BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2950225.2.1
(3330 letters)
Database: Triticum_nucl_with_EST.fasta
636,343 sequences; 367,240,239 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CA623472.1|CA623472 wl1n.pk0105.c2 wl1n Triticum aestivu... 511 e-143
gb|BE417613.1|BE417613 MUG022.G12R990620 ITEC MUG Wheat Spi... 410 e-112
gb|CA621622.1|CA621622 wl1n.pk0075.g9 wl1n Triticum aestivu... 359 8e-097
gb|CA621163.1|CA621163 wl1n.pk0072.f12 wl1n Triticum aestiv... 295 1e-077
gb|CA612646.1|CA612646 wr1.pk0138.g2 wr1 Triticum aestivum ... 127 5e-027
gb|CF133398.1|CF133398 WHE4357_E10_J19ZT Wheat meiotic flor... 86 2e-014
gb|BU100218.1|BU100218 WHE3316_F04_L08ZS Chinese Spring whe... 80 1e-012
gb|BG606256.1|BG606256 WHE2962_F04_L08ZS Wheat dormant embr... 70 1e-009
gb|BJ254180.1|BJ254180 BJ254180 Y. Ogihara unpublished cDNA... 70 1e-009
gb|CA593288.1|CA593288 wpa1c.pk003.d18 wpa1c Triticum aesti... 70 1e-009
gb|CK195481.1|CK195481 FGAS003920 Triticum aestivum FGAS: L... 70 1e-009
gb|CV763955.1|CV763955 FGAS058338 Triticum aestivum FGAS: L... 70 1e-009
gb|DR739349.1|DR739349 FGAS084566 Triticum aestivum FGAS: L... 70 1e-009
gb|CD490605.1|CD490605 WHE2962_F04_L08ZT Brevor wheat dorma... 68 4e-009
gb|CD874259.1|CD874259 AZO3.101L21F010928 AZO3 Triticum aes... 68 4e-009
gb|CK163854.1|CK163854 FGAS016490 Triticum aestivum FGAS: L... 68 4e-009
gb|BJ248053.1|BJ248053 BJ248053 Y. Ogihara unpublished cDNA... 64 7e-008
gb|BE517739.1|BE517739 WHE0802_D03_G06ZS Wheat vernalized c... 62 3e-007
gb|CD911643.1|CD911643 G550.111L22F010521 G550 Triticum aes... 62 3e-007
gb|CK201762.1|CK201762 FGAS010282 Triticum aestivum FGAS: L... 62 3e-007
gb|AJ615961.1|AJ615961 AJ615961 Triticum turgidum subsp. du... 62 3e-007
gb|BJ303508.1|BJ303508 BJ303508 Y. Ogihara unpublished cDNA... 54 6e-005
gb|BJ309155.1|BJ309155 BJ309155 Y. Ogihara unpublished cDNA... 54 6e-005
gb|BJ309382.1|BJ309382 BJ309382 Y. Ogihara unpublished cDNA... 54 6e-005
gb|CV771120.1|CV771120 FGAS065513 Triticum aestivum FGAS: L... 54 6e-005
gb|BJ303289.1|BJ303289 BJ303289 Y. Ogihara unpublished cDNA... 48 0.004
gb|CK211085.1|CK211085 FGAS022913 Triticum aestivum FGAS: L... 48 0.004
gb|CA608721.1|CA608721 wr1.pk0093.h2 wr1 Triticum aestivum ... 46 0.016
gb|BE404374.1|BE404374 WHE0441_D11_G21ZS Wheat etiolated se... 44 0.062
gb|BJ269645.1|BJ269645 BJ269645 Y. Ogihara unpublished cDNA... 44 0.062
gb|BJ211119.1|BJ211119 BJ211119 Y. Ogihara unpublished cDNA... 42 0.25
gb|BJ232561.1|BJ232561 BJ232561 Y. Ogihara unpublished cDNA... 42 0.25
gb|AL817387.1|AL817387 AL817387 j:324 Triticum aestivum cDN... 42 0.25
gb|CK194769.1|CK194769 FGAS003201 Triticum aestivum FGAS: L... 42 0.25
>gb|CA623472.1|CA623472 wl1n.pk0105.c2 wl1n Triticum aestivum cDNA clone wl1n.pk0105.c2 5'
end, mRNA sequence
Length = 650
Score = 511 bits (258), Expect = e-143
Identities = 326/343 (95%), Gaps = 5/343 (1%)
Strand = Plus / Minus
Query: 1385 tgatgcttaaaccgatgccagtaccacc-ataattcctt-gaagttgaactgtcagcctg 1442
|||||||||||||| | | |||||| || |||||||||| ||||||||| ||||||| ||
Sbjct: 342 tgatgcttaaaccgttncnagtaccgcccataattcctttgaagttgaantgtcagcttg 283
Query: 1443 cataaacggtgtaaaaacacga-tcttgtgcttgcagtggtatcccgacacctgtgtcct 1501
| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 282 cttaaacggtgtaaaaacacgaatcttgtgcttgcagtggtatcccgacacctgtgtcct 223
