BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2762998.2.1
(1036 letters)
Database: Triticum_nucl_with_EST.fasta
636,343 sequences; 367,240,239 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BQ803541.1|BQ803541 WHE2838_G11_M22ZS Triticum monococcu... 385 e-105
gb|CA644217.1|CA644217 wre1n.pk0078.f1 wre1n Triticum aesti... 147 2e-033
gb|CA661392.1|CA661392 wlmk1.pk0005.h11 wlmk1 Triticum aest... 133 3e-029
gb|CA601686.1|CA601686 wr1.pk0003.e7 wr1 Triticum aestivum ... 109 4e-022
gb|CV776019.1|CV776019 FGAS070423 Triticum aestivum FGAS: L... 92 9e-017
gb|BG275007.1|BG275007 WHE2120_F02_L04ZS Wheat salt-stresse... 54 2e-005
gb|CK163292.1|CK163292 FGAS015914 Triticum aestivum FGAS: L... 54 2e-005
emb|AX756336.1| Sequence 1075 from Patent WO03000905 54 2e-005
gb|BJ221488.1|BJ221488 BJ221488 Y. Ogihara unpublished cDNA... 48 0.001
gb|CD452767.1|CD452767 WHE1124_E06_J12ZT CS wheat etiolated... 48 0.001
gb|CK151503.1|CK151503 FGAS034070 Triticum aestivum FGAS: T... 46 0.005
gb|BQ905128.1|BQ905128 Ta04_13n24_R Ta04_AAFC_ECORC_Fusariu... 42 0.075
gb|CA600059.1|CA600059 waw1c.pk004.c8 waw1c Triticum aestiv... 42 0.075
gb|CA626563.1|CA626563 wl1n.pk0148.f1 wl1n Triticum aestivu... 42 0.075
>gb|BQ803541.1|BQ803541 WHE2838_G11_M22ZS Triticum monococcum vernalized apex cDNA library
Triticum monococcum cDNA clone WHE2838_G11_M22, mRNA
sequence
Length = 638
Score = 385 bits (194), Expect = e-105
Identities = 452/538 (84%)
Strand = Plus / Minus
Query: 263 acaaagcttatccctgcaattaaccaaaagaaccggtcgagatggccttcattcagattg 322
|||||||| ||||||||||| ||||| ||||||||||| ||||||||||||||||| ||
Sbjct: 545 acaaagctgatccctgcaatcaaccagaagaaccggtcaagatggccttcattcaggtta 486
Query: 323 tcagggatccatccaggatctcctccctgagttgtaatgtacgacaccaatgtcagtatg 382
|| |||||||||||||||||||| || ||||||||| |||||||||| |||||||||
Sbjct: 485 tccgggatccatccaggatctccacctcgagttgtaacatacgacaccatggtcagtatg 426
Query: 383 atggagcttatatagtttcccagtgagactgtaataagtgcaagtgcactacataaactc 442
| ||||||| |||| | ||| |||||| || | || |||| |||| ||||||||||
Sbjct: 425 aacgagcttaaatagctccccgctgagaccgtgacgagcgcaaatgcagcacataaactc 366
Query: 443 ctcatggcatctggggcctgatcgtaaaagaactcaacttgaccaatacaagtaaacacc 502
||||||||||||||||||||||| || |||||| ||| |||||| ||| ||| || |||
Sbjct: 365 ctcatggcatctggggcctgatcatagaagaacacaagttgacctatattagtgaaaacc 306
Query: 503 tcagcagcgcccaccaagaaatattgtggtatttgccaaagaatgctcattggaacagca 562
|| |||||||| || |||||||| || ||||||||||||||||||||||| ||||| ||
Sbjct: 305 tcggcagcgccaacaaagaaatactgcggtatttgccaaagaatgctcatcggaaccaca 246
Query: 563 gccttctcatgaatgagaccttcagacctggcaatctctaaacgcttcaactcaactaga 622
||||||||||| || |||||||||||| ||||||||| || |||||||||||||| | |
Sbjct: 245 gccttctcatggataagaccttcagacgcggcaatctccaagcgcttcaactcaacaaaa 186
Query: 623 gctgcagataccatcgcgagaatggacaggactaatccaattcccatccgctgtagctca 682
|||||||| ||||| || | ||||||||| || |||||||| || ||||||||||||||
Sbjct: 185 gctgcagacaccattgcaataatggacagcaccaatccaatgccaatccgctgtagctcc 126
Query: 683 gaaaaacccttctcccttccagtgaattttctagctagtggcaccaggatgcggtcatag 742
|| |||||||| |||||||||||||| ||||| |||| || | || | ||||||||
Sbjct: 125 gagaaacccttttcccttccagtgaactttctggctataggtatgagaacacggtcataa 66
