BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 3203826.2.1
         (594 letters)

Database: Triticum_nucl_with_EST.fasta 
           636,343 sequences; 367,240,239 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CK164806.1|CK164806  FGAS048729 Triticum aestivum FGAS: T...    48   7e-004
gb|CD869470.1|CD869470  AZO2.111L18F001120 AZO2 Triticum aes...    46   0.003
gb|CK167492.1|CK167492  FGAS051864 Triticum aestivum FGAS: T...    42   0.043
gb|CK167579.1|CK167579  FGAS051973 Triticum aestivum FGAS: T...    42   0.043
gb|CK167664.1|CK167664  FGAS052073 Triticum aestivum FGAS: T...    42   0.043
gb|CK167771.1|CK167771  FGAS052200 Triticum aestivum FGAS: T...    42   0.043
>gb|CK164806.1|CK164806 FGAS048729 Triticum aestivum FGAS: TaLt7 Triticum aestivum cDNA,
           mRNA sequence
          Length = 874

 Score = 48.1 bits (24), Expect = 7e-004
 Identities = 39/44 (88%)
 Strand = Plus / Plus

                                                       
Query: 549 gctctgcatgatgtcgacggctgaaagatcgctctcgcagtcct 592
           |||||||||||||||||||||  |||| ||||| |||| |||||
Sbjct: 669 gctctgcatgatgtcgacggcgtaaaggtcgctgtcgccgtcct 712
>gb|CD869470.1|CD869470 AZO2.111L18F001120 AZO2 Triticum aestivum cDNA clone AZO2111L18,
           mRNA sequence
          Length = 383

 Score = 46.1 bits (23), Expect = 0.003
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                              
Query: 498 cctccagattgcaccccacgaatgctgcatcggca 532
           ||||||||| || |||||||| |||||||||||||
Sbjct: 67  cctccagatagctccccacgagtgctgcatcggca 33
>gb|CK167492.1|CK167492 FGAS051864 Triticum aestivum FGAS: TaLt7 Triticum aestivum cDNA,
           mRNA sequence
          Length = 1170

 Score = 42.1 bits (21), Expect = 0.043
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 549 gctctgcatgatgtcgacggc 569
           |||||||||||||||||||||
Sbjct: 548 gctctgcatgatgtcgacggc 528
>gb|CK167579.1|CK167579 FGAS051973 Triticum aestivum FGAS: TaLt7 Triticum aestivum cDNA,
           mRNA sequence
          Length = 1197

 Score = 42.1 bits (21), Expect = 0.043
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 549 gctctgcatgatgtcgacggc 569
           |||||||||||||||||||||
Sbjct: 629 gctctgcatgatgtcgacggc 649
>gb|CK167664.1|CK167664 FGAS052073 Triticum aestivum FGAS: TaLt7 Triticum aestivum cDNA,
           mRNA sequence
          Length = 1219

 Score = 42.1 bits (21), Expect = 0.043
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 549 gctctgcatgatgtcgacggc 569
           |||||||||||||||||||||
Sbjct: 604 gctctgcatgatgtcgacggc 624
>gb|CK167771.1|CK167771 FGAS052200 Triticum aestivum FGAS: TaLt7 Triticum aestivum cDNA,
           mRNA sequence
          Length = 1137

 Score = 42.1 bits (21), Expect = 0.043
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 549 gctctgcatgatgtcgacggc 569
           |||||||||||||||||||||
Sbjct: 609 gctctgcatgatgtcgacggc 629
  Database: Triticum_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  3:01 PM
  Number of letters in database: 367,240,239
  Number of sequences in database:  636,343
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 113,601
Number of Sequences: 636343
Number of extensions: 113601
Number of successful extensions: 38108
Number of sequences better than  0.5: 6
Number of HSP's better than  0.5 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 38097
Number of HSP's gapped (non-prelim): 11
length of query: 594
length of database: 367,240,239
effective HSP length: 19
effective length of query: 575
effective length of database: 355,149,722
effective search space: 204211090150
effective search space used: 204211090150
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)