Query: 1502 caatacttattgctagtgtgacacgatctgaatcactttgattagagttttcgccctcaa 1561
||||||||||||||||||||||| ||| |||||||||||||||||| |||||||||||||
Sbjct: 222 caatacttattgctagtgtgacatgatttgaatcactttgattaga-ttttcgccctcaa 164
Query: 1562 gatcatcc-aaaagcgactccttatcagagaggagcagtttaaaatattgccaactattt 1620
|||||||| ||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 163 gatcatcccaaaagtgactccttatcggagaggagcagtttaaaatattgccaactattt 104
Query: 1621 cgtctgtctgctgcttcaaacccactcaaagtattgaaggcaccattagctgttgactca 1680
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 103 cgtctgtctgctgcttcaaacccactcaaagtattgaaggcaccattagttgttgactca 44
Query: 1681 actctaccacctttgccattcatggctccatgtaggacctgat 1723
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43 actctaccacctttgccattcatggctccatgtaggacctgat 1
>gb|BE417613.1|BE417613 MUG022.G12R990620 ITEC MUG Wheat Spikelet Library Triticum aestivum
cDNA clone MUG022.G12, mRNA sequence
Length = 480
Score = 410 bits (207), Expect = e-112
Identities = 369/423 (87%)
Strand = Plus / Minus
Query: 2464 tctgaagcatttgtgacatcatagacatttaccacaatatcctgattgccagcaagtttg 2523
||||||||||||||||| ||||| ||||| |||| |||||||||||||||||||||||
Sbjct: 424 tctgaagcatttgtgacgtcatacacattcaccaatatatcctgattgccagcaagttta 365
Query: 2524 ctcaacaaattctccacaagtgactccacatcaaaggctccaccgagatatccgatagtt 2583
|||| |||||| ||||||||||||||||||||||| |||||||| ||||| || ||||
Sbjct: 364 ctcagcaaattttccacaagtgactccacatcaaaagctccaccaagatagccagcagtt 305
Query: 2584 gcttccacacgttgctcaactgatgcatcagcagggagatcagggcggtacacagcaaac 2643
||||||||||||||||||||||||||||||||||| ||||||||||| ||||| |||||
Sbjct: 304 gcttccacacgttgctcaactgatgcatcagcaggtagatcagggcgatacactgcaaaa 245
Query: 2644 gtgagaactactcccaagtggtttgatccaagcaaccgaaatgggtttgttaacacagct 2703
||||| ||||| ||||||||||| || ||||| | ||||||||||||||||||||||| |
Sbjct: 244 gtgagtactacgcccaagtggttcgacccaagaagccgaaatgggtttgttaacacaggt 185
Query: 2704 ttgccagtagtcctggcccggaaaatgttttctcggtcctcctccccagacatcatgtca 2763
|||||||| ||| || || || |||||||||||||||||||||||||||||||||||
Sbjct: 184 ttgccagtttccctcgcacgcaagatgttttctcggtcctcctccccagacatcatgtcc 125
Query: 2764 atgcgtgcaaggtaggaaaccgtatcctgagagaaaatcactggggcgtattcaacctgc 2823
||||| ||||||||||| ||||||||||| ||||||||||| ||||| || ||| | ||
Sbjct: 124 atgcgcgcaaggtaggagaccgtatcctgggagaaaatcaccggggcatactcatcttgg 65
Query: 2824 ggaggtgcaggctcccgctgcatcgtattcataacccatccctgctggctttcaaacatt 2883
||||||||| ||| || | ||| || |||||| |||||| ||||| ||||||||| ||
Sbjct: 64 agaggtgcagcctctcgattcatagtcctcataatccatccatgctgtctttcaaacgtt 5
Query: 2884 tcc 2886
|||
Sbjct: 4 tcc 2
>gb|CA621622.1|CA621622 wl1n.pk0075.g9 wl1n Triticum aestivum cDNA clone wl1n.pk0075.g9 5'
end, mRNA sequence
Length = 396
Score = 359 bits (181), Expect = 8e-097
Identities = 294/323 (91%), Gaps = 7/323 (2%)
Strand = Plus / Minus
Query: 1403 cagtaccaccataattccttgaagttgaactgtcagcctgcataaacggtgtaaaaacac 1462
|||| || ||||||| | | ||||||||| ||||||| ||| ||||||||||||||||||
Sbjct: 318 cagtnccgccataatccttggaagttgaa-tgtcagcttgcttaaacggtgtaaaaacac 260
Query: 1463 gatcttgtgcttgcagtggtatcccgacacctgtgtcctcaatacttattgctagtgtga 1522
|| || ||| |||||||||||||| | ||||||| |||||||| |||||||||||||||
Sbjct: 259 ganct-gtg-ttgcagtggtatccgggaacctgtg-cctcaataattattgctagtgtga 203
Query: 1523 cacgatctgaatcactttgattagagttttcgccctcaa-gatcatccaaaagcgactcc 1581
|| | | || ||||||||| |||| ||||||||||||| ||||||||||||| || |||
