BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3204398.2.1
(666 letters)
Database: Triticum_nucl_with_EST.fasta
636,343 sequences; 367,240,239 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BE516162.1|BE516162 WHE612_G07_N14ZA Wheat ABA-treated e... 228 4e-058
gb|CK193343.1|CK193343 FGAS001757 Triticum aestivum FGAS: L... 228 4e-058
gb|BF474383.1|BF474383 WHE0843_D07_H13ZS Wheat vernalized c... 212 2e-053
gb|CA603443.1|CA603443 wr1.pk0024.c4 wr1 Triticum aestivum ... 212 2e-053
gb|CN008072.1|CN008072 WHE2637_A09_A17ZE Wheat Fusarium gra... 212 2e-053
gb|CV761162.1|CV761162 FGAS055550 Triticum aestivum FGAS: L... 204 6e-051
gb|CA639168.1|CA639168 wre1n.pk0023.c12 wre1n Triticum aest... 145 4e-033
gb|CD452497.1|CD452497 WHE1107_B01_D01ZT CS wheat etiolated... 143 2e-032
gb|BE442892.1|BE442892 WHE1107_B01_D01ZS Wheat etiolated se... 125 4e-027
gb|CN012314.1|CN012314 WHE3895_C08_E15ZS Wheat Fusarium gra... 123 2e-026
gb|BE444251.1|BE444251 WHE1117_A02_A03ZS Wheat etiolated se... 113 2e-023
gb|CA618329.1|CA618329 wl1n.pk0032.b8 wl1n Triticum aestivu... 107 1e-021
gb|CA606157.1|CA606157 wr1.pk0063.c8 wr1 Triticum aestivum ... 58 8e-007
gb|CD939676.1|CD939676 OV.114H20F010312 OV Triticum aestivu... 58 8e-007
>gb|BE516162.1|BE516162 WHE612_G07_N14ZA Wheat ABA-treated embryo cDNA library Triticum
aestivum cDNA clone WHE612_G07_N14, mRNA sequence
Length = 642
Score = 228 bits (115), Expect = 4e-058
Identities = 229/267 (85%)
Strand = Plus / Plus
Query: 1 acatctggaaactttgaattcgcacttttagctatcctcagatgcgcggaaaacccagca 60
|||||||||||||||||| | || || ||| ||||||||||||| || || || |||||
Sbjct: 264 acatctggaaactttgaagttgctctgttaactatcctcagatgtgctgagaatccagcg 323
Query: 61 aagtattttgcaaagctcttacgaaaggccatgaaaggtctaggcactgatgacaagaca 120
||||||||||| ||| | || | ||| |||||||||||||||| |||||||||||||||
Sbjct: 324 aagtattttgctaaggtgttgaggaagtccatgaaaggtctaggtactgatgacaagaca 383
Query: 121 cttataagggttgtggtgacgaggactgaaattgatatgcaatatatcaaggcagagtac 180
||| ||||||||||||| || |||||||| ||||||||||| |||||||||||||| ||
Sbjct: 384 cttgtaagggttgtggtaacaaggactgagattgatatgcagtatatcaaggcagaatat 443
Query: 181 ttcaagaagtataagaagccattagctgaggctatccactccgaaacatcaggaaactat 240
| |||||| || || ||||| |||||||| |||||||| |||||||||||||| |||
Sbjct: 444 tacaagaaatacaaaaagcctttagctgatgctatccattccgaaacatcaggcggttat 503
Query: 241 cggacattccttctttcacttgttggt 267
||||||||||| ||||| |||||||||
Sbjct: 504 cggacattcctgctttctcttgttggt 530
>gb|CK193343.1|CK193343 FGAS001757 Triticum aestivum FGAS: Library 3 Gate 6 Triticum
aestivum cDNA, mRNA sequence
Length = 789
Score = 228 bits (115), Expect = 4e-058
Identities = 229/267 (85%)
Strand = Plus / Plus
Query: 1 acatctggaaactttgaattcgcacttttagctatcctcagatgcgcggaaaacccagca 60
|||||||||||||||||| | || || ||| ||||||||||||| || || || |||||
Sbjct: 468 acatctggaaactttgaagttgctctgttaactatcctcagatgtgctgagaatccagcg 527
Query: 61 aagtattttgcaaagctcttacgaaaggccatgaaaggtctaggcactgatgacaagaca 120
||||||||||| ||| | || | ||| |||||||||||||||| |||||||||||||||
