BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2969966.2.1
(1029 letters)
Database: Triticum_nucl_with_EST.fasta
636,343 sequences; 367,240,239 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CK206694.1|CK206694 FGAS018298 Triticum aestivum FGAS: L... 628 e-178
gb|CF134265.1|CF134265 WHE4369_H02_P03ZT Wheat meiotic flor... 321 5e-086
gb|AL815412.1|AL815412 AL815412 j:223 Triticum aestivum cDN... 168 5e-040
gb|CA725677.1|CA725677 wet1s.pk001.c2 wet1s Triticum aestiv... 90 4e-016
gb|CB307722.1|CB307722 HFIG707 Hessian fly infested cDNA li... 82 9e-014
gb|BJ303602.1|BJ303602 BJ303602 Y. Ogihara unpublished cDNA... 64 2e-008
gb|BJ303630.1|BJ303630 BJ303630 Y. Ogihara unpublished cDNA... 64 2e-008
gb|CK210581.1|CK210581 FGAS022403 Triticum aestivum FGAS: L... 52 8e-005
gb|BG263404.1|BG263404 WHE2341_F02_K03ZS Wheat pre-anthesis... 48 0.001
gb|BQ620865.1|BQ620865 TaLr1101F04R TaLr1 Triticum aestivum... 42 0.075
gb|BF478757.1|BF478757 WHE2013_C06_E11ZS Chinese Spring whe... 40 0.30
gb|BJ207721.1|BJ207721 BJ207721 Y. Ogihara unpublished cDNA... 40 0.30
gb|BJ249132.1|BJ249132 BJ249132 Y. Ogihara unpublished cDNA... 40 0.30
gb|CA708480.1|CA708480 wdk2c.pk009.l21 wdk2c Triticum aesti... 40 0.30
>gb|CK206694.1|CK206694 FGAS018298 Triticum aestivum FGAS: Library 5 GATE 7 Triticum
aestivum cDNA, mRNA sequence
Length = 1034
Score = 628 bits (317), Expect = e-178
Identities = 739/878 (84%), Gaps = 4/878 (0%)
Strand = Plus / Plus
Query: 21 actggctggagtgtgtttgtcagtgctaagagacttgttgctggagattctgtgctattc 80
||||||||||||||||| || || || || |||| ||||||||||| || ||||| |||
Sbjct: 87 actggctggagtgtgttcgttagcgccaaaagacgagttgctggagactcggtgctcttc 146
Query: 81 atatggaatgagaaaaaccagcttttgcttggaatcagacacgctacccggccacagact 140
|||||||| |||||||||||||||| ||| |||||||| | || | |||| ||||||||
Sbjct: 147 atatggaacgagaaaaaccagctttggctaggaatcaggcgtgccaaccggacacagact 206
Query: 141 gtgatgccctcttctgttctttcgagtgacagcatgcacatcggactccttgcagcagca 200
|||||||| || ||||||||||||||||||||||||||||| || ||||||||||| ||
Sbjct: 207 gtgatgccttcctctgttctttcgagtgacagcatgcacatagggctccttgcagctgcg 266
Query: 201 gctcatgctgctgcaacaaacagccgcttcacaattttctataatcctagggcaagtcca 260
|||||||||||| | |||||||||||||||||||||||||| ||||| |||||| |||||
Sbjct: 267 gctcatgctgcttctacaaacagccgcttcacaattttctacaatccgagggcatgtcca 326
Query: 261 acagaatttgttatacccctttcgaaatacatcaaggctgtttttcacacgcggatatca 320
|||||||||| ||||| || || || ||||||||||||||||||||||| ||||||||
Sbjct: 327 tcagaatttgtcataccactctcaaagtacatcaaggctgtttttcacacccggatatcg 386
Query: 321 gttgggatgcgattcaggatgttatttgagactgaggaatcaagtgtccgcaggtacatg 380
|| || ||||| ||||||||| | |||||||| |||||||| ||||| ||||||||||||
Sbjct: 387 gtcggcatgcggttcaggatgctctttgagaccgaggaatctagtgttcgcaggtacatg 446
Query: 381 gggacaataacagaagtgagtgatgctgacccagtgcgttggcctagttcctattggaga 440
||||||||||||||||| ||||||||||| |||||||||||| |||||||||| ||||||
Sbjct: 447 gggacaataacagaagtaagtgatgctgatccagtgcgttgggctagttcctactggaga 506
Query: 441 tcagtgaaggttggttgggatgaatcaaccgcaggagaaaggccacctagagtttctctg 500
|| || ||||||||||||||||||||||| || || ||||| || |||||||||||| |
Sbjct: 507 tcggttaaggttggttgggatgaatcaactgctggggaaagaccgcctagagtttcttta 566
