BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3064721.2.2
(595 letters)
Database: Triticum_nucl_with_EST.fasta
636,343 sequences; 367,240,239 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BE492753.1|BE492753 WHE0564_D04_D04ZE Triticum monococcu... 339 1e-091
gb|BE492933.1|BE492933 WHE0563_A11_A21ZE Triticum monococcu... 339 1e-091
gb|BJ292063.1|BJ292063 BJ292063 Y. Ogihara unpublished cDNA... 323 8e-087
gb|BJ298666.1|BJ298666 BJ298666 Y. Ogihara unpublished cDNA... 323 8e-087
gb|CD926381.1|CD926381 G750.121O11F010711 G750 Triticum aes... 139 2e-031
gb|CA599803.1|CA599803 waw1c.pk004.l9 waw1c Triticum aestiv... 135 4e-030
gb|BJ214350.1|BJ214350 BJ214350 Y. Ogihara unpublished cDNA... 88 8e-016
gb|BJ221838.1|BJ221838 BJ221838 Y. Ogihara unpublished cDNA... 88 8e-016
gb|BJ214352.1|BJ214352 BJ214352 Y. Ogihara unpublished cDNA... 80 2e-013
gb|BE500883.1|BE500883 WHE0991-0994_H16_H16ZS Wheat pre-ant... 54 1e-005
gb|CA497997.1|CA497997 WHE3237_C01_E01ZT Wheat meiotic anth... 54 1e-005
gb|CA498089.1|CA498089 WHE3238_C01_E02ZT Wheat meiotic anth... 54 1e-005
gb|CA498138.1|CA498138 WHE3239_C01_F01ZT Wheat meiotic anth... 54 1e-005
gb|CA725782.1|CA725782 wet1s.pk001.o13 wet1s Triticum aesti... 54 1e-005
gb|BE419385.1|BE419385 WWS01.D6R000101 ITEC WWS Wheat Scute... 48 7e-004
gb|BJ215342.1|BJ215342 BJ215342 Y. Ogihara unpublished cDNA... 48 7e-004
gb|BJ321656.1|BJ321656 BJ321656 Y. Ogihara unpublished cDNA... 48 7e-004
gb|BQ171061.1|BQ171061 WHE2322_C04_E08ZT Wheat pre-anthesis... 48 7e-004
gb|CK194696.1|CK194696 FGAS003127 Triticum aestivum FGAS: L... 48 7e-004
gb|CK196137.1|CK196137 FGAS004584 Triticum aestivum FGAS: L... 48 7e-004
gb|CV761089.1|CV761089 FGAS055477 Triticum aestivum FGAS: L... 46 0.003
gb|CA611719.1|CA611719 wr1.pk0134.e2 wr1 Triticum aestivum ... 42 0.043
gb|CA737426.1|CA737426 wpi2s.pk001.g16 wpi2s Triticum aesti... 40 0.17
gb|CA737807.1|CA737807 wpi2s.pk005.i1 wpi2s Triticum aestiv... 40 0.17
gb|CA738439.1|CA738439 wpi2s.pk006.d14 wpi2s Triticum aesti... 40 0.17
gb|CA739105.1|CA739105 wpi2s.pk009.d24 wpi2s Triticum aesti... 40 0.17
gb|CA739800.1|CA739800 wpi2s.pk010.b12 wpi2s Triticum aesti... 40 0.17
>gb|BE492753.1|BE492753 WHE0564_D04_D04ZE Triticum monococcum vegetative apex cDNA library
Triticum monococcum cDNA clone WHE0564_D04_D04, mRNA
sequence
Length = 590
Score = 339 bits (171), Expect = 1e-091
Identities = 303/347 (87%)
Strand = Plus / Plus
Query: 1 tgaacatgtttgatttgggcgactggagaaagcaaaacatcactgaggtctaccatacct 60
||||||||||||||||| || ||||||||||||||||||||||| |||||||| ||||
Sbjct: 62 tgaacatgtttgatttgtctgagtggagaaagcaaaacatcactgacgtctaccacacct 121
Query: 61 ggcagaagttgaatgaaaacaggctattgtggaagctaggtaccctccctgctggccttg 120
||||||| |||||||| |||||||| | ||||||||||| | ||||||||| |||||||
