BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3092809.2.1
(652 letters)
Database: Triticum_nucl_with_EST.fasta
636,343 sequences; 367,240,239 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CA651727.1|CA651727 wre1n.pk179.e5 wre1n Triticum aestiv... 94 1e-017
gb|BE414217.1|BE414217 SCU007.E04.R990714 ITEC SCU Wheat En... 72 5e-011
gb|BQ606611.1|BQ606611 BRY_2476 wheat EST endosperm library... 72 5e-011
gb|CA706784.1|CA706784 wdk1c.pk020.f2 wdk1c Triticum aestiv... 64 1e-008
gb|CD454118.1|CD454118 WHE0974_C08_F16ZT CS wheat pre-anthe... 52 5e-005
gb|BJ248602.1|BJ248602 BJ248602 Y. Ogihara unpublished cDNA... 50 2e-004
gb|CD926685.1|CD926685 GR45.001M10F001019 GR45 Triticum aes... 50 2e-004
gb|CV765356.1|CV765356 FGAS059741 Triticum aestivum FGAS: L... 46 0.003
gb|BQ743557.1|BQ743557 WHE4105_D07_G13ZS Wheat salt-stresse... 42 0.047
>gb|CA651727.1|CA651727 wre1n.pk179.e5 wre1n Triticum aestivum cDNA clone wre1n.pk179.e5 5'
end, mRNA sequence
Length = 445
Score = 93.7 bits (47), Expect = 1e-017
Identities = 71/79 (89%)
Strand = Plus / Plus
Query: 282 aggacgtcgcccaggcggtgctctacctggccagcgacgaggcgaggtacgtcagcgcgg 341
|||| |||||| ||||||||||||||||||| |||||||| ||||||||| ||||||||
Sbjct: 115 aggatgtcgccgaggcggtgctctacctggcaagcgacgaagcgaggtacatcagcgcgc 174
Query: 342 tcaacctcatggtggacgg 360
|||||||| |||| |||||
Sbjct: 175 tcaacctcgtggtcgacgg 193
>gb|BE414217.1|BE414217 SCU007.E04.R990714 ITEC SCU Wheat Endosperm Library Triticum
aestivum cDNA clone SCU007.E04, mRNA sequence
Length = 682
Score = 71.9 bits (36), Expect = 5e-011
Identities = 81/96 (84%)
Strand = Plus / Plus
Query: 6 ccatcgtgtcgctggccagcgtggccagcgccatcggcgggacgggcccgcacgtctaca 65
||||||||||| |||| ||||||||| ||| |||| |||| ||||||||||| ||||
Sbjct: 473 ccatcgtgtcggtggcgagcgtggccggcgtgctcggtgggatgggcccgcacgcgtaca 532
Query: 66 cggcgtccaagcacgccgtggtcgggctcaccaaga 101
||||||| |||||||| |||| ||||| |||||||
Sbjct: 533 cggcgtcgaagcacgcgctggtggggctgaccaaga 568
>gb|BQ606611.1|BQ606611 BRY_2476 wheat EST endosperm library Triticum aestivum cDNA 5',
mRNA sequence
Length = 562
Score = 71.9 bits (36), Expect = 5e-011
Identities = 81/96 (84%)
Strand = Plus / Plus
Query: 6 ccatcgtgtcgctggccagcgtggccagcgccatcggcgggacgggcccgcacgtctaca 65
||||||||||| |||| ||||||||| ||| |||| |||| ||||||||||| ||||
Sbjct: 351 ccatcgtgtcggtggcgagcgtggccggcgtgctcggtgggatgggcccgcacgcgtaca 410
Query: 66 cggcgtccaagcacgccgtggtcgggctcaccaaga 101
||||||| |||||||| |||| ||||| |||||||
Sbjct: 411 cggcgtcgaagcacgcgctggtggggctgaccaaga 446
>gb|CA706784.1|CA706784 wdk1c.pk020.f2 wdk1c Triticum aestivum cDNA clone wdk1c.pk020.f2 5'
end, mRNA sequence
Length = 416
Score = 63.9 bits (32), Expect = 1e-008
Identities = 60/68 (88%), Gaps = 1/68 (1%)
Strand = Plus / Minus
Query: 294 aggcggtgctctacc-tggccagcgacgaggcgaggtacgtcagcgcggtcaacctcatg 352
||||||||||||||| |||| |||||||| | ||||||| |||||||| |||||||| ||
Sbjct: 380 aggcggtgctctaccttggcgagcgacgaagggaggtacatcagcgcgctcaacctcgtg 321