Query: 743 agtgggacccacatgatgacgctgattacatcaaaagtggagagagatgcaggaggaa 800
||||| ||||| || ||||| |||||||| || ||| | ||||| || ||||||||||
Sbjct: 65 agtggaacccagatcatgacactgattacgtcgaaactcgagagggacgcaggaggaa 8
>gb|CA644217.1|CA644217 wre1n.pk0078.f1 wre1n Triticum aestivum cDNA clone wre1n.pk0078.f1
5' end, mRNA sequence
Length = 601
Score = 147 bits (74), Expect = 2e-033
Identities = 164/194 (84%)
Strand = Plus / Minus
Query: 263 acaaagcttatccctgcaattaaccaaaagaaccggtcgagatggccttcattcagattg 322
|||||||| ||||||||||| ||||||||||||||||| |||||||||||||||| ||
Sbjct: 195 acaaagctgatccctgcaatcaaccaaaagaaccggtcaagatggccttcattcatgtta 136
Query: 323 tcagggatccatccaggatctcctccctgagttgtaatgtacgacaccaatgtcagtatg 382
|| |||||||||||||||||||| || ||||||||| |||||||||| |||| ||||
Sbjct: 135 tccgggatccatccaggatctccacctcgagttgtaacatacgacaccagggtcaatatg 76
Query: 383 atggagcttatatagtttcccagtgagactgtaataagtgcaagtgcactacataaactc 442
| ||||||| |||| | ||| |||||| | | || |||| |||| |||||||||||
Sbjct: 75 aatgagcttaaatagctccccgctgagaccatgacgagcgcaaatgcagtacataaactc 16
Query: 443 ctcatggcatctgg 456
||||||||||||||
Sbjct: 15 ctcatggcatctgg 2
>gb|CA661392.1|CA661392 wlmk1.pk0005.h11 wlmk1 Triticum aestivum cDNA clone
wlmk1.pk0005.h11 5' end, mRNA sequence
Length = 514
Score = 133 bits (67), Expect = 3e-029
Identities = 118/135 (87%)
Strand = Plus / Minus
Query: 263 acaaagcttatccctgcaattaaccaaaagaaccggtcgagatggccttcattcagattg 322
|||||||| ||||||||||| ||||| ||||||||||| ||||||||||||||||| ||
Sbjct: 138 acaaagctgatccctgcaatcaaccagaagaaccggtcaagatggccttcattcaggtta 79
Query: 323 tcagggatccatccaggatctcctccctgagttgtaatgtacgacaccaatgtcagtatg 382
|| |||||||||||||||||||| || ||||||||| |||||||||| |||||||||
Sbjct: 78 tccgggatccatccaggatctccacctcgagttgtaacatacgacaccatggtcagtatg 19
Query: 383 atggagcttatatag 397
| ||||||| ||||
Sbjct: 18 aacgagcttaaatag 4
>gb|CA601686.1|CA601686 wr1.pk0003.e7 wr1 Triticum aestivum cDNA clone wr1.pk0003.e7 5'
end, mRNA sequence
Length = 576
Score = 109 bits (55), Expect = 4e-022
Identities = 76/83 (91%)
Strand = Plus / Plus
Query: 263 acaaagcttatccctgcaattaaccaaaagaaccggtcgagatggccttcattcagattg 322
|||||||| ||||||||||| ||||||||||||||||| |||||||||||||||| ||
Sbjct: 337 acaaagctgatccctgcaatcaaccaaaagaaccggtcaagatggccttcattcatgtta 396
Query: 323 tcagggatccatccaggatctcc 345
|| ||||||||||||||||||||
Sbjct: 397 tccgggatccatccaggatctcc 419
>gb|CV776019.1|CV776019 FGAS070423 Triticum aestivum FGAS: Library 2 Gate 3 Triticum
aestivum cDNA, mRNA sequence
Length = 817
Score = 91.7 bits (46), Expect = 9e-017
Identities = 206/258 (79%), Gaps = 1/258 (0%)
Strand = Plus / Minus
Query: 643 aatggacaggactaatccaattcccatccgctgtagctcagaaaaacccttctcccttcc 702
||||| ||| || |||||||| || ||||| ||||| || || |||||||| || |||||
Sbjct: 559 aatgggcagcaccaatccaatgccaatccgttgtagttccgagaaacccttttctcttcc 500
Query: 703 agtgaattttctagctagtggcaccaggatgcggtcatagagtgggacccacatgatgac 762
|||||| ||||| |||| || | || | |||||||| |||| ||||| || |||||
Sbjct: 499 agtgaactttctggctataggtatgagaacacggtcataaagtga-acccagatcatgac 441
Query: 763 gctgattacatcaaaagtggagagagatgcaggaggaatgttgaaagacccaatgcgctt 822
||||| || ||||| | ||||| || |||||||||| || |||||||| | |||||
