BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3204486.2.1
(607 letters)
Database: Triticum_nucl_with_EST.fasta
636,343 sequences; 367,240,239 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|DR740841.1|DR740841 FGAS000775 Triticum aestivum FGAS: L... 357 6e-097
gb|CD884993.1|CD884993 F1.118I15F010510 F1 Triticum aestivu... 270 1e-070
gb|BG607368.1|BG607368 WHE2471_G05_M09ZS Triticum monococcu... 246 1e-063
gb|BG906609.1|BG906609 TaLr1151A12R TaLr1 Triticum aestivum... 206 1e-051
gb|DN829719.1|DN829719 KUCD01_05_A09_T3 WSWR cDNA library T... 206 1e-051
gb|BG907457.1|BG907457 TaLr1160B10F TaLr1 Triticum aestivum... 147 1e-033
gb|BQ168862.1|BQ168862 WHE2471_G05_M09ZT Triticum monococcu... 147 1e-033
gb|CV763676.1|CV763676 FGAS058059 Triticum aestivum FGAS: L... 125 4e-027
gb|BJ266454.1|BJ266454 BJ266454 Y. Ogihara unpublished cDNA... 109 2e-022
gb|CK151503.1|CK151503 FGAS034070 Triticum aestivum FGAS: T... 109 2e-022
gb|BE431020.1|BE431020 SUN010.D10F991222 ITEC SUN Wheat cDN... 101 5e-020
gb|BJ283923.1|BJ283923 BJ283923 Y. Ogihara unpublished cDNA... 101 5e-020
gb|BU100289.1|BU100289 WHE3351_E06_I11ZS Chinese Spring alu... 101 5e-020
gb|CD876503.1|CD876503 AZO3.110A08R011127 AZO3 Triticum aes... 101 5e-020
gb|BJ278042.1|BJ278042 BJ278042 Y. Ogihara unpublished cDNA... 90 2e-016
gb|BJ283102.1|BJ283102 BJ283102 Y. Ogihara unpublished cDNA... 90 2e-016
gb|CA652132.1|CA652132 wre1n.pk178.c9 wre1n Triticum aestiv... 88 8e-016
gb|BJ283653.1|BJ283653 BJ283653 Y. Ogihara unpublished cDNA... 86 3e-015
gb|BJ285652.1|BJ285652 BJ285652 Y. Ogihara unpublished cDNA... 86 3e-015
gb|CK163292.1|CK163292 FGAS015914 Triticum aestivum FGAS: L... 86 3e-015
gb|CA705246.1|CA705246 wdk1c.pk019.a7 wdk1c Triticum aestiv... 84 1e-014
gb|CA609734.1|CA609734 wr1.pk0111.h12 wr1 Triticum aestivum... 82 5e-014
gb|BE493457.1|BE493457 WHE0580_C12_C12ZE Triticum monococcu... 78 8e-013
gb|BQ802151.1|BQ802151 WHE2822_F07_K14ZS Triticum monococcu... 78 8e-013
gb|CV782498.1|CV782498 FGAS076911 Triticum aestivum FGAS: L... 74 1e-011
gb|BG908508.1|BG908508 TaLr1168H03F TaLr1 Triticum aestivum... 72 5e-011
gb|BG908617.1|BG908617 TaLr1169H03F TaLr1 Triticum aestivum... 72 5e-011
gb|CA688785.1|CA688785 wlm96.pk042.m24 wlm96 Triticum aesti... 72 5e-011
gb|CK209111.1|CK209111 FGAS020854 Triticum aestivum FGAS: L... 72 5e-011
emb|AX756336.1| Sequence 1075 from Patent WO03000905 72 5e-011
gb|BJ227054.1|BJ227054 BJ227054 Y. Ogihara unpublished cDNA... 70 2e-010
gb|BJ263562.1|BJ263562 BJ263562 Y. Ogihara unpublished cDNA... 70 2e-010
gb|AL829161.1|AL829161 AL829161 q:141 Triticum aestivum cDN... 70 2e-010
gb|CD869494.1|CD869494 AZO2.111M18R010402 AZO2 Triticum aes... 70 2e-010
gb|CD896229.1|CD896229 G174.102C22R011120 G174 Triticum aes... 70 2e-010
gb|CA662783.1|CA662783 wlmk1.pk0024.e7 wlmk1 Triticum aesti... 68 8e-010
gb|BQ236474.1|BQ236474 TaE05031C09F TaE05 Triticum aestivum... 66 3e-009
gb|BQ239500.1|BQ239500 TaE05030C01R TaE05 Triticum aestivum... 64 1e-008
gb|BJ245193.1|BJ245193 BJ245193 Y. Ogihara unpublished cDNA... 62 5e-008
gb|BQ171231.1|BQ171231 WHE2342_B04_C08ZT Wheat pre-anthesis... 62 5e-008
gb|CA601549.1|CA601549 wr1.pk0001.f8 wr1 Triticum aestivum ... 62 5e-008
gb|CA647534.1|CA647534 wre1n.pk0113.f8 wre1n Triticum aesti... 62 5e-008
gb|CA705486.1|CA705486 wdk1c.pk014.b8 wdk1c Triticum aestiv... 62 5e-008
gb|CD876680.1|CD876680 AZO3.110I14R011127 AZO3 Triticum aes... 62 5e-008
gb|CK210288.1|CK210288 FGAS022089 Triticum aestivum FGAS: L... 62 5e-008
gb|BQ905102.1|BQ905102 Ta04_13f10_R Ta04_AAFC_ECORC_Fusariu... 60 2e-007
gb|AJ610809.1|AJ610809 AJ610809 Triticum turgidum subsp. du... 60 2e-007
gb|CV772547.1|CV772547 FGAS066941 Triticum aestivum FGAS: L... 60 2e-007
gb|CV777855.1|CV777855 FGAS072262 Triticum aestivum FGAS: L... 60 2e-007
gb|CA617255.1|CA617255 wl1n.pk0014.d11 wl1n Triticum aestiv... 58 7e-007
gb|CA679604.1|CA679604 wlm4.pk0017.b10 wlm4 Triticum aestiv... 58 7e-007
gb|BQ789440.1|BQ789440 WHE4161_D07_H13ZS Wheat CS whole pla... 56 3e-006
gb|CA685873.1|CA685873 wlm96.pk031.m8 wlm96 Triticum aestiv... 56 3e-006
gb|CA697879.1|CA697879 wlk4.pk0020.e1 wlk4 Triticum aestivu... 56 3e-006
gb|BQ161927.1|BQ161927 WHE0485_f09_l17zT Wheat Fusarium gra... 54 1e-005
gb|CA641525.1|CA641525 wre1n.pk0046.f2 wre1n Triticum aesti... 54 1e-005
gb|CA685183.1|CA685183 wlm96.pk027.p16 wlm96 Triticum aesti... 54 1e-005
gb|CK207966.1|CK207966 FGAS019640 Triticum aestivum FGAS: L... 54 1e-005
gb|CV759639.1|CV759639 FGAS054023 Triticum aestivum FGAS: L... 54 1e-005
gb|CV767492.1|CV767492 FGAS061882 Triticum aestivum FGAS: L... 54 1e-005
gb|BT009242.1| Triticum aestivum clone wlk1.pk0013.f1:fis, ... 54 1e-005
gb|BJ251065.1|BJ251065 BJ251065 Y. Ogihara unpublished cDNA... 52 5e-005
gb|CD452914.1|CD452914 WHE1137_D01_G01ZT CS wheat etiolated... 52 5e-005
gb|BJ229268.1|BJ229268 BJ229268 Y. Ogihara unpublished cDNA... 50 2e-004
gb|CD873890.1|CD873890 AZO3.100O18F010925 AZO3 Triticum aes... 50 2e-004
gb|CD873891.1|CD873891 AZO3.100O18R011123 AZO3 Triticum aes... 50 2e-004
gb|AJ610273.1|AJ610273 AJ610273 Triticum turgidum subsp. du... 50 2e-004
gb|CN008254.1|CN008254 WHE2639_B02_D03ZE Wheat Fusarium gra... 50 2e-004
gb|CV774514.1|CV774514 FGAS068912 Triticum aestivum FGAS: L... 50 2e-004
gb|BQ161915.1|BQ161915 WHE0485_c07_f13zT Wheat Fusarium gra... 48 7e-004
gb|BQ171746.1|BQ171746 WHE1659-1662_G04_G04ZT Wheat heat st... 48 7e-004
gb|CK193040.1|CK193040 FGAS001451 Triticum aestivum FGAS: L... 48 7e-004
gb|BE497960.1|BE497960 WHE0958_C09_F18ZS Wheat pre-anthesis... 46 0.003
gb|BM134279.1|BM134279 WHE0488_A10_A20ZS Wheat Fusarium gra... 46 0.003
gb|BM134859.1|BM134859 WHE0452_G05_G05ZS Wheat Fusarium gra... 46 0.003
gb|BJ284821.1|BJ284821 BJ284821 Y. Ogihara unpublished cDNA... 46 0.003