Sbjct: 122 ggcagaacctgaatgaagacaggctactatggaagctaggcagcctccctgcaggccttg 181
Query: 121 taaccttttggaaccgcacgttccctctcgatcgttcgtggcatcaattaggacttgggt 180
| || || ||||||||||||||||| |||||||| |||||||||| ||| || || ||||
Sbjct: 182 tgacgttctggaaccgcacgttccccctcgatcgctcgtggcatctattggggctcgggt 241
Query: 181 acaacccaaatgtcaacgttaaggatatcaggcgagcggctgtcatccactacaacggaa 240
|||||||||| ||||||| ||||| |||||||| || | ||||| |||||||||||||
Sbjct: 242 acaacccaaacgtcaacgagaaggagatcaggcgggcatccgtcattcactacaacggaa 301
Query: 241 acctgaagccctggcttgagattggattgccgaaataccgcaagtactggtcagcacacg 300
|||||||||||||||||||||| || || |||||||||| || |||||||| || |
Sbjct: 302 acctgaagccctggcttgagatcgggctgtcgaaataccgaaaatactggtcgcggcatg 361
Query: 301 tcaattacgatcaagtgtttctacgggagtgcaacataaacccctga 347
|||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 362 tcaattacgatcaagtgtttatacgggagtgcaacataaacccctga 408
>gb|BE492933.1|BE492933 WHE0563_A11_A21ZE Triticum monococcum vegetative apex cDNA library
Triticum monococcum cDNA clone WHE0563_A11_A21, mRNA
sequence
Length = 522
Score = 339 bits (171), Expect = 1e-091
Identities = 303/347 (87%)
Strand = Plus / Plus
Query: 1 tgaacatgtttgatttgggcgactggagaaagcaaaacatcactgaggtctaccatacct 60
||||||||||||||||| || ||||||||||||||||||||||| |||||||| ||||
Sbjct: 63 tgaacatgtttgatttgtctgagtggagaaagcaaaacatcactgacgtctaccacacct 122
Query: 61 ggcagaagttgaatgaaaacaggctattgtggaagctaggtaccctccctgctggccttg 120
||||||| |||||||| |||||||| | ||||||||||| | ||||||||| |||||||
Sbjct: 123 ggcagaacctgaatgaagacaggctactatggaagctaggcagcctccctgcaggccttg 182
Query: 121 taaccttttggaaccgcacgttccctctcgatcgttcgtggcatcaattaggacttgggt 180
| || || ||||||||||||||||| |||||||| |||||||||| ||| || || ||||
Sbjct: 183 tgacgttctggaaccgcacgttccccctcgatcgctcgtggcatctattggggctcgggt 242
Query: 181 acaacccaaatgtcaacgttaaggatatcaggcgagcggctgtcatccactacaacggaa 240
|||||||||| ||||||| ||||| |||||||| || | ||||| |||||||||||||
Sbjct: 243 acaacccaaacgtcaacgagaaggagatcaggcgggcatccgtcattcactacaacggaa 302
Query: 241 acctgaagccctggcttgagattggattgccgaaataccgcaagtactggtcagcacacg 300
|||||||||||||||||||||| || || |||||||||| || |||||||| || |
Sbjct: 303 acctgaagccctggcttgagatcgggctgtcgaaataccgaaaatactggtcgcggcatg 362
Query: 301 tcaattacgatcaagtgtttctacgggagtgcaacataaacccctga 347
|||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 363 tcaattacgatcaagtgtttatacgggagtgcaacataaacccctga 409
>gb|BJ292063.1|BJ292063 BJ292063 Y. Ogihara unpublished cDNA library, Wh_SL Triticum
aestivum cDNA clone whsl26d08 5', mRNA sequence
Length = 650
Score = 323 bits (163), Expect = 8e-087
Identities = 301/347 (86%)
Strand = Plus / Plus
Query: 1 tgaacatgtttgatttgggcgactggagaaagcaaaacatcactgaggtctaccatacct 60
||||||||||||||||| ||| |||||||||||||||||||| || |||||||| ||||
Sbjct: 133 tgaacatgtttgatttgtccgagtggagaaagcaaaacatcaccgacgtctaccacacct 192