Sbjct: 528 aagtattttgctaaggtgttgaggaagtccatgaaaggtctaggtactgatgacaagaca 587
Query: 121 cttataagggttgtggtgacgaggactgaaattgatatgcaatatatcaaggcagagtac 180
||| ||||||||||||| || |||||||| ||||||||||| |||||||||||||| ||
Sbjct: 588 cttgtaagggttgtggtaacaaggactgagattgatatgcagtatatcaaggcagaatat 647
Query: 181 ttcaagaagtataagaagccattagctgaggctatccactccgaaacatcaggaaactat 240
| |||||| || || ||||| |||||||| |||||||| |||||||||||||| |||
Sbjct: 648 tacaagaaatacaaaaagcctttagctgatgctatccattccgaaacatcaggcggttat 707
Query: 241 cggacattccttctttcacttgttggt 267
||||||||||| ||||| |||||||||
Sbjct: 708 cggacattcctgctttctcttgttggt 734
>gb|BF474383.1|BF474383 WHE0843_D07_H13ZS Wheat vernalized crown cDNA library Triticum
aestivum cDNA clone WHE0843_D07_H13, mRNA sequence
Length = 611
Score = 212 bits (107), Expect = 2e-053
Identities = 227/267 (85%)
Strand = Plus / Plus
Query: 1 acatctggaaactttgaattcgcacttttagctatcctcagatgcgcggaaaacccagca 60
|||||||||||||||||| | || || ||| ||||||||||||| || || || |||||
Sbjct: 172 acatctggaaactttgaagttgctctgttaactatcctcagatgtgctgagaatccagcg 231
Query: 61 aagtattttgcaaagctcttacgaaaggccatgaaaggtctaggcactgatgacaagaca 120
||||||||||| ||| | || | ||| |||||||||||||||| |||||||||||||||
Sbjct: 232 aagtattttgctaaggtgttgaggaagtccatgaaaggtctaggtactgatgacaagaca 291
Query: 121 cttataagggttgtggtgacgaggactgaaattgatatgcaatatatcaaggcagagtac 180
||| ||||||||||||| || |||||||| ||||||||||| |||||||||||||| ||
Sbjct: 292 cttgtaagggttgtggtaacaaggactgagattgatatgcagtatatcaaggcagaatat 351
Query: 181 ttcaagaagtataagaagccattagctgaggctatccactccgaaacatcaggaaactat 240
| |||||| || || ||||| || ||||| |||||||| |||||||||||||| |||
Sbjct: 352 tacaagaaatacaaaaagccgttggctgatgctatccattccgaaacatcaggcggttat 411
Query: 241 cggacattccttctttcacttgttggt 267
||||| ||||| ||||| |||||||||
Sbjct: 412 cggacgttcctgctttctcttgttggt 438
>gb|CA603443.1|CA603443 wr1.pk0024.c4 wr1 Triticum aestivum cDNA clone wr1.pk0024.c4 5'
end, mRNA sequence
Length = 448
Score = 212 bits (107), Expect = 2e-053
Identities = 227/267 (85%)
Strand = Plus / Plus
Query: 1 acatctggaaactttgaattcgcacttttagctatcctcagatgcgcggaaaacccagca 60
|||||||||||||||||| | || || ||| ||||||||||||| || || || |||||
Sbjct: 85 acatctggaaactttgaagttgctctgttaactatcctcagatgtgctgagaatccagcg 144
Query: 61 aagtattttgcaaagctcttacgaaaggccatgaaaggtctaggcactgatgacaagaca 120
||||||||||| ||| | || | ||| |||||||||||||||| |||||||||||||||
Sbjct: 145 aagtattttgctaaggtgttgaggaagtccatgaaaggtctaggtactgatgacaagaca 204
Query: 121 cttataagggttgtggtgacgaggactgaaattgatatgcaatatatcaaggcagagtac 180
||| ||||||||||||| || |||||||| ||||||||||| |||||||||||||| ||
Sbjct: 205 cttgtaagggttgtggtaacaaggactgagattgatatgcagtatatcaaggcagaatat 264
Query: 181 ttcaagaagtataagaagccattagctgaggctatccactccgaaacatcaggaaactat 240
| |||||| || || ||||| || ||||| |||||||| |||||||||||||| |||
Sbjct: 265 tacaagaaatacaaaaagccgttggctgatgctatccattccgaaacatcaggcggttat 324
Query: 241 cggacattccttctttcacttgttggt 267
||||| ||||| ||||| |||||||||