gb|CA639007.1|CA639007 wre1n.pk0017.a8 wre1n Triticum aesti... 46 0.003
gb|CA643089.1|CA643089 wre1n.pk0071.b11 wre1n Triticum aest... 46 0.003
gb|CA690506.1|CA690506 wlm96.pk053.a8 wlm96 Triticum aestiv... 46 0.003
gb|CD863384.1|CD863384 AZO1.106J14R010507 AZO1 Triticum aes... 46 0.003
gb|CD873732.1|CD873732 AZO3.100I16R011123 AZO3 Triticum aes... 46 0.003
gb|CD900007.1|CD900007 G174.114D24R011120 G174 Triticum aes... 46 0.003
gb|BJ286023.1|BJ286023 BJ286023 Y. Ogihara unpublished cDNA... 44 0.011
gb|BQ804245.1|BQ804245 WHE3552_B09_C18ZS Wheat developing g... 44 0.011
gb|BE499791.1|BE499791 WHE0975_B09_C17ZS Wheat pre-anthesis... 42 0.044
gb|BJ245394.1|BJ245394 BJ245394 Y. Ogihara unpublished cDNA... 42 0.044
gb|BJ251275.1|BJ251275 BJ251275 Y. Ogihara unpublished cDNA... 42 0.044
gb|BJ284904.1|BJ284904 BJ284904 Y. Ogihara unpublished cDNA... 42 0.044
gb|BQ620093.1|BQ620093 TaLr1132F12F TaLr1 Triticum aestivum... 42 0.044
gb|BU100309.1|BU100309 WHE3351_G06_M11ZS Chinese Spring alu... 42 0.044
gb|CA637426.1|CA637426 wre1.pk0004.e1 wre1 Triticum aestivu... 42 0.044
gb|CA650685.1|CA650685 wre1n.pk0154.d8 wre1n Triticum aesti... 42 0.044
gb|CA650770.1|CA650770 wre1n.pk159.e4 wre1n Triticum aestiv... 42 0.044
gb|CA652838.1|CA652838 wre1n.pk194.d3 wre1n Triticum aestiv... 42 0.044
gb|CA688158.1|CA688158 wlm96.pk039.o7 wlm96 Triticum aestiv... 42 0.044
gb|CA736184.1|CA736184 wpi1s.pk006.n22 wpi1s Triticum aesti... 42 0.044
gb|CD881287.1|CD881287 F1.102J24F010328 F1 Triticum aestivu... 42 0.044
gb|CD881288.1|CD881288 F1.102J24R010702 F1 Triticum aestivu... 42 0.044
gb|CD884994.1|CD884994 F1.118I15R010628 F1 Triticum aestivu... 42 0.044
gb|AJ610726.1|AJ610726 AJ610726 Triticum turgidum subsp. du... 42 0.044
emb|AX660668.1| Sequence 1025 from Patent WO03000906 42 0.044
emb|AX756255.1| Sequence 994 from Patent WO03000905 42 0.044
gb|BE431001.1|BE431001 SUN010.B10F991222 ITEC SUN Wheat cDN... 40 0.17
gb|BM135914.1|BM135914 WHE2603_A08_B15ZS Wheat Fusarium gra... 40 0.17
gb|BJ285176.1|BJ285176 BJ285176 Y. Ogihara unpublished cDNA... 40 0.17
gb|BQ161994.1|BQ161994 WHE0489_F09_L17ZT Wheat Fusarium gra... 40 0.17
gb|BQ162653.1|BQ162653 WHE0446_D02_G04ZT Wheat etiolated se... 40 0.17
gb|BQ171418.1|BQ171418 WHE1787_B10_C19ZY Wheat pre-anthesis... 40 0.17
gb|BQ903558.1|BQ903558 Ta03_15g11_R Ta03_AAFC_ECORC_Fusariu... 40 0.17
gb|CD454167.1|CD454167 WHE0986_E11_J22ZT CS wheat pre-anthe... 40 0.17
gb|CK205721.1|CK205721 FGAS017253 Triticum aestivum FGAS: L... 40 0.17
gb|CK205852.1|CK205852 FGAS017400 Triticum aestivum FGAS: L... 40 0.17
gb|CN012944.1|CN012944 WHE3954_G12_N24ZS Wheat Fusarium gra... 40 0.17
>gb|DR740841.1|DR740841 FGAS000775 Triticum aestivum FGAS: Library 2 Gate 3 Triticum
aestivum cDNA, mRNA sequence
Length = 1091
Score = 357 bits (180), Expect = 6e-097
Identities = 340/391 (86%), Gaps = 2/391 (0%)
Strand = Plus / Plus
Query: 7 ccatcgcgcggcacggcctgtacggcgaggacgacatcgtgcccatctccatctgctggc 66
||||||||| || |||||| ||||| ||| ||||| |||||||||||||||||| |||||
Sbjct: 199 ccatcgcgcagcgcggcctctacggggagcacgacgtcgtgcccatctccatcttctggc 258
Query: 67 agataccgcagtacttcatcatcgggtgcgcggaggtgttcaccttcgtggggcagctgg 126
|| | |||||||||||||||||||| ||| |||||||||||||||||||| ||||| |
Sbjct: 259 aggtgccgcagtacttcatcatcggcgccgccgaggtgttcaccttcgtgggccagctcg 318
Query: 127 agttcttctacgaccaggcgcccgacgccatgaggagcatgtgctccgcgctgtcgctca 186
|||||||||||||||||||||||||||||||||||||||||||||||| ||| || ||||
Sbjct: 319 agttcttctacgaccaggcgcccgacgccatgaggagcatgtgctccgngctctccctca 378
Query: 187 ccaccgtcgcgctcggcaactacctcagcacggtcctggtgaccatcgtcacccacatca 246
|||||||||| ||||| ||||||||||||||| |||| || ||| |||| || | |||
Sbjct: 379 ccaccgtcgccctcgggaactacctcagcacgctcctcgtcaccgtcgtggccaagctca 438
Query: 247 ccaccaggcacggc-cgcatcgggtggatcccggagaacctcaaccgcggccacctcgac 305
|||||||| ||| ||| ||||||||||| || ||||||||| |||||||||||||
Sbjct: 439 ccaccaggggaggcaagca-agggtggatccccgacaacctcaacgtcggccacctcgac 497
Query: 306 tacttcttctggctgctcgccgtgctcagccttctcaacttccttgcctacctcgtcatc 365
|||||||||||||||||||||| |||||||| ||||||||| | ||||||| |||||
Sbjct: 498 tacttcttctggctgctcgccgccctcagcctcctcaacttcgccgtctacctcctcatc 557
Query: 366 gccagctggtacaagtacaagaagacggccg 396
||||||||||||| ||||||||||| ||||
Sbjct: 558 gccagctggtacacctacaagaagaccgccg 588
>gb|CD884993.1|CD884993 F1.118I15F010510 F1 Triticum aestivum cDNA clone F1118I15, mRNA
sequence
Length = 660
Score = 270 bits (136), Expect = 1e-070
Identities = 193/212 (91%)
Strand = Plus / Plus
Query: 7 ccatcgcgcggcacggcctgtacggcgaggacgacatcgtgcccatctccatctgctggc 66
||||||||| || |||||| ||||| ||| | ||| | |||||||||||||||| |||||
Sbjct: 166 ccatcgcgcagcgcggcctctacggggagaaggacgtggtgcccatctccatcttctggc 225
Query: 67 agataccgcagtacttcatcatcgggtgcgcggaggtgttcaccttcgtggggcagctgg 126
|| | |||||||||||||||||||| ||| |||||||||||||||||||| ||||| |
Sbjct: 226 aggtgccgcagtacttcatcatcggcgccgccgaggtgttcaccttcgtgggccagctcg 285
Query: 127 agttcttctacgaccaggcgcccgacgccatgaggagcatgtgctccgcgctgtcgctca 186
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 286 agttcttctacgaccaggcgcccgacgccatgaggagcatgtgctccgcgctctcgctca 345
Query: 187 ccaccgtcgcgctcggcaactacctcagcacg 218
|||||||||||||||| |||||||||||||||
Sbjct: 346 ccaccgtcgcgctcgggaactacctcagcacg 377
Score = 149 bits (75), Expect = 3e-034
Identities = 132/151 (87%)
Strand = Plus / Plus
Query: 267 gggtggatcccggagaacctcaaccgcggccacctcgactacttcttctggctgctcgcc 326
||||||||||| || ||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 426 gggtggatccccgacaacctcaacgtcggccacctcgactacttcttctggctgctcgcc 485
Query: 327 gtgctcagccttctcaacttccttgcctacctcgtcatcgccagctggtacaagtacaag 386
| ||||||||| ||||||||| | ||||||| |||||||||||||||||| ||||||
Sbjct: 486 gcgctcagcctcctcaacttcgccgtctacctcctcatcgccagctggtacacctacaag 545
Query: 387 aagacggccgatgattaccctggcgccaaag 417
||||| |||| ||| |||| | ||||||||