Sbjct: 440 actgatcacgtcaaagctcgagagggacgcaggaggaacattaaaagacccgacccgctt 381
Query: 823 gtcaagaaccatgccctgctctatgaacatggaagagttttgggcataaacagcactgaa 882
||| |||||||| |||||||||| ||||||||| ||||| || || || || ||| ||||
Sbjct: 380 gtcgagaaccattccctgctctaggaacatggaggagttctgagcgtacaccgcattgaa 321
Query: 883 tatgatagcagtagccca 900
|||||||| ||| |||||
Sbjct: 320 tatgatagtagttgccca 303
>gb|BG275007.1|BG275007 WHE2120_F02_L04ZS Wheat salt-stressed crown cDNA library Triticum
aestivum cDNA clone WHE2120_F02_L04, mRNA sequence
Length = 586
Score = 54.0 bits (27), Expect = 2e-005
Identities = 114/143 (79%)
Strand = Plus / Minus
Query: 665 cccatccgctgtagctcagaaaaacccttctcccttccagtgaattttctagctagtggc 724
||||||||||| ||||| ||||| ||| ||||| | || ||||| | || |||| |||
Sbjct: 439 cccatccgctggagctctgaaaagcccctctccttgccggtgaacctcctggctattggg 380
Query: 725 accaggatgcggtcatagagtgggacccacatgatgacgctgattacatcaaaagtggag 784
|||||||||| |||||||| || ||||| || ||||| |||| || || || |||||
Sbjct: 379 accaggatgctgtcatagataggaacccatataatgacactgaccacgtcgaaggtggat 320
Query: 785 agagatgcaggaggaatgttgaa 807
|||||||| ||||| || |||||
Sbjct: 319 agagatgctggagggatcttgaa 297
>gb|CK163292.1|CK163292 FGAS015914 Triticum aestivum FGAS: Library 4 Gate 8 Triticum
aestivum cDNA, mRNA sequence
Length = 1073
Score = 54.0 bits (27), Expect = 2e-005
Identities = 114/143 (79%)
Strand = Plus / Minus
Query: 665 cccatccgctgtagctcagaaaaacccttctcccttccagtgaattttctagctagtggc 724
||||||||||| ||||| ||||| ||| ||||| | || ||||| | || |||| |||
Sbjct: 171 cccatccgctggagctctgaaaagcccctctccttgccggtgaacctcctggctattggg 112
Query: 725 accaggatgcggtcatagagtgggacccacatgatgacgctgattacatcaaaagtggag 784
|||||||||| |||||||| || ||||| || ||||| |||| || || || |||||
Sbjct: 111 accaggatgctgtcatagataggaacccatataatgacactgaccacgtcgaaggtggat 52
Query: 785 agagatgcaggaggaatgttgaa 807
|||||||| ||||| || |||||
Sbjct: 51 agagatgctggagggatcttgaa 29
>emb|AX756336.1| Sequence 1075 from Patent WO03000905
Length = 1081
Score = 54.0 bits (27), Expect = 2e-005
Identities = 114/143 (79%)
Strand = Plus / Minus
Query: 665 cccatccgctgtagctcagaaaaacccttctcccttccagtgaattttctagctagtggc 724
||||||||||| ||||| ||||| ||| ||||| | || ||||| | || |||| |||
Sbjct: 389 cccatccgctggagctctgaaaagcccctctccttgccggtgaacctcctggctattggg 330
Query: 725 accaggatgcggtcatagagtgggacccacatgatgacgctgattacatcaaaagtggag 784
|||||||||| |||||||| || ||||| || ||||| |||| || || || |||||
Sbjct: 329 accaggatgctgtcatagataggaacccatataatgacactgaccacgtcgaaggtggat 270
Query: 785 agagatgcaggaggaatgttgaa 807
|||||||| ||||| || |||||
Sbjct: 269 agagatgctggagggatcttgaa 247
>gb|BJ221488.1|BJ221488 BJ221488 Y. Ogihara unpublished cDNA library, Wh Triticum aestivum
cDNA clone wh25g16 3', mRNA sequence
Length = 635
Score = 48.1 bits (24), Expect = 0.001
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 308 ccttcattcagattgtcagggatccatccagg 339
|||||||||||||| || ||||||||||||||
Sbjct: 247 ccttcattcagattatccgggatccatccagg 278
>gb|CD452767.1|CD452767 WHE1124_E06_J12ZT CS wheat etiolated seedling root normalized cDNA
library Triticum aestivum cDNA clone WHE1124_E06_J12,
mRNA sequence
Length = 655
Score = 48.1 bits (24), Expect = 0.001