Query: 501 tgggaaattgagccactgacaacctttcctatgtatccatccctgttcccactgcgagtt 560
||||| ||||| ||| |||||||||| ||||||||||| || ||| || ||| | |||
Sbjct: 567 tgggagattgaaccattgacaaccttccctatgtatccgtcattgtntccgctgagggtt 626
Query: 561 aagcatccttggtattcaggacttgctgctcttcatgatgacagcaatgctttgatgtgg 620
|||||||| |||||||| || | || | ||||| ||||||||||||||||||||||||
Sbjct: 627 aagcatccctggtattctggtgtagcaggccttcaagatgacagcaatgctttgatgtgg 686
Query: 621 ctgagaggagtaaccggtgaagggggctttcattcttcgaacttccagtcacctggtata 680
||||||||||| | || || || || | ||| ||| |||||| ||||||||||||||
Sbjct: 687 ctgagaggagttgctggagatggaggttatcagtctatgaactttcagtcacctggtatt 746
Query: 681 ggttcctggggacaacagagactccatccatccttacttagcaatgaccatgatcagtat 740
|| ||||||||||||||||| |||||||| || || | || | || |||||||||||
Sbjct: 747 ggctcctggggacaacagaggctccatccttctttgatgagtacggagcatgatcagtac 806
Query: 741 caagcagtggttgctgccgcagctgc---ctcccagtccggtggttatctgaagcagcaa 797
| |||||| |||||||| || || || || |||||| ||||| ||| |||| || |||
Sbjct: 807 ccagcagtagttgctgctgctgccgccggcttccagtctggtgggtatatgaaacaacaa 866
Query: 798 ttcctacaccttcaacaacctatgcagtccccacaggagcagtgcaatctcaatccgctg 857
| |||| ||||||| || ||||||||| | || || || || ||||| ||| | ||| ||
Sbjct: 867 tccctaaaccttcagcagcctatgcagccgcctcaagaacactgcaa-ctccaaccggtg 925
Query: 858 ttgcagcaacaaatactacagcaagcgagccaacagca 895
||||||||||| || | ||||||| |||||||||||
Sbjct: 926 ttgcagcaacagattttggagcaagcaagccaacagca 963
>gb|CF134265.1|CF134265 WHE4369_H02_P03ZT Wheat meiotic floret cDNA library Triticum
aestivum cDNA clone WHE4369_H02_P03, mRNA sequence
Length = 755
Score = 321 bits (162), Expect = 5e-086
Identities = 273/310 (88%)
Strand = Plus / Plus
Query: 21 actggctggagtgtgtttgtcagtgctaagagacttgttgctggagattctgtgctattc 80
|||||||||||||||||||| || || || ||||| ||||||||||| || ||||| |||
Sbjct: 446 actggctggagtgtgtttgttagcgccaaaagactagttgctggagactcagtgctcttc 505
Query: 81 atatggaatgagaaaaaccagcttttgcttggaatcagacacgctacccggccacagact 140
|||||||| |||||||||||||||| ||| |||||||| | || | |||| ||||||||
Sbjct: 506 atatggaacgagaaaaaccagctttggctaggaatcaggcgtgccaaccggacacagact 565
Query: 141 gtgatgccctcttctgttctttcgagtgacagcatgcacatcggactccttgcagcagca 200
|||||||| || ||||||||||||||||||||||||||||| || ||||||||||| ||
Sbjct: 566 gtgatgccttcctctgttctttcgagtgacagcatgcacatagggctccttgcagctgcg 625
Query: 201 gctcatgctgctgcaacaaacagccgcttcacaattttctataatcctagggcaagtcca 260
|||||||||||| | |||||||||||||||||||||||||| ||||| |||||| |||||
Sbjct: 626 gctcatgctgcttctacaaacagccgcttcacaattttctacaatccgagggcatgtcca 685
Query: 261 acagaatttgttatacccctttcgaaatacatcaaggctgtttttcacacgcggatatca 320
|||||||||| ||||| || || || ||||||||||||||||||||||| ||||||||
Sbjct: 686 tcagaatttgtcataccactctcaaagtacatcaaggctgtttttcacacccggatatcg 745
Query: 321 gttgggatgc 330
||||| ||||
Sbjct: 746 gttggcatgc 755
>gb|AL815412.1|AL815412 AL815412 j:223 Triticum aestivum cDNA clone E12_j223_plate_4, mRNA
sequence
Length = 239
Score = 168 bits (85), Expect = 5e-040
Identities = 187/221 (84%)
Strand = Plus / Plus
Query: 411 ccagtgcgttggcctagttcctattggagatcagtgaaggttggttgggatgaatcaacc 470
|||||||||||| |||||||||| |||||||| || |||||||||||||||||||||||
Sbjct: 3 ccagtgcgttgggctagttcctactggagatcggttaaggttggttgggatgaatcaact 62