Sbjct: 546 aagaccgccggagatgacccggacgccaaag 576
>gb|BG607368.1|BG607368 WHE2471_G05_M09ZS Triticum monococcum early reproductive apex cDNA
library Triticum monococcum cDNA clone WHE2471_G05_M09,
mRNA sequence
Length = 541
Score = 246 bits (124), Expect = 1e-063
Identities = 190/212 (89%)
Strand = Plus / Plus
Query: 7 ccatcgcgcggcacggcctgtacggcgaggacgacatcgtgcccatctccatctgctggc 66
||||||||| || |||||| ||||||||| | ||| | |||||||||||||||| ||||
Sbjct: 257 ccatcgcgcagcgcggcctctacggcgagaaggacgtggtgcccatctccatcttttggc 316
Query: 67 agataccgcagtacttcatcatcgggtgcgcggaggtgttcaccttcgtggggcagctgg 126
|| | |||||||||||||||||||| ||| ||||| |||||||||||||| ||||| |
Sbjct: 317 aggtgccgcagtacttcatcatcggcgccgccgaggtcttcaccttcgtgggccagctcg 376
Query: 127 agttcttctacgaccaggcgcccgacgccatgaggagcatgtgctccgcgctgtcgctca 186
|||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct: 377 agttcttctacgaccaggcgcccgacgccatgaggagcatgtgctccgcgctctccctca 436
Query: 187 ccaccgtcgcgctcggcaactacctcagcacg 218
|||||||||| ||||| |||||||||||||||
Sbjct: 437 ccaccgtcgccctcgggaactacctcagcacg 468
>gb|BG906609.1|BG906609 TaLr1151A12R TaLr1 Triticum aestivum cDNA clone TaLr1151A12 5',
mRNA sequence
Length = 572
Score = 206 bits (104), Expect = 1e-051
Identities = 134/144 (93%)
Strand = Plus / Minus
Query: 75 cagtacttcatcatcgggtgcgcggaggtgttcaccttcgtggggcagctggagttcttc 134
||||||||||||||||| ||| ||||| |||||||||||||| ||||| |||||||||
Sbjct: 572 cagtacttcatcatcggcgccgccgaggtcttcaccttcgtgggccagctcgagttcttc 513
Query: 135 tacgaccaggcgcccgacgccatgaggagcatgtgctccgcgctgtcgctcaccaccgtc 194
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct: 512 tacgaccaggcgcccgacgccatgaggagcatgtgctccgcgctctccctcaccaccgtc 453
Query: 195 gcgctcggcaactacctcagcacg 218
|||||||| |||||||||||||||
Sbjct: 452 gcgctcgggaactacctcagcacg 429
Score = 147 bits (74), Expect = 1e-033
Identities = 116/130 (89%)
Strand = Plus / Minus
Query: 267 gggtggatcccggagaacctcaaccgcggccacctcgactacttcttctggctgctcgcc 326
||||||||||| || ||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 380 gggtggatccccgacaacctcaacgtcggccacctcgactacttcttctggctgctcgcc 321
Query: 327 gtgctcagccttctcaacttccttgcctacctcgtcatcgccagctggtacaagtacaag 386
| ||||||||| ||||||||| | ||||||| |||||||||||||||||| ||||||
Sbjct: 320 gcgctcagcctcctcaacttcgccgtctacctcctcatcgccagctggtacacctacaag 261
Query: 387 aagacggccg 396
||||| ||||
Sbjct: 260 aagaccgccg 251
>gb|DN829719.1|DN829719 KUCD01_05_A09_T3 WSWR cDNA library Triticum aestivum cDNA, mRNA
sequence
Length = 995
Score = 206 bits (104), Expect = 1e-051
Identities = 116/120 (96%)
Strand = Plus / Plus
Query: 99 gaggtgttcaccttcgtggggcagctggagttcttctacgaccaggcgcccgacgccatg 158
|||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct: 62 gaggtgttcaccttcgtgggccagctcgagttcttctacgaccaggcgcccgacgccatg 121
Query: 159 aggagcatgtgctccgcgctgtcgctcaccaccgtcgcgctcggcaactacctcagcacg 218
|||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct: 122 aggagcatgtgctccgcgctctcgctcaccaccgtcgcgctcgggaactacctcagcacg 181
Score = 149 bits (75), Expect = 3e-034
Identities = 132/151 (87%)
Strand = Plus / Plus
Query: 267 gggtggatcccggagaacctcaaccgcggccacctcgactacttcttctggctgctcgcc 326
||||||||||| || ||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 230 gggtggatccccgacaacctcaacgtcggccacctcgactacttcttctggctgctcgcc 289
Query: 327 gtgctcagccttctcaacttccttgcctacctcgtcatcgccagctggtacaagtacaag 386
| ||||||||| ||||||||| | ||||||| |||||||||||||||||| ||||||
Sbjct: 290 gcgctcagcctcctcaacttcgccgtctacctcctcatcgccagctggtacacctacaag 349
Query: 387 aagacggccgatgattaccctggcgccaaag 417
||||| |||| ||| |||| | ||||||||
Sbjct: 350 aagaccgccggagatgacccggacgccaaag 380
>gb|BG907457.1|BG907457 TaLr1160B10F TaLr1 Triticum aestivum cDNA clone TaLr1160B10 3',
mRNA sequence
Length = 542
Score = 147 bits (74), Expect = 1e-033
Identities = 116/130 (89%)
Strand = Plus / Minus
Query: 267 gggtggatcccggagaacctcaaccgcggccacctcgactacttcttctggctgctcgcc 326
||||||||||| || ||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 516 gggtggatccccgacaacctcaacgtcggccacctcgactacttcttctggctgctcgcc 457
Query: 327 gtgctcagccttctcaacttccttgcctacctcgtcatcgccagctggtacaagtacaag 386
| ||||||||| ||||||||| | ||||||| |||||||||||||||||| ||||||
Sbjct: 456 gcgctcagcctcctcaacttcgccgtctacctcctcatcgccagctggtacacctacaag 397
Query: 387 aagacggccg 396
||||| ||||
Sbjct: 396 aagaccgccg 387
>gb|BQ168862.1|BQ168862 WHE2471_G05_M09ZT Triticum monococcum early reproductive apex cDNA
library Triticum monococcum cDNA clone WHE2471_G05_M09,
mRNA sequence
Length = 402
Score = 147 bits (74), Expect = 1e-033
Identities = 116/130 (89%)
Strand = Plus / Minus
Query: 267 gggtggatcccggagaacctcaaccgcggccacctcgactacttcttctggctgctcgcc 326
||||||||||| || ||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 377 gggtggatccccgacaacctcaacgtcggccacctcgactacttcttctggctgctcgcc 318
Query: 327 gtgctcagccttctcaacttccttgcctacctcgtcatcgccagctggtacaagtacaag 386
| ||||||||| ||||||||| | ||||||| |||||||||||||||||| ||||||
Sbjct: 317 gcgctcagcctcctcaacttcgccgtctacctcctcatcgccagctggtacacctacaag 258
Query: 387 aagacggccg 396
||||| ||||
Sbjct: 257 aagaccgccg 248
>gb|CV763676.1|CV763676 FGAS058059 Triticum aestivum FGAS: Library 2 Gate 3 Triticum
aestivum cDNA, mRNA sequence
Length = 851
Score = 125 bits (63), Expect = 4e-027
Identities = 145/167 (86%), Gaps = 4/167 (2%)
Strand = Plus / Plus
Query: 7 ccatcgcgcggcacggcctgtacggcgaggacgacatcgtgcccatctccatctgctggc 66
||||||||| || |||||| ||| ||||| | ||| | |||||||||||||||| |||||
Sbjct: 598 ccatcgcgcagcgcggcctctaccgcgagaaggacgtggtgcccatctccatcttctggc 657
Query: 67 agataccgcagtacttcatcatcgggtgcgcggaggtgtt-caccttcgtgggg-cagct 124
|| | |||||||||||||||||||| ||| ||||| || ||||||||||||| |||||
Sbjct: 658 aggtgccgcagtacttcatcatcggcgccgccgaggtcttccaccttcgtggggccagct 717
Query: 125 ggagtt-cttctacgacca-ggcgcccgacgccatgaggagcatgtg 169