Sbjct: 202 catggtttggatcactttggttaggattttcgccctcaaagatcatccaaaagtga-tcc 144
Query: 1582 ttatcag-agaggagcagtttaaaatattgccaactatttcgtctgtctgctgcttcaaa 1640
||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143 ttatcgggagaggagcagtttaaaatattgccaactatttcgtctgtctgctgcttcaaa 84
Query: 1641 cccactcaaagtattgaaggcaccattagctgttgactcaactctaccacctttgccatt 1700
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 83 cccactcaaagtattgaaggcaccattagttgttgactcaactctaccacctttgccatt 24
Query: 1701 catggctccatgtaggacctgat 1723
|||||||||||||||||||||||
Sbjct: 23 catggctccatgtaggacctgat 1
>gb|CA621163.1|CA621163 wl1n.pk0072.f12 wl1n Triticum aestivum cDNA clone wl1n.pk0072.f12 5'
end, mRNA sequence
Length = 618
Score = 295 bits (149), Expect = 1e-077
Identities = 188/198 (94%), Gaps = 3/198 (1%)
Strand = Plus / Minus
Query: 1379 acttgctgatgcttaaaccg-atgccagtaccaccataattccttg-aagttgaactgtc 1436
||||||||||| |||||||| ||||||||||| ||||||||||||| |||||||| ||||
Sbjct: 201 acttgctgatgnttaaaccggatgccagtaccgccataattccttggaagttgaa-tgtc 143
Query: 1437 agcctgcataaacggtgtaaaaacacgatcttgtgcttgcagtggtatcccgacacctgt 1496
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142 agcctgcataaacggtgtaaaaacacgatcttgtgcttgcagtggtatcccgacacctgt 83
Query: 1497 gtcctcaatacttattgctagtgtgacacgatctgaatcactttgattagagttttcgcc 1556
|||||||||| |||||| |||||||||| ||| |||||||||||||||||| ||||||||
Sbjct: 82 gtcctcaatanttattgntagtgtgacatgatttgaatcactttgattagaattttcgcc 23
Query: 1557 ctcaagatcatccaaaag 1574
||||||||||||||||||
Sbjct: 22 ctcaagatcatccaaaag 5
>gb|CA612646.1|CA612646 wr1.pk0138.g2 wr1 Triticum aestivum cDNA clone wr1.pk0138.g2 5'
end, mRNA sequence
Length = 433
Score = 127 bits (64), Expect = 5e-027
Identities = 127/148 (85%)
Strand = Plus / Minus
Query: 539 tttcctcgttcgctttcaactccatttgccttatttgtccggttgcctcaaacccgtcca 598
||||||||||||||||| |||||||| | |||||||| || ||||| ||||| ||||
Sbjct: 155 tttcctcgttcgctttcttctccatttctcgtatttgtctagtagcctcgaacccatcca 96
Query: 599 tctctggcatctgaacatccataaaacatgcatcgaagcgatgcgggggttgaagtagac 658
|||| ||||| ||||| |||||||||||||||| ||||| ||| || |||||||||||
Sbjct: 95 tctcaggcatttgaacgtccataaaacatgcatggaagcaatgtggaggttgaagtaggg 36
Query: 659 tgatagcatccttgccgctttcaacaca 686
||||||||||||||| |||||||||||
Sbjct: 35 agatagcatccttgccactttcaacaca 8
Score = 109 bits (55), Expect = 1e-021
Identities = 128/151 (84%), Gaps = 1/151 (0%)
Strand = Plus / Minus
Query: 338 ccgaatctgtcgttcccactaccaatctggagactgcttggtatagct-gctcctcgtcg 396
||||||| || |||||||| || ||||||||||| ||||||||||||| ||| |||||||
Sbjct: 357 ccgaatcagttgttcccaccactaatctggagaccgcttggtatagcttgctgctcgtcg 298
Query: 397 aagggtttagatacgtatccatccattcccgattttatgcactcttcgtaagttgcctgg 456
|| ||||| || || || |||||||| |||||||| || ||||||||||| || |||||
Sbjct: 297 aacggtttggacacatagccatccatccccgatttcatacactcttcgtaggtcgcctga 238
Query: 457 ataacatcggctgtcattgccagaacaggca 487
|| || || || |||||||| ||||||||||
Sbjct: 237 atgacgtcagccgtcattgcaagaacaggca 207
>gb|CF133398.1|CF133398 WHE4357_E10_J19ZT Wheat meiotic floret cDNA library Triticum aestivum
cDNA clone WHE4357_E10_J19, mRNA sequence
Length = 760
Score = 85.7 bits (43), Expect = 2e-014
Identities = 85/99 (85%)
Strand = Plus / Minus
Query: 2101 agcatatccagcattccaaggacgccattcataggtgttctgatctcatgtgacgcagtt 2160
|||||||| |||||||| || || || ||||| ||||| ||||||||||| || |||||
Sbjct: 757 agcatatcaagcattcctagcacaccgttcatgggtgtcctgatctcatgagaaacagtt 698