Sbjct: 325 cggacgttcctgctttctcttgttggt 351
>gb|CN008072.1|CN008072 WHE2637_A09_A17ZE Wheat Fusarium graminearum infected spike cDNA
library Triticum aestivum cDNA clone WHE2637_A09_A17,
mRNA sequence
Length = 537
Score = 212 bits (107), Expect = 2e-053
Identities = 227/267 (85%)
Strand = Plus / Plus
Query: 1 acatctggaaactttgaattcgcacttttagctatcctcagatgcgcggaaaacccagca 60
|||||||||||||||||| | || || ||| ||||||||||||| || || || |||||
Sbjct: 15 acatctggaaactttgaagttgctctgttaactatcctcagatgtgctgagaatccagcg 74
Query: 61 aagtattttgcaaagctcttacgaaaggccatgaaaggtctaggcactgatgacaagaca 120
||||||||||| ||| | || | ||| |||||||||||||||| |||||||||||||||
Sbjct: 75 aagtattttgctaaggtgttgaggaagtccatgaaaggtctaggtactgatgacaagaca 134
Query: 121 cttataagggttgtggtgacgaggactgaaattgatatgcaatatatcaaggcagagtac 180
||| ||||||||||||| || |||||||| ||||||||||| |||||||||||||| ||
Sbjct: 135 cttgtaagggttgtggtaacaaggactgagattgatatgcagtatatcaaggcagaatat 194
Query: 181 ttcaagaagtataagaagccattagctgaggctatccactccgaaacatcaggaaactat 240
| |||||| || || ||||| || ||||| |||||||| |||||||||||||| |||
Sbjct: 195 tacaagaaatacaaaaagccgttggctgatgctatccattccgaaacatcaggcggttat 254
Query: 241 cggacattccttctttcacttgttggt 267
||||| ||||| ||||| |||||||||
Sbjct: 255 cggacgttcctgctttctcttgttggt 281
>gb|CV761162.1|CV761162 FGAS055550 Triticum aestivum FGAS: Library 2 Gate 3 Triticum
aestivum cDNA, mRNA sequence
Length = 840
Score = 204 bits (103), Expect = 6e-051
Identities = 226/267 (84%)
Strand = Plus / Plus
Query: 1 acatctggaaactttgaattcgcacttttagctatcctcagatgcgcggaaaacccagca 60
|||||||||||||||||| | || || ||| ||||||||||||| || || || |||||
Sbjct: 488 acatctggaaactttgaagttgctctgttaactatcctcagatgtgctgagaatccagcg 547
Query: 61 aagtattttgcaaagctcttacgaaaggccatgaaaggtctaggcactgatgacaagaca 120
||||||||||| ||| | || | ||| |||||||||||||||| |||||||||||||||
Sbjct: 548 aagtattttgctaaggtgttgaggaagtccatgaaaggtctaggtactgatgacaagaca 607
Query: 121 cttataagggttgtggtgacgaggactgaaattgatatgcaatatatcaaggcagagtac 180
||| ||||||||||||| || |||||||| ||||||||||| |||||||||||||| ||
Sbjct: 608 cttgtaagggttgtggtaacaaggactgagattgatatgcagtatatcaaggcagaatat 667
Query: 181 ttcaagaagtataagaagccattagctgaggctatccactccgaaacatcaggaaactat 240
| |||||| || || ||||| || ||||| |||||||| |||||||||||||| |||
Sbjct: 668 tacaagaaatacaaaaagccgttggctgatgctatccattccgaaacatcaggcggttat 727
Query: 241 cggacattccttctttcacttgttggt 267
||||| ||||| ||||| |||| ||||
Sbjct: 728 cggacgttcctgctttctcttggtggt 754
>gb|CA639168.1|CA639168 wre1n.pk0023.c12 wre1n Triticum aestivum cDNA clone
wre1n.pk0023.c12 5' end, mRNA sequence
Length = 576
Score = 145 bits (73), Expect = 4e-033
Identities = 193/229 (84%), Gaps = 3/229 (1%)
Strand = Plus / Plus
Query: 1 acatctggaaactttgaattcgcacttttagctatcctcagatgcgcggaaaacccagca 60
|||||||||||||||||| | || || ||| ||||||||||||| || || || |||||
Sbjct: 166 acatctggaaactttgaagttgctctgttaactatcctcagatgtgctgagaatccagcg 225
Query: 61 aagtattttgcaaagctcttacgaaaggccatgaaaggtctaggcactgatgacaagaca 120