||||| |||||||||||| |||||||||||||||||||| ||||||
Sbjct: 718 cgagttccttctacgaccagggcgcccgacgccatgaggaacatgtg 764
>gb|BJ266454.1|BJ266454 BJ266454 Y. Ogihara unpublished cDNA library, Wh_h Triticum
aestivum cDNA clone whh26m02 3', mRNA sequence
Length = 320
Score = 109 bits (55), Expect = 2e-022
Identities = 99/115 (86%)
Strand = Plus / Minus
Query: 282 aacctcaaccgcggccacctcgactacttcttctggctgctcgccgtgctcagccttctc 341
||||||||| ||||||||||||||||||||||||||||||||||| ||||||||| ||
Sbjct: 271 aacctcaacgtcggccacctcgactacttcttctggctgctcgccgcgctcagcctcntc 212
Query: 342 aacttccttgcctacctcgtcatcgccagctggtacaagtacaagaagacggccg 396
|| ||| | ||||||| |||||||||| ||||||| |||||||||| ||||
Sbjct: 211 aanttcgccgtctacctcctcatcgccagntggtacaccnacaagaagaccgccg 157
>gb|CK151503.1|CK151503 FGAS034070 Triticum aestivum FGAS: TaLt3 Triticum aestivum cDNA,
mRNA sequence
Length = 864
Score = 109 bits (55), Expect = 2e-022
Identities = 103/119 (86%)
Strand = Plus / Plus
Query: 97 cggaggtgttcaccttcgtggggcagctggagttcttctacgaccaggcgcccgacgcca 156
||||||||||||||||| | ||| ||| |||||||||||||||||| |||| |||||||
Sbjct: 599 cggaggtgttcaccttcatcggggcgctcgagttcttctacgaccagtcgccggacgcca 658
Query: 157 tgaggagcatgtgctccgcgctgtcgctcaccaccgtcgcgctcggcaactacctcagc 215
|||||||| | ||| ||||||| |||||||||| ||||||||| ||||||||||||
Sbjct: 659 tgaggagcctctgcagcgcgctgcagctcaccaccaccgcgctcgggaactacctcagc 717
Score = 58.0 bits (29), Expect = 7e-007
Identities = 68/81 (83%)
Strand = Plus / Plus
Query: 267 gggtggatcccggagaacctcaaccgcggccacctcgactacttcttctggctgctcgcc 326
||||||||||| || ||||| ||| || | |||||| |||||||||||||||||||
Sbjct: 770 gggtggatccccgacaacctgaacgaggggcgcctcgataacttcttctggctgctcgcg 829
Query: 327 gtgctcagccttctcaacttc 347
| ||||||| |||||||||||
Sbjct: 830 gggctcagctttctcaacttc 850
>gb|BE431020.1|BE431020 SUN010.D10F991222 ITEC SUN Wheat cDNA Library Triticum aestivum
cDNA clone SUN010.D10, mRNA sequence
Length = 623
Score = 101 bits (51), Expect = 5e-020
Identities = 102/119 (85%)
Strand = Plus / Plus
Query: 97 cggaggtgttcaccttcgtggggcagctggagttcttctacgaccaggcgcccgacgcca 156
||||||||||||||||| | ||| ||| |||||||||||||||||| |||| |||||||
Sbjct: 329 cggaggtgttcaccttcatcggggcgctcgagttcttctacgaccagtcgccggacgcca 388
Query: 157 tgaggagcatgtgctccgcgctgtcgctcaccaccgtcgcgctcggcaactacctcagc 215
|||||||| | ||| ||||||| ||||| |||| ||||||||| ||||||||||||
Sbjct: 389 tgaggagcctctgcagcgcgctgcagctcatcaccaccgcgctcgggaactacctcagc 447
Score = 61.9 bits (31), Expect = 5e-008
Identities = 43/47 (91%)
Strand = Plus / Plus
Query: 300 ctcgactacttcttctggctgctcgccgtgctcagccttctcaactt 346
||||| |||||||||||||||||||| | ||||||| ||||||||||
Sbjct: 532 ctcgattacttcttctggctgctcgcggggctcagctttctcaactt 578
>gb|BJ283923.1|BJ283923 BJ283923 Y. Ogihara unpublished cDNA library, Wh_r Triticum
aestivum cDNA clone whr18b20 3', mRNA sequence
Length = 563
Score = 101 bits (51), Expect = 5e-020
Identities = 102/119 (85%)
Strand = Plus / Minus
Query: 97 cggaggtgttcaccttcgtggggcagctggagttcttctacgaccaggcgcccgacgcca 156
||||||||||||||||| | ||| ||| |||||||||||||||||| |||| |||||||
Sbjct: 561 cggaggtgttcaccttcatcggggcgctcgagttcttctacgaccagtcgccggacgcca 502
Query: 157 tgaggagcatgtgctccgcgctgtcgctcaccaccgtcgcgctcggcaactacctcagc 215
|||||||| | ||| ||||||| ||||| |||| ||||||||| ||||||||||||
Sbjct: 501 tgaggagcctctgcagcgcgctgcagctcatcaccaccgcgctcgggaactacctcagc 443
Score = 60.0 bits (30), Expect = 2e-007
Identities = 69/82 (84%)
Strand = Plus / Minus
Query: 266 cgggtggatcccggagaacctcaaccgcggccacctcgactacttcttctggctgctcgc 325
|||||||||||| || ||||| ||| || | |||||| |||||||||||||||||||
Sbjct: 392 cgggtggatccccgacaacctgaacgaggggcgcctcgataacttcttctggctgctcgc 333
Query: 326 cgtgctcagccttctcaacttc 347
| ||||||| |||||||||||
Sbjct: 332 ggggctcagctttctcaacttc 311
>gb|BU100289.1|BU100289 WHE3351_E06_I11ZS Chinese Spring aluminum-stressed root tip cDNA
library Triticum aestivum cDNA clone WHE3351_E06_I11,
mRNA sequence
Length = 712
Score = 101 bits (51), Expect = 5e-020
Identities = 102/119 (85%)
Strand = Plus / Plus
Query: 97 cggaggtgttcaccttcgtggggcagctggagttcttctacgaccaggcgcccgacgcca 156
||||||||||||||||| | ||| ||| |||||||||||||||||| |||| |||||||
Sbjct: 126 cggaggtgttcaccttcatcggggcgctcgagttcttctacgaccagtcgccggacgcca 185
Query: 157 tgaggagcatgtgctccgcgctgtcgctcaccaccgtcgcgctcggcaactacctcagc 215
|||||||| | ||| ||||||| ||||| |||| ||||||||| ||||||||||||
Sbjct: 186 tgaggagcctctgcagcgcgctgcagctcatcaccaccgcgctcgggaactacctcagc 244
Score = 61.9 bits (31), Expect = 5e-008
Identities = 43/47 (91%)
Strand = Plus / Plus
Query: 300 ctcgactacttcttctggctgctcgccgtgctcagccttctcaactt 346
||||| |||||||||||||||||||| | ||||||| ||||||||||
Sbjct: 329 ctcgattacttcttctggctgctcgcggggctcagctttctcaactt 375
>gb|CD876503.1|CD876503 AZO3.110A08R011127 AZO3 Triticum aestivum cDNA clone AZO3110A08,
mRNA sequence
Length = 572
Score = 101 bits (51), Expect = 5e-020
Identities = 102/119 (85%)
Strand = Plus / Minus
Query: 97 cggaggtgttcaccttcgtggggcagctggagttcttctacgaccaggcgcccgacgcca 156
||||||||||||||||| | ||| ||| |||||||||||||||||| |||| |||||||
Sbjct: 438 cggaggtgttcaccttcatcggggcgctcgagttcttctacgaccagtcgccggacgcca 379
Query: 157 tgaggagcatgtgctccgcgctgtcgctcaccaccgtcgcgctcggcaactacctcagc 215
|||||||| | ||| ||||||| ||||| |||| ||||||||| ||||||||||||
Sbjct: 378 tgaggagcctctgcagcgcgctgcagctcatcaccaccgcgctcgggaactacctcagc 320
Score = 60.0 bits (30), Expect = 2e-007
Identities = 69/82 (84%)
Strand = Plus / Minus
Query: 266 cgggtggatcccggagaacctcaaccgcggccacctcgactacttcttctggctgctcgc 325
|||||||||||| || ||||| ||| || | |||||| |||||||||||||||||||
Sbjct: 269 cgggtggatccccgacaacctgaacgaggggcgcctcgataacttcttctggctgctcgc 210
Query: 326 cgtgctcagccttctcaacttc 347
| ||||||| |||||||||||
Sbjct: 209 ggggctcagctttctcaacttc 188
>gb|BJ278042.1|BJ278042 BJ278042 Y. Ogihara unpublished cDNA library, Wh_r Triticum
aestivum cDNA clone whr14f08 5', mRNA sequence