Query: 2161 gccaggaactgagattttgcaacatcagcagcttctgcc 2199
|| ||||||||||| || ||||||||||| |||||||||
Sbjct: 697 gcaaggaactgagacttagcaacatcagcggcttctgcc 659
Score = 65.9 bits (33), Expect = 2e-008
Identities = 87/105 (82%)
Strand = Plus / Minus
Query: 2473 tttgtgacatcatagacatttaccacaatatcctgattgccagcaagtttgctcaacaaa 2532
|||||||||||||| ||||| ||||| | |||||||||||||| || | | || ||||
Sbjct: 385 tttgtgacatcataaacattcaccaccagctcctgattgccagctagctgccgcagcaaa 326
Query: 2533 ttctccacaagtgactccacatcaaaggctccaccgagatatccg 2577
|| |||||||||||||| ||||| || || || || |||||||||
Sbjct: 325 ttttccacaagtgactctacatcgaaagcgcctccaagatatccg 281
>gb|BU100218.1|BU100218 WHE3316_F04_L08ZS Chinese Spring wheat drought stressed root cDNA
library Triticum aestivum cDNA clone WHE3316_F04_L08,
mRNA sequence
Length = 686
Score = 79.8 bits (40), Expect = 1e-012
Identities = 85/100 (85%)
Strand = Plus / Minus
Query: 2096 ctaaaagcatatccagcattccaaggacgccattcataggtgttctgatctcatgtgacg 2155
|||| |||||||| |||||||| || || || ||||| ||||| ||||||||||| ||
Sbjct: 383 ctaatagcatatcaagcattcctagcacaccgttcatgggtgtcctgatctcatgagaaa 324
Query: 2156 cagttgccaggaactgagattttgcaacatcagcagcttc 2195
||||||| ||||||||||| || ||||||||||| |||||
Sbjct: 323 cagttgcaaggaactgagacttagcaacatcagcggcttc 284
>gb|BG606256.1|BG606256 WHE2962_F04_L08ZS Wheat dormant embryo cDNA library Triticum aestivum
cDNA clone WHE2962_F04_L08, mRNA sequence
Length = 528
Score = 69.9 bits (35), Expect = 1e-009
Identities = 71/83 (85%)
Strand = Plus / Minus
Query: 2473 tttgtgacatcatagacatttaccacaatatcctgattgccagcaagtttgctcaacaaa 2532
|||||||||||||| ||||| ||||| | |||||||||||||| || | | |||||||
Sbjct: 212 tttgtgacatcataaacattcaccaccagctcctgattgccagctagctgccgcaacaaa 153
Query: 2533 ttctccacaagtgactccacatc 2555
|| |||||||||||||| |||||
Sbjct: 152 ttttccacaagtgactctacatc 130
Score = 46.1 bits (23), Expect = 0.016
Identities = 35/39 (89%)
Strand = Plus / Minus
Query: 2157 agttgccaggaactgagattttgcaacatcagcagcttc 2195
|||||| ||||||||||| || ||||||||||| |||||
Sbjct: 528 agttgcaaggaactgagacttagcaacatcagcggcttc 490
>gb|BJ254180.1|BJ254180 BJ254180 Y. Ogihara unpublished cDNA library, Wh_f Triticum
aestivum cDNA clone whf4l08 3', mRNA sequence
Length = 581
Score = 69.9 bits (35), Expect = 1e-009
Identities = 47/51 (92%)
Strand = Plus / Plus
Query: 570 tatttgtccggttgcctcaaacccgtccatctctggcatctgaacatccat 620
|||||| | ||||||||||||||| ||||||||||||||||||| ||||||
Sbjct: 494 tatttgccgggttgcctcaaacccatccatctctggcatctgaatatccat 544
Score = 67.9 bits (34), Expect = 4e-009
Identities = 82/98 (83%)
Strand = Plus / Plus
Query: 382 agctgctcctcgtcgaagggtttagatacgtatccatccattcccgattttatgcactct 441
||||||| ||| || |||||||| || ||||| ||||||||||| | ||| |||| ||
Sbjct: 300 agctgcttctcctcaaagggtttcgagacgtagccatccattccatactttgtgcattcc 359
Query: 442 tcgtaagttgcctggataacatcggctgtcattgccag 479
|| | ||| ||||||||||||||||| |||||||||||
Sbjct: 360 tcatgagtggcctggataacatcggcagtcattgccag 397
>gb|CA593288.1|CA593288 wpa1c.pk003.d18 wpa1c Triticum aestivum cDNA clone wpa1c.pk003.d18 5'
end, mRNA sequence
Length = 591
Score = 69.9 bits (35), Expect = 1e-009
Identities = 104/127 (81%)
Strand = Plus / Minus
Query: 2929 agcagcggtcgctcaaatgatgtccttgccgtgtattttgcaaaggtgtcctggtcgatg 2988
|||||||| ||||| || || |||| |||||||| | || ||||||||||||||||
Sbjct: 128 agcagcgggcgctcgaaggacgtccgcgccgtgtagtccgcgaaggtgtcctggtcgagc 69