Query: 61 ggcagaagttgaatgaaaacaggctattgtggaagctaggtaccctccctgctggccttg 120
||||||| |||||||| |||||||| | ||||||||||| | ||||||||| |||||||
Sbjct: 193 ggcagaacctgaatgaagacaggctactatggaagctaggcagcctccctgcaggccttg 252
Query: 121 taaccttttggaaccgcacgttccctctcgatcgttcgtggcatcaattaggacttgggt 180
| || |||||||||||||||||||| || ||||| |||||||||| | || || ||||
Sbjct: 253 tgacgttttggaaccgcacgttcccgcttgatcgctcgtggcatcttctggggctcgggt 312
Query: 181 acaacccaaatgtcaacgttaaggatatcaggcgagcggctgtcatccactacaacggaa 240
|||||||||| ||||||| ||||| |||||||| || | ||||| |||||||||||||
Sbjct: 313 acaacccaaacgtcaacgagaaggagatcaggcgggcatccgtcattcactacaacggaa 372
Query: 241 acctgaagccctggcttgagattggattgccgaaataccgcaagtactggtcagcacacg 300
||||||| |||||||| ||||| |||||| |||||||||| || |||||||| || |
Sbjct: 373 acctgaaaccctggctcgagatcggattgtcgaaataccgaaaatactggtcgcggcatg 432
Query: 301 tcaattacgatcaagtgtttctacgggagtgcaacataaacccctga 347
|||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 433 tcaattacgatcaagtgtttatacgggagtgcaacataaacccctga 479
>gb|BJ298666.1|BJ298666 BJ298666 Y. Ogihara unpublished cDNA library, Wh_SL Triticum
aestivum cDNA clone whsl26d08 3', mRNA sequence
Length = 432
Score = 323 bits (163), Expect = 8e-087
Identities = 301/347 (86%)
Strand = Plus / Minus
Query: 1 tgaacatgtttgatttgggcgactggagaaagcaaaacatcactgaggtctaccatacct 60
||||||||||||||||| ||| |||||||||||||||||||| || |||||||| ||||
Sbjct: 356 tgaacatgtttgatttgtccgagtggagaaagcaaaacatcaccgacgtctaccacacct 297
Query: 61 ggcagaagttgaatgaaaacaggctattgtggaagctaggtaccctccctgctggccttg 120
||||||| |||||||| |||||||| | ||||||||||| | ||||||||| |||||||
Sbjct: 296 ggcagaacctgaatgaagacaggctactatggaagctaggcagcctccctgcaggccttg 237
Query: 121 taaccttttggaaccgcacgttccctctcgatcgttcgtggcatcaattaggacttgggt 180
| || |||||||||||||||||||| || ||||| |||||||||| | || || ||||
Sbjct: 236 tgacgttttggaaccgcacgttcccgcttgatcgctcgtggcatcttctggggctcgggt 177
Query: 181 acaacccaaatgtcaacgttaaggatatcaggcgagcggctgtcatccactacaacggaa 240
|||||||||| ||||||| ||||| |||||||| || | ||||| |||||||||||||
Sbjct: 176 acaacccaaacgtcaacgagaaggagatcaggcgggcatccgtcattcactacaacggaa 117
Query: 241 acctgaagccctggcttgagattggattgccgaaataccgcaagtactggtcagcacacg 300
||||||| |||||||| ||||| |||||| |||||||||| || |||||||| || |
Sbjct: 116 acctgaaaccctggctcgagatcggattgtcgaaataccgaaaatactggtcgcggcatg 57
Query: 301 tcaattacgatcaagtgtttctacgggagtgcaacataaacccctga 347
|||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 56 tcaattacgatcaagtgtttatacgggagtgcaacataaacccctga 10
>gb|CD926381.1|CD926381 G750.121O11F010711 G750 Triticum aestivum cDNA clone G750121O11,
mRNA sequence
Length = 538
Score = 139 bits (70), Expect = 2e-031
Identities = 133/154 (86%)
Strand = Plus / Plus
Query: 1 tgaacatgtttgatttgggcgactggagaaagcaaaacatcactgaggtctaccatacct 60