Length = 499
Score = 89.7 bits (45), Expect = 2e-016
Identities = 84/97 (86%)
Strand = Plus / Plus
Query: 119 gcagctggagttcttctacgaccaggcgcccgacgccatgaggagcatgtgctccgcgct 178
||||||||||||||||||| || ||||||| ||| |||||| |||||||||| || ||||
Sbjct: 50 gcagctggagttcttctacaacgaggcgccggacaccatgaagagcatgtgcacctcgct 109
Query: 179 gtcgctcaccaccgtcgcgctcggcaactacctcagc 215
| |||| |||| |||||||||||| ||||||||||
Sbjct: 110 ggcgctgctcaccatcgcgctcggcagctacctcagc 146
Score = 54.0 bits (27), Expect = 1e-005
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 283 acctcaaccgcggccacctcgactacttcttctgg 317
||||||||| ||||||||||||||||||||||||
Sbjct: 214 acctcaaccagggccacctcgactacttcttctgg 248
>gb|BJ283102.1|BJ283102 BJ283102 Y. Ogihara unpublished cDNA library, Wh_r Triticum
aestivum cDNA clone whr14f08 3', mRNA sequence
Length = 471
Score = 89.7 bits (45), Expect = 2e-016
Identities = 84/97 (86%)
Strand = Plus / Minus
Query: 119 gcagctggagttcttctacgaccaggcgcccgacgccatgaggagcatgtgctccgcgct 178
||||||||||||||||||| || ||||||| ||| |||||| |||||||||| || ||||
Sbjct: 422 gcagctggagttcttctacaacgaggcgccggacaccatgaagagcatgtgcacctcgct 363
Query: 179 gtcgctcaccaccgtcgcgctcggcaactacctcagc 215
| |||| |||| |||||||||||| ||||||||||
Sbjct: 362 ggcgctgctcaccatcgcgctcggcagctacctcagc 326
Score = 54.0 bits (27), Expect = 1e-005
Identities = 33/35 (94%)
Strand = Plus / Minus
Query: 283 acctcaaccgcggccacctcgactacttcttctgg 317
||||||||| ||||||||||||||||||||||||
Sbjct: 258 acctcaaccagggccacctcgactacttcttctgg 224
>gb|CA652132.1|CA652132 wre1n.pk178.c9 wre1n Triticum aestivum cDNA clone wre1n.pk178.c9 5'
end, mRNA sequence
Length = 506
Score = 87.7 bits (44), Expect = 8e-016
Identities = 95/112 (84%)
Strand = Plus / Plus
Query: 104 gttcaccttcgtggggcagctggagttcttctacgaccaggcgcccgacgccatgaggag 163
|||||||||| | ||| ||| |||||||||||||||||| |||| ||||||||||||||
Sbjct: 1 gttcaccttcatcggggcgctcgagttcttctacgaccagtcgccggacgccatgaggag 60
Query: 164 catgtgctccgcgctgtcgctcaccaccgtcgcgctcggcaactacctcagc 215
| | ||| ||||||| ||||| |||| ||||||||| ||||||||||||
Sbjct: 61 cctctgcagcgcgctgcagctcatcaccaccgcgctcgggaactacctcagc 112
Score = 61.9 bits (31), Expect = 5e-008
Identities = 43/47 (91%)
Strand = Plus / Plus
Query: 300 ctcgactacttcttctggctgctcgccgtgctcagccttctcaactt 346
||||| |||||||||||||||||||| | ||||||| ||||||||||
Sbjct: 197 ctcgattacttcttctggctgctcgcggggctcagctttctcaactt 243
>gb|BJ283653.1|BJ283653 BJ283653 Y. Ogihara unpublished cDNA library, Wh_r Triticum
aestivum cDNA clone whr16o21 3', mRNA sequence
Length = 575
Score = 85.7 bits (43), Expect = 3e-015
Identities = 100/119 (84%)
Strand = Plus / Minus
Query: 97 cggaggtgttcaccttcgtggggcagctggagttcttctacgaccaggcgcccgacgcca 156
||||||||||||||||| | ||| ||| |||||||||||||||||| |||| |||||||
Sbjct: 433 cggaggtgttcaccttcatcggggcgctcgagttcttctacgaccagtcgccggacgcca 374
Query: 157 tgaggagcatgtgctccgcgctgtcgctcaccaccgtcgcgctcggcaactacctcagc 215
|| ||||| | ||| |||||| ||||| |||| ||||||||| ||||||||||||
Sbjct: 373 tgcggagcctctgcagtgcgctgcagctcatcaccaccgcgctcgggaactacctcagc 315
Score = 65.9 bits (33), Expect = 3e-009
Identities = 69/81 (85%)
Strand = Plus / Minus
Query: 266 cgggtggatcccggagaacctcaaccgcggccacctcgactacttcttctggctgctcgc 325
|||||||||||| || ||||||||| || | ||| || ||||||||||||||||||||
Sbjct: 264 cgggtggatccctgacaacctcaacgaggggcgccttgattacttcttctggctgctcgc 205
Query: 326 cgtgctcagccttctcaactt 346
| ||||||| ||||||||||
Sbjct: 204 ggggctcagctttctcaactt 184
>gb|BJ285652.1|BJ285652 BJ285652 Y. Ogihara unpublished cDNA library, Wh_r Triticum
aestivum cDNA clone whr9f17 3', mRNA sequence
Length = 610
Score = 85.7 bits (43), Expect = 3e-015
Identities = 100/119 (84%)
Strand = Plus / Minus
Query: 97 cggaggtgttcaccttcgtggggcagctggagttcttctacgaccaggcgcccgacgcca 156
||||||||||||||||| | ||| ||| |||||||||||||||||| |||| |||||||
Sbjct: 426 cggaggtgttcaccttcatcggggcgctcgagttcttctacgaccagtcgccggacgcca 367
Query: 157 tgaggagcatgtgctccgcgctgtcgctcaccaccgtcgcgctcggcaactacctcagc 215
|| ||||| | ||| |||||| ||||| |||| ||||||||| ||||||||||||
Sbjct: 366 tgcggagcctctgcagtgcgctgcagctcatcaccaccgcgctcgggaactacctcagc 308
Score = 65.9 bits (33), Expect = 3e-009
Identities = 69/81 (85%)
Strand = Plus / Minus
Query: 266 cgggtggatcccggagaacctcaaccgcggccacctcgactacttcttctggctgctcgc 325
|||||||||||| || ||||||||| || | ||| || ||||||||||||||||||||
Sbjct: 257 cgggtggatccctgacaacctcaacgaggggcgccttgattacttcttctggctgctcgc 198
Query: 326 cgtgctcagccttctcaactt 346
| ||||||| ||||||||||
Sbjct: 197 ggggctcagctttctcaactt 177
>gb|CK163292.1|CK163292 FGAS015914 Triticum aestivum FGAS: Library 4 Gate 8 Triticum
aestivum cDNA, mRNA sequence
Length = 1073
Score = 85.7 bits (43), Expect = 3e-015
Identities = 100/119 (84%)
Strand = Plus / Plus
Query: 97 cggaggtgttcaccttcgtggggcagctggagttcttctacgaccaggcgcccgacgcca 156
||||||||||||||||| | ||| ||| |||||||||||||||||| |||| |||||||
Sbjct: 330 cggaggtgttcaccttcatcggggcgctcgagttcttctacgaccagtcgccggacgcca 389
Query: 157 tgaggagcatgtgctccgcgctgtcgctcaccaccgtcgcgctcggcaactacctcagc 215
|| ||||| | ||| |||||| ||||| |||| ||||||||| ||||||||||||
Sbjct: 390 tgcggagcctctgcagtgcgctgcagctcatcaccaccgcgctcgggaactacctcagc 448
Score = 65.9 bits (33), Expect = 3e-009
Identities = 69/81 (85%)
Strand = Plus / Plus
Query: 266 cgggtggatcccggagaacctcaaccgcggccacctcgactacttcttctggctgctcgc 325
|||||||||||| || ||||||||| || | ||| || ||||||||||||||||||||
Sbjct: 499 cgggtggatccctgacaacctcaacgaggggcgccttgattacttcttctggctgctcgc 558
Query: 326 cgtgctcagccttctcaactt 346
| ||||||| ||||||||||
Sbjct: 559 ggggctcagctttctcaactt 579
>gb|CA705246.1|CA705246 wdk1c.pk019.a7 wdk1c Triticum aestivum cDNA clone wdk1c.pk019.a7 5'
end, mRNA sequence
Length = 394
Score = 83.8 bits (42), Expect = 1e-014
Identities = 78/90 (86%)
Strand = Plus / Plus
Query: 126 gagttcttctacgaccaggcgcccgacgccatgaggagcatgtgctccgcgctgtcgctc 185