Query: 2989 gctggaggggacttctcgaagttgaaggtggagatgagaatggcgatggcgtggacgtgg 3048
|| || || ||||||| ||| |||||||| || ||| ||||||| |||||||||||||
Sbjct: 68 gcgggcggctgcttctcgtagtggaaggtggcgacgaggatggcgagggcgtggacgtgg 9
Query: 3049 ttgacgg 3055
|||||||
Sbjct: 8 ttgacgg 2
>gb|CK195481.1|CK195481 FGAS003920 Triticum aestivum FGAS: Library 3 Gate 6 Triticum aestivum
cDNA, mRNA sequence
Length = 809
Score = 69.9 bits (35), Expect = 1e-009
Identities = 62/71 (87%)
Strand = Plus / Minus
Query: 2125 ccattcataggtgttctgatctcatgtgacgcagttgccaggaactgagattttgcaaca 2184
|||||||| || ||||||||||||||||| | || |||||||||||||| || ||||||
Sbjct: 264 ccattcattggagttctgatctcatgtgaaactgtagccaggaactgagacttggcaaca 205
Query: 2185 tcagcagcttc 2195
|| ||||||||
Sbjct: 204 tctgcagcttc 194
>gb|CV763955.1|CV763955 FGAS058338 Triticum aestivum FGAS: Library 2 Gate 3 Triticum
aestivum cDNA, mRNA sequence
Length = 827
Score = 69.9 bits (35), Expect = 1e-009
Identities = 47/51 (92%)
Strand = Plus / Minus
Query: 570 tatttgtccggttgcctcaaacccgtccatctctggcatctgaacatccat 620
|||||| | ||||||||||||||| ||||||||||||||||||| ||||||
Sbjct: 236 tatttgccgggttgcctcaaacccatccatctctggcatctgaatatccat 186
Score = 67.9 bits (34), Expect = 4e-009
Identities = 82/98 (83%)
Strand = Plus / Minus
Query: 382 agctgctcctcgtcgaagggtttagatacgtatccatccattcccgattttatgcactct 441
||||||| ||| ||||||||||| || ||||| ||||||||||| | ||| |||| ||
Sbjct: 430 agctgcttctcctcgaagggtttcgagacgtagccatccattccatactttgtgcattcc 371
Query: 442 tcgtaagttgcctggataacatcggctgtcattgccag 479
|| | ||| ||||||||||| ||||| |||||||||||
Sbjct: 370 tcatgagtggcctggataacgtcggcagtcattgccag 333
>gb|DR739349.1|DR739349 FGAS084566 Triticum aestivum FGAS: Library 6 CAP GATE 1 Triticum
aestivum cDNA, mRNA sequence
Length = 1147
Score = 69.9 bits (35), Expect = 1e-009
Identities = 47/51 (92%)
Strand = Plus / Minus
Query: 570 tatttgtccggttgcctcaaacccgtccatctctggcatctgaacatccat 620
|||||| | ||||||||||||||| ||||||||||||||||||| ||||||
Sbjct: 504 tatttgccgggttgcctcaaacccatccatctctggcatctgaatatccat 454
Score = 67.9 bits (34), Expect = 4e-009
Identities = 82/98 (83%)
Strand = Plus / Minus
Query: 382 agctgctcctcgtcgaagggtttagatacgtatccatccattcccgattttatgcactct 441
||||||| ||| ||||||||||| || ||||| ||||||||||| | ||| |||| ||
Sbjct: 698 agctgcttctcctcgaagggtttcgagacgtagccatccattccatactttgtgcattcc 639
Query: 442 tcgtaagttgcctggataacatcggctgtcattgccag 479
|| | ||| ||||||||||| ||||| |||||||||||
Sbjct: 638 tcatgagtggcctggataacgtcggcagtcattgccag 601
>gb|CD490605.1|CD490605 WHE2962_F04_L08ZT Brevor wheat dormant embryo cDNA library Triticum
aestivum cDNA clone WHE2962_F04_L08, mRNA sequence
Length = 759
Score = 67.9 bits (34), Expect = 4e-009
Identities = 82/98 (83%)
Strand = Plus / Plus
Query: 382 agctgctcctcgtcgaagggtttagatacgtatccatccattcccgattttatgcactct 441
||||||| ||| ||||||||||| || ||||| ||||||||||| | ||| |||| ||
Sbjct: 611 agctgcttctcctcgaagggtttcgagacgtagccatccattccatactttgtgcattcc 670
Query: 442 tcgtaagttgcctggataacatcggctgtcattgccag 479
|| | ||| ||||||||||| ||||| |||||||||||
Sbjct: 671 tcatgagtggcctggataacgtcggcagtcattgccag 708
>gb|CD874259.1|CD874259 AZO3.101L21F010928 AZO3 Triticum aestivum cDNA clone AZO3101L21,
mRNA sequence
Length = 677
Score = 67.9 bits (34), Expect = 4e-009
Identities = 82/98 (83%)
Strand = Plus / Minus
Query: 382 agctgctcctcgtcgaagggtttagatacgtatccatccattcccgattttatgcactct 441
