BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3203826.2.1
(594 letters)
Database: Triticum_nucl_with_EST.fasta
636,343 sequences; 367,240,239 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CK164806.1|CK164806 FGAS048729 Triticum aestivum FGAS: T... 48 7e-004
gb|CD869470.1|CD869470 AZO2.111L18F001120 AZO2 Triticum aes... 46 0.003
gb|CK167492.1|CK167492 FGAS051864 Triticum aestivum FGAS: T... 42 0.043
gb|CK167579.1|CK167579 FGAS051973 Triticum aestivum FGAS: T... 42 0.043
gb|CK167664.1|CK167664 FGAS052073 Triticum aestivum FGAS: T... 42 0.043
gb|CK167771.1|CK167771 FGAS052200 Triticum aestivum FGAS: T... 42 0.043
>gb|CK164806.1|CK164806 FGAS048729 Triticum aestivum FGAS: TaLt7 Triticum aestivum cDNA,
mRNA sequence
Length = 874
Score = 48.1 bits (24), Expect = 7e-004
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 549 gctctgcatgatgtcgacggctgaaagatcgctctcgcagtcct 592
||||||||||||||||||||| |||| ||||| |||| |||||
Sbjct: 669 gctctgcatgatgtcgacggcgtaaaggtcgctgtcgccgtcct 712
>gb|CD869470.1|CD869470 AZO2.111L18F001120 AZO2 Triticum aestivum cDNA clone AZO2111L18,
mRNA sequence
Length = 383
Score = 46.1 bits (23), Expect = 0.003
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 498 cctccagattgcaccccacgaatgctgcatcggca 532
||||||||| || |||||||| |||||||||||||
Sbjct: 67 cctccagatagctccccacgagtgctgcatcggca 33
>gb|CK167492.1|CK167492 FGAS051864 Triticum aestivum FGAS: TaLt7 Triticum aestivum cDNA,
mRNA sequence
Length = 1170
Score = 42.1 bits (21), Expect = 0.043
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 549 gctctgcatgatgtcgacggc 569
|||||||||||||||||||||
Sbjct: 548 gctctgcatgatgtcgacggc 528
>gb|CK167579.1|CK167579 FGAS051973 Triticum aestivum FGAS: TaLt7 Triticum aestivum cDNA,
mRNA sequence
Length = 1197
Score = 42.1 bits (21), Expect = 0.043
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 549 gctctgcatgatgtcgacggc 569
|||||||||||||||||||||
Sbjct: 629 gctctgcatgatgtcgacggc 649
>gb|CK167664.1|CK167664 FGAS052073 Triticum aestivum FGAS: TaLt7 Triticum aestivum cDNA,
mRNA sequence
Length = 1219
Score = 42.1 bits (21), Expect = 0.043
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 549 gctctgcatgatgtcgacggc 569
|||||||||||||||||||||
Sbjct: 604 gctctgcatgatgtcgacggc 624
>gb|CK167771.1|CK167771 FGAS052200 Triticum aestivum FGAS: TaLt7 Triticum aestivum cDNA,
mRNA sequence
Length = 1137
Score = 42.1 bits (21), Expect = 0.043
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 549 gctctgcatgatgtcgacggc 569
|||||||||||||||||||||
Sbjct: 609 gctctgcatgatgtcgacggc 629
Database: Triticum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 3:01 PM
Number of letters in database: 367,240,239
Number of sequences in database: 636,343
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 113,601
Number of Sequences: 636343
Number of extensions: 113601
Number of successful extensions: 38108
Number of sequences better than 0.5: 6
Number of HSP's better than 0.5 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 38097
Number of HSP's gapped (non-prelim): 11
length of query: 594
length of database: 367,240,239
effective HSP length: 19
effective length of query: 575
effective length of database: 355,149,722
effective search space: 204211090150
effective search space used: 204211090150
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)