|||||||||||||||||| |||| ||||||||||||||| | ||| ||||||| ||||
Sbjct: 3 gagttcttctacgaccagtcgccggacgccatgaggagcctctgcagcgcgctgcagctc 62
Query: 186 accaccgtcgcgctcggcaactacctcagc 215
| |||| ||||||||| ||||||||||||
Sbjct: 63 atcaccaccgcgctcgggaactacctcagc 92
>gb|CA609734.1|CA609734 wr1.pk0111.h12 wr1 Triticum aestivum cDNA clone wr1.pk0111.h12 5'
end, mRNA sequence
Length = 470
Score = 81.8 bits (41), Expect = 5e-014
Identities = 80/93 (86%)
Strand = Plus / Plus
Query: 119 gcagctggagttcttctacgaccaggcgcccgacgccatgaggagcatgtgctccgcgct 178
||||||||||||||||||| || ||||||||||| |||||| |||||||||| || ||||
Sbjct: 55 gcagctggagttcttctacaacgaggcgcccgacaccatgaagagcatgtgcacctcgct 114
Query: 179 gtcgctcaccaccgtcgcgctcggcaactacct 211
|||| |||| |||||||||||| ||||||
Sbjct: 115 cgcgctgctcaccatcgcgctcggcagctacct 147
>gb|BE493457.1|BE493457 WHE0580_C12_C12ZE Triticum monococcum vegetative apex cDNA library
Triticum monococcum cDNA clone WHE0580_C12_C12, mRNA
sequence
Length = 363
Score = 77.8 bits (39), Expect = 8e-013
Identities = 48/51 (94%)
Strand = Plus / Plus
Query: 282 aacctcaaccgcggccacctcgactacttcttctggctgctcgccgtgctc 332
||||||||||||| ||||||||||||||||| |||||||||||||| ||||
Sbjct: 178 aacctcaaccgcgcccacctcgactacttctactggctgctcgccgggctc 228
Score = 52.0 bits (26), Expect = 5e-005
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 125 ggagttcttctacgaccaggcgcccgacgc 154
|||||||||||||||||||| |||||||||
Sbjct: 24 ggagttcttctacgaccaggtgcccgacgc 53
>gb|BQ802151.1|BQ802151 WHE2822_F07_K14ZS Triticum monococcum vernalized apex cDNA library
Triticum monococcum cDNA clone WHE2822_F07_K14, mRNA
sequence
Length = 566
Score = 77.8 bits (39), Expect = 8e-013
Identities = 48/51 (94%)
Strand = Plus / Plus
Query: 282 aacctcaaccgcggccacctcgactacttcttctggctgctcgccgtgctc 332
||||||||||||| ||||||||||||||||| |||||||||||||| ||||
Sbjct: 240 aacctcaaccgcgcccacctcgactacttctactggctgctcgccgggctc 290
Score = 52.0 bits (26), Expect = 5e-005
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 125 ggagttcttctacgaccaggcgcccgacgc 154
|||||||||||||||||||| |||||||||
Sbjct: 86 ggagttcttctacgaccaggtgcccgacgc 115
>gb|CV782498.1|CV782498 FGAS076911 Triticum aestivum FGAS: Library 2 Gate 3 Triticum
aestivum cDNA, mRNA sequence
Length = 837
Score = 73.8 bits (37), Expect = 1e-011
Identities = 79/93 (84%)
Strand = Plus / Plus
Query: 119 gcagctggagttcttctacgaccaggcgcccgacgccatgaggagcatgtgctccgcgct 178
||||||||||||||||||| || ||||||||||| |||||| |||||||||| || ||||
Sbjct: 346 gcagctggagttcttctacaacgaggcgcccgacaccatgaagagcatgtgcacctcgct 405
Query: 179 gtcgctcaccaccgtcgcgctcggcaactacct 211
|||| |||| |||||||||| | ||||||
Sbjct: 406 cgcgctgctcaccatcgcgctcggaagctacct 438
Score = 42.1 bits (21), Expect = 0.044
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 297 cacctcgactacttcttctgg 317
|||||||||||||||||||||
Sbjct: 524 cacctcgactacttcttctgg 544
>gb|BG908508.1|BG908508 TaLr1168H03F TaLr1 Triticum aestivum cDNA clone TaLr1168H03 3',
mRNA sequence
Length = 479
Score = 71.9 bits (36), Expect = 5e-011
Identities = 54/60 (90%)
Strand = Plus / Minus
Query: 99 gaggtgttcaccttcgtggggcagctggagttcttctacgaccaggcgcccgacgccatg 158
||||||||||| ||| | |||||| ||||||||||||| ||||||||||| |||||||||
Sbjct: 369 gaggtgttcacgttcatcgggcagatggagttcttctatgaccaggcgccggacgccatg 310
Score = 48.1 bits (24), Expect = 7e-004
Identities = 36/40 (90%)
Strand = Plus / Minus
Query: 293 cggccacctcgactacttcttctggctgctcgccgtgctc 332
|||||| || |||||||| ||||||||||||||| |||||
Sbjct: 175 cggccatctggactactttttctggctgctcgccatgctc 136
>gb|BG908617.1|BG908617 TaLr1169H03F TaLr1 Triticum aestivum cDNA clone TaLr1169H03 3',
mRNA sequence
Length = 643
Score = 71.9 bits (36), Expect = 5e-011
Identities = 54/60 (90%)
Strand = Plus / Minus
Query: 99 gaggtgttcaccttcgtggggcagctggagttcttctacgaccaggcgcccgacgccatg 158
||||||||||| ||| | |||||| ||||||||||||| ||||||||||| |||||||||
Sbjct: 397 gaggtgttcacgttcatcgggcagatggagttcttctatgaccaggcgccggacgccatg 338
Score = 48.1 bits (24), Expect = 7e-004
Identities = 36/40 (90%)
Strand = Plus / Minus
Query: 293 cggccacctcgactacttcttctggctgctcgccgtgctc 332
|||||| || |||||||| ||||||||||||||| |||||
Sbjct: 203 cggccatctggactactttttctggctgctcgccatgctc 164
>gb|CA688785.1|CA688785 wlm96.pk042.m24 wlm96 Triticum aestivum cDNA clone wlm96.pk042.m24
5' end, mRNA sequence
Length = 494
Score = 71.9 bits (36), Expect = 5e-011
Identities = 54/60 (90%)
Strand = Plus / Minus
Query: 99 gaggtgttcaccttcgtggggcagctggagttcttctacgaccaggcgcccgacgccatg 158
||||||||||| ||| | |||||| ||||||||||||| ||||||||||| |||||||||
Sbjct: 405 gaggtgttcacgttcatcgggcagatggagttcttctatgaccaggcgccggacgccatg 346
Score = 48.1 bits (24), Expect = 7e-004
Identities = 36/40 (90%)
Strand = Plus / Minus
Query: 293 cggccacctcgactacttcttctggctgctcgccgtgctc 332
|||||| || |||||||| ||||||||||||||| |||||
Sbjct: 211 cggccatctggactactttttctggctgctcgccatgctc 172
>gb|CK209111.1|CK209111 FGAS020854 Triticum aestivum FGAS: Library 5 GATE 7 Triticum
aestivum cDNA, mRNA sequence
Length = 1145
Score = 71.9 bits (36), Expect = 5e-011
Identities = 54/60 (90%)
Strand = Plus / Minus
Query: 99 gaggtgttcaccttcgtggggcagctggagttcttctacgaccaggcgcccgacgccatg 158
||||||||||| ||| | |||||| ||||||||||||| ||||||||||| |||||||||
Sbjct: 409 gaggtgttcacgttcatcgggcagatggagttcttctatgaccaggcgccggacgccatg 350
Score = 48.1 bits (24), Expect = 7e-004
Identities = 36/40 (90%)
Strand = Plus / Minus
Query: 293 cggccacctcgactacttcttctggctgctcgccgtgctc 332
|||||| || |||||||| ||||||||||||||| |||||
Sbjct: 215 cggccatctggactactttttctggctgctcgccatgctc 176
>emb|AX756336.1| Sequence 1075 from Patent WO03000905
Length = 1081
Score = 71.9 bits (36), Expect = 5e-011
Identities = 100/120 (83%), Gaps = 1/120 (0%)
Strand = Plus / Plus
Query: 97 cggaggtgttcaccttcgtggggcagctg-gagttcttctacgaccaggcgcccgacgcc 155
||||||||||||||||| | ||| ||| |||||||||||||||||| |||| ||||||