||||||| ||| ||||||||||| || ||||| ||||||||||| | ||| |||| ||
Sbjct: 422 agctgcttctcctcgaagggtttcgagacgtagccatccattccatactttgtgcattcc 363
Query: 442 tcgtaagttgcctggataacatcggctgtcattgccag 479
|| | ||| |||||||| |||||||| |||||||||||
Sbjct: 362 tcatgagtggcctggatgacatcggcagtcattgccag 325
Score = 61.9 bits (31), Expect = 3e-007
Identities = 46/51 (90%)
Strand = Plus / Minus
Query: 570 tatttgtccggttgcctcaaacccgtccatctctggcatctgaacatccat 620
|||||| | ||| ||||||||||| ||||||||||||||||||| ||||||
Sbjct: 228 tatttgccgggtcgcctcaaacccatccatctctggcatctgaatatccat 178
>gb|CK163854.1|CK163854 FGAS016490 Triticum aestivum FGAS: Library 4 Gate 8 Triticum
aestivum cDNA, mRNA sequence
Length = 1063
Score = 67.9 bits (34), Expect = 4e-009
Identities = 82/98 (83%)
Strand = Plus / Plus
Query: 382 agctgctcctcgtcgaagggtttagatacgtatccatccattcccgattttatgcactct 441
||||||| ||| || |||||||| || ||||| ||||||||||| | ||| |||| ||
Sbjct: 643 agctgcttctcctcaaagggtttcgagacgtagccatccattccatactttgtgcattcc 702
Query: 442 tcgtaagttgcctggataacatcggctgtcattgccag 479
|| | ||| ||||||||||||||||| |||||||||||
Sbjct: 703 tcatgagtggcctggataacatcggcagtcattgccag 740
>gb|BJ248053.1|BJ248053 BJ248053 Y. Ogihara unpublished cDNA library, Wh_f Triticum aestivum
cDNA clone whf4l08 5', mRNA sequence
Length = 459
Score = 63.9 bits (32), Expect = 7e-008
Identities = 65/76 (85%)
Strand = Plus / Minus
Query: 2473 tttgtgacatcatagacatttaccacaatatcctgattgccagcaagtttgctcaacaaa 2532
|||||||||||||| ||||| ||||| | |||||||||||||| || | | |||||||
Sbjct: 290 tttgtgacatcataaacattgaccaccagctcctgattgccagctagctgccgcaacaaa 231
Query: 2533 ttctccacaagtgact 2548
|| |||||||||||||
Sbjct: 230 ttttccacaagtgact 215
>gb|BE517739.1|BE517739 WHE0802_D03_G06ZS Wheat vernalized crown cDNA library Triticum
aestivum cDNA clone WHE0802_D03_G06, mRNA sequence
Length = 562
Score = 61.9 bits (31), Expect = 3e-007
Identities = 61/71 (85%)
Strand = Plus / Minus
Query: 2125 ccattcataggtgttctgatctcatgtgacgcagttgccaggaactgagattttgcaaca 2184
|||||||| || ||||||||||||||||| | || ||||||||||| || || ||||||
Sbjct: 106 ccattcattggagttctgatctcatgtgaaactgtagccaggaactgtgacttggcaaca 47
Query: 2185 tcagcagcttc 2195
|| ||||||||
Sbjct: 46 tctgcagcttc 36
>gb|CD911643.1|CD911643 G550.111L22F010521 G550 Triticum aestivum cDNA clone G550111L22, mRNA
sequence
Length = 582
Score = 61.9 bits (31), Expect = 3e-007
Identities = 61/71 (85%)
Strand = Plus / Minus
Query: 2125 ccattcataggtgttctgatctcatgtgacgcagttgccaggaactgagattttgcaaca 2184
|||||||| || ||||||||||||||||| | || ||||||||||| || || ||||||
Sbjct: 202 ccattcattggagttctgatctcatgtgaaactgtagccaggaactgtgacttggcaaca 143
Query: 2185 tcagcagcttc 2195
|| ||||||||
Sbjct: 142 tctgcagcttc 132
>gb|CK201762.1|CK201762 FGAS010282 Triticum aestivum FGAS: Library 3 Gate 6 Triticum aestivum
cDNA, mRNA sequence
Length = 829
Score = 61.9 bits (31), Expect = 3e-007
Identities = 61/71 (85%)
Strand = Plus / Minus
Query: 2125 ccattcataggtgttctgatctcatgtgacgcagttgccaggaactgagattttgcaaca 2184
|||||||| || ||||||||||||||||| | || ||||||||||| || || ||||||
Sbjct: 539 ccattcattggagttctgatctcatgtgaaactgtagccaggaactgtgacttggcaaca 480
Query: 2185 tcagcagcttc 2195
|| ||||||||
Sbjct: 479 tctgcagcttc 469
>gb|AJ615961.1|AJ615961 AJ615961 Triticum turgidum subsp. durum etiolated seedling 20 day
Triticum turgidum subsp. durum cDNA clone 12422R, mRNA
sequence
Length = 709
Score = 61.9 bits (31), Expect = 3e-007