Query: 353 gtggacgg 360
|| |||||
Sbjct: 320 gtcgacgg 313
>gb|CD454118.1|CD454118 WHE0974_C08_F16ZT CS wheat pre-anthesis spike cDNA library Triticum
aestivum cDNA clone WHE0974_C08_F16, mRNA sequence
Length = 673
Score = 52.0 bits (26), Expect = 5e-005
Identities = 32/34 (94%)
Strand = Plus / Minus
Query: 105 tcgccgcggagctcggccgccacggggtgcgcgt 138
|||||| |||||| ||||||||||||||||||||
Sbjct: 564 tcgccggggagctgggccgccacggggtgcgcgt 531
>gb|BJ248602.1|BJ248602 BJ248602 Y. Ogihara unpublished cDNA library, Wh_f Triticum
aestivum cDNA clone whf7c11 5', mRNA sequence
Length = 609
Score = 50.1 bits (25), Expect = 2e-004
Identities = 52/61 (85%)
Strand = Plus / Plus
Query: 41 ggcgggacgggcccgcacgtctacacggcgtccaagcacgccgtggtcgggctcaccaag 100
||||||| ||||||||| | ||||||||||| |||||||| |||| ||||| ||||||
Sbjct: 17 ggcgggatgggcccgcatgcgtacacggcgtcgaagcacgcgctggtggggctgaccaag 76
Query: 101 a 101
|
Sbjct: 77 a 77
>gb|CD926685.1|CD926685 GR45.001M10F001019 GR45 Triticum aestivum cDNA clone GR45001M10,
mRNA sequence
Length = 718
Score = 50.1 bits (25), Expect = 2e-004
Identities = 70/85 (82%)
Strand = Plus / Plus
Query: 18 tggccagcgtggccagcgccatcggcgggacgggcccgcacgtctacacggcgtccaagc 77
|||| ||||| ||||| | |||||| |||| ||| || |||| ||||| ||||| ||||
Sbjct: 558 tggcgagcgttgccagtgtcatcggagggatggggcctcacgcatacaccgcgtcgaagc 617
Query: 78 acgccgtggtcgggctcaccaagag 102
|||| ||||| || |||||||||||
Sbjct: 618 acgcagtggtgggtctcaccaagag 642
>gb|CV765356.1|CV765356 FGAS059741 Triticum aestivum FGAS: Library 2 Gate 3 Triticum
aestivum cDNA, mRNA sequence
Length = 809
Score = 46.1 bits (23), Expect = 0.003
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 112 ggagctcggccgccacggggtgcgcgt 138
|||||| ||||||||||||||||||||
Sbjct: 768 ggagctgggccgccacggggtgcgcgt 794
>gb|BQ743557.1|BQ743557 WHE4105_D07_G13ZS Wheat salt-stressed root cDNA library Triticum
aestivum cDNA clone WHE4105_D07_G13, mRNA sequence
Length = 511
Score = 42.1 bits (21), Expect = 0.047
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 307 cctggccagcgacgaggcgaggtac 331
|||||||||||||||| ||||||||
Sbjct: 205 cctggccagcgacgagtcgaggtac 229
Database: Triticum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 3:01 PM
Number of letters in database: 367,240,239
Number of sequences in database: 636,343
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 169,182
Number of Sequences: 636343
Number of extensions: 169182
Number of successful extensions: 52342
Number of sequences better than 0.5: 9
Number of HSP's better than 0.5 without gapping: 8
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 52326
Number of HSP's gapped (non-prelim): 17
length of query: 652
length of database: 367,240,239
effective HSP length: 19
effective length of query: 633
effective length of database: 355,149,722
effective search space: 224809774026
effective search space used: 224809774026
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)