Sbjct: 548 cggaggtgttcaccttcatcggggcgctacgagttcttctacgaccagtcgccggacgcc 607
Query: 156 atgaggagcatgtgctccgcgctgtcgctcaccaccgtcgcgctcggcaactacctcagc 215
||| ||||| | ||| |||||| ||||| |||| ||||||||| ||||||||||||
Sbjct: 608 atgcggagcctctgcagtgcgctgcagctcatcaccaccgcgctcgggaactacctcagc 667
Score = 65.9 bits (33), Expect = 3e-009
Identities = 69/81 (85%)
Strand = Plus / Plus
Query: 266 cgggtggatcccggagaacctcaaccgcggccacctcgactacttcttctggctgctcgc 325
|||||||||||| || ||||||||| || | ||| || ||||||||||||||||||||
Sbjct: 718 cgggtggatccctgacaacctcaacgaggggcgccttgattacttcttctggctgctcgc 777
Query: 326 cgtgctcagccttctcaactt 346
| ||||||| ||||||||||
Sbjct: 778 ggggctcagctttctcaactt 798
>gb|BJ227054.1|BJ227054 BJ227054 Y. Ogihara unpublished cDNA library, Wh_dL Triticum
aestivum cDNA clone whdl11i10 3', mRNA sequence
Length = 422
Score = 69.9 bits (35), Expect = 2e-010
Identities = 47/51 (92%)
Strand = Plus / Minus
Query: 282 aacctcaaccgcggccacctcgactacttcttctggctgctcgccgtgctc 332
||||||||||||| |||||||||||||||| |||||||||||||| ||||
Sbjct: 157 aacctcaaccgcgcgcacctcgactacttctactggctgctcgccgggctc 107
Score = 44.1 bits (22), Expect = 0.011
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 125 ggagttcttctacgaccaggcgcccgacgc 154
|||||||||||||||||||| ||||||||
Sbjct: 311 ggagttcttctacgaccaggtccccgacgc 282
>gb|BJ263562.1|BJ263562 BJ263562 Y. Ogihara unpublished cDNA library, Wh_h Triticum
aestivum cDNA clone whh5c24 3', mRNA sequence
Length = 661
Score = 69.9 bits (35), Expect = 2e-010
Identities = 47/51 (92%)
Strand = Plus / Minus
Query: 282 aacctcaaccgcggccacctcgactacttcttctggctgctcgccgtgctc 332
||||||||||||| |||||||||||| |||| |||||||||||||| ||||
Sbjct: 406 aacctcaaccgcgcccacctcgactatttctactggctgctcgccgcgctc 356
>gb|AL829161.1|AL829161 AL829161 q:141 Triticum aestivum cDNA clone A08_q141_plate_4, mRNA
sequence
Length = 418
Score = 69.9 bits (35), Expect = 2e-010
Identities = 47/51 (92%)
Strand = Plus / Plus
Query: 282 aacctcaaccgcggccacctcgactacttcttctggctgctcgccgtgctc 332
||||||||||||| |||||||||||||||| |||||||||||||| ||||
Sbjct: 181 aacctcaaccgcgcgcacctcgactacttctactggctgctcgccgggctc 231
>gb|CD869494.1|CD869494 AZO2.111M18R010402 AZO2 Triticum aestivum cDNA clone AZO2111M18,
mRNA sequence
Length = 675
Score = 69.9 bits (35), Expect = 2e-010
Identities = 47/51 (92%)
Strand = Plus / Minus
Query: 282 aacctcaaccgcggccacctcgactacttcttctggctgctcgccgtgctc 332
||||||||||||| |||||||||||||||| |||||||||||||| ||||
Sbjct: 260 aacctcaaccgcgcgcacctcgactacttctactggctgctcgccgggctc 210
Score = 44.1 bits (22), Expect = 0.011
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 125 ggagttcttctacgaccaggcgcccgacgc 154
|||||||||||||||||||| ||||||||
Sbjct: 414 ggagttcttctacgaccaggtccccgacgc 385
>gb|CD896229.1|CD896229 G174.102C22R011120 G174 Triticum aestivum cDNA clone G174102C22,
mRNA sequence
Length = 660
Score = 69.9 bits (35), Expect = 2e-010
Identities = 47/51 (92%)
Strand = Plus / Minus
Query: 282 aacctcaaccgcggccacctcgactacttcttctggctgctcgccgtgctc 332
||||||||||||| |||||||||||||||| |||||||||||||| ||||
Sbjct: 334 aacctcaaccgcgcgcacctcgactacttctactggctgctcgccgggctc 284
Score = 46.1 bits (23), Expect = 0.003
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 125 ggagttcttctacgaccaggcgcccgacgcc 155
|||||||||||||||||||| |||||||||
Sbjct: 488 ggagttcttctacgaccaggtccccgacgcc 458
>gb|CA662783.1|CA662783 wlmk1.pk0024.e7 wlmk1 Triticum aestivum cDNA clone wlmk1.pk0024.e7
5' end, mRNA sequence
Length = 500
Score = 67.9 bits (34), Expect = 8e-010
Identities = 50/56 (89%)
Strand = Plus / Minus
Query: 277 cggagaacctcaaccgcggccacctcgactacttcttctggctgctcgccgtgctc 332
|||| ||||| ||||||| |||| |||||||||||| |||||||||||||| ||||
Sbjct: 340 cggacaacctnaaccgcgcccacntcgactacttctactggctgctcgccgggctc 285
>gb|BQ236474.1|BQ236474 TaE05031C09F TaE05 Triticum aestivum cDNA clone TaE05031C09F, mRNA
sequence
Length = 407
Score = 65.9 bits (33), Expect = 3e-009
Identities = 69/81 (85%)
Strand = Plus / Minus
Query: 266 cgggtggatcccggagaacctcaaccgcggccacctcgactacttcttctggctgctcgc 325
|||||||||||| || ||||||||| || | ||| || ||||||||||||||||||||
Sbjct: 322 cgggtggatccctgacaacctcaacgaggggcgccttgattacttcttctggctgctcgc 263
Query: 326 cgtgctcagccttctcaactt 346
| ||||||| ||||||||||
Sbjct: 262 ggggctcagctttctcaactt 242
>gb|BQ239500.1|BQ239500 TaE05030C01R TaE05 Triticum aestivum cDNA clone TaE05030C01R, mRNA
sequence
Length = 465
Score = 63.9 bits (32), Expect = 1e-008
Identities = 38/40 (95%)
Strand = Plus / Plus
Query: 293 cggccacctcgactacttcttctggctgctcgccgtgctc 332
||||||||| |||||||||||||||||||||||| |||||
Sbjct: 167 cggccacctggactacttcttctggctgctcgccatgctc 206
>gb|BJ245193.1|BJ245193 BJ245193 Y. Ogihara unpublished cDNA library, Wh_f Triticum
aestivum cDNA clone whf18h01 5', mRNA sequence
Length = 515
Score = 61.9 bits (31), Expect = 5e-008
Identities = 46/51 (90%)
Strand = Plus / Plus
Query: 270 tggatcccggagaacctcaaccgcggccacctcgactacttcttctggctg 320
|||||||||||| ||||| || ||||||||| ||||||||||||||||||
Sbjct: 199 tggatcccggaggacctcgacgacggccacctggactacttcttctggctg 249
Score = 52.0 bits (26), Expect = 5e-005
Identities = 41/46 (89%)
Strand = Plus / Plus
Query: 130 tcttctacgaccaggcgcccgacgccatgaggagcatgtgctccgc 175
||||||||||||| ||||||||| |||||||||| ||||| ||||
Sbjct: 77 tcttctacgaccaagcgcccgacagcatgaggagcctgtgcaccgc 122
>gb|BQ171231.1|BQ171231 WHE2342_B04_C08ZT Wheat pre-anthesis spike cDNA library Triticum
aestivum cDNA clone WHE2342_B04_C08, mRNA sequence
Length = 419
Score = 61.9 bits (31), Expect = 5e-008
Identities = 46/51 (90%)
Strand = Plus / Minus
Query: 270 tggatcccggagaacctcaaccgcggccacctcgactacttcttctggctg 320
|||||||||||| ||||| || ||||||||| ||||||||||||||||||
Sbjct: 303 tggatcccggaggacctcgacgacggccacctggactacttcttctggctg 253
>gb|CA601549.1|CA601549 wr1.pk0001.f8 wr1 Triticum aestivum cDNA clone wr1.pk0001.f8 5'
end, mRNA sequence
Length = 335