||||||||| ||||||| ||| |||||||||||||||||||| || |||||||| ||||
Sbjct: 381 tgaacatgtatgatttgtccgagtggagaaagcaaaacatcaccgacgtctaccagacct 440
Query: 61 ggcagaagttgaatgaaaacaggctattgtggaagctaggtaccctccctgctggccttg 120
||||||| ||||||| |||||||| | ||||||||||| | ||||||||| |||||||
Sbjct: 441 ggcagaacctgaatgacgacaggctactatggaagctaggcagcctccctgcaggccttg 500
Query: 121 taaccttttggaaccgcacgttccctctcgatcg 154
| || ||| |||||||||||||||| || |||||
Sbjct: 501 tgacgtttgggaaccgcacgttcccgcttgatcg 534
>gb|CA599803.1|CA599803 waw1c.pk004.l9 waw1c Triticum aestivum cDNA clone waw1c.pk004.l9 5'
end, mRNA sequence
Length = 663
Score = 135 bits (68), Expect = 4e-030
Identities = 121/140 (86%)
Strand = Plus / Plus
Query: 1 tgaacatgtttgatttgggcgactggagaaagcaaaacatcactgaggtctaccatacct 60
||||||||||||||||| ||| |||||||||||||||||||| || |||||||| ||||
Sbjct: 524 tgaacatgtttgatttgtccgagtggagaaagcaaaacatcaccgacgtctaccacacct 583
Query: 61 ggcagaagttgaatgaaaacaggctattgtggaagctaggtaccctccctgctggccttg 120
||||||| |||||||| |||||||| | ||||||||||| | ||||||||| ||||
Sbjct: 584 ggcagaacctgaatgaagacaggctactatggaagctaggcagcctccctgcnnnncttg 643
Query: 121 taaccttttggaaccgcacg 140
| || |||||||||||||||
Sbjct: 644 tgacgttttggaaccgcacg 663
>gb|BJ214350.1|BJ214350 BJ214350 Y. Ogihara unpublished cDNA library, Wh Triticum aestivum
cDNA clone wh26p15 5', mRNA sequence
Length = 143
Score = 87.7 bits (44), Expect = 8e-016
Identities = 47/48 (97%)
Strand = Plus / Plus
Query: 300 gtcaattacgatcaagtgtttctacgggagtgcaacataaacccctga 347
||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 22 gtcaattacgatcaagtgtttatacgggagtgcaacataaacccctga 69
>gb|BJ221838.1|BJ221838 BJ221838 Y. Ogihara unpublished cDNA library, Wh Triticum aestivum
cDNA clone wh26p15 3', mRNA sequence
Length = 104
Score = 87.7 bits (44), Expect = 8e-016
Identities = 47/48 (97%)
Strand = Plus / Minus
Query: 300 gtcaattacgatcaagtgtttctacgggagtgcaacataaacccctga 347
||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 93 gtcaattacgatcaagtgtttatacgggagtgcaacataaacccctga 46
>gb|BJ214352.1|BJ214352 BJ214352 Y. Ogihara unpublished cDNA library, Wh Triticum aestivum
cDNA clone wh26p17 5', mRNA sequence
Length = 152
Score = 79.8 bits (40), Expect = 2e-013
Identities = 46/48 (95%)
Strand = Plus / Plus
Query: 300 gtcaattacgatcaagtgtttctacgggagtgcaacataaacccctga 347
|||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct: 31 gtcaattacgataaagtgtttatacgggagtgcaacataaacccctga 78
>gb|BE500883.1|BE500883 WHE0991-0994_H16_H16ZS Wheat pre-anthesis spike cDNA library
Triticum aestivum cDNA clone WHE0991-0994_H16_H16, mRNA
sequence
Length = 376
Score = 54.0 bits (27), Expect = 1e-005
Identities = 39/43 (90%)
Strand = Plus / Minus
Query: 222 gtcatccactacaacggaaacctgaagccctggcttgagattg 264
||||||||||||||||| ||| ||||||| ||||| |||||||