||||||||||| ||| | || | || |||||||||||||||| |||||||||||||||
Sbjct: 226 aagtattttgctaaggtgttgaggaat-ccatgaaaggtctaggtactgatgacaagaca 284
Query: 121 cttataagggttgt-ggtgacgaggactgaaattgatatgcaatatatcaaggcagagta 179
||| |||||||||| ||| || |||||||| ||||||||||| |||||||||||||| ||
Sbjct: 285 cttgtaagggttgtgggtaacaaggactgagattgatatgcagtatatcaaggcagaata 344
Query: 180 cttcaagaagtataagaagccattagctgaggctatccactccgaaaca 228
| |||||| || || || || || ||||| |||||||| |||||||||
Sbjct: 345 ttacaagaaatacaa-aaaccgttggctgatgctatccattccgaaaca 392
>gb|CD452497.1|CD452497 WHE1107_B01_D01ZT CS wheat etiolated seedling root normalized cDNA
library Triticum aestivum cDNA clone WHE1107_B01_D01,
mRNA sequence
Length = 501
Score = 143 bits (72), Expect = 2e-032
Identities = 135/156 (86%)
Strand = Plus / Minus
Query: 112 gacaagacacttataagggttgtggtgacgaggactgaaattgatatgcaatatatcaag 171
|||||||||||| ||||||||||||| || |||||||| ||||||||||| |||||||||
Sbjct: 499 gacaagacacttgtaagggttgtggtaacaaggactgagattgatatgcagtatatcaag 440
Query: 172 gcagagtacttcaagaagtataagaagccattagctgaggctatccactccgaaacatca 231
||||| || | |||||| || || ||||| |||||||| |||||||| ||||||||||||
Sbjct: 439 gcagaatattacaagaaatacaaaaagcctttagctgatgctatccattccgaaacatca 380
Query: 232 ggaaactatcggacattccttctttcacttgttggt 267
|| |||||||||||||| ||||| || ||||||
Sbjct: 379 ggcggttatcggacattcctgctttctctggttggt 344
>gb|BE442892.1|BE442892 WHE1107_B01_D01ZS Wheat etiolated seedling root normalized cDNA
library Triticum aestivum cDNA clone WHE1107_B01_D01,
mRNA sequence
Length = 490
Score = 125 bits (63), Expect = 4e-027
Identities = 123/143 (86%)
Strand = Plus / Plus
Query: 125 taagggttgtggtgacgaggactgaaattgatatgcaatatatcaaggcagagtacttca 184
||||||||||||| || |||||||| ||||||||||| |||||||||||||| || | ||
Sbjct: 5 taagggttgtggtaacaaggactgagattgatatgcagtatatcaaggcagaatattaca 64
Query: 185 agaagtataagaagccattagctgaggctatccactccgaaacatcaggaaactatcgga 244
|||| || || ||||| |||||||| |||||||| |||||||||||||| |||||||
Sbjct: 65 agaaatacaaaaagcctttagctgatgctatccattccgaaacatcaggcggttatcgga 124
Query: 245 cattccttctttcacttgttggt 267
||||||| ||||| || ||||||
Sbjct: 125 cattcctgctttctctggttggt 147
>gb|CN012314.1|CN012314 WHE3895_C08_E15ZS Wheat Fusarium graminearum infected spike cDNA
library Triticum aestivum cDNA clone WHE3895_C08_E15,
mRNA sequence
Length = 526
Score = 123 bits (62), Expect = 2e-026
Identities = 132/154 (85%), Gaps = 1/154 (0%)
Strand = Plus / Plus
Query: 114 caagacacttataagggttgtggtgacgaggactgaaattgatatgcaatatatcaaggc 173
|||||||||| ||||||||||||| || |||||||| ||||||||||| |||||||||||
Sbjct: 13 caagacacttgtaagggttgtggtaac-aggactgagattgatatgcagtatatcaaggc 71
Query: 174 agagtacttcaagaagtataagaagccattagctgaggctatccactccgaaacatcagg 233
||| || | |||||| || || ||||| || ||||| |||||||| ||||||||||||||
Sbjct: 72 agaatattacaagaaatacaaaaagccgttggctgatgctatccattccgaaacatcagg 131
Query: 234 aaactatcggacattccttctttcacttgttggt 267
|||||||| ||||| ||||| |||||||||
Sbjct: 132 cggttatcggacgttcctgctttctcttgttggt 165