Query: 471 gcaggagaaaggccacctagagtttctctgtgggaaattgagccactgacaacctttcct 530
|| || ||||| || |||||||||||| | ||||| ||||| ||| |||||||||| |||
Sbjct: 63 gctggggaaagaccgcctagagtttctttatgggagattgaaccattgacaaccttccct 122
Query: 531 atgtatccatccctgttcccactgcgagttaagcatccttggtattcaggacttgctgct 590
|||||||| || ||| || ||| | ||||||||||| | |||||| || | || |
Sbjct: 123 atgtatccgtcattgtatccgctgagggttaagcatccctagtattctggtgtagcaggc 182
Query: 591 cttcatgatgacagcaatgctttgatgtggctgagaggagt 631
||||| |||||| ||||||||||||||||||||||||||||
Sbjct: 183 cttcaagatgaccgcaatgctttgatgtggctgagaggagt 223
>gb|CA725677.1|CA725677 wet1s.pk001.c2 wet1s Triticum aestivum cDNA clone wet1s.pk001.c2 5'
end, mRNA sequence
Length = 422
Score = 89.7 bits (45), Expect = 4e-016
Identities = 87/101 (86%)
Strand = Plus / Minus
Query: 144 atgccctcttctgttctttcgagtgacagcatgcacatcggactccttgcagcagcagct 203
||||| |||||||| || || || ||||||||||| || || || |||||||||||||||
Sbjct: 258 atgccgtcttctgtgctgtcaagcgacagcatgcatataggccttcttgcagcagcagct 199
Query: 204 catgctgctgcaacaaacagccgcttcacaattttctataa 244
|||||||| || |||||||| || ||||| |||||||||||
Sbjct: 198 catgctgcggccacaaacagtcgtttcactattttctataa 158
>gb|CB307722.1|CB307722 HFIG707 Hessian fly infested cDNA library Triticum aestivum cDNA,
mRNA sequence
Length = 724
Score = 81.8 bits (41), Expect = 9e-014
Identities = 95/113 (84%)
Strand = Plus / Plus
Query: 165 agtgacagcatgcacatcggactccttgcagcagcagctcatgctgctgcaacaaacagc 224
|||||||||||||| || || || ||||| ||||| ||||||||||| ||||||| |||
Sbjct: 64 agtgacagcatgcatattggtcttcttgctgcagctgctcatgctgcatcaacaaatagc 123
Query: 225 cgcttcacaattttctataatcctagggcaagtccaacagaatttgttatacc 277
|| ||||| |||||||||||||| || ||||| || |||| ||||| |||||
Sbjct: 124 cggttcactattttctataatccaagagcaagcccttcagagtttgtcatacc 176
>gb|BJ303602.1|BJ303602 BJ303602 Y. Ogihara unpublished cDNA library, Wh_yd Triticum
aestivum cDNA clone whyd20f11 5', mRNA sequence
Length = 628
Score = 63.9 bits (32), Expect = 2e-008
Identities = 59/68 (86%)
Strand = Plus / Plus
Query: 144 atgccctcttctgttctttcgagtgacagcatgcacatcggactccttgcagcagcagct 203
||||| |||||||| || || || ||||||||||| || || || |||||||||||||||
Sbjct: 557 atgccgtcttctgtgctgtcaagcgacagcatgcatataggccttcttgcagcagcagct 616
Query: 204 catgctgc 211
||||||||
Sbjct: 617 catgctgc 624
>gb|BJ303630.1|BJ303630 BJ303630 Y. Ogihara unpublished cDNA library, Wh_yd Triticum
aestivum cDNA clone whyd20h09 5', mRNA sequence
Length = 623
Score = 63.9 bits (32), Expect = 2e-008
Identities = 59/68 (86%)
Strand = Plus / Plus
Query: 144 atgccctcttctgttctttcgagtgacagcatgcacatcggactccttgcagcagcagct 203
||||| |||||||| || || || ||||||||||| || || || |||||||||||||||
Sbjct: 556 atgccgtcttctgtgctgtcaagcgacagcatgcatataggccttcttgcagcagcagct 615
Query: 204 catgctgc 211
||||||||
Sbjct: 616 catgctgc 623
>gb|CK210581.1|CK210581 FGAS022403 Triticum aestivum FGAS: Library 5 GATE 7 Triticum
aestivum cDNA, mRNA sequence
Length = 1127
Score = 52.0 bits (26), Expect = 8e-005
Identities = 116/146 (79%)
Strand = Plus / Plus
Query: 840 tgcaatctcaatccgctgttgcagcaacaaatactacagcaagcgagccaacagcagatg 899
||||| ||||| ||||| ||||||||||| || | |||||||| |||||||| || |