Sbjct: 140 gtcatccactacaacgggaacatgaagccgtggctggagattg 98
Score = 40.1 bits (20), Expect = 0.17
Identities = 38/44 (86%)
Strand = Plus / Minus
Query: 51 taccatacctggcagaagttgaatgaaaacaggctattgtggaa 94
||||||| |||||||| |||||||||||||||| |||||||
Sbjct: 311 taccataagtggcagaacatgaatgaaaacaggctgctgtggaa 268
>gb|CA497997.1|CA497997 WHE3237_C01_E01ZT Wheat meiotic anther cDNA library Triticum
aestivum cDNA clone WHE3237_C01_E01, mRNA sequence
Length = 573
Score = 54.0 bits (27), Expect = 1e-005
Identities = 39/43 (90%)
Strand = Plus / Plus
Query: 222 gtcatccactacaacggaaacctgaagccctggcttgagattg 264
||||||||||||||||| ||| ||||||| ||||| |||||||
Sbjct: 358 gtcatccactacaacgggaacatgaagccgtggctggagattg 400
Score = 40.1 bits (20), Expect = 0.17
Identities = 38/44 (86%)
Strand = Plus / Plus
Query: 51 taccatacctggcagaagttgaatgaaaacaggctattgtggaa 94
||||||| |||||||| |||||||||||||||| |||||||
Sbjct: 187 taccataagtggcagaacatgaatgaaaacaggctgctgtggaa 230
>gb|CA498089.1|CA498089 WHE3238_C01_E02ZT Wheat meiotic anther cDNA library Triticum
aestivum cDNA clone WHE3238_C01_E02, mRNA sequence
Length = 683
Score = 54.0 bits (27), Expect = 1e-005
Identities = 39/43 (90%)
Strand = Plus / Plus
Query: 222 gtcatccactacaacggaaacctgaagccctggcttgagattg 264
||||||||||||||||| ||| ||||||| ||||| |||||||
Sbjct: 352 gtcatccactacaacgggaacatgaagccgtggctggagattg 394
Score = 40.1 bits (20), Expect = 0.17
Identities = 38/44 (86%)
Strand = Plus / Plus
Query: 51 taccatacctggcagaagttgaatgaaaacaggctattgtggaa 94
||||||| |||||||| |||||||||||||||| |||||||
Sbjct: 181 taccataagtggcagaacatgaatgaaaacaggctgctgtggaa 224
>gb|CA498138.1|CA498138 WHE3239_C01_F01ZT Wheat meiotic anther cDNA library Triticum
aestivum cDNA clone WHE3239_C01_F01, mRNA sequence
Length = 710
Score = 54.0 bits (27), Expect = 1e-005
Identities = 39/43 (90%)
Strand = Plus / Plus
Query: 222 gtcatccactacaacggaaacctgaagccctggcttgagattg 264
||||||||||||||||| ||| ||||||| ||||| |||||||
Sbjct: 377 gtcatccactacaacgggaacatgaagccgtggctggagattg 419
Score = 40.1 bits (20), Expect = 0.17
Identities = 38/44 (86%)
Strand = Plus / Plus
Query: 51 taccatacctggcagaagttgaatgaaaacaggctattgtggaa 94
||||||| |||||||| |||||||||||||||| |||||||
Sbjct: 206 taccataagtggcagaacatgaatgaaaacaggctgctgtggaa 249
>gb|CA725782.1|CA725782 wet1s.pk001.o13 wet1s Triticum aestivum cDNA clone wet1s.pk001.o13
5' end, mRNA sequence
Length = 318
Score = 54.0 bits (27), Expect = 1e-005
Identities = 39/43 (90%)
Strand = Plus / Plus
Query: 222 gtcatccactacaacggaaacctgaagccctggcttgagattg 264
||||||||||||||||| ||| ||||||| ||||| |||||||
Sbjct: 156 gtcatccactacaacgggaacatgaagccgtggctggagattg 198
>gb|BE419385.1|BE419385 WWS01.D6R000101 ITEC WWS Wheat Scutellum Library Triticum aestivum
cDNA clone WWS01.D6, mRNA sequence
Length = 331
Score = 48.1 bits (24), Expect = 7e-004