>gb|BE444251.1|BE444251 WHE1117_A02_A03ZS Wheat etiolated seedling root normalized cDNA
library Triticum aestivum cDNA clone WHE1117_A02_A03,
mRNA sequence
Length = 480
Score = 113 bits (57), Expect = 2e-023
Identities = 117/137 (85%)
Strand = Plus / Plus
Query: 131 ttgtggtgacgaggactgaaattgatatgcaatatatcaaggcagagtacttcaagaagt 190
||||||| || |||||||| ||||||||||| |||||||||||||| || | |||||| |
Sbjct: 1 ttgtggtaacaaggactgagattgatatgcagtatatcaaggcagaatattacaagaaat 60
Query: 191 ataagaagccattagctgaggctatccactccgaaacatcaggaaactatcggacattcc 250
| || ||||| |||||||| |||||||| |||||||||||||| |||||||||||||
Sbjct: 61 acaaaaagcctttagctgatgctatccattccgaaacatcaggcggttatcggacattcc 120
Query: 251 ttctttcacttgttggt 267
| ||||| || ||||||
Sbjct: 121 tgctttctctggttggt 137
>gb|CA618329.1|CA618329 wl1n.pk0032.b8 wl1n Triticum aestivum cDNA clone wl1n.pk0032.b8 5'
end, mRNA sequence
Length = 554
Score = 107 bits (54), Expect = 1e-021
Identities = 78/85 (91%), Gaps = 1/85 (1%)
Strand = Plus / Plus
Query: 92 tgaaaggtctaggcactgatgacaagacacttataagggttgtggtgacgaggactgaaa 151
||||||||||| | |||||||||||||||||| ||||||| |||||||| |||||||| |
Sbjct: 309 tgaaaggtctangtactgatgacaagacacttgtaagggt-gtggtgacaaggactgaga 367
Query: 152 ttgatatgcaatatatcaaggcaga 176
|||||||||| ||||||||||||||
Sbjct: 368 ttgatatgcagtatatcaaggcaga 392
>gb|CA606157.1|CA606157 wr1.pk0063.c8 wr1 Triticum aestivum cDNA clone wr1.pk0063.c8 5'
end, mRNA sequence
Length = 652
Score = 58.0 bits (29), Expect = 8e-007
Identities = 61/72 (84%)
Strand = Plus / Minus
Query: 196 aagccattagctgaggctatccactccgaaacatcaggaaactatcggacattccttctt 255
||||| || ||||| |||||||| |||||||||||||| |||||||| ||||| |||
Sbjct: 444 aagccgttggctgatgctatccattccgaaacatcaggcgnttatcggacgttcctgctt 385
Query: 256 tcacttgttggt 267
|| |||||||||
Sbjct: 384 tctcttgttggt 373
>gb|CD939676.1|CD939676 OV.114H20F010312 OV Triticum aestivum cDNA clone OV114H20, mRNA
sequence
Length = 385
Score = 58.0 bits (29), Expect = 8e-007
Identities = 50/57 (87%)
Strand = Plus / Plus
Query: 211 gctatccactccgaaacatcaggaaactatcggacattccttctttcacttgttggt 267
|||||||| |||||||||||||| |||||||||||||| ||||| |||||||||
Sbjct: 4 gctatccattccgaaacatcaggcggttatcggacattcctgctttctcttgttggt 60
Database: Triticum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 3:01 PM
Number of letters in database: 367,240,239
Number of sequences in database: 636,343
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 90,187
Number of Sequences: 636343
Number of extensions: 90187
Number of successful extensions: 21692
Number of sequences better than 0.5: 16
Number of HSP's better than 0.5 without gapping: 15
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 21665
Number of HSP's gapped (non-prelim): 18
length of query: 666
length of database: 367,240,239
effective HSP length: 19
effective length of query: 647
effective length of database: 355,149,722
effective search space: 229781870134
effective search space used: 229781870134
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)