Identities = 61/71 (85%)
Strand = Plus / Minus
Query: 2125 ccattcataggtgttctgatctcatgtgacgcagttgccaggaactgagattttgcaaca 2184
|||||||| || ||||||||||||||||| | || ||||||||||| || || ||||||
Sbjct: 377 ccattcattggagttctgatctcatgtgaaactgtagccaggaactgtgacttggcaaca 318
Query: 2185 tcagcagcttc 2195
|| ||||||||
Sbjct: 317 tctgcagcttc 307
>gb|BJ303508.1|BJ303508 BJ303508 Y. Ogihara unpublished cDNA library, Wh_yd Triticum
aestivum cDNA clone whyd19o07 5', mRNA sequence
Length = 488
Score = 54.0 bits (27), Expect = 6e-005
Identities = 75/91 (82%)
Strand = Plus / Minus
Query: 382 agctgctcctcgtcgaagggtttagatacgtatccatccattcccgattttatgcactct 441
||||||| ||| ||||||||||| || ||||| ||||||||||| | ||| |||| ||
Sbjct: 92 agctgcttctcctcgaagggtttcgagacgtagccatccattccatactttgtgcattcc 33
Query: 442 tcgtaagttgcctggataacatcggctgtca 472
|| | ||| ||||||||||| ||||| ||||
Sbjct: 32 tcatgagtggcctggataacgtcggcagtca 2
>gb|BJ309155.1|BJ309155 BJ309155 Y. Ogihara unpublished cDNA library, Wh_yd Triticum
aestivum cDNA clone whyd18p19 3', mRNA sequence
Length = 466
Score = 54.0 bits (27), Expect = 6e-005
Identities = 75/91 (82%)
Strand = Plus / Plus
Query: 382 agctgctcctcgtcgaagggtttagatacgtatccatccattcccgattttatgcactct 441
||||||| ||| ||||||||||| || ||||| ||||||||||| | ||| |||| ||
Sbjct: 375 agctgcttctcctcgaagggtttcgagacgtagccatccattccatactttgtgcattcc 434
Query: 442 tcgtaagttgcctggataacatcggctgtca 472
|| | ||| ||||||||||| ||||| ||||
Sbjct: 435 tcatgagtggcctggataacgtcggcagtca 465
>gb|BJ309382.1|BJ309382 BJ309382 Y. Ogihara unpublished cDNA library, Wh_yd Triticum
aestivum cDNA clone whyd19o07 3', mRNA sequence
Length = 433
Score = 54.0 bits (27), Expect = 6e-005
Identities = 75/91 (82%)
Strand = Plus / Plus
Query: 382 agctgctcctcgtcgaagggtttagatacgtatccatccattcccgattttatgcactct 441
||||||| ||| ||||||||||| || ||||| ||||||||||| | ||| |||| ||
Sbjct: 342 agctgcttctcctcgaagggtttcgagacgtagccatccattccatactttgtgcattcc 401
Query: 442 tcgtaagttgcctggataacatcggctgtca 472
|| | ||| ||||||||||| ||||| ||||
Sbjct: 402 tcatgagtggcctggataacgtcggcagtca 432
>gb|CV771120.1|CV771120 FGAS065513 Triticum aestivum FGAS: Library 2 Gate 3 Triticum aestivum
cDNA, mRNA sequence
Length = 884
Score = 54.0 bits (27), Expect = 6e-005
Identities = 51/59 (86%)
Strand = Plus / Minus
Query: 2137 gttctgatctcatgtgacgcagttgccaggaactgagattttgcaacatcagcagcttc 2195
||||||||||||||||| | || ||||||||||| || || |||||||| ||||||||
Sbjct: 615 gttctgatctcatgtgaaactgtagccaggaactgtgacttggcaacatctgcagcttc 557
>gb|BJ303289.1|BJ303289 BJ303289 Y. Ogihara unpublished cDNA library, Wh_yd Triticum
aestivum cDNA clone whyd18p19 5', mRNA sequence
Length = 498
Score = 48.1 bits (24), Expect = 0.004
Identities = 39/44 (88%)
Strand = Plus / Minus
Query: 382 agctgctcctcgtcgaagggtttagatacgtatccatccattcc 425
||||||| ||| ||||||||||| || ||||| |||||||||||
Sbjct: 102 agctgcttctcctcgaagggtttcgagacgtagccatccattcc 59
>gb|CK211085.1|CK211085 FGAS022913 Triticum aestivum FGAS: Library 5 GATE 7 Triticum aestivum
cDNA, mRNA sequence
Length = 1144
Score = 48.1 bits (24), Expect = 0.004
Identities = 69/84 (82%)
Strand = Plus / Minus
Query: 1349 ttatctgcccacccataagttcagctagacacttgctgatgcttaaaccgatgccagtac 1408
||||||| |||| ||| |||||| | ||||| |||||||| || || || || ||||| |
Sbjct: 619 ttatctgaccactcattagttcaacaagacatttgctgatactcaacccaattccagtcc 560
Query: 1409 caccataattccttgaagttgaac 1432
|||||||||| || || |||||||