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 222 gtcatccactacaacggaaacctgaagccctggcttgagattgg 265
||||| || ||||| || ||| ||||||||||||||||||||||
Sbjct: 13 gtcatacattacaatggcaacatgaagccctggcttgagattgg 56
>gb|BJ215342.1|BJ215342 BJ215342 Y. Ogihara unpublished cDNA library, Wh Triticum aestivum
cDNA clone wh6k21 3', mRNA sequence
Length = 625
Score = 48.1 bits (24), Expect = 7e-004
Identities = 39/44 (88%)
Strand = Plus / Minus
Query: 222 gtcatccactacaacggaaacctgaagccctggcttgagattgg 265
||||| || ||||| || ||| ||||||||||||||||||||||
Sbjct: 266 gtcatacattacaatggcaacatgaagccctggcttgagattgg 223
>gb|BJ321656.1|BJ321656 BJ321656 Y. Ogihara unpublished cDNA library, Wh_yf Triticum
aestivum cDNA clone whyf21m18 3', mRNA sequence
Length = 636
Score = 48.1 bits (24), Expect = 7e-004
Identities = 39/44 (88%)
Strand = Plus / Minus
Query: 222 gtcatccactacaacggaaacctgaagccctggcttgagattgg 265
||||| || ||||| || ||| ||||||||||||||||||||||
Sbjct: 446 gtcatacattacaatggcaacatgaagccctggcttgagattgg 403
>gb|BQ171061.1|BQ171061 WHE2322_C04_E08ZT Wheat pre-anthesis spike cDNA library Triticum
aestivum cDNA clone WHE2322_C04_E08, mRNA sequence
Length = 516
Score = 48.1 bits (24), Expect = 7e-004
Identities = 39/44 (88%)
Strand = Plus / Minus
Query: 222 gtcatccactacaacggaaacctgaagccctggcttgagattgg 265
||||| || ||||| || ||| ||||||||||||||||||||||
Sbjct: 472 gtcatacattacaatggcaacatgaagccctggcttgagattgg 429
>gb|CK194696.1|CK194696 FGAS003127 Triticum aestivum FGAS: Library 3 Gate 6 Triticum
aestivum cDNA, mRNA sequence
Length = 804
Score = 48.1 bits (24), Expect = 7e-004
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 222 gtcatccactacaacggaaacctgaagccctggcttgagattgg 265
||||| || ||||| || ||| ||||||||||||||||||||||
Sbjct: 604 gtcatacattacaatggcaacatgaagccctggcttgagattgg 647
>gb|CK196137.1|CK196137 FGAS004584 Triticum aestivum FGAS: Library 3 Gate 6 Triticum
aestivum cDNA, mRNA sequence
Length = 868
Score = 48.1 bits (24), Expect = 7e-004
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 222 gtcatccactacaacggaaacctgaagccctggcttgagattgg 265
||||| || ||||| || ||| ||||||||||||||||||||||
Sbjct: 532 gtcatacattacaatggcaacatgaagccctggcttgagattgg 575
>gb|CV761089.1|CV761089 FGAS055477 Triticum aestivum FGAS: Library 2 Gate 3 Triticum
aestivum cDNA, mRNA sequence
Length = 823
Score = 46.1 bits (23), Expect = 0.003
Identities = 50/59 (84%)
Strand = Plus / Plus
Query: 51 taccatacctggcagaagttgaatgaaaacaggctattgtggaagctaggtaccctccc 109
||||||| |||||||| |||||||||||||||| ||||||| || || ||||||||
Sbjct: 668 taccataagtggcagaacatgaatgaaaacaggctgctgtggaaactggggaccctccc 726
>gb|CA611719.1|CA611719 wr1.pk0134.e2 wr1 Triticum aestivum cDNA clone wr1.pk0134.e2 5'
end, mRNA sequence
Length = 659
Score = 42.1 bits (21), Expect = 0.043
