = Plus / Minus
Query: 141 gccatggtcgttgttgaggccaaccacatttgcatgatctcaagggggatagagaaaata 200
||||| || ||||| || |||||||| || |||||||| || ||||| |||||||||||
Sbjct: 520 gccatagttgttgtagaagccaaccatatctgcatgatatccaggggaatagagaaaatc 461
Query: 201 aggagcaacacggcaacaattgcagttttgggccagtttt 240
|||| | || || ||||||||||||||||| |||||||
Sbjct: 460 tggagtagtacagccacaattgcagttttgggtcagtttt 421
Score = 44.1 bits (22), Expect = 0.010
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 466 gttttggttctctcgtgttgtaccat 491
|||||||||||| |||||||||||||
Sbjct: 124 gttttggttctcccgtgttgtaccat 99
>gb|CA738651.1|CA738651 wpi2s.pk002.a11 wpi2s Triticum aestivum cDNA clone wpi2s.pk002.a11
5' end, mRNA sequence
Length = 392
Score = 50.1 bits (25), Expect = 2e-004
Identities = 55/65 (84%)
Strand = Plus / Minus
Query: 213 gcaacaattgcagttttgggccagtttttggccgacccttctgccaaggcgtgcttctta 272
|||||| ||||||||||||| ||||||| | |||| |||||||||||| | ||| |||
Sbjct: 366 gcaacagttgcagttttgggtcagttttcgaccgatttttctgccaaggcatccttttta 307
Query: 273 cagaa 277
|||||
Sbjct: 306 cagaa 302
>gb|CA739153.1|CA739153 wpi2s.pk009.j11 wpi2s Triticum aestivum cDNA clone wpi2s.pk009.j11
5' end, mRNA sequence
Length = 392
Score = 50.1 bits (25), Expect = 2e-004
Identities = 55/65 (84%)
Strand = Plus / Minus
Query: 213 gcaacaattgcagttttgggccagtttttggccgacccttctgccaaggcgtgcttctta 272
|||||| ||||||||||||| ||||||| | |||| |||||||||||| | ||| |||
Sbjct: 366 gcaacagttgcagttttgggtcagttttcgaccgatttttctgccaaggcatccttttta 307
Query: 273 cagaa 277
|||||
Sbjct: 306 cagaa 302
>gb|BE446758.1|BE446758 WHE1140_F12_L24ZS Wheat etiolated seedling root normalized cDNA
library Triticum aestivum cDNA clone WHE1140_F12_L24,
mRNA sequence
Length = 497
Score = 44.1 bits (22), Expect = 0.010
Identities = 49/58 (84%)
Strand = Plus / Minus
Query: 219 attgcagttttgggccagtttttggccgacccttctgccaaggcgtgcttcttacaga 276
|||||||||||||| ||||||| | |||| ||| ||||||||| | ||| |||||||
Sbjct: 496 attgcagttttgggtcagttttcgaccgattcttttgccaaggcatcctttttacaga 439
>gb|CK206804.1|CK206804 FGAS018412 Triticum aestivum FGAS: Library 5 GATE 7 Triticum
aestivum cDNA, mRNA sequence
Length = 1029
Score = 44.1 bits (22), Expect = 0.010
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 466 gttttggttctctcgtgttgtaccat 491
|||||||||||| |||||||||||||
Sbjct: 95 gttttggttctcccgtgttgtaccat 120
Database: Triticum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 3:01 PM
Number of letters in database: 367,240,239
Number of sequences in database: 636,343
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 94,591
Number of Sequences: 636343
Number of extensions: 94591
Number of successful extensions: 24993
Number of sequences better than 0.5: 21
Number of HSP's better than 0.5 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 24945
Number of HSP's gapped (non-prelim): 37
length of query: 545
length of database: 367,240,239
effective HSP length: 19
effective length of query: 526
effective length of database: 355,149,722
effective search space: 186808753772
effective search space used: 186808753772
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)