Score = 61.9 bits (31), Expect = 5e-008
Identities = 43/47 (91%)
Strand = Plus / Plus
Query: 300 ctcgactacttcttctggctgctcgccgtgctcagccttctcaactt 346
||||| |||||||||||||||||||| | ||||||| ||||||||||
Sbjct: 86 ctcgattacttcttctggctgctcgcggggctcagctttctcaactt 132
>gb|CA647534.1|CA647534 wre1n.pk0113.f8 wre1n Triticum aestivum cDNA clone wre1n.pk0113.f8
5' end, mRNA sequence
Length = 287
Score = 61.9 bits (31), Expect = 5e-008
Identities = 58/67 (86%)
Strand = Plus / Plus
Query: 266 cgggtggatcccggagaacctcaaccgcggccacctcgactacttcttctggctgctcgc 325
|||||||||||| || || ||||| ||| ||||| |||||||||||||||||||||||
Sbjct: 7 cgggtggatccccgacgacatcaacgacggacaccttgactacttcttctggctgctcgc 66
Query: 326 cgtgctc 332
| |||||
Sbjct: 67 catgctc 73
>gb|CA705486.1|CA705486 wdk1c.pk014.b8 wdk1c Triticum aestivum cDNA clone wdk1c.pk014.b8 5'
end, mRNA sequence
Length = 383
Score = 61.9 bits (31), Expect = 5e-008
Identities = 43/47 (91%)
Strand = Plus / Plus
Query: 300 ctcgactacttcttctggctgctcgccgtgctcagccttctcaactt 346
||||| |||||||||||||||||||| | ||||||| ||||||||||
Sbjct: 30 ctcgattacttcttctggctgctcgcggggctcagctttctcaactt 76
>gb|CD876680.1|CD876680 AZO3.110I14R011127 AZO3 Triticum aestivum cDNA clone AZO3110I14,
mRNA sequence
Length = 581
Score = 61.9 bits (31), Expect = 5e-008
Identities = 46/51 (90%)
Strand = Plus / Minus
Query: 270 tggatcccggagaacctcaaccgcggccacctcgactacttcttctggctg 320
|||||||||||| ||||| || ||||||||| ||||||||||||||||||
Sbjct: 325 tggatcccggaggacctcgacgacggccacctggactacttcttctggctg 275
Score = 52.0 bits (26), Expect = 5e-005
Identities = 41/46 (89%)
Strand = Plus / Minus
Query: 130 tcttctacgaccaggcgcccgacgccatgaggagcatgtgctccgc 175
||||||||||||| ||||||||| |||||||||| ||||| ||||
Sbjct: 447 tcttctacgaccaagcgcccgacagcatgaggagcctgtgcaccgc 402
>gb|CK210288.1|CK210288 FGAS022089 Triticum aestivum FGAS: Library 5 GATE 7 Triticum
aestivum cDNA, mRNA sequence
Length = 1156
Score = 61.9 bits (31), Expect = 5e-008
Identities = 46/51 (90%)
Strand = Plus / Plus
Query: 270 tggatcccggagaacctcaaccgcggccacctcgactacttcttctggctg 320
|||||||||||| ||||| || ||||||||| ||||||||||||||||||
Sbjct: 452 tggatcccggaggacctcgacgacggccacctggactacttcttctggctg 502
Score = 52.0 bits (26), Expect = 5e-005
Identities = 41/46 (89%)
Strand = Plus / Plus
Query: 130 tcttctacgaccaggcgcccgacgccatgaggagcatgtgctccgc 175
||||||||||||| ||||||||| |||||||||| ||||| ||||
Sbjct: 330 tcttctacgaccaagcgcccgacagcatgaggagcctgtgcaccgc 375
>gb|BQ905102.1|BQ905102 Ta04_13f10_R
Ta04_AAFC_ECORC_Fusarium_graminearum_inoculated_wheat_he
ads Triticum aestivum cDNA clone Ta04_13f10, mRNA
sequence
Length = 401
Score = 60.0 bits (30), Expect = 2e-007
Identities = 42/46 (91%)
Strand = Plus / Minus
Query: 282 aacctcaaccgcggccacctcgactacttcttctggctgctcgccg 327
||||||||||||| ||||||||||||||||| |||||||| ||||
Sbjct: 198 aacctcaaccgcgcccacctcgactacttctattggctgcttgccg 153
>gb|AJ610809.1|AJ610809 AJ610809 Triticum turgidum subsp. durum etiolated seedling 20 day
Triticum turgidum subsp. durum cDNA clone 03568R, mRNA
sequence
Length = 660
Score = 60.0 bits (30), Expect = 2e-007
Identities = 57/66 (86%)
Strand = Plus / Plus
Query: 99 gaggtgttcaccttcgtggggcagctggagttcttctacgaccaggcgcccgacgccatg 158
||||||||||| ||| | |||||| |||||||||| || ||||||||||| || ||||||
Sbjct: 400 gaggtgttcacgttcatcgggcagatggagttcttttatgaccaggcgccggatgccatg 459
Query: 159 aggagc 164
|||||
Sbjct: 460 cggagc 465
Score = 50.1 bits (25), Expect = 2e-004
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 297 cacctcgactacttcttctggctgctcgccgtgctc 332
||||| |||||||| ||||||||||||||| |||||
Sbjct: 599 cacctagactacttnttctggctgctcgccatgctc 634
>gb|CV772547.1|CV772547 FGAS066941 Triticum aestivum FGAS: Library 2 Gate 3 Triticum
aestivum cDNA, mRNA sequence
Length = 866
Score = 60.0 bits (30), Expect = 2e-007
Identities = 69/82 (84%)
Strand = Plus / Plus
Query: 266 cgggtggatcccggagaacctcaaccgcggccacctcgactacttcttctggctgctcgc 325
|||||||||||| || ||||| ||| || | |||||| |||||||||||||||||||
Sbjct: 126 cgggtggatccccgacaacctgaacgaggggcgcctcgataacttcttctggctgctcgc 185
Query: 326 cgtgctcagccttctcaacttc 347
| ||||||| |||||||||||
Sbjct: 186 ggggctcagctttctcaacttc 207
>gb|CV777855.1|CV777855 FGAS072262 Triticum aestivum FGAS: Library 2 Gate 3 Triticum
aestivum cDNA, mRNA sequence
Length = 828
Score = 60.0 bits (30), Expect = 2e-007
Identities = 69/82 (84%)
Strand = Plus / Plus
Query: 266 cgggtggatcccggagaacctcaaccgcggccacctcgactacttcttctggctgctcgc 325
|||||||||||| || ||||| ||| || | |||||| |||||||||||||||||||
Sbjct: 125 cgggtggatccccgacaacctgaacgaggggcgcctcgataacttcttctggctgctcgc 184
Query: 326 cgtgctcagccttctcaacttc 347
| ||||||| |||||||||||
Sbjct: 185 ggggctcagctttctcaacttc 206
>gb|CA617255.1|CA617255 wl1n.pk0014.d11 wl1n Triticum aestivum cDNA clone wl1n.pk0014.d11
5' end, mRNA sequence
Length = 391
Score = 58.0 bits (29), Expect = 7e-007
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 282 aacctcaaccgcggccacctcgactacttcttctggctgc 321
|||||||| |||| ||||||||||||||||| ||||||||
Sbjct: 4 aacctcaancgcgcccacctcgactacttctactggctgc 43
Database: Triticum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 3:01 PM
Number of letters in database: 367,240,239
Number of sequences in database: 636,343
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 160,800
Number of Sequences: 636343
Number of extensions: 160800
Number of successful extensions: 47389
Number of sequences better than 0.5: 114
Number of HSP's better than 0.5 without gapping: 113
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 47170
Number of HSP's gapped (non-prelim): 206
length of query: 607
length of database: 367,240,239
effective HSP length: 19
effective length of query: 588
effective length of database: 355,149,722
effective search space: 208828036536
effective search space used: 208828036536
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)