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 222 gtcatccactacaacggaaacctgaagcc 250
||||||||||||||||| ||| |||||||
Sbjct: 396 gtcatccactacaacgggaacatgaagcc 368
>gb|CA737426.1|CA737426 wpi2s.pk001.g16 wpi2s Triticum aestivum cDNA clone wpi2s.pk001.g16
5' end, mRNA sequence
Length = 556
Score = 40.1 bits (20), Expect = 0.17
Identities = 38/44 (86%)
Strand = Plus / Plus
Query: 222 gtcatccactacaacggaaacctgaagccctggcttgagattgg 265
||||| || ||||| || ||| ||||||| ||||||||||||||
Sbjct: 17 gtcatacattacaatggcaacatgaagccatggcttgagattgg 60
>gb|CA737807.1|CA737807 wpi2s.pk005.i1 wpi2s Triticum aestivum cDNA clone wpi2s.pk005.i1 5'
end, mRNA sequence
Length = 491
Score = 40.1 bits (20), Expect = 0.17
Identities = 38/44 (86%)
Strand = Plus / Minus
Query: 222 gtcatccactacaacggaaacctgaagccctggcttgagattgg 265
||||| || ||||| || ||| ||||||| ||||||||||||||
Sbjct: 452 gtcatacattacaatggcaacatgaagccatggcttgagattgg 409
>gb|CA738439.1|CA738439 wpi2s.pk006.d14 wpi2s Triticum aestivum cDNA clone wpi2s.pk006.d14
5' end, mRNA sequence
Length = 499
Score = 40.1 bits (20), Expect = 0.17
Identities = 38/44 (86%)
Strand = Plus / Plus
Query: 222 gtcatccactacaacggaaacctgaagccctggcttgagattgg 265
||||| || ||||| || ||| ||||||| ||||||||||||||
Sbjct: 39 gtcatacattacaatggcaacatgaagccatggcttgagattgg 82
>gb|CA739105.1|CA739105 wpi2s.pk009.d24 wpi2s Triticum aestivum cDNA clone wpi2s.pk009.d24
5' end, mRNA sequence
Length = 491
Score = 40.1 bits (20), Expect = 0.17
Identities = 38/44 (86%)
Strand = Plus / Minus
Query: 222 gtcatccactacaacggaaacctgaagccctggcttgagattgg 265
||||| || ||||| || ||| ||||||| ||||||||||||||
Sbjct: 452 gtcatacattacaatggcaacatgaagccatggcttgagattgg 409
>gb|CA739800.1|CA739800 wpi2s.pk010.b12 wpi2s Triticum aestivum cDNA clone wpi2s.pk010.b12
5' end, mRNA sequence
Length = 490
Score = 40.1 bits (20), Expect = 0.17
Identities = 38/44 (86%)
Strand = Plus / Minus
Query: 222 gtcatccactacaacggaaacctgaagccctggcttgagattgg 265
||||| || ||||| || ||| ||||||| ||||||||||||||
Sbjct: 452 gtcatacattacaatggcaacatgaagccatggcttgagattgg 409
Database: Triticum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 3:01 PM
Number of letters in database: 367,240,239
Number of sequences in database: 636,343
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 81,420
Number of Sequences: 636343
Number of extensions: 81420
Number of successful extensions: 20710
Number of sequences better than 0.5: 27
Number of HSP's better than 0.5 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 20672
Number of HSP's gapped (non-prelim): 32
length of query: 595
length of database: 367,240,239
effective HSP length: 19
effective length of query: 576
effective length of database: 355,149,722
effective search space: 204566239872
effective search space used: 204566239872
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)