Sbjct: 88 tgcaacctcaacccgctcttgcagcaacagatcttgcagcaagcaagccaacaacaaacc 147
Query: 900 gttagttctgatgctcaaaatattcagtccgtgctcaacccaggtgctattcagcagcag 959
|||||| ||||| ||| ||||||||| | |||| ||| || ||||||| ||||| ||
Sbjct: 148 gttagtgctgatagtcagaatattcaggcaatgctgaactcaagtgctatgcagcaccaa 207
Query: 960 ctccaccaactccagcagatgcagca 985
|| || || |||||||| |||||||
Sbjct: 208 cttcaacagctccagcaactgcagca 233
>gb|BG263404.1|BG263404 WHE2341_F02_K03ZS Wheat pre-anthesis spike cDNA library Triticum
aestivum cDNA clone WHE2341_F02_K03, mRNA sequence
Length = 395
Score = 48.1 bits (24), Expect = 0.001
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 444 gtgaaggttggttgggatgaatcaaccgcaggagaaaggc 483
||||||||||| |||||||||||||| || ||||| ||||
Sbjct: 62 gtgaaggttggctgggatgaatcaactgctggagagaggc 101
>gb|BQ620865.1|BQ620865 TaLr1101F04R TaLr1 Triticum aestivum cDNA clone TaLr1101F04R,
mRNA sequence
Length = 551
Score = 42.1 bits (21), Expect = 0.075
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 1 tccaaagaattcggcacgacactgg 25
||||||||||||||||||| |||||
Sbjct: 6 tccaaagaattcggcacgagactgg 30
>gb|BF478757.1|BF478757 WHE2013_C06_E11ZS Chinese Spring wheat drought stressed leaf cDNA
library Triticum aestivum cDNA clone WHE2013_C06_E11,
mRNA sequence
Length = 508
Score = 40.1 bits (20), Expect = 0.30
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 188 ccttgcagcagcagctcatg 207
||||||||||||||||||||
Sbjct: 41 ccttgcagcagcagctcatg 22
>gb|BJ207721.1|BJ207721 BJ207721 Y. Ogihara unpublished cDNA library, Wh Triticum aestivum
cDNA clone wh5b03 5', mRNA sequence
Length = 551
Score = 40.1 bits (20), Expect = 0.30
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 10 ttcggcacgacactggctgg 29
||||||||||||||||||||
Sbjct: 428 ttcggcacgacactggctgg 409
>gb|BJ249132.1|BJ249132 BJ249132 Y. Ogihara unpublished cDNA library, Wh_f Triticum
aestivum cDNA clone whf23i15 5', mRNA sequence
Length = 367
Score = 40.1 bits (20), Expect = 0.30
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 447 aaggttggttgggatgaatcaaccgcaggaga 478
|||||||| |||||||||||||| || |||||
Sbjct: 102 aaggttggctgggatgaatcaactgctggaga 133
>gb|CA708480.1|CA708480 wdk2c.pk009.l21 wdk2c Triticum aestivum cDNA clone
wdk2c.pk009.l21 5' end, mRNA sequence
Length = 516
Score = 40.1 bits (20), Expect = 0.30
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 10 ttcggcacgacactggctgg 29
||||||||||||||||||||
Sbjct: 38 ttcggcacgacactggctgg 19
Database: Triticum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 3:01 PM
Number of letters in database: 367,240,239
Number of sequences in database: 636,343
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 268,897
Number of Sequences: 636343
Number of extensions: 268897
Number of successful extensions: 86033
Number of sequences better than 0.5: 14
Number of HSP's better than 0.5 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 86002
Number of HSP's gapped (non-prelim): 27
length of query: 1029
length of database: 367,240,239
effective HSP length: 20
effective length of query: 1009
effective length of database: 354,513,379
effective search space: 357703999411
effective search space used: 357703999411
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)