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 308 ccttcattcagattgtcagggatccatccagg 339
|||||||||||||| || ||||||||||||||
Sbjct: 499 ccttcattcagattatccgggatccatccagg 530
>gb|CK151503.1|CK151503 FGAS034070 Triticum aestivum FGAS: TaLt3 Triticum aestivum cDNA,
mRNA sequence
Length = 864
Score = 46.1 bits (23), Expect = 0.005
Identities = 113/143 (79%)
Strand = Plus / Minus
Query: 665 cccatccgctgtagctcagaaaaacccttctcccttccagtgaattttctagctagtggc 724
||||||||||| ||||| ||||| ||| ||||| | || ||||| | || |||| ||
Sbjct: 440 cccatccgctgcagctctgaaaagcccctctccttgccggtgaacctcctggctatcggg 381
Query: 725 accaggatgcggtcatagagtgggacccacatgatgacgctgattacatcaaaagtggag 784
|||||||||| ||| |||| || ||||| |||||||| || | || ||||| |||||
Sbjct: 380 accaggatgctgtcgtagataggaacccatatgatgacactaaccacgtcaaaggtggat 321
Query: 785 agagatgcaggaggaatgttgaa 807
|||||||| ||||| || |||||
Sbjct: 320 agagatgctggagggatcttgaa 298
>gb|BQ905128.1|BQ905128 Ta04_13n24_R
Ta04_AAFC_ECORC_Fusarium_graminearum_inoculated_wheat_he
ads Triticum aestivum cDNA clone Ta04_13n24, mRNA
sequence
Length = 570
Score = 42.1 bits (21), Expect = 0.075
Identities = 112/143 (78%)
Strand = Plus / Minus
Query: 665 cccatccgctgtagctcagaaaaacccttctcccttccagtgaattttctagctagtggc 724
||||||||||| ||||| ||||| ||| ||||| | || ||||| | || |||| ||
Sbjct: 430 cccatccgctgcagctctgaaaagcccctctccttgccggtgaacctcctggctatcggg 371
Query: 725 accaggatgcggtcatagagtgggacccacatgatgacgctgattacatcaaaagtggag 784
|||||||||| ||| |||| | ||||| |||||||| || | || ||||| |||||
Sbjct: 370 accaggatgctgtcgtagatasgaacccatatgatgacactaaccacgtcaaaggtggat 311
Query: 785 agagatgcaggaggaatgttgaa 807
|||||||| ||||| || |||||
Sbjct: 310 agagatgctggagggatcttgaa 288
>gb|CA600059.1|CA600059 waw1c.pk004.c8 waw1c Triticum aestivum cDNA clone waw1c.pk004.c8 5'
end, mRNA sequence
Length = 653
Score = 42.1 bits (21), Expect = 0.075
Identities = 30/33 (90%)
Strand = Plus / Minus
Query: 535 ttgccaaagaatgctcattggaacagcagcctt 567
|||||| || ||||||||||||||||| |||||
Sbjct: 346 ttgccacaggatgctcattggaacagccgcctt 314
>gb|CA626563.1|CA626563 wl1n.pk0148.f1 wl1n Triticum aestivum cDNA clone wl1n.pk0148.f1 5'
end, mRNA sequence
Length = 608
Score = 42.1 bits (21), Expect = 0.075
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 308 ccttcattcagattgtcagggatccatccagg 339
|||||||||||||| || || |||||||||||
Sbjct: 392 ccttcattcagattatccggnatccatccagg 361
Database: Triticum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 3:01 PM
Number of letters in database: 367,240,239
Number of sequences in database: 636,343
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 139,229
Number of Sequences: 636343
Number of extensions: 139229
Number of successful extensions: 31919
Number of sequences better than 0.5: 14
Number of HSP's better than 0.5 without gapping: 12
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 31899
Number of HSP's gapped (non-prelim): 21
length of query: 1036
length of database: 367,240,239
effective HSP length: 20
effective length of query: 1016
effective length of database: 354,513,379
effective search space: 360185593064
effective search space used: 360185593064
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)