Sbjct: 559 caccataatttctagatgttgaac 536
>gb|CA608721.1|CA608721 wr1.pk0093.h2 wr1 Triticum aestivum cDNA clone wr1.pk0093.h2 5'
end, mRNA sequence
Length = 591
Score = 46.1 bits (23), Expect = 0.016
Identities = 59/71 (83%)
Strand = Plus / Minus
Query: 409 acgtatccatccattcccgattttatgcactcttcgtaagttgcctggataacatcggct 468
||||| ||||||||||| | ||| |||| || || | ||| ||||||||||| |||||
Sbjct: 165 acgtagccatccattccatactttgtgcattcctcatgagtggcctggataacgtcggca 106
Query: 469 gtcattgccag 479
|||||||||||
Sbjct: 105 gtcattgccag 95
>gb|BE404374.1|BE404374 WHE0441_D11_G21ZS Wheat etiolated seedling root cDNA library Triticum
aestivum cDNA clone WHE0441_D11_G21, mRNA sequence
Length = 589
Score = 44.1 bits (22), Expect = 0.062
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 1378 cacttgctgatgcttaaaccgatgcc 1403
||||||||||||||||| ||||||||
Sbjct: 315 cacttgctgatgcttaatccgatgcc 290
>gb|BJ269645.1|BJ269645 BJ269645 Y. Ogihara unpublished cDNA library, Wh_oh Triticum aestivum
cDNA clone whoh22o12 5', mRNA sequence
Length = 664
Score = 44.1 bits (22), Expect = 0.062
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 1378 cacttgctgatgcttaaaccgatgcc 1403
||||||||||||||||| ||||||||
Sbjct: 636 cacttgctgatgcttaatccgatgcc 611
>gb|BJ211119.1|BJ211119 BJ211119 Y. Ogihara unpublished cDNA library, Wh Triticum aestivum
cDNA clone wh37o17 5', mRNA sequence
Length = 630
Score = 42.1 bits (21), Expect = 0.25
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 3282 ccgctcctcctcctctttctcttcctcct 3310
||||||||||||||| | |||||||||||
Sbjct: 67 ccgctcctcctcctcgtcctcttcctcct 95
>gb|BJ232561.1|BJ232561 BJ232561 Y. Ogihara unpublished cDNA library, Wh_e Triticum aestivum
cDNA clone whe1a02 5', mRNA sequence
Length = 547
Score = 42.1 bits (21), Expect = 0.25
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 3282 ccgctcctcctcctctttctcttcctcct 3310
||||||||||||||| | |||||||||||
Sbjct: 65 ccgctcctcctcctcgtcctcttcctcct 93
>gb|AL817387.1|AL817387 AL817387 j:324 Triticum aestivum cDNA clone B01_j324_plate_10, mRNA
sequence
Length = 115
Score = 42.1 bits (21), Expect = 0.25
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 3286 tcctcctcctctttctcttcctcct 3310
||||||||||||| |||||||||||
Sbjct: 111 tcctcctcctcttcctcttcctcct 87
>gb|CK194769.1|CK194769 FGAS003201 Triticum aestivum FGAS: Library 3 Gate 6 Triticum aestivum
cDNA, mRNA sequence
Length = 806
Score = 42.1 bits (21), Expect = 0.25
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 3286 tcctcctcctctttctcttcctcct 3310
||||||||||||| |||||||||||
Sbjct: 145 tcctcctcctcttcctcttcctcct 121
Database: Triticum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 3:01 PM
Number of letters in database: 367,240,239
Number of sequences in database: 636,343
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 650,125
Number of Sequences: 636343
Number of extensions: 650125
Number of successful extensions: 182499
Number of sequences better than 0.5: 35
Number of HSP's better than 0.5 without gapping: 34
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 182423
Number of HSP's gapped (non-prelim): 62
length of query: 3330
length of database: 367,240,239
effective HSP length: 20
effective length of query: 3310
effective length of database: 354,513,379
effective search space: 1173439284490
effective search space used: 1173439284490
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)